BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031756
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 112 ITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGG 147
+T +E+K+H + W ++G VYN+SPYM++HPGG
Sbjct: 8 VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGG 43
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 106 QSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPG--GMAISLC 153
++ + T+++V +H S W + G+VY+L+PY+ HPG GM + C
Sbjct: 4 EATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWC 53
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H+ S W +L +VY+L+ Y++ HPGG +
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEV 45
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 103 LKGQSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ QS+K + T++E+K+H S W +L +VY+L+ +++ HPGG +
Sbjct: 1 MAAQSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEV 50
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 103 LKGQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ GQ + +T ++EV +H + S W VL GRVY+L+ ++ HPGG +
Sbjct: 1 MNGQGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEV 51
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 106 QSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
QS+K + T++E+++H+ S W +L +VY+L+ +++ HPGG +
Sbjct: 3 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEV 49
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 106 QSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
QS+K + T++E+++H+ S W +L +VY+L+ +++ HPGG +
Sbjct: 4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEV 50
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG A+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAV 43
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome
B5
Length = 82
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG A+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAV 43
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG A+
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAV 43
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H+ S W +L +VY+L+ +++ HPGG +
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEV 45
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H+ S W +L +VY+L+ +++ HPGG +
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEV 45
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ Y++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEV 43
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+K+H S W +L +VY+L+ +++ HPGG +
Sbjct: 5 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEV 45
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H+ S W +L +VY+L+ +++ HPGG +
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEV 45
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 49
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 45
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H S W +L +VY+L+ +++ HPGG +
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEV 50
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ HPGG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEV 43
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGG 147
+ T++E+++H + S W +L +VY+L+ +++ HPGG
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGG 40
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGG 147
+ T++E+++H + S W +L +VY+L+ +++ HPGG
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGG 40
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGG 147
+ T++E+++H + S W +L +VY+L+ +++ HPGG
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGG 40
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 104 KGQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
KGQ + +T ++EV + S +W V+ GRVY+++ ++ HPGG + L
Sbjct: 1 KGQEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLL 52
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 49
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 49
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 49
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 49
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 49
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 2 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 44
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 95
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG +
Sbjct: 2 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDV 44
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 113 TMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
T +EV +H ++ +W + G V++++ + K HPGG I
Sbjct: 7 TKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVI 44
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 105 GQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
GQ + +T ++EV + + W VL GRVY+L+ ++ HPGG +
Sbjct: 2 GQGSDPAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEV 50
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
+ T++E+++H + S W ++ +VY+++ ++ HPGG + L
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLL 45
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
++EV + + W V+ GRVY+++ ++ HPGG I L
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILL 47
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
+ T++E+++H + S W +L +VY+L+ +++ H GG +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEV 43
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
++EV + + W V+ GRVY+L+ ++ HPGG +
Sbjct: 9 LEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEV 45
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
++EV + + W V+ GRVY+++ ++ HPGG + L
Sbjct: 7 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLL 45
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
++EV + + W V+ GRVY+++ ++ HPGG + L
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLL 47
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 105 GQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
GQ + +T ++EV + + W V+ GRVY+++ ++ HPGG + L
Sbjct: 2 GQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLL 52
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 106 QSNKRLITMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
Q + + T +EV H S E +W L V++++ ++ HPGG
Sbjct: 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGG 43
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 111 LITMDEVKQHQSEGSMWTVLKGRVYNLSPY 140
L+ + +++ H ++G WTV+ G+VY++ +
Sbjct: 25 LVRIADLENHNNDGGFWTVIDGKVYDIKDF 54
>pdb|1QX6|A Chain A, Crystal Structure Of Sortase B Complexed With E-64
Length = 214
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 42 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFXDFRNELKNLN 92
>pdb|1QWZ|A Chain A, Crystal Structure Of Sortase B From S. Aureus Complexed
With Mtset
pdb|1QXA|A Chain A, Crystal Structure Of Sortase B Complexed With Gly3
Length = 235
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 63 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLN 113
>pdb|1NG5|A Chain A, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
pdb|1NG5|B Chain B, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
Length = 215
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 43 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLN 93
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152
+ T EV ++ ++ W ++ VY+++ ++ HPGG + +
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLI 49
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGG 147
T +EV +H+S E +W V++++ +++ HPGG
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGG 43
>pdb|1YIR|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|B Chain B, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|C Chain C, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
pdb|1YIR|D Chain D, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase
Length = 408
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 61 AAGTSVKVASRKPASRAKVPFEKGYSQVDWLRLTQTHPDLAGLK 104
A + V+ +R PA+ + E+ + DWLR + +LAG K
Sbjct: 131 AMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFK 174
>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E.
Coli
Length = 431
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 96 THPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAI 150
T P+ G+ S ++T D+V Q E +W +KG + Y F G+ I
Sbjct: 225 TGPNTGGMGAYSPAPVVT-DDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI 278
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 26.2 bits (56), Expect = 8.5, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 2 NNDNDFTFCKVEKNQSSDADGSVENQSSGFLWKQDELPSKTNKTVGFLSYNVIDASSS 59
N D +F K Q++D S+ + LW+ D L + K F+ V+D + +
Sbjct: 62 NTSTDGSFLKERNAQNTD---SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN 116
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 FCKVEKNQSSDADGSVENQSSGFLWKQDELPS 40
+C KN S +G++ N ++GF + LPS
Sbjct: 43 WCYYSKNHSYHVEGNLVNTNAGFTARLKNLPS 74
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 FCKVEKNQSSDADGSVENQSSGFLWKQDELPS 40
+C KN S +G++ N ++GF + LPS
Sbjct: 43 WCYYSKNHSYHVEGNLVNTNAGFTARLKNLPS 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,665,247
Number of Sequences: 62578
Number of extensions: 164651
Number of successful extensions: 292
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 67
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)