Query 031756
Match_columns 153
No_of_seqs 173 out of 1132
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ner_A Cytochrome B5 type B; h 99.6 1.1E-16 3.6E-21 115.2 3.9 46 107-152 7-52 (92)
2 1mj4_A Sulfite oxidase; cytoch 99.6 3.4E-17 1.1E-21 115.1 1.0 44 109-152 4-48 (82)
3 1cxy_A Cytochrome B5; helix, b 99.6 1.7E-16 5.7E-21 113.2 4.4 45 108-152 6-50 (90)
4 1cyo_A Cytochrome B5; electron 99.6 1.2E-16 4.3E-21 114.7 3.1 44 109-152 4-47 (93)
5 2ibj_A Cytochrome B5, CYTB5; F 99.6 1.7E-16 5.8E-21 112.5 3.5 45 108-152 5-49 (88)
6 3lf5_A Cytochrome B5 reductase 99.6 1.3E-16 4.3E-21 114.0 2.7 45 108-152 4-48 (88)
7 1x3x_A Cytochrome B5; hemoprot 99.6 2.9E-16 9.8E-21 110.1 3.8 43 109-152 3-45 (82)
8 1hko_A Cytochrome B5; electron 99.6 2.1E-16 7.1E-21 116.1 2.9 45 108-152 7-51 (104)
9 2keo_A Probable E3 ubiquitin-p 99.6 5.4E-16 1.8E-20 115.6 1.1 45 108-152 22-66 (112)
10 1kbi_A Cytochrome B2, L-LCR; f 99.3 2.6E-13 8.7E-18 121.6 3.0 46 107-152 6-51 (511)
11 1j03_A Putative steroid bindin 99.3 1.4E-12 4.7E-17 95.5 4.5 41 110-150 3-47 (102)
12 2bii_A Nitrate reductase [NADP 49.9 5.1 0.00017 35.2 1.1 28 74-102 383-411 (424)
13 2bih_A Nitrate reductase [NADP 42.6 6.7 0.00023 35.0 0.7 28 74-102 433-461 (474)
No 1
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.63 E-value=1.1e-16 Score=115.17 Aligned_cols=46 Identities=30% Similarity=0.704 Sum_probs=43.0
Q ss_pred CCCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 107 ~~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
+.++.||++||++|++.++|||+|+|+|||||+|+..||||.++|+
T Consensus 7 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~ 52 (92)
T 3ner_A 7 TSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLL 52 (92)
T ss_dssp CCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHH
T ss_pred CCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHH
Confidence 4568899999999999999999999999999999999999998765
No 2
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.63 E-value=3.4e-17 Score=115.05 Aligned_cols=44 Identities=27% Similarity=0.678 Sum_probs=39.4
Q ss_pred CcccCHHHHHhhcCCCC-eEEEEcCeEeecCcccccCCCCccccc
Q 031756 109 KRLITMDEVKQHQSEGS-MWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d-~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
++.||++||++|+++++ |||+|+|+|||||+|+.+||||.++|+
T Consensus 4 ~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il 48 (82)
T 1mj4_A 4 THIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLM 48 (82)
T ss_dssp CCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHH
T ss_pred CCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHH
Confidence 57899999999999998 999999999999999999999966554
No 3
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.63 E-value=1.7e-16 Score=113.22 Aligned_cols=45 Identities=33% Similarity=0.781 Sum_probs=42.2
Q ss_pred CCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 108 ~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
..+.||++||++|+++++|||+|+|+|||||+|+..||||.++|+
T Consensus 6 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~ 50 (90)
T 1cxy_A 6 TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMML 50 (90)
T ss_dssp CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTG
T ss_pred cCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHH
Confidence 457899999999999999999999999999999999999998775
No 4
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.62 E-value=1.2e-16 Score=114.74 Aligned_cols=44 Identities=30% Similarity=0.702 Sum_probs=41.4
Q ss_pred CcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
.+.||++||++|++.++|||+|+|+|||||+|+.+||||.++|+
T Consensus 4 ~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~ 47 (93)
T 1cyo_A 4 VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLR 47 (93)
T ss_dssp CCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHH
T ss_pred CCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHH
Confidence 57899999999999999999999999999999999999998764
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.62 E-value=1.7e-16 Score=112.45 Aligned_cols=45 Identities=22% Similarity=0.630 Sum_probs=41.9
Q ss_pred CCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 108 ~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
..+.||++||++|++.++|||+|+|+|||||+|+..||||.++|+
T Consensus 5 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~ 49 (88)
T 2ibj_A 5 DVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLI 49 (88)
T ss_dssp CCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHH
T ss_pred cCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHH
Confidence 357899999999999999999999999999999999999987765
No 6
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=113.96 Aligned_cols=45 Identities=38% Similarity=0.793 Sum_probs=42.1
Q ss_pred CCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 108 ~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
.++.||++||++|+++++|||+|+|+|||||+|+.+||||.++|+
T Consensus 4 ~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~ 48 (88)
T 3lf5_A 4 RLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELM 48 (88)
T ss_dssp SSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHH
T ss_pred CCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhh
Confidence 468899999999999999999999999999999999999998765
No 7
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.61 E-value=2.9e-16 Score=110.13 Aligned_cols=43 Identities=30% Similarity=0.729 Sum_probs=40.3
Q ss_pred CcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 109 ~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
.+.||++||++|++.++|||+|+|+|||||+|+.+|||| ++|+
T Consensus 3 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~ 45 (82)
T 1x3x_A 3 DKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVIL 45 (82)
T ss_dssp SCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGG
T ss_pred CCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhh
Confidence 367999999999999999999999999999999999999 7765
No 8
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.60 E-value=2.1e-16 Score=116.09 Aligned_cols=45 Identities=29% Similarity=0.685 Sum_probs=42.3
Q ss_pred CCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 108 ~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
..+.||++||++|++.++|||+|+|+|||||+|+.+||||.++|+
T Consensus 7 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~ 51 (104)
T 1hko_A 7 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLR 51 (104)
T ss_dssp CCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHH
T ss_pred cCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHH
Confidence 467899999999999999999999999999999999999998775
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-16 Score=115.62 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=42.3
Q ss_pred CCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 108 ~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
..+.||++||++|++.++|||+|+|+|||||+|+.+||||.++|+
T Consensus 22 ~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~ 66 (112)
T 2keo_A 22 KVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILA 66 (112)
T ss_dssp CCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTG
T ss_pred CCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhh
Confidence 357899999999999999999999999999999999999998876
No 10
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.34 E-value=2.6e-13 Score=121.63 Aligned_cols=46 Identities=35% Similarity=0.687 Sum_probs=42.7
Q ss_pred CCCcccCHHHHHhhcCCCCeEEEEcCeEeecCcccccCCCCccccc
Q 031756 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGMAISL 152 (153)
Q Consensus 107 ~~~~~it~eEv~kHn~~~d~WivI~GkVYDVT~Fl~~HPGG~~iLl 152 (153)
...+.||++||++|++.++|||+|+|+|||||+|+.+||||.++|+
T Consensus 6 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~ 51 (511)
T 1kbi_A 6 MNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIK 51 (511)
T ss_dssp SCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHH
T ss_pred CCCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHH
Confidence 3467899999999999999999999999999999999999998775
No 11
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.30 E-value=1.4e-12 Score=95.48 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=37.1
Q ss_pred cccCHHHHHhhcCCC---CeEEEEcCeEeecCcccc-cCCCCccc
Q 031756 110 RLITMDEVKQHQSEG---SMWTVLKGRVYNLSPYMK-FHPGGMAI 150 (153)
Q Consensus 110 ~~it~eEv~kHn~~~---d~WivI~GkVYDVT~Fl~-~HPGG~~i 150 (153)
+.||++||++|+..+ +|||+|+|+|||||+|.. +||||...
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~~ 47 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYS 47 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTTT
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCccc
Confidence 579999999999876 799999999999999987 79999843
No 12
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta}
Probab=49.89 E-value=5.1 Score=35.24 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.4
Q ss_pred CccccccCCCCcChhhHHHhh-cCCCCccC
Q 031756 74 ASRAKVPFEKGYSQVDWLRLT-QTHPDLAG 102 (153)
Q Consensus 74 ~~r~KvpL~pG~S~ldW~rL~-~s~~~L~g 102 (153)
..||+||++|| ..++||... +.+.+|..
T Consensus 383 ~~~f~hp~~~~-~~~gwm~~~~~~~~~~~~ 411 (424)
T 2bii_A 383 SLRFEHPVVAN-KPGGWMDRVKAEGGDILD 411 (424)
T ss_dssp EEEEECSCBTT-BCCSHHHHHHHTTCCTTS
T ss_pred EEEEeCCCCCC-CCCcCcchhhhccccccC
Confidence 78999999999 999999954 56677764
No 13
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Probab=42.61 E-value=6.7 Score=35.04 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.3
Q ss_pred CccccccCCCCcChhhHHHhh-cCCCCccC
Q 031756 74 ASRAKVPFEKGYSQVDWLRLT-QTHPDLAG 102 (153)
Q Consensus 74 ~~r~KvpL~pG~S~ldW~rL~-~s~~~L~g 102 (153)
..||+||++|| ..++||... +.+.+|..
T Consensus 433 ~~~f~hp~~~~-~~ggwm~~~~~~~~~~~~ 461 (474)
T 2bih_A 433 SLRFEHPVVAN-KPGGWMDRVKAEGGDILD 461 (474)
T ss_dssp EEEEECSCCSS-SCCSHHHHHHHHTCCTTS
T ss_pred EEEEeCCCCCC-CCCcCcchhhhccccccc
Confidence 78999999999 999999954 45667653
Done!