Query 031756
Match_columns 153
No_of_seqs 173 out of 1132
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 04:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0536 Flavohemoprotein b5+b5 99.9 1.8E-27 4E-32 185.2 7.3 77 74-153 35-111 (145)
2 KOG0537 Cytochrome b5 [Energy 99.7 2.5E-17 5.5E-22 125.9 2.8 45 109-153 4-48 (124)
3 COG5274 CYB5 Cytochrome b invo 99.6 6.6E-16 1.4E-20 123.5 6.2 74 76-152 19-92 (164)
4 PLN02252 nitrate reductase [NA 99.5 2.2E-14 4.7E-19 137.6 4.5 83 70-152 465-560 (888)
5 PF00173 Cyt-b5: Cytochrome b5 99.5 1.8E-14 3.9E-19 97.8 2.4 42 111-152 1-42 (76)
6 PLN03198 delta6-acyl-lipid des 99.2 7.6E-12 1.6E-16 114.4 2.6 43 109-152 103-145 (526)
7 PLN03199 delta6-acyl-lipid des 99.1 4.1E-11 8.9E-16 108.1 4.5 44 107-152 21-64 (485)
8 KOG4576 Sulfite oxidase, heme- 98.8 3.3E-09 7.2E-14 84.0 2.4 47 107-153 77-124 (167)
9 COG4892 Predicted heme/steroid 97.5 8.6E-05 1.9E-09 53.2 2.9 30 110-139 2-32 (81)
10 KOG1110 Putative steroid membr 96.8 0.002 4.3E-08 52.9 4.6 46 107-152 53-102 (183)
11 PF14901 Jiv90: Cleavage induc 84.3 0.55 1.2E-05 34.9 1.3 14 128-141 59-72 (94)
12 KOG1108 Predicted heme/steroid 83.1 1.1 2.4E-05 38.7 2.9 39 110-148 60-102 (281)
13 KOG0720 Molecular chaperone (D 60.8 4.4 9.4E-05 37.9 1.2 13 129-141 382-394 (490)
14 KOG4232 Delta 6-fatty acid des 49.7 11 0.00023 34.9 1.8 39 109-147 7-67 (430)
15 PF11698 V-ATPase_H_C: V-ATPas 34.0 3.4 7.4E-05 31.7 -3.3 18 134-151 65-82 (119)
16 PF05521 Phage_H_T_join: Phage 30.4 53 0.0012 21.8 2.5 20 123-142 64-83 (95)
17 PF02069 Metallothio_Pro: Prok 22.3 33 0.00071 23.0 0.2 21 128-148 23-43 (52)
18 TIGR02148 Fibro_Slime fibro-sl 22.1 85 0.0018 23.2 2.4 23 117-139 21-44 (90)
19 PHA02131 hypothetical protein 21.6 68 0.0015 22.3 1.7 22 117-138 21-44 (70)
20 PF02797 Chal_sti_synt_C: Chal 21.5 22 0.00047 27.9 -0.9 12 141-152 63-74 (151)
No 1
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.94 E-value=1.8e-27 Score=185.24 Aligned_cols=77 Identities=38% Similarity=0.775 Sum_probs=71.4
Q ss_pred CccccccCCCCcChhhHHHhhcCCCCccCCcCCCCCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCcccccC
Q 031756 74 ASRAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISLC 153 (153)
Q Consensus 74 ~~r~KvpL~pG~S~ldW~rL~~s~~~L~g~~~~~~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl~ 153 (153)
..|.|++|.||+++|||.+|+.++++|+|.. .+..+|.+||++|++.+||||+|+|+|||||+||+|||||.++||+
T Consensus 35 r~R~K~~l~PG~s~mdW~rL~~s~~~lag~~---~~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk 111 (145)
T KOG0536|consen 35 RKRTKVALAPGHSQMDWSRLTASGKNLAGVE---SPIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMK 111 (145)
T ss_pred cccceeecCCCcchhhHHHHhccCccccccc---CCCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHH
Confidence 3399999999999999999999999999874 4567999999999999999999999999999999999999998874
No 2
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.66 E-value=2.5e-17 Score=125.87 Aligned_cols=45 Identities=29% Similarity=0.738 Sum_probs=42.4
Q ss_pred CcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCcccccC
Q 031756 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISLC 153 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl~ 153 (153)
.+.|+.+||++||+.+||||+|+|+|||||+|+++||||.++|++
T Consensus 4 ~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~ 48 (124)
T KOG0537|consen 4 LKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLE 48 (124)
T ss_pred cccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHH
Confidence 578999999999999999999999999999999999999988863
No 3
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.62 E-value=6.6e-16 Score=123.51 Aligned_cols=74 Identities=32% Similarity=0.595 Sum_probs=67.4
Q ss_pred cccccCCCCcChhhHHHhhcCCCCccCCcCCCCCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 76 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 76 r~KvpL~pG~S~ldW~rL~~s~~~L~g~~~~~~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
++++.+.|++..++|.-+.....+|.+. +....++.+||.+|++.+||||+|+|+|||||.|+++||||+++|+
T Consensus 19 ~~~~~~~~d~~~~~~~~~~~~~~di~~~---~~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~ 92 (164)
T COG5274 19 TNKLYAGKDHAALDWDSLVQEHADILND---ESPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIK 92 (164)
T ss_pred ceeeecCccHHHHhHHHhhcchhhhccC---CccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeeh
Confidence 9999999999999999998887777543 2456799999999999999999999999999999999999999986
No 4
>PLN02252 nitrate reductase [NADPH]
Probab=99.48 E-value=2.2e-14 Score=137.60 Aligned_cols=83 Identities=28% Similarity=0.504 Sum_probs=65.5
Q ss_pred CCCCCccccccCCCCcChhhHHHhhcCCCC-------ccC------CcCCCCCcccCHHHHHhhcCCCCeEEEEcCeEee
Q 031756 70 SRKPASRAKVPFEKGYSQVDWLRLTQTHPD-------LAG------LKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYN 136 (153)
Q Consensus 70 ~~~p~~r~KvpL~pG~S~ldW~rL~~s~~~-------L~g------~~~~~~~~~it~eEv~kHn~~~d~WivI~GkVYD 136 (153)
......||+||++||...++||+..+.... +.. ++.....+.|+++||++|++.++|||+|+|+|||
T Consensus 465 ~~~~~~~f~hp~~~~~~~ggwm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~h~~~~~~Wivi~g~VYD 544 (888)
T PLN02252 465 KGEIGLVFEHPTQPGNQSGGWMAKQKHLETASAAAPALKKSVSTPFMNTNTGSKQYTMSEVRKHNSEDSCWIVVHGHVYD 544 (888)
T ss_pred CCcceEEEeCCCCccCCCCCcchhhhhcccccccccccccccCCcccCCccccceeCHHHHHhhCcCCCeEEEECCEEEe
Confidence 345678999999999999999986433211 100 0011134789999999999999999999999999
Q ss_pred cCcccccCCCCccccc
Q 031756 137 LSPYMKFHPGGMAISL 152 (153)
Q Consensus 137 VT~Fl~~HPGG~~iLl 152 (153)
+|+|+..||||.++|+
T Consensus 545 vT~fl~~HPGG~~~I~ 560 (888)
T PLN02252 545 CTRFLKDHPGGADSIL 560 (888)
T ss_pred CHHHHHHCCChHHHHH
Confidence 9999999999998775
No 5
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.47 E-value=1.8e-14 Score=97.80 Aligned_cols=42 Identities=31% Similarity=0.815 Sum_probs=38.8
Q ss_pred ccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 111 LITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 111 ~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
.||++||++|+..++|||+|+|+|||||+|+..||||..+|.
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~ 42 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILK 42 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHH
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHH
Confidence 379999999999999999999999999999999999976654
No 6
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.19 E-value=7.6e-12 Score=114.42 Aligned_cols=43 Identities=30% Similarity=0.626 Sum_probs=40.0
Q ss_pred CcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
.+.+|++|+++|++++||||+|+|+|||||+|++.||||. +|+
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~ 145 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VIS 145 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHH
Confidence 4689999999999999999999999999999999999997 553
No 7
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.13 E-value=4.1e-11 Score=108.14 Aligned_cols=44 Identities=32% Similarity=0.666 Sum_probs=39.5
Q ss_pred CCCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 107 ~~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
...+.+|++||++|++++||||+|+|+|||||+|+ .||||. +|+
T Consensus 21 ~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~ 64 (485)
T PLN03199 21 EKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIF 64 (485)
T ss_pred ccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHH
Confidence 34577999999999999999999999999999997 799997 554
No 8
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=98.77 E-value=3.3e-09 Score=84.00 Aligned_cols=47 Identities=30% Similarity=0.633 Sum_probs=42.2
Q ss_pred CCCcccCHHHHHhhcCC-CCeEEEEcCeEeecCcccccCCCCcccccC
Q 031756 107 SNKRLITMDEVKQHQSE-GSMWTVLKGRVYNLSPYMKFHPGGMAISLC 153 (153)
Q Consensus 107 ~~~~~it~eEv~kHn~~-~d~WivI~GkVYDVT~Fl~~HPGG~~iLl~ 153 (153)
..+.+|+.|||.+|+++ +.+||.+.--|||||+|++.||||.+|||.
T Consensus 77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillA 124 (167)
T KOG4576|consen 77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLA 124 (167)
T ss_pred hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeee
Confidence 44678999999999985 469999999999999999999999999873
No 9
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=97.50 E-value=8.6e-05 Score=53.22 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=26.5
Q ss_pred cccCHHHHHhhcCCC-CeEEEEcCeEeecCc
Q 031756 110 RLITMDEVKQHQSEG-SMWTVLKGRVYNLSP 139 (153)
Q Consensus 110 ~~it~eEv~kHn~~~-d~WivI~GkVYDVT~ 139 (153)
+.||+|||.++|.++ .++|.++|.||||+.
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~ 32 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSL 32 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeecc
Confidence 679999999999754 699999999999964
No 10
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=96.80 E-value=0.002 Score=52.90 Aligned_cols=46 Identities=22% Similarity=0.446 Sum_probs=36.2
Q ss_pred CCCcccCHHHHHhhcCCC---CeEEEEcCeEeecCcccc-cCCCCccccc
Q 031756 107 SNKRLITMDEVKQHQSEG---SMWTVLKGRVYNLSPYMK-FHPGGMAISL 152 (153)
Q Consensus 107 ~~~~~it~eEv~kHn~~~---d~WivI~GkVYDVT~Fl~-~HPGG~~iLl 152 (153)
+..+.||.+||++++..+ ..++.|+|+|||||.=-. |-|||..-++
T Consensus 53 P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~~f 102 (183)
T KOG1110|consen 53 PKVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPYSLF 102 (183)
T ss_pred CcccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCchhh
Confidence 344579999999998654 499999999999998553 5699986543
No 11
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=84.30 E-value=0.55 Score=34.93 Aligned_cols=14 Identities=21% Similarity=0.805 Sum_probs=11.9
Q ss_pred EEEcCeEeecCccc
Q 031756 128 TVLKGRVYNLSPYM 141 (153)
Q Consensus 128 ivI~GkVYDVT~Fl 141 (153)
...+|+|||||+++
T Consensus 59 ~c~~g~VyDiTeWA 72 (94)
T PF14901_consen 59 ACMDGKVYDITEWA 72 (94)
T ss_pred EEcCceEEehhhhh
Confidence 34699999999986
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=83.06 E-value=1.1 Score=38.70 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=30.8
Q ss_pred cccCHHHHHhhcCCC---CeEEEEcCeEeecCccc-ccCCCCc
Q 031756 110 RLITMDEVKQHQSEG---SMWTVLKGRVYNLSPYM-KFHPGGM 148 (153)
Q Consensus 110 ~~it~eEv~kHn~~~---d~WivI~GkVYDVT~Fl-~~HPGG~ 148 (153)
..||.|||++++..+ ..++.|-|.||||+.=. .|-||+.
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~s 102 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCS 102 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCC
Confidence 579999999999644 38999999999999854 2336654
No 13
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.76 E-value=4.4 Score=37.91 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=11.6
Q ss_pred EEcCeEeecCccc
Q 031756 129 VLKGRVYNLSPYM 141 (153)
Q Consensus 129 vI~GkVYDVT~Fl 141 (153)
+.+|||||||++.
T Consensus 382 c~DgkVYDITeWA 394 (490)
T KOG0720|consen 382 CMDGKVYDITEWA 394 (490)
T ss_pred ecCCceEeehhhh
Confidence 4699999999987
No 14
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=49.69 E-value=11 Score=34.93 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=31.7
Q ss_pred CcccCHHHHHhhcCCCCeEEEEcCe---------------------EeecCc-ccccCCCC
Q 031756 109 KRLITMDEVKQHQSEGSMWTVLKGR---------------------VYNLSP-YMKFHPGG 147 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d~WivI~Gk---------------------VYDVT~-Fl~~HPGG 147 (153)
.+.+++|++++|++.++.|++|+|. ==|+|+ |..+|||-
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~ 67 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDGVYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGT 67 (430)
T ss_pred ceeeeccchhhccCCCceEEEeeccccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCCh
Confidence 4589999999999999999999932 236665 77899986
No 15
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.01 E-value=3.4 Score=31.74 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=15.1
Q ss_pred EeecCcccccCCCCcccc
Q 031756 134 VYNLSPYMKFHPGGMAIS 151 (153)
Q Consensus 134 VYDVT~Fl~~HPGG~~iL 151 (153)
.|||..|+.+||.|..+|
T Consensus 65 c~Dig~~vr~~p~gr~ii 82 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNII 82 (119)
T ss_dssp HHHHHHHHHH-GGGHHHH
T ss_pred hcchHHHHHHChhHHHHH
Confidence 489999999999998775
No 16
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=30.43 E-value=53 Score=21.75 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=14.0
Q ss_pred CCCeEEEEcCeEeecCcccc
Q 031756 123 EGSMWTVLKGRVYNLSPYMK 142 (153)
Q Consensus 123 ~~d~WivI~GkVYDVT~Fl~ 142 (153)
..+..|+++|++|+|....+
T Consensus 64 ~~~~ri~~~g~~y~I~~i~~ 83 (95)
T PF05521_consen 64 TPDMRIKYDGKVYNIKSIDP 83 (95)
T ss_dssp STTEEEEECTEEEEE-S--E
T ss_pred CcceEEEECCEEEEEEEECC
Confidence 45677889999999998543
No 17
>PF02069 Metallothio_Pro: Prokaryotic metallothionein; InterPro: IPR000518 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ]. An empirical classification into three classes was proposed by Kojima [], with class III MTs including atypical polypeptides composed of gamma-glutamylcysteinyl units. Class I and class II MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. The MT superfamily is subdivided into families, subfamilies, subgroups, and isolated isoforms and alleles. The metallothionein superfamily comprises all polypeptides that resemble equine renal metallothionein in several respects [], e.g., low molecular weight; high metal content; amino acid composition with high Cys and low aromatic residue content; unique sequence with characteristic distribution of cysteines, and spectroscopic manifestations indicative of metal thiolate clusters. A MT family subsumes MTs that share particular sequence-specific features and are thought to be evolutionarily related. Fifteen MT families have been characterised, each family being identified by its number and its taxonomic range. Family 14 consists of prokaryota MTs. Its members are recognised by the sequence pattern K-C-A-C-x(2)-C-L-C.The taxonomic range of the members extends to cyanobacteria. Known characteristics are: 53 to 56 AAs; 9 conserved Cys; one conserved tyrosine residue; one conserved histidine residue; contain other unusual residues. ; GO: 0046872 metal ion binding; PDB: 1JJD_A.
Probab=22.26 E-value=33 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=15.9
Q ss_pred EEEcCeEeecCcccccCCCCc
Q 031756 128 TVLKGRVYNLSPYMKFHPGGM 148 (153)
Q Consensus 128 ivI~GkVYDVT~Fl~~HPGG~ 148 (153)
|..+||+|--..-+.-||.|+
T Consensus 23 i~~dGk~YCS~aCA~gH~~~e 43 (52)
T PF02069_consen 23 IQKDGKYYCSEACANGHPNGE 43 (52)
T ss_dssp EESSS-EESSHHHHHTSSS--
T ss_pred HHhCCEeeecHHHhccCCCCC
Confidence 556899999999999999876
No 18
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=22.12 E-value=85 Score=23.20 Aligned_cols=23 Identities=9% Similarity=0.452 Sum_probs=16.7
Q ss_pred HHhhcCCCCeEEEEcCe-EeecCc
Q 031756 117 VKQHQSEGSMWTVLKGR-VYNLSP 139 (153)
Q Consensus 117 v~kHn~~~d~WivI~Gk-VYDVT~ 139 (153)
.-.....+|.||-|+|+ |.|+--
T Consensus 21 ~F~F~GDDDvWVFIn~kLv~DlGG 44 (90)
T TIGR02148 21 YFEFRGDDDVWVFINNKLVVDIGG 44 (90)
T ss_pred EEEEEcCCeEEEEECCEEEEEccC
Confidence 33456788999999988 666643
No 19
>PHA02131 hypothetical protein
Probab=21.61 E-value=68 Score=22.33 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=16.6
Q ss_pred HHhhcCCC-CeEEEE-cCeEeecC
Q 031756 117 VKQHQSEG-SMWTVL-KGRVYNLS 138 (153)
Q Consensus 117 v~kHn~~~-d~WivI-~GkVYDVT 138 (153)
++-|..-+ .|||.+ +|+|-|+|
T Consensus 21 irgh~~~g~~c~imfk~~~v~dct 44 (70)
T PHA02131 21 IRGHYRFGISCWIMFKNDQVIDCT 44 (70)
T ss_pred eccceecceEEEEEEcCCCEEEee
Confidence 34455544 699998 89999987
No 20
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=21.55 E-value=22 Score=27.89 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=8.2
Q ss_pred cccCCCCccccc
Q 031756 141 MKFHPGGMAISL 152 (153)
Q Consensus 141 l~~HPGG~~iLl 152 (153)
.-.||||.+||-
T Consensus 63 wavHPGG~~ILd 74 (151)
T PF02797_consen 63 WAVHPGGRKILD 74 (151)
T ss_dssp EEEE-SSHHHHH
T ss_pred eeecCChHHHHH
Confidence 346999998873
Done!