Query 031755
Match_columns 153
No_of_seqs 108 out of 1420
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.4E-22 8.3E-27 130.2 11.2 81 42-122 18-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 3.2E-20 1.1E-24 122.7 15.5 90 39-128 11-100 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 6.8E-21 2.3E-25 125.6 12.0 86 40-125 3-88 (110)
4 2dnz_A Probable RNA-binding pr 99.9 1.7E-20 5.8E-25 119.9 12.7 87 41-127 3-89 (95)
5 2lxi_A RNA-binding protein 10; 99.9 1E-21 3.6E-26 125.2 6.9 84 43-126 1-86 (91)
6 3md1_A Nuclear and cytoplasmic 99.8 1.9E-20 6.5E-25 116.8 11.9 82 43-124 1-82 (83)
7 2fy1_A RNA-binding motif prote 99.8 2.5E-20 8.5E-25 123.9 13.0 87 40-127 4-90 (116)
8 1whw_A Hypothetical protein ri 99.8 2E-20 6.9E-25 120.5 12.2 87 40-126 5-91 (99)
9 2cpz_A CUG triplet repeat RNA- 99.8 3.5E-20 1.2E-24 122.7 13.6 88 39-126 21-108 (115)
10 2dgs_A DAZ-associated protein 99.8 3.3E-20 1.1E-24 119.6 12.7 88 39-127 6-93 (99)
11 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.1E-20 7.3E-25 117.6 11.4 83 41-123 4-86 (87)
12 2cq0_A Eukaryotic translation 99.8 3.5E-20 1.2E-24 120.3 12.5 88 39-126 11-98 (103)
13 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.4E-24 123.6 16.0 91 38-128 37-127 (139)
14 2lkz_A RNA-binding protein 5; 99.8 4.5E-21 1.5E-25 123.3 7.9 84 39-122 5-94 (95)
15 4f25_A Polyadenylate-binding p 99.8 2.1E-20 7.2E-25 124.0 11.4 84 42-127 4-87 (115)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.7E-20 5.7E-25 121.5 10.5 90 39-128 8-97 (102)
17 1x5t_A Splicing factor 3B subu 99.8 1.9E-20 6.4E-25 120.0 10.5 86 41-126 3-89 (96)
18 2do4_A Squamous cell carcinoma 99.8 6.3E-20 2.2E-24 118.5 13.0 87 39-126 13-99 (100)
19 2d9p_A Polyadenylate-binding p 99.8 6.9E-20 2.4E-24 118.9 13.1 88 39-128 11-98 (103)
20 1x5s_A Cold-inducible RNA-bind 99.8 3.6E-20 1.2E-24 120.0 11.6 88 39-126 8-95 (102)
21 1x5u_A Splicing factor 3B subu 99.8 4.6E-20 1.6E-24 120.0 12.1 89 39-127 11-99 (105)
22 2do0_A HnRNP M, heterogeneous 99.8 1.8E-19 6.3E-24 118.8 15.1 87 39-126 11-97 (114)
23 2cpf_A RNA binding motif prote 99.8 4.3E-20 1.5E-24 118.8 11.5 86 41-126 3-91 (98)
24 2dnm_A SRP46 splicing factor; 99.8 2.4E-20 8.3E-25 121.0 10.3 88 39-126 9-96 (103)
25 1p27_B RNA-binding protein 8A; 99.8 5.5E-20 1.9E-24 119.9 11.9 86 39-124 19-104 (106)
26 1x4h_A RNA-binding protein 28; 99.8 7.2E-20 2.4E-24 120.2 12.2 89 39-127 11-105 (111)
27 2div_A TRNA selenocysteine ass 99.8 4.6E-20 1.6E-24 118.8 11.0 87 39-125 5-96 (99)
28 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.2E-20 1.4E-24 115.7 10.3 82 40-121 4-85 (85)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.5E-24 117.9 13.0 88 39-127 11-101 (105)
30 2cqc_A Arginine/serine-rich sp 99.8 7.2E-20 2.5E-24 116.9 11.5 85 38-122 10-94 (95)
31 2x1f_A MRNA 3'-END-processing 99.8 4.6E-20 1.6E-24 118.3 10.6 83 42-124 1-83 (96)
32 2dgp_A Bruno-like 4, RNA bindi 99.8 6E-20 2.1E-24 119.7 11.3 89 39-127 9-100 (106)
33 3ex7_B RNA-binding protein 8A; 99.8 3.1E-20 1.1E-24 124.7 10.0 89 39-127 18-106 (126)
34 2dng_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 117.7 12.6 87 39-127 11-97 (103)
35 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-20 9E-25 129.5 9.9 88 39-126 66-153 (158)
36 2cph_A RNA binding motif prote 99.8 1.1E-19 3.8E-24 118.5 12.3 89 39-127 11-101 (107)
37 2jrs_A RNA-binding protein 39; 99.8 7.9E-20 2.7E-24 120.0 11.6 86 39-124 22-107 (108)
38 2la6_A RNA-binding protein FUS 99.8 1.1E-19 3.7E-24 117.2 12.0 84 38-121 8-99 (99)
39 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-19 5.4E-24 125.5 13.6 89 39-127 35-123 (156)
40 2dhg_A TRNA selenocysteine ass 99.8 1.2E-19 4.2E-24 117.8 12.1 88 39-127 5-94 (104)
41 2cqd_A RNA-binding region cont 99.8 1.6E-19 5.3E-24 119.6 12.8 87 39-126 13-99 (116)
42 4a8x_A RNA-binding protein wit 99.8 5.2E-20 1.8E-24 115.9 9.8 85 41-125 2-87 (88)
43 1oo0_B CG8781-PA, drosophila Y 99.8 6.6E-20 2.2E-24 120.3 10.5 87 39-125 22-108 (110)
44 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5.1E-25 119.4 6.9 82 44-125 2-85 (90)
45 2cpe_A RNA-binding protein EWS 99.8 9.4E-20 3.2E-24 120.1 11.0 89 39-127 11-107 (113)
46 1wi8_A EIF-4B, eukaryotic tran 99.8 1.4E-19 4.6E-24 117.7 11.3 86 40-127 12-98 (104)
47 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-19 3.7E-24 115.9 10.3 83 39-121 12-94 (94)
48 3ns6_A Eukaryotic translation 99.8 1.8E-20 6.2E-25 121.3 6.2 83 41-123 4-93 (100)
49 2kxn_B Transformer-2 protein h 99.8 8.5E-20 2.9E-24 123.5 9.8 89 37-125 40-128 (129)
50 1p1t_A Cleavage stimulation fa 99.8 1.8E-20 6.2E-25 121.7 6.1 85 42-126 7-91 (104)
51 2dis_A Unnamed protein product 99.8 2.6E-19 9.1E-24 117.2 11.6 89 40-128 5-97 (109)
52 2m2b_A RNA-binding protein 10; 99.8 8.5E-20 2.9E-24 123.6 9.0 88 39-127 19-112 (131)
53 2dh8_A DAZ-associated protein 99.8 1.7E-19 5.7E-24 117.4 10.1 87 39-126 12-98 (105)
54 2dgv_A HnRNP M, heterogeneous 99.8 4.5E-19 1.5E-23 112.6 11.7 85 40-126 5-89 (92)
55 2cqi_A Nucleolysin TIAR; RNA r 99.8 8E-19 2.7E-23 113.8 13.1 86 39-126 11-96 (103)
56 2cq3_A RNA-binding protein 9; 99.8 9.8E-19 3.3E-23 113.4 13.4 88 38-127 10-97 (103)
57 3ulh_A THO complex subunit 4; 99.8 4.5E-19 1.5E-23 115.7 11.8 83 39-122 25-107 (107)
58 2dgx_A KIAA0430 protein; RRM d 99.8 2.8E-19 9.5E-24 114.8 10.6 84 40-126 6-93 (96)
59 3ucg_A Polyadenylate-binding p 99.8 3.7E-19 1.3E-23 112.3 10.6 80 43-123 6-85 (89)
60 2lea_A Serine/arginine-rich sp 99.8 7.5E-20 2.6E-24 124.6 7.9 123 4-126 4-130 (135)
61 2cqg_A TDP-43, TAR DNA-binding 99.8 1.4E-18 4.7E-23 112.7 13.6 86 39-126 11-96 (103)
62 2ywk_A Putative RNA-binding pr 99.8 4.1E-19 1.4E-23 113.5 10.9 83 39-122 12-94 (95)
63 3s7r_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 111.0 11.4 81 39-120 7-87 (87)
64 2khc_A Testis-specific RNP-typ 99.8 2.8E-19 9.4E-24 118.7 10.2 83 39-121 36-118 (118)
65 1x4b_A Heterogeneous nuclear r 99.8 1.9E-19 6.4E-24 119.3 9.3 86 41-127 25-110 (116)
66 2jwn_A Embryonic polyadenylate 99.8 5.4E-19 1.9E-23 118.3 11.3 83 42-125 35-117 (124)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.5E-19 1.5E-23 124.4 11.3 88 39-126 68-155 (165)
68 3n9u_C Cleavage and polyadenyl 99.8 4E-19 1.4E-23 123.9 10.9 82 42-123 54-137 (156)
69 1x4a_A Splicing factor, argini 99.8 1.6E-18 5.5E-23 113.5 13.2 85 39-126 18-102 (109)
70 2ek1_A RNA-binding protein 12; 99.8 1.8E-19 6.2E-24 115.1 7.9 83 40-122 12-94 (95)
71 2rs2_A Musashi-1, RNA-binding 99.8 4.7E-19 1.6E-23 116.4 10.0 87 39-126 21-107 (109)
72 2dgw_A Probable RNA-binding pr 99.8 1.8E-18 6.2E-23 109.7 12.3 84 39-125 6-89 (91)
73 2cqp_A RNA-binding protein 12; 99.8 3E-19 1E-23 114.8 8.7 83 40-122 12-94 (98)
74 2cpx_A Hypothetical protein FL 99.8 3.1E-19 1E-23 117.9 8.9 85 39-127 21-109 (115)
75 1s79_A Lupus LA protein; RRM, 99.8 5.6E-19 1.9E-23 115.0 9.2 82 39-122 7-88 (103)
76 2cpi_A CCR4-NOT transcription 99.8 7.4E-19 2.5E-23 115.7 9.8 87 39-125 11-103 (111)
77 2yh0_A Splicing factor U2AF 65 99.8 6.7E-19 2.3E-23 125.7 10.4 85 41-125 112-196 (198)
78 1x4e_A RNA binding motif, sing 99.8 8.8E-20 3E-24 114.4 5.1 81 41-121 3-83 (85)
79 1sjq_A Polypyrimidine tract-bi 99.8 5.4E-19 1.9E-23 115.3 8.9 83 39-127 12-96 (105)
80 1l3k_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 126.2 9.6 123 6-129 57-189 (196)
81 2fc8_A NCL protein; structure 99.8 2.9E-18 9.9E-23 110.9 12.3 86 39-127 11-96 (102)
82 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.7E-24 116.4 6.6 84 39-124 15-99 (100)
83 2fc9_A NCL protein; structure 99.8 1.9E-18 6.6E-23 111.6 11.3 83 39-125 11-93 (101)
84 3md3_A Nuclear and cytoplasmic 99.8 6.8E-19 2.3E-23 122.1 9.7 117 5-121 42-165 (166)
85 1x4c_A Splicing factor, argini 99.8 3.5E-18 1.2E-22 111.9 12.5 79 41-126 13-96 (108)
86 1why_A Hypothetical protein ri 99.8 1.7E-18 5.8E-23 111.1 10.8 84 37-126 11-96 (97)
87 2err_A Ataxin-2-binding protei 99.8 8E-19 2.7E-23 115.3 9.3 88 34-123 20-107 (109)
88 2kt5_A RNA and export factor-b 99.8 2.6E-18 8.8E-23 115.1 11.9 86 39-125 31-116 (124)
89 3r27_A HnRNP L, heterogeneous 99.8 1.4E-18 4.7E-23 112.4 10.1 82 36-123 14-97 (100)
90 2mss_A Protein (musashi1); RNA 99.8 3.7E-19 1.3E-23 109.0 7.0 75 45-120 1-75 (75)
91 2g4b_A Splicing factor U2AF 65 99.8 8.4E-19 2.9E-23 122.6 9.7 117 5-121 52-172 (172)
92 2ki2_A SS-DNA binding protein 99.8 1.4E-19 4.9E-24 114.6 5.1 81 44-125 2-82 (90)
93 2dgu_A Heterogeneous nuclear r 99.8 5E-18 1.7E-22 110.1 12.5 81 40-128 8-88 (103)
94 2cq4_A RNA binding motif prote 99.8 9.7E-20 3.3E-24 120.3 4.4 84 41-125 23-106 (114)
95 1x5o_A RNA binding motif, sing 99.8 5E-18 1.7E-22 112.0 12.6 84 39-123 21-112 (114)
96 2dnq_A RNA-binding protein 4B; 99.8 3.7E-18 1.3E-22 108.1 11.3 80 40-127 5-84 (90)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.7E-18 9.4E-23 116.8 11.3 83 38-120 58-140 (140)
98 2hvz_A Splicing factor, argini 99.8 1.7E-18 5.8E-23 111.9 9.8 78 44-126 1-78 (101)
99 2jvo_A Nucleolar protein 3; nu 99.8 1.6E-18 5.4E-23 113.7 9.5 85 34-126 22-106 (108)
100 1wez_A HnRNP H', FTP-3, hetero 99.8 3.1E-18 1E-22 111.3 10.6 84 39-125 11-94 (102)
101 1fj7_A Nucleolin RBD1, protein 99.8 1.6E-19 5.3E-24 116.8 4.4 87 39-127 13-99 (101)
102 2qfj_A FBP-interacting repress 99.8 2.4E-18 8.1E-23 124.4 11.1 121 5-125 71-207 (216)
103 2a3j_A U1 small nuclear ribonu 99.8 2.5E-18 8.5E-23 116.0 10.4 84 39-125 25-112 (127)
104 2nlw_A Eukaryotic translation 99.8 1.8E-18 6E-23 112.8 9.2 83 39-123 11-100 (105)
105 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.6E-19 1.9E-23 108.5 6.2 76 44-120 1-76 (77)
106 2cq1_A PTB-like protein L; RRM 99.8 8E-18 2.7E-22 109.2 11.9 82 39-126 11-94 (101)
107 1wex_A Hypothetical protein (r 99.8 5.8E-18 2E-22 110.4 11.1 83 38-126 10-94 (104)
108 2ad9_A Polypyrimidine tract-bi 99.8 4.2E-18 1.4E-22 113.5 10.6 82 39-126 27-110 (119)
109 2e5j_A Methenyltetrahydrofolat 99.8 4.8E-18 1.7E-22 109.1 10.6 82 39-125 15-96 (97)
110 2dgt_A RNA-binding protein 30; 99.8 9.1E-18 3.1E-22 106.7 11.8 81 39-127 6-86 (92)
111 1x4g_A Nucleolysin TIAR; struc 99.8 5.7E-18 1.9E-22 110.9 11.0 82 39-126 21-102 (109)
112 1x4d_A Matrin 3; structural ge 99.8 2E-18 7E-23 112.2 8.5 80 39-124 11-93 (102)
113 2lcw_A RNA-binding protein FUS 99.6 4.2E-20 1.4E-24 122.5 0.0 88 40-127 4-99 (116)
114 4f02_A Polyadenylate-binding p 99.8 1.6E-19 5.4E-24 131.4 2.8 119 5-125 58-183 (213)
115 1fjc_A Nucleolin RBD2, protein 99.8 3.2E-18 1.1E-22 109.6 8.5 83 39-126 12-94 (96)
116 2cjk_A Nuclear polyadenylated 99.8 4.7E-19 1.6E-23 123.4 5.0 118 5-123 46-166 (167)
117 1wg5_A Heterogeneous nuclear r 99.8 1E-17 3.5E-22 109.0 10.8 83 40-124 12-95 (104)
118 2cpy_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 117.2 4.4 84 39-124 11-95 (114)
119 2dnp_A RNA-binding protein 14; 99.8 1.3E-17 4.5E-22 105.6 10.9 80 39-126 5-84 (90)
120 3q2s_C Cleavage and polyadenyl 99.8 4E-18 1.4E-22 125.6 9.6 81 42-122 67-149 (229)
121 2krb_A Eukaryotic translation 99.8 1.5E-18 5.3E-23 107.9 6.3 73 43-117 1-80 (81)
122 1wf1_A RNA-binding protein RAL 99.8 1.1E-17 3.7E-22 109.8 10.6 79 39-125 23-102 (110)
123 2xnq_A Nuclear polyadenylated 99.8 1.4E-17 5E-22 107.0 10.9 79 38-124 17-96 (97)
124 1b7f_A Protein (SXL-lethal pro 99.7 5.1E-18 1.7E-22 118.1 9.4 116 5-120 46-168 (168)
125 2kvi_A Nuclear polyadenylated 99.7 5.3E-18 1.8E-22 108.7 8.8 80 39-126 6-86 (96)
126 1nu4_A U1A RNA binding domain; 99.7 2.8E-18 9.7E-23 109.9 7.4 83 40-125 5-91 (97)
127 2cqh_A IGF-II mRNA-binding pro 99.7 6E-18 2E-22 107.7 8.9 81 40-127 5-87 (93)
128 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.7E-22 107.3 10.6 82 39-126 11-92 (99)
129 2cpd_A Apobec-1 stimulating pr 99.7 3.3E-17 1.1E-21 105.4 12.3 79 39-125 11-91 (99)
130 2wbr_A GW182, gawky, LD47780P; 99.7 5.5E-18 1.9E-22 106.6 8.2 74 42-121 6-79 (89)
131 2e5g_A U6 snRNA-specific termi 99.7 2.1E-17 7E-22 105.5 11.1 79 41-125 6-84 (94)
132 1wel_A RNA-binding protein 12; 99.7 4.9E-18 1.7E-22 113.8 8.5 84 39-123 21-104 (124)
133 3lqv_A PRE-mRNA branch site pr 99.7 8.5E-18 2.9E-22 111.0 9.4 83 40-125 5-87 (115)
134 2jvr_A Nucleolar protein 3; RN 99.7 7.2E-18 2.4E-22 111.2 9.0 81 39-123 24-105 (111)
135 2db1_A Heterogeneous nuclear r 99.7 9.8E-18 3.4E-22 111.6 9.3 83 40-124 14-99 (118)
136 4f02_A Polyadenylate-binding p 99.7 2.2E-17 7.6E-22 120.0 12.0 84 41-124 13-96 (213)
137 2j8a_A Histone-lysine N-methyl 99.7 8.5E-18 2.9E-22 112.6 8.6 80 43-122 2-95 (136)
138 1fxl_A Paraneoplastic encephal 99.7 8E-18 2.7E-22 116.7 8.8 116 5-120 45-167 (167)
139 1iqt_A AUF1, heterogeneous nuc 99.7 2E-18 6.9E-23 105.6 5.1 75 45-120 1-75 (75)
140 2hgl_A HNRPF protein, heteroge 99.7 9.8E-18 3.4E-22 114.3 8.9 82 39-122 40-124 (136)
141 2la4_A Nuclear and cytoplasmic 99.7 8E-18 2.7E-22 108.7 8.0 79 39-123 23-101 (101)
142 1fxl_A Paraneoplastic encephal 99.7 4.1E-17 1.4E-21 113.1 12.0 83 43-125 2-84 (167)
143 2ytc_A PRE-mRNA-splicing facto 99.7 2.7E-17 9.4E-22 102.8 9.7 77 39-121 8-85 (85)
144 3pgw_S U1-70K; protein-RNA com 99.7 3.9E-17 1.3E-21 130.5 13.0 85 41-125 100-184 (437)
145 2i2y_A Fusion protein consists 99.7 2.6E-17 9E-22 113.5 10.3 81 39-124 69-149 (150)
146 1x4f_A Matrin 3; structural ge 99.7 1.6E-17 5.4E-22 109.6 8.5 81 40-126 22-105 (112)
147 2xs2_A Deleted in azoospermia- 99.7 7.6E-18 2.6E-22 109.0 6.8 81 42-125 8-88 (102)
148 1b7f_A Protein (SXL-lethal pro 99.7 3.2E-17 1.1E-21 114.0 10.2 84 42-125 2-85 (168)
149 3egn_A RNA-binding protein 40; 99.7 3.5E-17 1.2E-21 112.1 10.1 85 39-126 41-133 (143)
150 2f3j_A RNA and export factor b 99.7 2.8E-17 9.5E-22 116.7 9.9 84 39-123 84-167 (177)
151 3beg_B Splicing factor, argini 99.7 2.3E-17 7.7E-22 109.3 8.7 77 42-125 15-96 (115)
152 1fje_B Nucleolin RBD12, protei 99.7 1.1E-17 3.9E-22 117.3 7.1 115 5-124 55-175 (175)
153 2e44_A Insulin-like growth fac 99.7 5E-17 1.7E-21 103.9 9.4 80 41-124 13-93 (96)
154 1l3k_A Heterogeneous nuclear r 99.7 7.7E-17 2.6E-21 114.8 11.3 86 39-125 9-94 (196)
155 2lmi_A GRSF-1, G-rich sequence 99.7 9.8E-18 3.4E-22 109.6 6.0 83 39-123 7-92 (107)
156 1x5p_A Negative elongation fac 99.7 1.8E-16 6.1E-21 101.7 11.7 81 39-127 11-91 (97)
157 3nmr_A Cugbp ELAV-like family 99.7 4.7E-17 1.6E-21 113.7 9.6 116 5-121 48-175 (175)
158 2dnn_A RNA-binding protein 12; 99.7 6E-17 2.1E-21 106.4 9.1 77 43-122 16-92 (109)
159 1whx_A Hypothetical protein ri 99.7 6.8E-17 2.3E-21 106.3 9.1 76 43-124 10-85 (111)
160 3smz_A Protein raver-1, ribonu 99.7 7.3E-17 2.5E-21 121.5 10.4 119 5-125 58-177 (284)
161 2hgn_A Heterogeneous nuclear r 99.7 9.4E-18 3.2E-22 114.8 4.8 85 39-126 42-126 (139)
162 2diu_A KIAA0430 protein; struc 99.7 2.6E-16 8.9E-21 99.9 10.4 76 41-126 6-87 (96)
163 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.4E-21 100.6 8.4 75 42-123 4-78 (88)
164 1sjr_A Polypyrimidine tract-bi 99.7 5E-16 1.7E-20 108.5 12.1 78 43-124 46-125 (164)
165 2ghp_A U4/U6 snRNA-associated 99.7 6E-17 2.1E-21 122.4 7.6 119 5-124 160-292 (292)
166 3smz_A Protein raver-1, ribonu 99.7 1E-16 3.5E-21 120.7 8.5 119 6-125 139-266 (284)
167 3zzy_A Polypyrimidine tract-bi 99.7 4.5E-16 1.5E-20 105.0 10.7 77 43-124 28-107 (130)
168 2cq2_A Hypothetical protein LO 99.7 1.8E-16 6.3E-21 104.7 8.6 80 39-124 21-107 (114)
169 2dha_A FLJ20171 protein; RRM d 99.7 1.1E-16 3.9E-21 107.2 7.7 81 41-123 21-105 (123)
170 3md3_A Nuclear and cytoplasmic 99.7 4.6E-16 1.6E-20 107.7 11.0 81 44-125 1-81 (166)
171 3d2w_A TAR DNA-binding protein 99.7 2.4E-16 8.3E-21 99.8 8.6 78 39-125 7-86 (89)
172 2hgm_A HNRPF protein, heteroge 99.7 1.4E-16 4.7E-21 107.2 7.4 81 39-122 38-120 (126)
173 2qfj_A FBP-interacting repress 99.7 3.7E-16 1.3E-20 112.8 9.9 83 41-123 26-108 (216)
174 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.6E-21 100.4 6.3 80 41-127 3-82 (88)
175 2dnl_A Cytoplasmic polyadenyla 99.7 6.8E-16 2.3E-20 101.9 9.9 78 41-121 6-86 (114)
176 3sde_A Paraspeckle component 1 99.6 1.9E-16 6.6E-21 118.4 7.1 118 5-125 59-181 (261)
177 2ghp_A U4/U6 snRNA-associated 99.6 2.5E-16 8.6E-21 119.0 7.8 118 5-126 82-200 (292)
178 3tyt_A Heterogeneous nuclear r 99.6 6.8E-16 2.3E-20 111.9 9.5 78 42-124 3-81 (205)
179 3nmr_A Cugbp ELAV-like family 99.6 1.3E-15 4.6E-20 106.3 10.6 83 42-124 2-89 (175)
180 2e5i_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 101.4 10.8 74 45-124 27-103 (124)
181 2pe8_A Splicing factor 45; RRM 99.6 3.2E-15 1.1E-19 97.5 11.2 82 41-122 6-93 (105)
182 2bz2_A Negative elongation fac 99.6 1.2E-15 4E-20 102.0 9.3 79 39-125 35-113 (121)
183 2hzc_A Splicing factor U2AF 65 99.6 9.7E-16 3.3E-20 96.0 8.1 71 42-119 5-86 (87)
184 3pgw_A U1-A; protein-RNA compl 99.6 3E-15 1E-19 112.5 11.6 83 39-124 5-91 (282)
185 2cjk_A Nuclear polyadenylated 99.6 9.6E-16 3.3E-20 106.5 7.4 79 42-122 2-80 (167)
186 2voo_A Lupus LA protein; RNA-b 99.6 4.3E-15 1.5E-19 106.7 10.8 78 43-122 109-186 (193)
187 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 109.1 7.6 78 41-123 118-197 (198)
188 2adc_A Polypyrimidine tract-bi 99.6 2E-15 6.7E-20 110.8 8.4 78 41-123 149-228 (229)
189 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.6E-19 106.9 11.2 81 39-124 30-111 (229)
190 3u1l_A PRE-mRNA-splicing facto 99.6 3.6E-15 1.2E-19 110.3 8.0 81 40-126 131-232 (240)
191 3pgw_A U1-A; protein-RNA compl 99.6 2.3E-14 7.8E-19 107.7 11.4 78 39-121 203-281 (282)
192 1qm9_A Polypyrimidine tract-bi 99.6 1E-14 3.6E-19 104.2 8.3 77 43-124 3-80 (198)
193 2dit_A HIV TAT specific factor 99.6 7E-14 2.4E-18 91.9 11.4 83 39-125 11-104 (112)
194 1fje_B Nucleolin RBD12, protei 99.5 1.9E-15 6.5E-20 105.9 3.6 85 39-125 9-93 (175)
195 3tyt_A Heterogeneous nuclear r 99.5 2.7E-14 9.3E-19 103.4 8.2 78 41-120 121-204 (205)
196 2yh0_A Splicing factor U2AF 65 99.5 1.1E-13 3.6E-18 98.5 10.4 77 42-125 3-90 (198)
197 3sde_A Paraspeckle component 1 99.5 8.1E-14 2.8E-18 104.1 10.0 78 39-122 18-95 (261)
198 3v4m_A Splicing factor U2AF 65 99.5 5.6E-14 1.9E-18 91.5 7.9 81 42-122 4-96 (105)
199 2g4b_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 96.5 8.8 75 42-123 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.5 2.3E-13 7.7E-18 90.5 9.3 81 42-122 19-108 (118)
201 1jmt_A Splicing factor U2AF 35 99.5 3.1E-14 1.1E-18 92.6 4.0 72 48-120 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.9E-12 1.7E-16 81.6 12.0 66 53-125 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 9.6E-13 3.3E-17 102.0 8.5 77 39-121 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5.3E-16 81.1 8.9 78 41-122 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 3.3E-11 1.1E-15 75.7 7.7 74 41-123 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.1E-15 77.4 9.3 77 39-121 14-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 3.9E-10 1.3E-14 71.2 6.4 75 39-122 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.9E-09 6.6E-14 78.3 9.0 66 56-121 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 4.4E-07 1.5E-11 58.6 8.5 72 42-119 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.0 3.5E-05 1.2E-09 49.3 7.7 76 41-122 3-83 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.9 0.00051 1.7E-08 43.8 12.3 76 41-125 6-86 (104)
212 1whv_A Poly(A)-specific ribonu 97.9 4.4E-05 1.5E-09 48.2 7.0 59 39-106 12-70 (100)
213 1uw4_A UPF3X; nonsense mediate 97.7 0.00024 8.1E-09 44.5 8.1 68 44-111 2-71 (91)
214 3ctr_A Poly(A)-specific ribonu 97.6 8.9E-05 3E-09 46.9 5.1 55 43-106 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0029 9.8E-08 41.4 7.4 74 40-121 21-95 (119)
216 2l08_A Regulator of nonsense t 96.4 0.0029 9.8E-08 39.9 3.6 69 43-111 9-79 (97)
217 3p3d_A Nucleoporin 53; structu 95.6 0.012 4E-07 39.1 3.8 77 43-121 7-97 (132)
218 2kn4_A Immunoglobulin G-bindin 95.6 0.017 5.8E-07 38.9 4.7 35 72-108 2-36 (158)
219 2i2y_A Fusion protein consists 95.6 0.01 3.6E-07 39.7 3.5 40 82-122 10-50 (150)
220 3pq1_A Poly(A) RNA polymerase; 95.4 0.011 3.8E-07 47.4 3.6 59 39-103 49-107 (464)
221 3d45_A Poly(A)-specific ribonu 92.3 0.6 2.1E-05 37.7 8.1 56 43-107 440-495 (507)
222 4f25_A Polyadenylate-binding p 91.8 0.015 5E-07 37.3 -1.6 54 6-59 47-113 (115)
223 2g0c_A ATP-dependent RNA helic 82.1 4 0.00014 23.6 5.3 59 54-121 12-75 (76)
224 4e8u_A Putative uncharacterize 31.6 1.2E+02 0.0042 20.6 6.0 56 45-103 14-81 (172)
225 1xn9_A 30S ribosomal protein S 23.4 1.4E+02 0.0047 18.4 5.7 49 53-102 28-81 (101)
226 2v94_A RPS24, 30S ribosomal pr 21.7 1.5E+02 0.0053 18.4 5.4 47 53-100 37-88 (107)
227 1ywx_A 30S ribosomal protein S 20.4 1.6E+02 0.0056 18.2 5.7 47 53-100 28-79 (102)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=130.15 Aligned_cols=81 Identities=31% Similarity=0.578 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=3.2e-20 Score=122.72 Aligned_cols=90 Identities=27% Similarity=0.390 Sum_probs=83.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 031755 119 IAKPGKDRFG 128 (153)
Q Consensus 119 ~~~~~~~~~~ 128 (153)
++.++..+..
T Consensus 91 ~a~~~~~~~~ 100 (115)
T 2dgo_A 91 WATRKPPAPK 100 (115)
T ss_dssp ESSCCCCCSC
T ss_pred EccCCCCCCc
Confidence 9987765543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=6.8e-21 Score=125.56 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=80.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
.++.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+..|||..++|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 031755 120 AKPGKD 125 (153)
Q Consensus 120 ~~~~~~ 125 (153)
+..+..
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 876543
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=119.95 Aligned_cols=87 Identities=32% Similarity=0.451 Sum_probs=81.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
+.+++|||+|||..+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 031755 121 KPGKDRF 127 (153)
Q Consensus 121 ~~~~~~~ 127 (153)
.++..+.
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8766543
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=125.22 Aligned_cols=84 Identities=23% Similarity=0.476 Sum_probs=77.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC-CCccCCcEEEEEEe
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD-HKNLDGRLIYVDIA 120 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~-~~~i~g~~l~v~~~ 120 (153)
+++|||+|||.++++++|+++|++|| .|..+.+++++.+|.++|||||+|.+.++|++|++.++ +..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999774 55799999999999
Q ss_pred CCCCCC
Q 031755 121 KPGKDR 126 (153)
Q Consensus 121 ~~~~~~ 126 (153)
.++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876554
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.9e-20 Score=116.80 Aligned_cols=82 Identities=30% Similarity=0.481 Sum_probs=78.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
+++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 031755 123 GK 124 (153)
Q Consensus 123 ~~ 124 (153)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=123.87 Aligned_cols=87 Identities=33% Similarity=0.479 Sum_probs=80.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|++|+..|+|..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 031755 120 AKPGKDRF 127 (153)
Q Consensus 120 ~~~~~~~~ 127 (153)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (116)
T 2fy1_A 83 AKKPSFQS 90 (116)
T ss_dssp CCCSSCSS
T ss_pred CCCCCCCC
Confidence 98766543
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=120.54 Aligned_cols=87 Identities=33% Similarity=0.548 Sum_probs=81.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 031755 120 AKPGKDR 126 (153)
Q Consensus 120 ~~~~~~~ 126 (153)
+.++..+
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9886654
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=3.5e-20 Score=122.65 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=82.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
..+..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876554
No 10
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=119.62 Aligned_cols=88 Identities=24% Similarity=0.471 Sum_probs=81.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+. |++..++|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999 99999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998766543
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=117.56 Aligned_cols=83 Identities=29% Similarity=0.435 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCC
Q 031755 121 KPG 123 (153)
Q Consensus 121 ~~~ 123 (153)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=120.31 Aligned_cols=88 Identities=33% Similarity=0.490 Sum_probs=82.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876554
No 13
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-19 Score=123.59 Aligned_cols=91 Identities=29% Similarity=0.501 Sum_probs=84.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
......++|||+|||.++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q 031755 118 DIAKPGKDRFG 128 (153)
Q Consensus 118 ~~~~~~~~~~~ 128 (153)
.++.++..+.+
T Consensus 117 ~~a~~~~~~~~ 127 (139)
T 1u6f_A 117 ALAASGHQRPG 127 (139)
T ss_dssp EESSCCCCCCC
T ss_pred EECCCCCCCCC
Confidence 99998766543
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=123.31 Aligned_cols=84 Identities=30% Similarity=0.491 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCc--eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC----ccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGE--VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK----NLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~--i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~----~i~g 112 (153)
......+|||+|||+++++++|+++|++||. +..|.+++++.+|.++|||||+|.+.++|++|++.|+|. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4455779999999999999999999999995 668999999999999999999999999999999999997 4899
Q ss_pred cEEEEEEeCC
Q 031755 113 RLIYVDIAKP 122 (153)
Q Consensus 113 ~~l~v~~~~~ 122 (153)
++|.|+++++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999875
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=2.1e-20 Score=123.97 Aligned_cols=84 Identities=35% Similarity=0.540 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|.+||.|..+.|+.+. +.++|||||+|.+.++|++|+..|+|..++|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35799999999999999999999999999999999885 5589999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 031755 122 PGKDRF 127 (153)
Q Consensus 122 ~~~~~~ 127 (153)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 765543
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=121.55 Aligned_cols=90 Identities=27% Similarity=0.471 Sum_probs=83.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 031755 119 IAKPGKDRFG 128 (153)
Q Consensus 119 ~~~~~~~~~~ 128 (153)
++.++..+..
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9987665543
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=119.97 Aligned_cols=86 Identities=36% Similarity=0.462 Sum_probs=80.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEE-EEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEV-KLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
..+++|||+|||..+++++|+++|.+||.|..+ .++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988899999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 031755 120 AKPGKDR 126 (153)
Q Consensus 120 ~~~~~~~ 126 (153)
+.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876554
No 18
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.3e-20 Score=118.47 Aligned_cols=87 Identities=25% Similarity=0.478 Sum_probs=81.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+..++ +|.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99876553
No 19
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.9e-20 Score=118.89 Aligned_cols=88 Identities=25% Similarity=0.469 Sum_probs=81.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ ++..+|||||+|.+.++|++|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456789999999999999999999999999999999987 79999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC
Q 031755 119 IAKPGKDRFG 128 (153)
Q Consensus 119 ~~~~~~~~~~ 128 (153)
++.++..+..
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9988665543
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=119.97 Aligned_cols=88 Identities=36% Similarity=0.604 Sum_probs=82.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.6e-20 Score=120.04 Aligned_cols=89 Identities=27% Similarity=0.388 Sum_probs=82.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 998766543
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-19 Score=118.83 Aligned_cols=87 Identities=22% Similarity=0.320 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++ ++..+|||||+|.+.++|++|+..|++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 98765444
No 23
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=118.75 Aligned_cols=86 Identities=27% Similarity=0.465 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCC---CCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI---TKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~---~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
...++|||+|||.++++++|+++|.+||.|..+.+..++. ++.++|||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 031755 118 DIAKPGKDR 126 (153)
Q Consensus 118 ~~~~~~~~~ 126 (153)
.++.++..+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999875544
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=121.05 Aligned_cols=88 Identities=30% Similarity=0.525 Sum_probs=81.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..++|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44557899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.+...+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99875544
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=119.90 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=80.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
....+++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..++|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 988654
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=120.20 Aligned_cols=89 Identities=30% Similarity=0.478 Sum_probs=82.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC------CCccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD------HKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~------~~~i~g 112 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|+ +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred cEEEEEEeCCCCCCC
Q 031755 113 RLIYVDIAKPGKDRF 127 (153)
Q Consensus 113 ~~l~v~~~~~~~~~~ 127 (153)
+.|.|.++.++..+.
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998765543
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=118.82 Aligned_cols=87 Identities=21% Similarity=0.392 Sum_probs=80.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCcee-EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE---
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVA-EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL--- 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~--- 114 (153)
....+++|||+|||..+++++|+++|.+||.|. .+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEeCCCCC
Q 031755 115 -IYVDIAKPGKD 125 (153)
Q Consensus 115 -l~v~~~~~~~~ 125 (153)
|+|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999876543
No 28
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=4.2e-20 Score=115.74 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||..+++++|+++|.+||.|..+.++.++.++..+|||||+|.+.++|++|+..|+|..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred eC
Q 031755 120 AK 121 (153)
Q Consensus 120 ~~ 121 (153)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=1.3e-19 Score=117.86 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=81.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC---cEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG---RLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g---~~l 115 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++ +|.++|||||+|.+.++|++|+..|++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44567899999999999999999999999999999999987 79999999999999999999999999999988 999
Q ss_pred EEEEeCCCCCCC
Q 031755 116 YVDIAKPGKDRF 127 (153)
Q Consensus 116 ~v~~~~~~~~~~ 127 (153)
+|.++.++..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998766553
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=116.93 Aligned_cols=85 Identities=33% Similarity=0.477 Sum_probs=80.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
......++|||+|||..+++++|+++|.+||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEeCC
Q 031755 118 DIAKP 122 (153)
Q Consensus 118 ~~~~~ 122 (153)
+++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=4.6e-20 Score=118.33 Aligned_cols=83 Identities=22% Similarity=0.413 Sum_probs=79.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
++++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 031755 122 PGK 124 (153)
Q Consensus 122 ~~~ 124 (153)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=6e-20 Score=119.68 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=82.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc---CCcEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL---DGRLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i---~g~~l 115 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 455678999999999999999999999999999999999988899999999999999999999999999987 89999
Q ss_pred EEEEeCCCCCCC
Q 031755 116 YVDIAKPGKDRF 127 (153)
Q Consensus 116 ~v~~~~~~~~~~ 127 (153)
+|.++.++..+.
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998766543
No 33
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=3.1e-20 Score=124.70 Aligned_cols=89 Identities=22% Similarity=0.335 Sum_probs=82.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.+.|++|+..|++..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998765543
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.3e-19 Score=117.68 Aligned_cols=87 Identities=30% Similarity=0.419 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+|| |..+.++.++.++.++|||||+|.+.+.|++|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344568999999999999999999999997 999999999989999999999999999999999 799999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998765543
No 35
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=2.6e-20 Score=129.53 Aligned_cols=88 Identities=33% Similarity=0.580 Sum_probs=81.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99875443
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=118.51 Aligned_cols=89 Identities=28% Similarity=0.528 Sum_probs=82.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEec-CCCCCceeEEEEEecCHHHHHHHHHHc-CCCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKD-EITKKSKGYAFIQYTSQDDALLALESM-DHKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~g~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~ 116 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ +.++..+|||||+|.+.++|++|+..| ++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556789999999999999999999999999999999998 778999999999999999999999999 99999999999
Q ss_pred EEEeCCCCCCC
Q 031755 117 VDIAKPGKDRF 127 (153)
Q Consensus 117 v~~~~~~~~~~ 127 (153)
|.++.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765543
No 37
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=7.9e-20 Score=119.97 Aligned_cols=86 Identities=30% Similarity=0.463 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
..+..++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.+.|++|+..|+|..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44557899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 38
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=117.22 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE--------VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN 109 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (153)
...+..++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|++|+..|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 35566789999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred cCCcEEEEEEeC
Q 031755 110 LDGRLIYVDIAK 121 (153)
Q Consensus 110 i~g~~l~v~~~~ 121 (153)
+.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 39
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=1.6e-19 Score=125.52 Aligned_cols=89 Identities=27% Similarity=0.393 Sum_probs=82.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|++|+..|++..|+|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.+...+.
T Consensus 115 ~a~~~~~~~ 123 (156)
T 1h2v_Z 115 WDAGFKEGR 123 (156)
T ss_dssp EESCCCTTC
T ss_pred ECCCCCCcC
Confidence 998765543
No 40
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=117.83 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=81.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhc-cCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc-cCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSA-FGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN-LDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g~~l~ 116 (153)
.....++|||+|||.++++++|+++|.+ ||.|..+.++.++ +|.++|||||+|.+.++|++|+..|++.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEEeCCCCCCC
Q 031755 117 VDIAKPGKDRF 127 (153)
Q Consensus 117 v~~~~~~~~~~ 127 (153)
|.++.++..+.
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99998765543
No 41
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=119.65 Aligned_cols=87 Identities=30% Similarity=0.504 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+..+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 455678999999999999999999999999999999999988899999999999999999999999998 8999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++...
T Consensus 92 ~a~~~~~~ 99 (116)
T 2cqd_A 92 LAYLGAKP 99 (116)
T ss_dssp ESTTTCCC
T ss_pred EcccCCCc
Confidence 99765443
No 42
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=115.92 Aligned_cols=85 Identities=21% Similarity=0.403 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCC-ceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKK-SKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~-~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
...++|||+|||.++++++|+++|.+||.|..+.++.+..++. .+|+|||+|.+.++|++|+..|+|..++|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3468999999999999999999999999999999999876665 899999999999999999999999999999999999
Q ss_pred eCCCCC
Q 031755 120 AKPGKD 125 (153)
Q Consensus 120 ~~~~~~ 125 (153)
+.+...
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 976543
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=6.6e-20 Score=120.34 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=81.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.+.|++|+..|+|..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987554
No 44
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.5e-20 Score=119.38 Aligned_cols=82 Identities=18% Similarity=0.355 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFG--EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+|||+|||.++++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999988
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=120.13 Aligned_cols=89 Identities=26% Similarity=0.262 Sum_probs=82.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCcee--------EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVA--------EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
.....++|||+|||..+++++|+++|.+||.|. .+.+..++.++.++|||||+|.+.++|++|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCCCCC
Q 031755 111 DGRLIYVDIAKPGKDRF 127 (153)
Q Consensus 111 ~g~~l~v~~~~~~~~~~ 127 (153)
.|+.|+|.++.++..+.
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998766543
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=117.75 Aligned_cols=86 Identities=23% Similarity=0.481 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCC-CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT-KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~-g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
....++|||+|||..+++++|+++|..|| |..+.++.++.+ |.++|||||+|.+.+.|++|+ .|++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999877 899999999999999999999 899999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998866554
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=115.94 Aligned_cols=83 Identities=39% Similarity=0.579 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
..+..++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeC
Q 031755 119 IAK 121 (153)
Q Consensus 119 ~~~ 121 (153)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.8e-20 Score=121.35 Aligned_cols=83 Identities=28% Similarity=0.374 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC-c
Q 031755 41 PLASRIMVRNLPF------TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG-R 113 (153)
Q Consensus 41 ~~~~~v~v~nlp~------~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~ 113 (153)
...++|||+|||. .+++++|+++|++||.|..+.++.++.||.++|||||+|.+.++|++|+..|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4568999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred EEEEEEeCCC
Q 031755 114 LIYVDIAKPG 123 (153)
Q Consensus 114 ~l~v~~~~~~ 123 (153)
.|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=8.5e-20 Score=123.49 Aligned_cols=89 Identities=33% Similarity=0.481 Sum_probs=82.6
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 37 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
.......++|||+|||..+++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++|+..|+|..|+|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 031755 117 VDIAKPGKD 125 (153)
Q Consensus 117 v~~~~~~~~ 125 (153)
|.++.+++.
T Consensus 120 V~~a~~~~p 128 (129)
T 2kxn_B 120 VDFSITKRP 128 (129)
T ss_dssp ESCCSSSSC
T ss_pred EEEecCCCC
Confidence 999987553
No 50
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-20 Score=121.70 Aligned_cols=85 Identities=34% Similarity=0.592 Sum_probs=80.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 031755 122 PGKDR 126 (153)
Q Consensus 122 ~~~~~ 126 (153)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76653
No 51
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=117.17 Aligned_cols=89 Identities=25% Similarity=0.340 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEE-ecCCCCCceeEEEEEecCHHHHHHHHHHcC--CCccCCcEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGE-VAEVKLV-KDEITKKSKGYAFIQYTSQDDALLALESMD--HKNLDGRLI 115 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-i~~~~i~-~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l 115 (153)
....++|||+|||..+++++|+++|..||. |..+.++ .+..+|.++|||||+|.+.+.|++|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 455789999999999999999999999998 9999998 777788999999999999999999999996 589999999
Q ss_pred EEEEeCCCCCCCC
Q 031755 116 YVDIAKPGKDRFG 128 (153)
Q Consensus 116 ~v~~~~~~~~~~~ 128 (153)
+|.++.++.....
T Consensus 85 ~V~~a~~~~~~~~ 97 (109)
T 2dis_A 85 AVDWAEPEIDVDE 97 (109)
T ss_dssp EEEESCSSCSTTT
T ss_pred EEEEcCCCCCcCH
Confidence 9999987665433
No 52
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=8.5e-20 Score=123.61 Aligned_cols=88 Identities=25% Similarity=0.440 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE--EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC----ccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE--VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK----NLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~----~i~g 112 (153)
.....++|||+|||.++++++|+++|.+||.|.. |.++.++.+|.++|||||+|.+. +|.+|+..|+|. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4455789999999999999999999999999976 99999998999999999999999 999999999999 9999
Q ss_pred cEEEEEEeCCCCCCC
Q 031755 113 RLIYVDIAKPGKDRF 127 (153)
Q Consensus 113 ~~l~v~~~~~~~~~~ 127 (153)
+.|.|.++.++..+.
T Consensus 98 r~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 98 KTINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCCEECCCSCCCC
T ss_pred EEEEEEECCCCCCCC
Confidence 999999998765543
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=117.44 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=80.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 455678999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 98876554
No 54
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=4.5e-19 Score=112.63 Aligned_cols=85 Identities=31% Similarity=0.400 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||..+++++|+++|.+||.|..+.+..+ +|..+|||||+|.+.++|++|+..|++..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999999874 689999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 031755 120 AKPGKDR 126 (153)
Q Consensus 120 ~~~~~~~ 126 (153)
+.+....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9875543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8e-19 Score=113.81 Aligned_cols=86 Identities=21% Similarity=0.360 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++ +..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 45567899999999999999999999999999999999885 3468999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99875544
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.8e-19 Score=113.40 Aligned_cols=88 Identities=27% Similarity=0.454 Sum_probs=79.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
......++|||+|||..+++++|+++|..||.|..+.++.+.. .++|||||+|.+.++|++|+..|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455678999999999999999999999999999999998753 48999999999999999999999999999999999
Q ss_pred EEeCCCCCCC
Q 031755 118 DIAKPGKDRF 127 (153)
Q Consensus 118 ~~~~~~~~~~ 127 (153)
.++.++..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9998765543
No 57
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=4.5e-19 Score=115.70 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.+. +|.++|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
++.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9763
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=114.82 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQ----KEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
....++|||+|||..+++++|+ ++|.+||.|..+.++.++.+ +|||||+|.+.++|++|+..|+|..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999988754 8899999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 031755 116 YVDIAKPGKDR 126 (153)
Q Consensus 116 ~v~~~~~~~~~ 126 (153)
+|.++.++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999765543
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=3.7e-19 Score=112.29 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=76.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+ .|++..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999875
Q ss_pred C
Q 031755 123 G 123 (153)
Q Consensus 123 ~ 123 (153)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 60
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=7.5e-20 Score=124.63 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=83.2
Q ss_pred hhhccccCCCcccc-cccccCCCCC---ccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC
Q 031755 4 AAAATVSYPQPMFA-NSLTNRENPC---FRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE 79 (153)
Q Consensus 4 ~~~~~v~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 79 (153)
++++|+.++..... .+.....+.. ................++|||+|||..+++++|+++|..||.|..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 45666666664333 3333332221 1111222222344556799999999999999999999999999999999988
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCC
Q 031755 80 ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDR 126 (153)
Q Consensus 80 ~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~ 126 (153)
.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++.++..+
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 88999999999999999999999999999999999999999875443
No 61
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-18 Score=112.70 Aligned_cols=86 Identities=29% Similarity=0.509 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.+.|++|+. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998889999999999999999999999 5778999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++.+.
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886654
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=113.48 Aligned_cols=83 Identities=23% Similarity=0.321 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++. |.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345568999999999999999999999999999999999875 8999999999999999999999999999999999999
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
++++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9865
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=6.1e-19 Score=110.97 Aligned_cols=81 Identities=30% Similarity=0.487 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+. +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999997 58888999999998
Q ss_pred Ee
Q 031755 119 IA 120 (153)
Q Consensus 119 ~~ 120 (153)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.8e-19 Score=118.72 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++|++.|+|..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeC
Q 031755 119 IAK 121 (153)
Q Consensus 119 ~~~ 121 (153)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 864
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=119.26 Aligned_cols=86 Identities=20% Similarity=0.462 Sum_probs=79.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.+.|++|+.. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3458999999999999999999999999999999999988899999999999999999999997 999999999999999
Q ss_pred CCCCCCC
Q 031755 121 KPGKDRF 127 (153)
Q Consensus 121 ~~~~~~~ 127 (153)
.++..+.
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8766543
No 66
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=5.4e-19 Score=118.26 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=77.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||.++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+ .|+|..++|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6443
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=4.5e-19 Score=124.43 Aligned_cols=88 Identities=26% Similarity=0.394 Sum_probs=80.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.+.|++|+..|+|..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99875543
No 68
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=123.87 Aligned_cols=82 Identities=24% Similarity=0.347 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFG--EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
..++|||+|||.++++++|+++|..|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 031755 120 AKPG 123 (153)
Q Consensus 120 ~~~~ 123 (153)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-18 Score=113.54 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|.+||.|..+.+..+ +.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999653 5688999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99875543
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.8e-19 Score=115.14 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
.+..++|||+|||.++++++|+++|.+||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34468999999999999999999999999999888888888899999999999999999999999999999999999998
Q ss_pred eCC
Q 031755 120 AKP 122 (153)
Q Consensus 120 ~~~ 122 (153)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=4.7e-19 Score=116.41 Aligned_cols=87 Identities=25% Similarity=0.478 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+..+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4556789999999999999999999999999999999999888999999999999999999999975 588999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876554
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=109.72 Aligned_cols=84 Identities=19% Similarity=0.431 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..| .|..+.++.+ .+|.++|||||+|.+.++|++|+. |++..++|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34557899999999999999999999999 8999999998 689999999999999999999999 99999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++.+
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987654
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=114.80 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
.+..++|||+|||..+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888899999999999999999999999999999999999999
Q ss_pred eCC
Q 031755 120 AKP 122 (153)
Q Consensus 120 ~~~ 122 (153)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 74
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=117.93 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCcee----EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVA----EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~----~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
.....++|||+|||..+++++|+++|..||.|. .+.+. +|.++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 445678999999999999999999999999984 44443 6889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCC
Q 031755 115 IYVDIAKPGKDRF 127 (153)
Q Consensus 115 l~v~~~~~~~~~~ 127 (153)
|+|.++.++..+.
T Consensus 97 l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 97 LVIEFGKNKKQRS 109 (115)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998766543
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=115.04 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|++||.|..+.++.++. |.++|||||+|.+.++|++|+. +++..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344568999999999999999999999999999999999986 9999999999999999999999 89999999999999
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8764
No 76
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=115.73 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHhhccCceeEEEEEecCCCC---CceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQ---KEFSAFGEVAEVKLVKDEITK---KSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~g---~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
.....++|||+|||..+++++|+ ++|.+||.|..+.+..+..++ .++|||||+|.+.++|++|+..|+|..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 33446799999999999999999 999999999999999887644 556999999999999999999999999999
Q ss_pred cEEEEEEeCCCCC
Q 031755 113 RLIYVDIAKPGKD 125 (153)
Q Consensus 113 ~~l~v~~~~~~~~ 125 (153)
+.|+|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987664
No 77
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=6.7e-19 Score=125.72 Aligned_cols=85 Identities=26% Similarity=0.433 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|.+||.|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-20 Score=114.37 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||.++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999988876554
Q ss_pred C
Q 031755 121 K 121 (153)
Q Consensus 121 ~ 121 (153)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=115.28 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC--CccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH--KNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 116 (153)
..+..++|||+|||..+++++|+++|.+||.|..+.++++ +|||||+|.+.++|++|+..|++ ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556789999999999999999999999999999999864 58999999999999999998864 689999999
Q ss_pred EEEeCCCCCCC
Q 031755 117 VDIAKPGKDRF 127 (153)
Q Consensus 117 v~~~~~~~~~~ 127 (153)
|.+++++....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99988755443
No 80
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=5.1e-19 Score=126.17 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=90.9
Q ss_pred hccccCCCcccccccccCCCCCc--cccccccc--------cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEE
Q 031755 6 AATVSYPQPMFANSLTNRENPCF--RTFNLRAS--------LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKL 75 (153)
Q Consensus 6 ~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i 75 (153)
+|||.|..++.+......++... +....... .......++|||+|||..+++++|+++|..||.|..+.+
T Consensus 57 ~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 136 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 136 (196)
T ss_dssp EEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE
T ss_pred eEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 78999999877754444332211 11111111 112334589999999999999999999999999999999
Q ss_pred EecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCCCCC
Q 031755 76 VKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGG 129 (153)
Q Consensus 76 ~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~~~~ 129 (153)
+.+..+|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++.++.+....
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--------
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhccc
Confidence 99988899999999999999999999985 799999999999999987765443
No 81
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=110.90 Aligned_cols=86 Identities=30% Similarity=0.473 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|++|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455678999999999999999999999774 67788887789999999999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++.++.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2fc8_A 88 WAKPKGEGG 96 (102)
T ss_dssp ECCCCCSSS
T ss_pred EecCCCCCC
Confidence 998866653
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=116.37 Aligned_cols=84 Identities=24% Similarity=0.480 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC-CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE-ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.....++|||+|||.++++++|+++|..|| |..+.+..++ .+|.++|||||+|.+.++|++|+ .|+|..++|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 455678999999999999999999999999 9999999987 58999999999999999999999 79999999999999
Q ss_pred EEeCCCC
Q 031755 118 DIAKPGK 124 (153)
Q Consensus 118 ~~~~~~~ 124 (153)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9988754
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=111.62 Aligned_cols=83 Identities=31% Similarity=0.502 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.| .++.+ .++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567899999999999999999999999977 45555 578899999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987644
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.8e-19 Score=122.06 Aligned_cols=117 Identities=27% Similarity=0.363 Sum_probs=94.8
Q ss_pred hhccccCCCcccccccc-cCCCCCcc--ccccc----cccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEe
Q 031755 5 AAATVSYPQPMFANSLT-NRENPCFR--TFNLR----ASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK 77 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~-~~~~~~~~--~~~~~----~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 77 (153)
.+|||.|..++.+.... ..++.... ..... .........++|||+|||..+++++|+++|++||.|..+.+..
T Consensus 42 g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 42 NYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 36899999977774433 33333221 11111 1122455567999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 78 DEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 78 ~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
+..+|.++|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 98899999999999999999999999999999999999999975
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=111.90 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC-----cEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG-----RLI 115 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-----~~l 115 (153)
...++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.|++..+.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34689999999999999999999999999999999865 799999999999999999999999999 999
Q ss_pred EEEEeCCCCCC
Q 031755 116 YVDIAKPGKDR 126 (153)
Q Consensus 116 ~v~~~~~~~~~ 126 (153)
+|.++.++..+
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999885544
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=111.14 Aligned_cols=84 Identities=32% Similarity=0.430 Sum_probs=75.8
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC--CcE
Q 031755 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD--GRL 114 (153)
Q Consensus 37 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~--g~~ 114 (153)
....++.++|||+|||..+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|++|+..|++..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445667789999999999999999999999999999998653 679999999999999999999999999 999
Q ss_pred EEEEEeCCCCCC
Q 031755 115 IYVDIAKPGKDR 126 (153)
Q Consensus 115 l~v~~~~~~~~~ 126 (153)
|+|.++.++..+
T Consensus 85 l~V~~a~~~~~~ 96 (97)
T 1why_A 85 LRVDFAKSGPSS 96 (97)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 87
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8e-19 Score=115.25 Aligned_cols=88 Identities=28% Similarity=0.511 Sum_probs=78.7
Q ss_pred ccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc
Q 031755 34 RASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR 113 (153)
Q Consensus 34 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 113 (153)
+.........++|||+|||..+++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|++|+..|+|..++|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3344456677899999999999999999999999999999999875 45899999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q 031755 114 LIYVDIAKPG 123 (153)
Q Consensus 114 ~l~v~~~~~~ 123 (153)
.|+|+++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998865
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=2.6e-18 Score=115.06 Aligned_cols=86 Identities=24% Similarity=0.423 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|++|+..|+|..++|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44556899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9986443
No 89
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=112.36 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=72.6
Q ss_pred ccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc--cCCc
Q 031755 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN--LDGR 113 (153)
Q Consensus 36 ~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~--i~g~ 113 (153)
+....+++++|||+|||..+++++|+++|.+||.|..+.+++. +|+|||+|.+.++|.+|+..|++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 4446677889999999999999999999999999999998753 5899999999999999999999886 7899
Q ss_pred EEEEEEeCCC
Q 031755 114 LIYVDIAKPG 123 (153)
Q Consensus 114 ~l~v~~~~~~ 123 (153)
+|+|++++++
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998865
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.7e-19 Score=108.96 Aligned_cols=75 Identities=23% Similarity=0.473 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+. +++..++|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 9999999999999864
No 91
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=8.4e-19 Score=122.62 Aligned_cols=117 Identities=21% Similarity=0.323 Sum_probs=95.2
Q ss_pred hhccccCCCcccccccccCCCCCccccccccc----cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCC
Q 031755 5 AAATVSYPQPMFANSLTNRENPCFRTFNLRAS----LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI 80 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 80 (153)
.+|||.|..++.+......++........... .......++|||+|||..+++++|+++|.+||.|..+.+..++.
T Consensus 52 g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 52 NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp TEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred CEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 47899999988875544444332222221111 11334468999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 81 TKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 81 ~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
+|.++|+|||+|.+.++|++|+..|+|..++|+.|.|.++.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 89999999999999999999999999999999999999863
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1.4e-19 Score=114.57 Aligned_cols=81 Identities=35% Similarity=0.564 Sum_probs=74.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+ |++|+..|+|..++|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998764
Q ss_pred CC
Q 031755 124 KD 125 (153)
Q Consensus 124 ~~ 125 (153)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=5e-18 Score=110.15 Aligned_cols=81 Identities=38% Similarity=0.593 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||..+++++|+++|.+||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999886 35999999999999999999999999999999999
Q ss_pred eCCCCCCCC
Q 031755 120 AKPGKDRFG 128 (153)
Q Consensus 120 ~~~~~~~~~ 128 (153)
+.++..+..
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 987665443
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-20 Score=120.30 Aligned_cols=84 Identities=25% Similarity=0.423 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|..||.|..+.++.++.+|..+|||||+|.+.++|++|+ .|++..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
.++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5e-18 Score=111.96 Aligned_cols=84 Identities=18% Similarity=0.403 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc--------
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL-------- 110 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i-------- 110 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.+.|++|+..|+|..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44557899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCcEEEEEEeCCC
Q 031755 111 DGRLIYVDIAKPG 123 (153)
Q Consensus 111 ~g~~l~v~~~~~~ 123 (153)
.++.|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5778999998754
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-18 Score=108.11 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+|||.++++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4557899999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 031755 120 AKPGKDRF 127 (153)
Q Consensus 120 ~~~~~~~~ 127 (153)
+.++..+.
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98766543
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=116.79 Aligned_cols=83 Identities=27% Similarity=0.503 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
......++|||+|||..+++++|+++|.+||.|..+.++.++.+|..+|||||+|.+.++|++|+..|+|..++|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35566789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEe
Q 031755 118 DIA 120 (153)
Q Consensus 118 ~~~ 120 (153)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=111.89 Aligned_cols=78 Identities=24% Similarity=0.432 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
++|||+|||.++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|+..|++..++|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999875 6789999999999999999999999999999999999876
Q ss_pred CCC
Q 031755 124 KDR 126 (153)
Q Consensus 124 ~~~ 126 (153)
..+
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 99
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.6e-18 Score=113.74 Aligned_cols=85 Identities=26% Similarity=0.468 Sum_probs=72.9
Q ss_pred ccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc
Q 031755 34 RASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR 113 (153)
Q Consensus 34 ~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 113 (153)
..........++|||+|||..+++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|+|..++|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3344456677899999999999999999999999999999987 57999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q 031755 114 LIYVDIAKPGKDR 126 (153)
Q Consensus 114 ~l~v~~~~~~~~~ 126 (153)
.|.|.++.++..+
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999876654
No 100
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=111.29 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+|| +..+.++.++ +|.++|||||+|.+.++|++|+. +++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445568999999999999999999999999 5599999997 89999999999999999999995 79999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
.+.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-19 Score=116.81 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|++|+. |++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3345789999999999999999999999998887 555555678899999999999999999999 99999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 91 ~a~~~~~~~ 99 (101)
T 1fj7_A 91 KPKGRDGTR 99 (101)
T ss_dssp CCSCCCCSS
T ss_pred EcCCCCCCC
Confidence 998766553
No 102
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=2.4e-18 Score=124.42 Aligned_cols=121 Identities=24% Similarity=0.325 Sum_probs=95.7
Q ss_pred hhccccCCCccccccccc-CCCCCcc--cccccccc-------------CCCCCCceEEEcCCCCCCCHHHHHHHhhccC
Q 031755 5 AAATVSYPQPMFANSLTN-RENPCFR--TFNLRASL-------------SNYPLASRIMVRNLPFTTHEHTLQKEFSAFG 68 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-------------~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G 68 (153)
.+|||.|..++.+..... .++.... ........ ......++|||+|||..+++++|+++|..||
T Consensus 71 g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 150 (216)
T 2qfj_A 71 GFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 150 (216)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS
T ss_pred ceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccC
Confidence 468999998777744333 3322111 11111100 1224457999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 69 EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 69 ~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
.|..+.+..+..+|.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.++..
T Consensus 151 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 151 KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999988999999999999999999999999999999999999999887543
No 103
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=116.00 Aligned_cols=84 Identities=14% Similarity=0.280 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQ----KEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
...+.++|||+|||..+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|+|..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 6899999999988753 5788999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q 031755 115 IYVDIAKPGKD 125 (153)
Q Consensus 115 l~v~~~~~~~~ 125 (153)
|+|.++.++..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987554
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=112.83 Aligned_cols=83 Identities=29% Similarity=0.402 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 39 NYPLASRIMVRNLPFTT------HEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
.....++|||+|||..+ ++++|+.+|++||.|..+.++ +.+|.++|||||+|.+.++|++|+..|+|..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33446899999999999 789999999999999999988 3579999999999999999999999999999999
Q ss_pred c-EEEEEEeCCC
Q 031755 113 R-LIYVDIAKPG 123 (153)
Q Consensus 113 ~-~l~v~~~~~~ 123 (153)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998754
No 105
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-19 Score=108.55 Aligned_cols=76 Identities=28% Similarity=0.543 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|++|+..++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999988 9999999999876
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8e-18 Score=109.19 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC--CCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD--HKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~ 116 (153)
..+++++|||+|||..+++++|+++|.+||.|..+.++++ +|||||+|.+.++|++|+..|+ +..+.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4456789999999999999999999999999999988764 6899999999999999999874 6679999999
Q ss_pred EEEeCCCCCC
Q 031755 117 VDIAKPGKDR 126 (153)
Q Consensus 117 v~~~~~~~~~ 126 (153)
|.++.++...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999865544
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-18 Score=110.41 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC--ccCCcEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK--NLDGRLI 115 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~--~i~g~~l 115 (153)
...++.++|||+|||..+++++|+++|.+||.|..+.++++ +|||||+|.+.++|.+|+..|++. .+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34556789999999999999999999999999999998753 689999999999999999988765 4999999
Q ss_pred EEEEeCCCCCC
Q 031755 116 YVDIAKPGKDR 126 (153)
Q Consensus 116 ~v~~~~~~~~~ 126 (153)
+|.++.++...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999865543
No 108
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=113.53 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC--CccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH--KNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 116 (153)
..+++++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|+..|++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4556789999999999999999999999999999999865 68999999999999999998874 689999999
Q ss_pred EEEeCCCCCC
Q 031755 117 VDIAKPGKDR 126 (153)
Q Consensus 117 v~~~~~~~~~ 126 (153)
|.+++++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999875544
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=109.06 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=73.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|. +.++. +..+|||||+|.+.++|++|+..|+|..++|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999986 66654 3568999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.+++.
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987543
No 110
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.1e-18 Score=106.71 Aligned_cols=81 Identities=23% Similarity=0.456 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 455678999999999999999999999999999999863 399999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998765543
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.7e-18 Score=110.95 Aligned_cols=82 Identities=20% Similarity=0.490 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.+..+ +|||||+|.+.+.|++|+..|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 5566789999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876544
No 112
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=112.17 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC--ccCCcEE
Q 031755 39 NYPLASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK--NLDGRLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~--~i~g~~l 115 (153)
...++++|||+|||. .+++++|+++|.+||.|..+.++++ +|||||+|++.++|++|+..|++. .+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 344678999999999 9999999999999999999999765 479999999999999999998865 4999999
Q ss_pred EEEEeCCCC
Q 031755 116 YVDIAKPGK 124 (153)
Q Consensus 116 ~v~~~~~~~ 124 (153)
+|.+++..+
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998644
No 113
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-20 Score=122.47 Aligned_cols=88 Identities=24% Similarity=0.270 Sum_probs=81.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE--------VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
....++|||+|||..+++++|+++|.+||.|.. +.++.++.++.++|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 889998888999999999999999999999999999999
Q ss_pred CcEEEEEEeCCCCCCC
Q 031755 112 GRLIYVDIAKPGKDRF 127 (153)
Q Consensus 112 g~~l~v~~~~~~~~~~ 127 (153)
|+.|+|.++.++..+.
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876654
No 114
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=1.6e-19 Score=131.38 Aligned_cols=119 Identities=30% Similarity=0.430 Sum_probs=92.8
Q ss_pred hhccccCCCcccccc-cccCCCCCccccccccccC------CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEe
Q 031755 5 AAATVSYPQPMFANS-LTNRENPCFRTFNLRASLS------NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK 77 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 77 (153)
.+|||.|..++.+.. +...++............. .....++|||+|||..+++++|+++|..||.|..+.++.
T Consensus 58 G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 58 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeec
Confidence 368999999777643 3333333221111111111 222356899999999999999999999999999999998
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 78 DEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 78 ~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
+. +.++|||||+|.+.++|++|++.|+|..|+|+.|.|.++.++.+
T Consensus 138 d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 138 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp ET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred cC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 75 55899999999999999999999999999999999999987654
No 115
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=109.56 Aligned_cols=83 Identities=28% Similarity=0.376 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+ ..++.++|||||+|.+.++|++|+..|+|..++|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34457899999999999999999999999988766 2368899999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99876554
No 116
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=4.7e-19 Score=123.35 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=93.1
Q ss_pred hhccccCCCcccccccccCCCC-Ccccccccccc--CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCC
Q 031755 5 AAATVSYPQPMFANSLTNRENP-CFRTFNLRASL--SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT 81 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~ 81 (153)
.+|||.|..++.+......... ..+........ ......++|||+|||..+++++|+++|++||.|..+.+..++.+
T Consensus 46 g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 46 GFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp SCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred ceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 4789999998777444332111 11111111111 12233579999999999999999999999999999999999888
Q ss_pred CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 82 KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 82 g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
|.++|+|||+|.+.++|.+|+. +++..++|+.|.|.++.++
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999998 8999999999999999875
No 117
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=109.01 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
....++|||+|||..+++++|+++|.+||.|.. +.++.+ .+|.++|||||+|.+.++|++|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888887 6899999999999999999999996 9999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
.+..+.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-19 Score=117.21 Aligned_cols=84 Identities=19% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCce-eEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEV-AEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.....++|||+|||..+++++|+++|..||.| ..+.++.++ +|.++|||||+|.+.++|++|+.. ++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34557899999999999999999999999999 889999998 899999999999999999999996 999999999999
Q ss_pred EEeCCCC
Q 031755 118 DIAKPGK 124 (153)
Q Consensus 118 ~~~~~~~ 124 (153)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998654
No 119
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=105.56 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+.+ +||||+|.+.++|++|+..|+|..++|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456678999999999999999999999999999999863 399999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++..+
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99875443
No 120
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=4e-18 Score=125.63 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFG--EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
..++|||+||+..+++++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|++||..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred eCC
Q 031755 120 AKP 122 (153)
Q Consensus 120 ~~~ 122 (153)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=107.88 Aligned_cols=73 Identities=33% Similarity=0.479 Sum_probs=67.3
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc-EE
Q 031755 43 ASRIMVRNLPFTT------HEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR-LI 115 (153)
Q Consensus 43 ~~~v~v~nlp~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~-~l 115 (153)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|++|+..|+|..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999987 35799999999999999999999999999999998 77
Q ss_pred EE
Q 031755 116 YV 117 (153)
Q Consensus 116 ~v 117 (153)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=1.1e-17 Score=109.76 Aligned_cols=79 Identities=28% Similarity=0.481 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFT-THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.....++|||+|||.. +++++|+++|.+||.|..+.+ .+|||||+|.+.+.|++|+..|++..++|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 3689999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 031755 118 DIAKPGKD 125 (153)
Q Consensus 118 ~~~~~~~~ 125 (153)
.++.+.+.
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99875443
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.4e-17 Score=107.05 Aligned_cols=79 Identities=19% Similarity=0.445 Sum_probs=71.5
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 38 SNYPLASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
...+.+++|||+|||. ++++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|+|..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3566788999999998 99999999999999999999883 68999999999999999999999999999999
Q ss_pred EEEeCCCC
Q 031755 117 VDIAKPGK 124 (153)
Q Consensus 117 v~~~~~~~ 124 (153)
|+++.++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99987643
No 124
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=5.1e-18 Score=118.08 Aligned_cols=116 Identities=20% Similarity=0.377 Sum_probs=93.4
Q ss_pred hhccccCCCccccccccc-CCCCCcc--ccccccc--cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC
Q 031755 5 AAATVSYPQPMFANSLTN-RENPCFR--TFNLRAS--LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE 79 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 79 (153)
.+|||.|..++.+..... .++.... ....... .......++|||+|||..+++++|+++|++||.|..+.+..+.
T Consensus 46 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 46 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT
T ss_pred eEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC
Confidence 378999999877754443 3333222 2222111 1234567899999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEe
Q 031755 80 ITKKSKGYAFIQYTSQDDALLALESMDHKNLDG--RLIYVDIA 120 (153)
Q Consensus 80 ~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~ 120 (153)
.+|.++|+|||+|.+.++|.+|+..|+|..+.| ++|+|.++
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 889999999999999999999999999999988 99999875
No 125
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.3e-18 Score=108.72 Aligned_cols=80 Identities=21% Similarity=0.467 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
..++.++|||+|||. .+++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456688999999998 99999999999999999999984 579999999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 031755 118 DIAKPGKDR 126 (153)
Q Consensus 118 ~~~~~~~~~ 126 (153)
.++.++..+
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999875543
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.8e-18 Score=109.90 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQ----KEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
.+++++|||+|||..+++++|+ ++|.+||.|..+.+.. +|..+|||||+|.+.++|++|+..|+|..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998874 46778999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q 031755 116 YVDIAKPGKD 125 (153)
Q Consensus 116 ~v~~~~~~~~ 125 (153)
+|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=107.72 Aligned_cols=81 Identities=26% Similarity=0.376 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCc-eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC-CccCCcEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGE-VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH-KNLDGRLIYV 117 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~-i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~-~~i~g~~l~v 117 (153)
....++|||+|||.++++++|+++|.+||. +..+.+. .+|||||+|.+.++|++|+..|+| ..++|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 445789999999999999999999999999 5555552 368999999999999999999999 9999999999
Q ss_pred EEeCCCCCCC
Q 031755 118 DIAKPGKDRF 127 (153)
Q Consensus 118 ~~~~~~~~~~ 127 (153)
.++.++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9998765543
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=107.26 Aligned_cols=82 Identities=30% Similarity=0.475 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+.++ +|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 4456789999999999999999999999999999999754 5899999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99875543
No 129
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-17 Score=105.45 Aligned_cols=79 Identities=35% Similarity=0.612 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
.....++|||+|||..+++++|+++|.+| |.|..+.+. +|||||+|.+.+.|++|+..|++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34457899999999999999999999999 899988764 46999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 031755 117 VDIAKPGKD 125 (153)
Q Consensus 117 v~~~~~~~~ 125 (153)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987554
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=5.5e-18 Score=106.57 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467999999999999999999999999999999865 47999999999999999999999999999999999984
No 131
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=105.52 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||.++++++|+++|.+||.|..| +.++.+|. ||||+|.+.+.|++|+. |++..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 55554554 99999999999999999 9999999999999987
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 65443
No 132
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=113.82 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|++|+. |++..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34456899999999999999999999999999886666666689999999999999999999999 99999999999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 133
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=8.5e-18 Score=110.99 Aligned_cols=83 Identities=18% Similarity=0.375 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
+..+++|||+|||..+++++|+++|..||.|..+.++.+ +.++|||||+|.+.++|++|+..|+|..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445789999999999999999999999999999999865 55689999999999999999999999999999999999
Q ss_pred eCCCCC
Q 031755 120 AKPGKD 125 (153)
Q Consensus 120 ~~~~~~ 125 (153)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986443
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=7.2e-18 Score=111.20 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.....++|||+|||..+++++|+++|.+|| .|..+.+.. +.++|||||+|.+.++|++|+..|+|..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344567999999999999999999999999 899988853 357899999999999999999999999999999999
Q ss_pred EEeCCC
Q 031755 118 DIAKPG 123 (153)
Q Consensus 118 ~~~~~~ 123 (153)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998643
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=9.8e-18 Score=111.55 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGE---VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
....++|||+|||.++++++|+++|..||. |..+.++.++. |.++|||||+|.+.++|++|+. +++..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345689999999999999999999999999 89999999876 9999999999999999999999 999999999999
Q ss_pred EEEeCCCC
Q 031755 117 VDIAKPGK 124 (153)
Q Consensus 117 v~~~~~~~ 124 (153)
|.++..+.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=2.2e-17 Score=119.97 Aligned_cols=84 Identities=24% Similarity=0.426 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
.+.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred CCCC
Q 031755 121 KPGK 124 (153)
Q Consensus 121 ~~~~ 124 (153)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6543
No 137
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.5e-18 Score=112.56 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=72.6
Q ss_pred CceEEEcCC----CCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecC----HHH----HHHHHH--HcCCC
Q 031755 43 ASRIMVRNL----PFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTS----QDD----ALLALE--SMDHK 108 (153)
Q Consensus 43 ~~~v~v~nl----p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~----~~~----a~~a~~--~l~~~ 108 (153)
++.|||+|| |+.+++.+|+.+|++||+|..+.++.++.||.++|||||+|.| ++. |.+|+. .++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 579999999 9999999999999999999999999999999999999999996 333 788888 78999
Q ss_pred ccCCcEEEEEEeCC
Q 031755 109 NLDGRLIYVDIAKP 122 (153)
Q Consensus 109 ~i~g~~l~v~~~~~ 122 (153)
.|+|++|+|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=8e-18 Score=116.74 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=91.6
Q ss_pred hhccccCCCccccccccc-CCCCCcccccccccc----CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC
Q 031755 5 AAATVSYPQPMFANSLTN-RENPCFRTFNLRASL----SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE 79 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 79 (153)
.+|||.|..++.+..... .++............ ......++|||+|||..+++++|+++|.+||.|..+.+..+.
T Consensus 45 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 45 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC
Confidence 478999999877744433 333322211111111 133456899999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE--EEEEEe
Q 031755 80 ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL--IYVDIA 120 (153)
Q Consensus 80 ~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~--l~v~~~ 120 (153)
.+|.++|+|||+|.+.++|.+|+..|+|..+.|+. |+|.+|
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 88999999999999999999999999999999965 777764
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=2e-18 Score=105.59 Aligned_cols=75 Identities=27% Similarity=0.454 Sum_probs=71.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+. +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999999 5889999999998864
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=9.8e-18 Score=114.30 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGE---VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
.....++|||+|||.++++++|+++|.+||. |..+.++.++. |.++|||||+|.+.++|++|+. +++..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3455689999999999999999999999999 88999999986 9999999999999999999999 99999999999
Q ss_pred EEEEeCC
Q 031755 116 YVDIAKP 122 (153)
Q Consensus 116 ~v~~~~~ 122 (153)
+|..+.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998764
No 141
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=8e-18 Score=108.68 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
..+..++|||+|||.++++++|+++|.+||.|..+.+.. .+|||||+|.+.++|++|+..|+|..++|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 444568999999999999999999999999999999873 46899999999999999999999999999999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+++++
T Consensus 97 ~a~~~ 101 (101)
T 2la4_A 97 WGKER 101 (101)
T ss_dssp BCCCC
T ss_pred eccCC
Confidence 98763
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=4.1e-17 Score=113.13 Aligned_cols=83 Identities=30% Similarity=0.555 Sum_probs=78.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|+|||+|.+.++|++|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999999886
Q ss_pred CCC
Q 031755 123 GKD 125 (153)
Q Consensus 123 ~~~ 125 (153)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 143
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=102.81 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc-CCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM-DHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v 117 (153)
.....++|||+|||..+++++|+++|.+||.|..+.+.++ +|||||+|.+.+.|++|+..| ++..++|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3455789999999999999999999999999999999864 689999999999999999998 999999999999
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
++++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9864
No 144
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=3.9e-17 Score=130.50 Aligned_cols=85 Identities=28% Similarity=0.545 Sum_probs=80.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|..+|.+||.|..|.|+.+..+|.++|||||+|.+.+.|++||..|+|..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87554
No 145
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=2.6e-17 Score=113.54 Aligned_cols=81 Identities=25% Similarity=0.494 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|++|+..|+|..++|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 5566789999999999999999999999999999999765 57899999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
++.+++
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 988754
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=109.60 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC--CccCCcEEE
Q 031755 40 YPLASRIMVRNLPFT-THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH--KNLDGRLIY 116 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~--~~i~g~~l~ 116 (153)
..++++|||+|||.+ +++++|+++|.+||.|..+.+++. +|||||+|.+.++|++|+..|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556889999999998 999999999999999999999743 68999999999999999998864 469999999
Q ss_pred EEEeCCCCCC
Q 031755 117 VDIAKPGKDR 126 (153)
Q Consensus 117 v~~~~~~~~~ 126 (153)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999865543
No 147
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=7.6e-18 Score=108.98 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|++|+. ++..++|+.|.|..+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999998 8999999999999988
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6544
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.2e-17 Score=114.01 Aligned_cols=84 Identities=26% Similarity=0.471 Sum_probs=79.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|++|+..|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=112.09 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEE--------EEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEV--------KLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~--------~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
.....++|||+|||..+++++|+.+|..||.|..+ .+. .+|.++|||||+|.+.+.|.+|+..|+|..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 45567899999999999999999999999988763 332 2588999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCCCC
Q 031755 111 DGRLIYVDIAKPGKDR 126 (153)
Q Consensus 111 ~g~~l~v~~~~~~~~~ 126 (153)
.|+.|.|.++.+...+
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999865543
No 150
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.8e-17 Score=116.72 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||..+++++|+++|.+||.|..|.+..+. +|.++|||||+|.+.++|++|+..|++..++|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
++.+.
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98753
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=2.3e-17 Score=109.29 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=66.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE-----EE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL-----IY 116 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~-----l~ 116 (153)
..++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|+..|++..|+|+. ++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3589999999999999999999999999999998754 89999999999999999999999999988 77
Q ss_pred EEEeCCCCC
Q 031755 117 VDIAKPGKD 125 (153)
Q Consensus 117 v~~~~~~~~ 125 (153)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 777665443
No 152
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=1.1e-17 Score=117.32 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=89.7
Q ss_pred hhccccCCCcccccccccCCCCCc--ccccccccc----CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEec
Q 031755 5 AAATVSYPQPMFANSLTNRENPCF--RTFNLRASL----SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKD 78 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~ 78 (153)
.+|||.|..++.+......++... +........ ......++|||+|||..+++++|+++|.+||.|..+
T Consensus 55 g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----- 129 (175)
T 1fje_B 55 KFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----- 129 (175)
T ss_dssp TEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----
T ss_pred cEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----
Confidence 478999999877754444433222 122211111 133356899999999999999999999999988766
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 79 EITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 79 ~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
..++.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.+++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 4578999999999999999999999999999999999999998753
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=103.91 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEE-EEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEV-KLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
...++|||+|||..+++++|+++|..||.|..+ .++.++.++ .|||+|.+.+.|++|+..|+|..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446899999999999999999999999999999 477765433 399999999999999999999999999999999
Q ss_pred eCCCC
Q 031755 120 AKPGK 124 (153)
Q Consensus 120 ~~~~~ 124 (153)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=7.7e-17 Score=114.79 Aligned_cols=86 Identities=22% Similarity=0.504 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 455678999999999999999999999999999999999988899999999999999999999985 8899999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.+...
T Consensus 88 ~~~~~~~ 94 (196)
T 1l3k_A 88 RAVSRED 94 (196)
T ss_dssp ECCC---
T ss_pred cccCccc
Confidence 9876543
No 155
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=109.62 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCc---eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGE---VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
.....++|||+|||..+++++|+++|..||. |..+.++.++. |.++|||||+|.+.++|++|+. +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3455789999999999999999999999998 89999999886 9999999999999999999999 99999999999
Q ss_pred EEEEeCCC
Q 031755 116 YVDIAKPG 123 (153)
Q Consensus 116 ~v~~~~~~ 123 (153)
+|..+.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998753
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-16 Score=101.68 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|| .+++++|+++|.+||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445789999996 89999999999999999999984 456899999999999999999999999999999999
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++.++..+.
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.7e-17 Score=113.72 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=89.9
Q ss_pred hhccccCCCcccccccc-cCCCCC-----cccc---ccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEE
Q 031755 5 AAATVSYPQPMFANSLT-NRENPC-----FRTF---NLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKL 75 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~-~~~~~~-----~~~~---~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i 75 (153)
.+|||.|..++.+.... ..++.. .... ............++|||+|||..+++++|+++|++||.|..+.+
T Consensus 48 g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 48 GCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 37899999977764332 222211 1111 11222223446789999999999999999999999999999999
Q ss_pred EecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC---CcEEEEEEeC
Q 031755 76 VKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD---GRLIYVDIAK 121 (153)
Q Consensus 76 ~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~v~~~~ 121 (153)
..+. +|.++|||||+|.+.++|.+|+..|+|..+. |++|.|.++.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9986 5899999999999999999999999998776 4899999863
No 158
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=106.43 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|+++|..| .|..+.|+.++. |.++|||||+|.+.++|++|+ .+++..|+|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999875 999999999999999999999 5999999999999988764
No 159
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=106.34 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=70.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|+++|.+||.|..+.++. .+|||||+|.+.++|++|+..|+|..+.|+.|.|.++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57999999999999999999999999999998864 467999999999999999999999999999999999875
Q ss_pred CC
Q 031755 123 GK 124 (153)
Q Consensus 123 ~~ 124 (153)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 160
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=7.3e-17 Score=121.49 Aligned_cols=119 Identities=26% Similarity=0.324 Sum_probs=98.0
Q ss_pred hhccccCCCcccccccc-cCCCCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCC
Q 031755 5 AAATVSYPQPMFANSLT-NRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKK 83 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~ 83 (153)
.+|||.|..++.+.... ..++........... ..+..++|||+|||..+++++|+++|..||.|..+.++.+..+|.
T Consensus 58 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 58 GTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ--LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEE--ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE--ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 47899999988774443 334333322222222 244568999999999999999999999999999999999988999
Q ss_pred ceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 84 SKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.++..
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999999999876543
No 161
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=9.4e-18 Score=114.79 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|.+|| +..+.|+.++. |.++|||||+|.+.++|++|+ .+++..|+|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 455678999999999999999999999999 77999999875 999999999999999999999 689999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
.+.+....
T Consensus 119 ~a~~~~~~ 126 (139)
T 2hgn_A 119 LNSTTGAS 126 (139)
T ss_dssp ECCCSCC-
T ss_pred ECCCCCCC
Confidence 98765543
No 162
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=99.91 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=67.0
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhhcc-CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 41 PLASR-IMVRNLPFTTHEHT----LQKEFSAF-GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 41 ~~~~~-v~v~nlp~~~~~~~----l~~~f~~~-G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
+++.+ |||+|||..+++++ |+.+|.+| |+|..| ++ |+|||+|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 44555 99999999999887 55899999 599998 24 89999999999999999999999999999
Q ss_pred EEEEEeCCCCCC
Q 031755 115 IYVDIAKPGKDR 126 (153)
Q Consensus 115 l~v~~~~~~~~~ 126 (153)
|+|.+++.+++-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999876653
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=1.3e-16 Score=100.62 Aligned_cols=75 Identities=17% Similarity=0.311 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|.+| .|..+.+. .++|||||+|.+.++|++|+..|+|..++|+.|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 89999884 467999999999999999999999999999999999986
Q ss_pred CC
Q 031755 122 PG 123 (153)
Q Consensus 122 ~~ 123 (153)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=5e-16 Score=108.53 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=70.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEe
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG--RLIYVDIA 120 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~ 120 (153)
..+|||+||+..+++++|+++|++||+|..+.+... ..+|||||+|.+.++|++|++.|+|..|.| +.|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 357899999999999999999999999999998653 357899999999999999999999999965 99999999
Q ss_pred CCCC
Q 031755 121 KPGK 124 (153)
Q Consensus 121 ~~~~ 124 (153)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=6e-17 Score=122.41 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=91.3
Q ss_pred hhccccCCCccccccccc-CCCCCcccccccccc-----------CCCCCCceEEEcCCCCC-CCHHHHHHHhhccCcee
Q 031755 5 AAATVSYPQPMFANSLTN-RENPCFRTFNLRASL-----------SNYPLASRIMVRNLPFT-THEHTLQKEFSAFGEVA 71 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~ 71 (153)
.+|||.|..++.+..... .++...........+ ......++|||+|||.. +++++|+++|..||.|.
T Consensus 160 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 160 RFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 468899988777644333 332211111111111 23345689999999999 99999999999999999
Q ss_pred EEEEEecCC-CCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 72 EVKLVKDEI-TKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 72 ~~~i~~~~~-~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
.+.++.+.. ||.++|||||+|.+.++|.+|+ .|+|..++|+.|.|.++.+++
T Consensus 240 ~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 240 KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 999998865 5899999999999999999999 999999999999999998763
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=1e-16 Score=120.73 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=94.3
Q ss_pred hccccCCCcccccccc-cCCCCCcc--cccc-----ccccCCCCCCceEEEcCCCCCC-CHHHHHHHhhccCceeEEEEE
Q 031755 6 AATVSYPQPMFANSLT-NRENPCFR--TFNL-----RASLSNYPLASRIMVRNLPFTT-HEHTLQKEFSAFGEVAEVKLV 76 (153)
Q Consensus 6 ~~~v~~~~~~~~~~~~-~~~~~~~~--~~~~-----~~~~~~~~~~~~v~v~nlp~~~-~~~~l~~~f~~~G~i~~~~i~ 76 (153)
+|||.|..+..+.... ..++.... .... ..........++|||+|||..+ ++++|+++|+.||.|..+.+.
T Consensus 139 ~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 139 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 6889998877664333 33322111 1111 1111234567899999999995 999999999999999999999
Q ss_pred ecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 77 KDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 77 ~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
.+. +|.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.++..
T Consensus 219 ~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 219 CGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 986 699999999999999999999999999999999999999987665
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=4.5e-16 Score=105.02 Aligned_cols=77 Identities=27% Similarity=0.388 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeE-EEEEecCHHHHHHHHHHcCCCccCC--cEEEEEE
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGY-AFIQYTSQDDALLALESMDHKNLDG--RLIYVDI 119 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~ 119 (153)
.-.|||+||+..+++++|+++|++||.|.++.+... .+|| |||+|.+.++|++|++.|+|..|.| +.|+|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 347889999999999999999999999999988764 2577 9999999999999999999999988 8999999
Q ss_pred eCCCC
Q 031755 120 AKPGK 124 (153)
Q Consensus 120 ~~~~~ 124 (153)
++++.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98754
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=104.67 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc-----C
Q 031755 39 NYPLASRIMV--RNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL-----D 111 (153)
Q Consensus 39 ~~~~~~~v~v--~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i-----~ 111 (153)
...++++||| |||+..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..|+|..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445679999 779999999999999999999999887542 68999999999999999999999988 6
Q ss_pred CcEEEEEEeCCCC
Q 031755 112 GRLIYVDIAKPGK 124 (153)
Q Consensus 112 g~~l~v~~~~~~~ 124 (153)
|+.|+|.++...+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8899999987543
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=107.22 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCce----eEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEV----AEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i----~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
...++|||+|||.++++++|+++|.+||.| ..|.|+.+. +|.++|||||+|.+.++|++|+.. ++..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 689999884 899999999999999999999995 99999999999
Q ss_pred EEEeCCC
Q 031755 117 VDIAKPG 123 (153)
Q Consensus 117 v~~~~~~ 123 (153)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887643
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.6e-16 Score=107.69 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=74.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|+|||+|.+.++|++|+..|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 4789999999999999999999999999999999999998765
Q ss_pred CC
Q 031755 124 KD 125 (153)
Q Consensus 124 ~~ 125 (153)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.4e-16 Score=99.78 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=62.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc--cCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN--LDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~ 116 (153)
.....++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4556789999999999999999999999999999998763 68999999999999884 45554 5699999
Q ss_pred EEEeCCCCC
Q 031755 117 VDIAKPGKD 125 (153)
Q Consensus 117 v~~~~~~~~ 125 (153)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999887654
No 172
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=1.4e-16 Score=107.24 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCcee--EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVA--EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
.....++|||+|||..+++++|+++|.+| .|. .|.|+.++. |.++|||||+|.+.++|++|+. +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34456899999999999999999999999 577 899999876 9999999999999999999998 578899999999
Q ss_pred EEEeCC
Q 031755 117 VDIAKP 122 (153)
Q Consensus 117 v~~~~~ 122 (153)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988764
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=3.7e-16 Score=112.83 Aligned_cols=83 Identities=33% Similarity=0.539 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||.++++++|+++|..||.|..+.++.+..+|..+|||||+|.+.++|++|+..|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999998888999999999999999999999999999999999999887
Q ss_pred CCC
Q 031755 121 KPG 123 (153)
Q Consensus 121 ~~~ 123 (153)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=100.43 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|+++.. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999998753 68999999999999986533 233568999999998
Q ss_pred CCCCCCC
Q 031755 121 KPGKDRF 127 (153)
Q Consensus 121 ~~~~~~~ 127 (153)
.++..+.
T Consensus 76 ~~~~~~~ 82 (88)
T 1wf0_A 76 EPKHNSN 82 (88)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8765543
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-16 Score=101.87 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCC---CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT---KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
...++|||+|||.++++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++|+..|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4468999999999999999999999999999 888777666 7899999999999999999999884 367777766
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=1.9e-16 Score=118.36 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=92.4
Q ss_pred hhccccCCCcccccccc-cCCCCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCC
Q 031755 5 AAATVSYPQPMFANSLT-NRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKK 83 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~ 83 (153)
.+|||.|..++.+.... ..++............ ....++|||+|||..+++++|+++|..||.|..+.++.+ .+|.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~--a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF--ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGR 135 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE--CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSC
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeee--cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCC
Confidence 46899999987774443 3443333222222222 234679999999999999999999999999999999998 4899
Q ss_pred ceeEEEEEecCHHHHHHHHHHcCCC-ccC---CcEEEEEEeCCCCC
Q 031755 84 SKGYAFIQYTSQDDALLALESMDHK-NLD---GRLIYVDIAKPGKD 125 (153)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~-~i~---g~~l~v~~~~~~~~ 125 (153)
++|+|||+|.+.++|.+|+..|++. .+. |+.|.|.++.+...
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 9999999999999999999999554 343 89999999886543
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=2.5e-16 Score=118.98 Aligned_cols=118 Identities=13% Similarity=0.228 Sum_probs=90.4
Q ss_pred hhccccCCCcccccccccCCCCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCC
Q 031755 5 AAATVSYPQPMFANSLTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKK 83 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~ 83 (153)
.+|||.|..++.+......++.......... .....++|||+|||..+++++|+++|..|| .|..+.++.+.. |.
T Consensus 82 g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~ 157 (292)
T 2ghp_A 82 RFARIEFARYDGALAAITKTHKVVGQNEIIV---SHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NT 157 (292)
T ss_dssp EEEEEEESSHHHHHHHHTTTTCEETTEECEE---EECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------
T ss_pred EEEEEEECCHHHHHHHHHhCCcEeCCcEEEE---EECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CC
Confidence 4799999998888555555443332222222 223578999999999999999999999999 999999998864 78
Q ss_pred ceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCC
Q 031755 84 SKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDR 126 (153)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~ 126 (153)
++|||||+|.+.+.|.+|+..|+|..+.|+.|.|.++.+....
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 8999999999999999999999999999999999998875543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=6.8e-16 Score=111.87 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 42 LASRIMVRNLP-FTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 42 ~~~~v~v~nlp-~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
.+++|||+||| ..+++++|+++|++||.|..+.++.+ .+|||||+|.+.++|++|+..|+|..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 79999999999999999999999764 3689999999999999999999999999999999998
Q ss_pred CCCC
Q 031755 121 KPGK 124 (153)
Q Consensus 121 ~~~~ 124 (153)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=1.3e-15 Score=106.27 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC--CceeEEEEEecCHHHHHHHHHHcCCCccC---CcEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK--KSKGYAFIQYTSQDDALLALESMDHKNLD---GRLIY 116 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g--~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~~l~ 116 (153)
..++|||+|||..+++++|+++|.+||.|..+.++.++.++ .++|||||+|.+.++|++|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998765 57777
Q ss_pred EEEeCCCC
Q 031755 117 VDIAKPGK 124 (153)
Q Consensus 117 v~~~~~~~ 124 (153)
+..+.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 77766543
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.8e-15 Score=101.43 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeE-EEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEeC
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGY-AFIQYTSQDDALLALESMDHKNLDG--RLIYVDIAK 121 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~ 121 (153)
.|||+||+..+++++|+.+|++||.|..+.+... .|| |||+|.+.++|.+|+..|+|..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999998652 276 9999999999999999999999987 689999998
Q ss_pred CCC
Q 031755 122 PGK 124 (153)
Q Consensus 122 ~~~ 124 (153)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 754
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=3.2e-15 Score=97.51 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhhccCceeEEEEEecCCC-CCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 41 PLASRIMVRNLPF-----TTHEHTLQKEFSAFGEVAEVKLVKDEIT-KKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 41 ~~~~~v~v~nlp~-----~~~~~~l~~~f~~~G~i~~~~i~~~~~~-g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
.++++|+|.||.. +-.+++|++.|++||.|..+.|+.++.+ +.++|++||+|.+.++|++|+..|+|..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999962 2367899999999999999999988643 688999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 031755 115 IYVDIAKP 122 (153)
Q Consensus 115 l~v~~~~~ 122 (153)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=1.2e-15 Score=101.97 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|+ .+++++|+++|.+||.|..+.+. ..+|||||+|.+.++|++|+..|+|..++|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999996 69999999999999999999985 456899999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987543
No 183
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=9.7e-16 Score=96.00 Aligned_cols=71 Identities=30% Similarity=0.514 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAF----G-------EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
..++|||+|||..+++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|++|+ .|+|..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46799999999999999999999999 8 8999988654 689999999999999999 8999999
Q ss_pred CCcEEEEEE
Q 031755 111 DGRLIYVDI 119 (153)
Q Consensus 111 ~g~~l~v~~ 119 (153)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999873
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=3e-15 Score=112.49 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQ----KEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
+....++|||+|||..+++++|+ ++|..||.|..|.+.+ +|..+|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44567899999999999999976 8999999999999876 5889999999999999999999999999999999
Q ss_pred EEEEEeCCCC
Q 031755 115 IYVDIAKPGK 124 (153)
Q Consensus 115 l~v~~~~~~~ 124 (153)
|+|.++..+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997655
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=9.6e-16 Score=106.46 Aligned_cols=79 Identities=25% Similarity=0.524 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+. ++..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 36799999999999999999999999999999999998899999999999999999999999 4668899999888775
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=4.3e-15 Score=106.70 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|+++|++||.|..+.++++. +|.++|||||+|.+.++|++|+..+ +..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999986 5889999999999999999999855 5589999999998765
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=109.14 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-CcEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-GRLIYVD 118 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~ 118 (153)
++.++|||+|||..+++++|+++|..|| .|..+.+... .+|+|||+|.+.++|.+|+..|+|..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998653 2689999999999999999999999999 9999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98763
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=2e-15 Score=110.77 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-CcEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-GRLIYVD 118 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~ 118 (153)
++.++|||+|||..+++++|+++|.+|| .|..+.+... .+|+|||+|.+.++|.+|+..|+|..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999998642 2689999999999999999999999999 9999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98763
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=1.1e-14 Score=106.86 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
..+.+++|||+|||. .+++++|+++|..||.|..+.+..++ +|||||+|.+.++|++|+..|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998764 789999999999999999999999999999999
Q ss_pred EEeCCCC
Q 031755 118 DIAKPGK 124 (153)
Q Consensus 118 ~~~~~~~ 124 (153)
.++.+..
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9998653
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=3.6e-15 Score=110.29 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 40 YPLASRIMVRNLPFTT---------HEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~---------~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
....++||||||+..+ ++++|+.+|.+||.|..|.++.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456899999999998 79999999999999999999854 68999999999999999999999999
Q ss_pred ------------CCcEEEEEEeCCCCCC
Q 031755 111 ------------DGRLIYVDIAKPGKDR 126 (153)
Q Consensus 111 ------------~g~~l~v~~~~~~~~~ 126 (153)
.|+.|.|.++.+++..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=2.3e-14 Score=107.68 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-CcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-GRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v 117 (153)
..+..++|||+|||..+++++|+++|..||.|..+.+..++ +|+|||+|.+.++|.+|+..|+|..+. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 45567899999999999999999999999999999998653 589999999999999999999999999 999999
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
.+++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9975
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=1e-14 Score=104.19 Aligned_cols=77 Identities=26% Similarity=0.427 Sum_probs=71.7
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 43 ASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 43 ~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
+++|||+|||. .+++++|+++|..||.|..+.+..++ +|||||+|.+.++|++|+..|+|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998754 6899999999999999999999999999999999988
Q ss_pred CCC
Q 031755 122 PGK 124 (153)
Q Consensus 122 ~~~ 124 (153)
+..
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7e-14 Score=91.89 Aligned_cols=83 Identities=19% Similarity=0.349 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC
Q 031755 39 NYPLASRIMVRNLPFTTH-----------EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~-----------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (153)
...++++|+|.||..... +++|+++|.+||.|..+.| .++ .++|||||+|.+.++|++|+..|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 455678999999944332 5799999999999999966 442 3789999999999999999999999
Q ss_pred CccCCcEEEEEEeCCCCC
Q 031755 108 KNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 108 ~~i~g~~l~v~~~~~~~~ 125 (153)
..++|+.|.|.++.++..
T Consensus 87 ~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp CEETTEECEEEECCSCCC
T ss_pred CEECCcEEEEEEeCCCCC
Confidence 999999999999887544
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.9e-15 Score=105.89 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..||.+..+ ++.+..+|.++|||||+|.+.++|++|++ |+|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 44567899999999999999999999999876652 22333467889999999999999999995 99999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9876543
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=2.7e-14 Score=103.39 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCce--eEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc----E
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEV--AEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR----L 114 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i--~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~----~ 114 (153)
+++++|||+|||..+++++|+++|++||.| ..+.+..+. +.++|+|||+|.+.++|.+|+..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999999 888888764 56679999999999999999999999999886 4
Q ss_pred EEEEEe
Q 031755 115 IYVDIA 120 (153)
Q Consensus 115 l~v~~~ 120 (153)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 565554
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=1.1e-13 Score=98.55 Aligned_cols=77 Identities=26% Similarity=0.477 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAF----G-------EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
..++|||+|||..+++++|+++|..| | .|..+.+ +..+|||||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555555 445789999999999999999 7999999
Q ss_pred CCcEEEEEEeCCCCC
Q 031755 111 DGRLIYVDIAKPGKD 125 (153)
Q Consensus 111 ~g~~l~v~~~~~~~~ 125 (153)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999876543
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=8.1e-14 Score=104.06 Aligned_cols=78 Identities=29% Similarity=0.502 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..||.|..+.+.++ +|||||+|.+.+.|.+|+..|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 4455689999999999999999999999999999998643 5899999999999999999999999999999999
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=5.6e-14 Score=91.54 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhhccCceeEEEEEecCCC--CCceeEEEEEecCHHHHHHHHHHcCCCc
Q 031755 42 LASRIMVRNL--PFTTH--------EHTLQKEFSAFGEVAEVKLVKDEIT--KKSKGYAFIQYTSQDDALLALESMDHKN 109 (153)
Q Consensus 42 ~~~~v~v~nl--p~~~~--------~~~l~~~f~~~G~i~~~~i~~~~~~--g~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (153)
+++.|.|.|+ |..+. +++|++.|++||.|..+.|++++.+ +.++|++||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678899998 33443 3689999999999999999988654 3678999999999999999999999999
Q ss_pred cCCcEEEEEEeCC
Q 031755 110 LDGRLIYVDIAKP 122 (153)
Q Consensus 110 i~g~~l~v~~~~~ 122 (153)
++|+.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=1e-13 Score=96.54 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=66.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----C-------ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAF----G-------EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
..++|||+|||..+++++|+++|.+| | .|..+.+. ..+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 36799999999999999999999999 6 66666664 34789999999999999999 7999999
Q ss_pred CCcEEEEEEeCCC
Q 031755 111 DGRLIYVDIAKPG 123 (153)
Q Consensus 111 ~g~~l~v~~~~~~ 123 (153)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=2.3e-13 Score=90.45 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=70.2
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHhhccCceeEEEEEecCC----CCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 42 LASRIMVRNLPF--TT---HEHTLQKEFSAFGEVAEVKLVKDEI----TKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 42 ~~~~v~v~nlp~--~~---~~~~l~~~f~~~G~i~~~~i~~~~~----~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
++++|+|.|+-. ++ -+++|++.|++||.|..+.|+.++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 22 3578999999999999999998754 35678999999999999999999999999999
Q ss_pred cEEEEEEeCC
Q 031755 113 RLIYVDIAKP 122 (153)
Q Consensus 113 ~~l~v~~~~~ 122 (153)
+.|++.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=3.1e-14 Score=92.59 Aligned_cols=72 Identities=17% Similarity=0.410 Sum_probs=61.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 48 VRNLPFTTHEHTLQKEF------------SAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 48 v~nlp~~~~~~~l~~~f------------~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
+.+|+..+++++|++.| ++||.|..+.++++. ++.++|||||+|.+.++|++|+..|+|..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44555666666666555 999999999999876 47899999999999999999999999999999999
Q ss_pred EEEEe
Q 031755 116 YVDIA 120 (153)
Q Consensus 116 ~v~~~ 120 (153)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99885
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.9e-12 Score=81.60 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 53 FTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 53 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
..+++++|+++|.+||.|..+.++ +.++|||||+|.+.++|+.|+..+++ +.|+.|+|.++.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999987 46789999999999999999997544 6799999999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=9.6e-13 Score=101.97 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC---Cc
Q 031755 39 NYPLASRIMVRN--LPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD---GR 113 (153)
Q Consensus 39 ~~~~~~~v~v~n--lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g~ 113 (153)
...++.+||||| |+..+++++|+++|++||+|..+.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456678999999 578899999999999999999987753 3689999999999999999999999773 44
Q ss_pred --EEEEEEeC
Q 031755 114 --LIYVDIAK 121 (153)
Q Consensus 114 --~l~v~~~~ 121 (153)
.+++.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=1.5e-11 Score=81.07 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCC----------HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 41 PLASRIMVRNLPFTTH----------EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~----------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
.+++.|.|.|+=..-. +++|++.|++||.|..+.+.++. .+|++||+|.+.++|++|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3466788888832211 34788999999999999986542 489999999999999999999999999
Q ss_pred CCcEEEEEEeCC
Q 031755 111 DGRLIYVDIAKP 122 (153)
Q Consensus 111 ~g~~l~v~~~~~ 122 (153)
+|+.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999863
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=75.74 Aligned_cols=74 Identities=23% Similarity=0.437 Sum_probs=62.1
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 41 PLASRIMVRNLPF----TTHE----HTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 41 ~~~~~v~v~nlp~----~~~~----~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
|+.-||+|...+. .+-. .+|...|.+||.|..+++..++ +||+|.+.++|.+|+. |+|..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4556888877662 2323 5788899999999999998763 8999999999999998 99999999
Q ss_pred cEEEEEEeCCC
Q 031755 113 RLIYVDIAKPG 123 (153)
Q Consensus 113 ~~l~v~~~~~~ 123 (153)
+.|+|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998753
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-10 Score=77.36 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecC-HHHHHHHHHHcC--CCccCCcE
Q 031755 39 NYPLASRIMVRNLPFT-THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTS-QDDALLALESMD--HKNLDGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~-~~~a~~a~~~l~--~~~i~g~~ 114 (153)
..+.++.|+|+||+.. ++.++|+++|++||+|..|.+..+.. .|||.|.+ .+.|+.++..|+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 5567899999999999 99999999999999999999987753 59999999 899999999994 66899988
Q ss_pred EEEEEeC
Q 031755 115 IYVDIAK 121 (153)
Q Consensus 115 l~v~~~~ 121 (153)
+.++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.9e-10 Score=71.22 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=62.9
Q ss_pred CCCCCceEEEcCCCCC------CCH---HHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc
Q 031755 39 NYPLASRIMVRNLPFT------THE---HTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN 109 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~------~~~---~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (153)
.-|+.-||+|..++.. ..+ .+|.+.|.+||++..+++..++ +||+|.+.++|.+|+. |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456679999888642 332 4688899999999999998763 9999999999999999 99999
Q ss_pred cCCcEEEEEEeCC
Q 031755 110 LDGRLIYVDIAKP 122 (153)
Q Consensus 110 i~g~~l~v~~~~~ 122 (153)
++|+.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.9e-09 Score=78.30 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=59.3
Q ss_pred CHHHHHHHhhccCceeEEEEEecC----CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 56 HEHTLQKEFSAFGEVAEVKLVKDE----ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 56 ~~~~l~~~f~~~G~i~~~~i~~~~----~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+++|.+.|.+||.|..+.+.++. .++.++|++||+|.+.++|++|+..|+|..++|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999998553 345899999999999999999999999999999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=4.4e-07 Score=58.56 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc-----CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAF-----GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~-----G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
..++|-|-|||..+++..|+.++.++ |.+..+.+..+. +.|+|+|.|...|.+|...|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36789999999999999999999999 999999998875 4899999999999999999999999999999
Q ss_pred EEE
Q 031755 117 VDI 119 (153)
Q Consensus 117 v~~ 119 (153)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=3.5e-05 Score=49.29 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=64.8
Q ss_pred CCCceEEEcCCCCCC-C----HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 41 PLASRIMVRNLPFTT-H----EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~-~----~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
..+++++|.||+.++ . .+.++.+|..|+++......+.- .-.-|.|.+.+.|.+|-..|++..+.|+.+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 456799999998754 2 25778999999999998887653 256899999999999999999999999999
Q ss_pred EEEEeCC
Q 031755 116 YVDIAKP 122 (153)
Q Consensus 116 ~v~~~~~ 122 (153)
+|-++++
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999884
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00051 Score=43.78 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=62.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-----cCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSA-----FGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~-----~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
....+|.|.|||+.+.++.|+-+|++ -|.+..+.... +-|+|+|.+.+.|++.+. -....+.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 34679999999999999999999976 36888887643 478999999999999988 23778999999
Q ss_pred EEEEeCCCCC
Q 031755 116 YVDIAKPGKD 125 (153)
Q Consensus 116 ~v~~~~~~~~ 125 (153)
.|....++..
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987665443
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.93 E-value=4.4e-05 Score=48.22 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=50.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD 106 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 106 (153)
.....+.++| .+|+.+...||.++|+.|| ...|..+.+. .|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4455678888 9999999999999999999 6677777663 89999999999999998763
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=0.00024 Score=44.49 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=57.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC--CceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK--KSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g--~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
++|.|++||+.++++++.+.+....++....++....+. ...+.|||.|.+.+.+....+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 589999999999999999999999888777777765433 24588999999999999999999998653
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.65 E-value=8.9e-05 Score=46.93 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD 106 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 106 (153)
.+.++| ++|+.+...||..+|+.|| ...|..+.+. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 467788 9999999999999999999 6677777663 89999999999999999764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0029 Score=41.42 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC-cEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG-RLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~~l~v~ 118 (153)
....+.|.|-++|+... +.+...|.+||.|.+..... ...+..|.|.+..+|++|+. .||..++| .-|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 33467899999998864 55778899999999887621 23599999999999999999 69999985 556666
Q ss_pred EeC
Q 031755 119 IAK 121 (153)
Q Consensus 119 ~~~ 121 (153)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.44 E-value=0.0029 Score=39.90 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=51.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC--CceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK--KSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g--~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
+-+|.|+.||+.++++++.+.+...-++....++....+. ..-+.|||.|.+.+....-.+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4589999999999999998888766554433443332222 23467999999999999999999998653
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.64 E-value=0.012 Score=39.10 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=55.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEec------------CCCC-CceeEEEEEecCHHHHHHHHHHcCCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKD------------EITK-KSKGYAFIQYTSQDDALLALESMDHK 108 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~------------~~~g-~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (153)
.+.|.|-++|+..... +...|++||.|.+ ...... +..+ ....+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3578888998777655 6677999999876 221110 0000 124688999999999999999 6999
Q ss_pred ccCCcEEEEEEeC
Q 031755 109 NLDGRLIYVDIAK 121 (153)
Q Consensus 109 ~i~g~~l~v~~~~ 121 (153)
.++|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777764
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.61 E-value=0.017 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC
Q 031755 72 EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK 108 (153)
Q Consensus 72 ~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (153)
++.+..+. +..+||+||+|.+.+.|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 34555554 468999999999999999999887754
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.56 E-value=0.01 Score=39.74 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCceeEEEEEecCHHHHHHHHHHc-CCCccCCcEEEEEEeCC
Q 031755 82 KKSKGYAFIQYTSQDDALLALESM-DHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 82 g~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v~~~~~ 122 (153)
+..+|+++++|.+.+.|++|+..+ +|..++| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 9999999 899887764
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.41 E-value=0.011 Score=47.36 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=43.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHH
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~ 103 (153)
.....+.|+|. .|..+++.+|.++|++||.|..+.+-.+. | -|+.|+|.+.+++++++.
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 33345799997 79999999999999999999998887653 2 799999999999887765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.27 E-value=0.6 Score=37.74 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=45.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (153)
.+.++++ +|..+...+|.+.|+.||. ..|..+.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4577776 8889999999999999993 45555443 3799999999999999998754
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=91.83 E-value=0.015 Score=37.34 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=14.7
Q ss_pred hccccCCCcccccc-cccCCCCCc--cccccc----------cccCCCCCCceEEEcCCCCCCCHHH
Q 031755 6 AATVSYPQPMFANS-LTNRENPCF--RTFNLR----------ASLSNYPLASRIMVRNLPFTTHEHT 59 (153)
Q Consensus 6 ~~~v~~~~~~~~~~-~~~~~~~~~--~~~~~~----------~~~~~~~~~~~v~v~nlp~~~~~~~ 59 (153)
+|||.|..++.+.. +...++... +..... .........++|||+|||+.+|++.
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 47 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred eEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 68999999877744 333333211 111110 0111233446899999999998763
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=82.12 E-value=4 Score=23.60 Aligned_cols=59 Identities=8% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhhccC-----ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 54 TTHEHTLQKEFSAFG-----EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 54 ~~~~~~l~~~f~~~G-----~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+...+|..++..-+ .|-.+.+.. .|.||+... +.+..++..|++..+.|+.+.++.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 355567777776544 344566633 378998875 45788888899999999999887653
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.58 E-value=1.2e+02 Score=20.64 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHh--hccCceeEEEEEecCCCCCceeEEEEEec-CHHHHHHHHH
Q 031755 45 RIMVRNLPFT---------THEHTLQKEF--SAFGEVAEVKLVKDEITKKSKGYAFIQYT-SQDDALLALE 103 (153)
Q Consensus 45 ~v~v~nlp~~---------~~~~~l~~~f--~~~G~i~~~~i~~~~~~g~~~g~~fv~f~-~~~~a~~a~~ 103 (153)
++.|-|+|.. .+..+|++.| ..|..+. +..+.++ ....|++.|.|. |-.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 5667787761 3346788866 8898655 5555543 346789999997 5556666665
No 225
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.44 E-value=1.4e+02 Score=18.44 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhhc-cC---ceeEE-EEEecCCCCCceeEEEEEecCHHHHHHHH
Q 031755 53 FTTHEHTLQKEFSA-FG---EVAEV-KLVKDEITKKSKGYAFIQYTSQDDALLAL 102 (153)
Q Consensus 53 ~~~~~~~l~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~~fv~f~~~~~a~~a~ 102 (153)
...+..+|++.+.. |+ ++..+ .+.++...|.+.|||.| |.|.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677788776653 33 33333 44455555677888855 77777666543
No 226
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.74 E-value=1.5e+02 Score=18.42 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhh-ccC---ceeEE-EEEecCCCCCceeEEEEEecCHHHHHH
Q 031755 53 FTTHEHTLQKEFS-AFG---EVAEV-KLVKDEITKKSKGYAFIQYTSQDDALL 100 (153)
Q Consensus 53 ~~~~~~~l~~~f~-~~G---~i~~~-~i~~~~~~g~~~g~~fv~f~~~~~a~~ 100 (153)
...+..+|++-+. .|+ +++.+ .+.++...|.+.|||.| |.|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3567777877664 333 33333 44445555778888865 788777664
No 227
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=20.45 E-value=1.6e+02 Score=18.16 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhhc-cC---ceeEE-EEEecCCCCCceeEEEEEecCHHHHHH
Q 031755 53 FTTHEHTLQKEFSA-FG---EVAEV-KLVKDEITKKSKGYAFIQYTSQDDALL 100 (153)
Q Consensus 53 ~~~~~~~l~~~f~~-~G---~i~~~-~i~~~~~~g~~~g~~fv~f~~~~~a~~ 100 (153)
...+..+|++-+.. |+ ++..+ .+.++...|++.|||.| |.|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888776653 33 33333 45555556778888865 777776653
Done!