BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031757
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CA19|RT13_ARATH Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis
thaliana GN=RPS13 PE=2 SV=1
Length = 154
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 91/153 (59%), Positives = 120/153 (78%)
Query: 1 MISLRNSVGMLSNVSRQLIQTISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRA 60
M+ LR S L ++S+ L++ ++FHGLRVQG+RVGN E+PN+K L+T LQ VYGIGR ++
Sbjct: 1 MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKS 60
Query: 61 HQILCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRH 120
HQ+LC L I NKL ++LTG EL LREEV ++ G++LRR + ++++RLV++ CYRG RH
Sbjct: 61 HQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRH 120
Query: 121 SQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 153
GLPCRGQRTSTNART+KGK VAI GKKK R
Sbjct: 121 RHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153
>sp|Q8LPW2|RT13_SOYBN Small ribosomal subunit protein S13, mitochondrial OS=Glycine max
GN=RSP13 PE=3 SV=1
Length = 148
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 103/139 (74%), Gaps = 3/139 (2%)
Query: 7 SVGMLSNVSRQLIQTISFHGLRVQGLRVGNT---EIPNDKRLETSLQHVYGIGRSRAHQI 63
S +LS+V+ +L Q +S HG+RVQ + +G EIP++KRL +LQ+++GIGRS+A I
Sbjct: 4 SARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHI 63
Query: 64 LCDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQG 123
+ +L + NK K+L+ EL S+RE +S+YL G DL++C++ DV RLV IQCYRGIRH
Sbjct: 64 VAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDS 123
Query: 124 LPCRGQRTSTNARTRKGKR 142
LPCRGQRT TNARTR+ ++
Sbjct: 124 LPCRGQRTHTNARTRRSRK 142
>sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana
GN=RPS13 PE=2 SV=1
Length = 169
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 82/113 (72%)
Query: 25 HGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNS 84
L ++ RVG EIP +KR+E SLQ+++GIGR+RA QIL DL + NK+TK++ EL
Sbjct: 41 QSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELII 100
Query: 85 LREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNART 137
LR+EVS+Y+ DLRR ++RL +IQCYRG+RH QGLPCRGQRT N RT
Sbjct: 101 LRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRT 153
>sp|A5FZU3|RS13_ACICJ 30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsM PE=3 SV=1
Length = 125
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IP++KR+ SL+++YGIG ++A +I L IG +K +L+ E+ +RE + R
Sbjct: 3 RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDR 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLRR + +++RLVD+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK
Sbjct: 63 DYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
Query: 151 PTR 153
TR
Sbjct: 123 ATR 125
>sp|A1KB04|RS13_AZOSB 30S ribosomal protein S13 OS=Azoarcus sp. (strain BH72) GN=rpsM
PE=3 SV=1
Length = 120
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 81/119 (68%), Gaps = 3/119 (2%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVS 90
R+ IPN K E +L +YGIGRSRA +I CD + + K+LT ++ LR+EV
Sbjct: 3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKI-CDAAGVVRSAKIKDLTESDMEKLRDEVG 61
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
R++ DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK
Sbjct: 62 RFVVEGDLRREVTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120
>sp|B3PMM3|RS13_MYCA5 30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rpsM PE=3 SV=1
Length = 122
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
RV N EIPN KR SL +++GIG++ A QIL D N+ NK + L+ EL +REE +
Sbjct: 3 RVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y+T DLRR I +++RL++I+ YRGIRH +GLP RGQ T NARTRKG R I GKK
Sbjct: 63 YVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
>sp|B3E854|RS13_GEOLS 30S ribosomal protein S13 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rpsM PE=3 SV=1
Length = 122
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR 91
R+ ++P +KR+E +L ++YGIGR+ A IL +I G+ T +LT E+ LREE+ +
Sbjct: 3 RIAGIDLPKNKRIEIALTYIYGIGRTTAKNILVATSIDGSTRTDKLTEAEIGKLREEIDK 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
+ E DLRR + +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG + GKKK
Sbjct: 63 NVKVEGDLRREVSMNIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
>sp|Q6KI31|RS13_MYCMO 30S ribosomal protein S13 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rpsM PE=3 SV=1
Length = 122
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ N EIPN+KR+ SL +VYGIGRS + QIL + NI + K+L+ +L +R SR
Sbjct: 3 RILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASR 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
+ T DLRR I+ +++RL++I+ YRGIRH +GLP RGQ T NARTRKG R + GKK
Sbjct: 63 FTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120
>sp|Q47J80|RS13_DECAR 30S ribosomal protein S13 OS=Dechloromonas aromatica (strain RCB)
GN=rpsM PE=3 SV=1
Length = 120
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN + E +L ++GIGR+RA +I +G N K+L+ +++ LR+EV +
Sbjct: 3 RIAGVNIPNHQHAEIALTAIFGIGRTRAQKICDAAGVGRNVKMKDLSDSDMDRLRDEVGK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
+ DLRR + +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 FTVEGDLRREVTMNIKRLMDLGCYRGLRHRKGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|A9B434|RS13_HERA2 30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC
23779 / DSM 785) GN=rpsM PE=3 SV=1
Length = 127
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 88/124 (70%), Gaps = 3/124 (2%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ +IP +KR+E SL ++YGIGR+ + +IL NI N K+LT E+ LRE + +
Sbjct: 3 RISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQ 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR-VAIPGKK 149
T E DLRR ++ +++RL+DI CYRGIRH +GLP RGQRT TNARTR+GK+ AI GKK
Sbjct: 63 DYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKK 122
Query: 150 KPTR 153
K T+
Sbjct: 123 KATK 126
>sp|Q5P310|RS13_AROAE 30S ribosomal protein S13 OS=Aromatoleum aromaticum (strain EbN1)
GN=rpsM PE=3 SV=1
Length = 120
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ IPN K E +L +YGIGRSRA +I N+ + K+LT ++ LR+EV++
Sbjct: 3 RIAGVNIPNHKHAEIALTAIYGIGRSRAQKICDAANVVRSVKMKDLTESDMERLRDEVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
++ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI GKK
Sbjct: 63 FIVEGDLRRETTMNIKRLMDLGCYRGVRHRRGLPLRGQRTRTNARTRKGPRKAIAGKK 120
>sp|A5IYW1|RS13_MYCAP 30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2)
GN=rpsM PE=3 SV=1
Length = 123
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ N EIPN+KR+ SL ++YGIGR+ A +I I + K+L+ +L+++RE
Sbjct: 3 RILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKE 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y+T DLRR + +++RL++++CYRGIRH +GLP RGQ T +NARTRKG R + GKK
Sbjct: 63 YVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120
>sp|Q7NQH4|RS13_CHRVO 30S ribosomal protein S13 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsM PE=3 SV=1
Length = 120
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN LQ ++G+G++RA QI ++ + K+LT E+ +LR++V++
Sbjct: 3 RIAGVNIPNHAHAVIGLQAIFGVGQTRAQQICAAASVNPSTKVKDLTEAEMEALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
+ DLRR I ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 FTVEGDLRREITMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|Q4A5I8|RS13_MYCS5 30S ribosomal protein S13 OS=Mycoplasma synoviae (strain 53)
GN=rpsM PE=3 SV=1
Length = 122
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ N EIPN+KR+ SL ++YGIG+S A +I N+ N T ELT +L+ LRE
Sbjct: 3 RILNIEIPNNKRVVISLTYIYGIGKSLASEICKKANVDENTKTAELTEAQLSKLREVAKA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y T DLRR + +++R ++I+CYRGIRH +GLP RGQ T NARTRKG R + GKK
Sbjct: 63 YTTEGDLRREVTLNIKRYMEIKCYRGIRHRKGLPVRGQSTQKNARTRKGPRKTVAGKK 120
>sp|P82163|RR13_SPIOL 30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea
GN=RPS13 PE=1 SV=2
Length = 145
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 81/119 (68%), Gaps = 10/119 (8%)
Query: 22 ISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVE 81
I GL+++ +R+G EIPN KR+E SLQ+++GIGRSR+ QIL DLN NK+TK+L+ E
Sbjct: 37 IGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEE 96
Query: 82 LNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKG 140
+ LR+E +R + +ERL +I+CYRGIRH GLP RGQRT N RT KG
Sbjct: 97 VIILRKE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145
>sp|A1KRJ6|RS13_NEIMF 30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpsM PE=3
SV=1
Length = 120
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN+ + LQ +YGIG +RA I NI + K+L +L++LR++V++
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y DLRR + ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 YEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|P66386|RS13_NEIMB 30S ribosomal protein S13 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsM PE=3 SV=1
Length = 120
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN+ + LQ +YGIG +RA I NI + K+L +L++LR++V++
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y DLRR + ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 YEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|P66385|RS13_NEIMA 30S ribosomal protein S13 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpsM PE=3 SV=1
Length = 120
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN+ + LQ +YGIG +RA I NI + K+L +L++LR++V++
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y DLRR + ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 YEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|A9M3U3|RS13_NEIM0 30S ribosomal protein S13 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rpsM PE=3 SV=1
Length = 120
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN+ + LQ +YGIG +RA I NI + K+L +L++LR++V++
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y DLRR + ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 YEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|Q5F5U9|RS13_NEIG1 30S ribosomal protein S13 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpsM PE=3 SV=1
Length = 120
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ IPN+ + LQ +YGIG +RA I NI + K+L +L++LR++V++
Sbjct: 3 RIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTKAKDLDETQLDALRDQVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
Y DLRR + ++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R AI GKK
Sbjct: 63 YEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|C1DAU0|RS13_LARHH 30S ribosomal protein S13 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpsM PE=3 SV=1
Length = 120
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCD---LNIGNKLTKELTGVELNSLREEV 89
R+ IPN + + LQ +YGIG +RA +++C + I K+ K+LT E+ LR+E+
Sbjct: 3 RIAGVNIPNHQHIWVGLQAIYGIGATRA-KVICSAAGIEISTKV-KDLTDAEMEKLRDEI 60
Query: 90 SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149
+++ DLRR + +++RL+D+ CYRG RH +GLPCRGQRT TNARTRKG R I GKK
Sbjct: 61 AKFTIEGDLRREVTMNIKRLMDLGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKPIAGKK 120
>sp|B0K5R8|RS13_THEPX 30S ribosomal protein S13 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsM PE=3 SV=1
Length = 122
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ ++P DKR+E +L ++YGIGRSR+++IL + + K+LT E++ LRE + +
Sbjct: 3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDK 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLR+ + +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R + KKK
Sbjct: 63 EYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
>sp|B0KCM5|RS13_THEP3 30S ribosomal protein S13 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsM PE=3 SV=1
Length = 122
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ ++P DKR+E +L ++YGIGRSR+++IL + + K+LT E++ LRE + +
Sbjct: 3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDK 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLR+ + +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R + KKK
Sbjct: 63 EYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
>sp|B1W3Y2|RS13_STRGG 30S ribosomal protein S13 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpsM PE=3 SV=1
Length = 126
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
RV +IP +KR+E +L +V+GIGR+R+ +IL + N ++L +L +RE V
Sbjct: 3 RVSGVDIPREKRVEVALTYVFGIGRTRSKEILASTGVNPNTRVRDLAEEDLVKIREHVDA 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
L E DLRR ++ ++ R V+I CY+GIRH +GLP GQRTSTNARTRKG R AI GKKK
Sbjct: 63 NLRTEGDLRREVQANIRRKVEIGCYQGIRHRRGLPVHGQRTSTNARTRKGPRRAIAGKKK 122
Query: 151 P 151
P
Sbjct: 123 P 123
>sp|Q0BUM8|RS13_GRABC 30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2
Length = 125
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR 91
R+ IP +KR+ SL+++YGIG ++A +I +L+I + + +L+ E+ +RE + R
Sbjct: 3 RIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDR 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK
Sbjct: 63 EYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
Query: 151 PTR 153
TR
Sbjct: 123 VTR 125
>sp|Q2LQD2|RS13_SYNAS 30S ribosomal protein S13 OS=Syntrophus aciditrophicus (strain SB)
GN=rpsM PE=3 SV=1
Length = 122
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ ++P +KR+E +L ++YGIGR++A +IL I + T EL E+N++R + R
Sbjct: 3 RIAGVDLPKNKRMEIALTYIYGIGRTKAKEILEKAEISFDTKTDELADSEINAIRTIIDR 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
E DLRR I ++RL+D+ YRG+RH +GLP RGQRT TNARTRKG R AI GKKK
Sbjct: 63 DHKVEGDLRRDISMSIKRLMDVGAYRGLRHRKGLPVRGQRTHTNARTRKGPRRAIAGKKK 122
>sp|Q0AUK6|RS13_SYNWW 30S ribosomal protein S13 OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=rpsM PE=3 SV=1
Length = 122
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ ++P DKR+E SL +++GIGRS + +IL D I + K+LT E++ LRE + +
Sbjct: 3 RIAGVDLPRDKRIEVSLTYIFGIGRSSSRKILTDAGINPDTRVKDLTEEEVSKLREIIEK 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLRR + D++RL+D+ CYRGIRH +GLP RGQ T TNARTRKG + GKKK
Sbjct: 63 EYHVEGDLRRQVNMDIKRLMDLGCYRGIRHRRGLPVRGQNTKTNARTRKGPKRTAGGKKK 122
>sp|Q8R7X9|RS13_THETN 30S ribosomal protein S13 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsM PE=3 SV=1
Length = 122
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR 91
R+ ++P DKR+E +L ++YGIGRSR+ +IL + + ++LT E++ LRE + +
Sbjct: 3 RIAGVDLPRDKRVEIALTYIYGIGRSRSKEILAKAGVNPDTRVRDLTEDEVSKLREIIEK 62
Query: 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLR+ + +++RL+DI CYRGIRH GLP RGQRT TNARTRKG R + KKK
Sbjct: 63 EYKVEGDLRKEVAMNIKRLIDIGCYRGIRHKLGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
>sp|Q2YAX5|RS13_NITMU 30S ribosomal protein S13 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpsM PE=3 SV=1
Length = 125
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 80/115 (69%), Gaps = 3/115 (2%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQI--LCDLNIGNKLTKELTGVELNSLREEVS 90
R+ IPN + E +L +YGIGR+RA +I +N+ K+ K++T E++ LR+ V+
Sbjct: 3 RIAGVNIPNHQHAEIALTAIYGIGRARAREICEAAGINVSTKM-KDVTDAEMDKLRDNVA 61
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 145
+++ DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A+
Sbjct: 62 KFVVEGDLRREVSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAV 116
>sp|A9H3J7|RS13_GLUDA 30S ribosomal protein S13 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsM PE=3 SV=1
Length = 125
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEV-S 90
R+ IP +KR+ L+++YGIG ++A +I L I + EL+ E+ +RE + S
Sbjct: 3 RIAGVNIPTNKRVTIGLRYIYGIGETKAEEICRRLEIPAERRVNELSDDEILKIRELIDS 62
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK
Sbjct: 63 EYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
Query: 151 PTR 153
TR
Sbjct: 123 ATR 125
>sp|B5EM96|RS13_ACIF5 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpsM PE=3 SV=1
Length = 118
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ IPN+K++E +L ++YGIGR+RA +L +I + K+++ EL +R EV++
Sbjct: 3 RIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRVKDISEPELERIRSEVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKG 140
+L DLRR + +++RL+D+ CYRGIRH +GLP GQRT TNARTRKG
Sbjct: 63 FLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKG 111
>sp|B7J4A1|RS13_ACIF2 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1
Length = 118
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ IPN+K++E +L ++YGIGR+RA +L +I + K+++ EL +R EV++
Sbjct: 3 RIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRVKDISEPELERIRSEVAK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKG 140
+L DLRR + +++RL+D+ CYRGIRH +GLP GQRT TNARTRKG
Sbjct: 63 FLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKG 111
>sp|B5XJ60|RS13_STRPZ 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|P0DE69|RS13_STRPQ 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q48VS5|RS13_STRPM 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|A2RC38|RS13_STRPG 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q1J8Y9|RS13_STRPF 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q1JJ37|RS13_STRPD 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q1JNZ3|RS13_STRPC 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q1JE35|RS13_STRPB 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|P66396|RS13_STRP8 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|Q5XEB1|RS13_STRP6 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|P0DE68|RS13_STRP3 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|P66394|RS13_STRP1 30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M1
GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV
Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDA 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK
Sbjct: 63 IKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
>sp|A0LIL4|RS13_SYNFM 30S ribosomal protein S13 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rpsM PE=3 SV=1
Length = 124
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEV-S 90
R+ ++P +KR+E +L ++YGIGR A +IL NI GN + +LT ++NS+R + S
Sbjct: 3 RIAGIDLPKNKRIEIALTYIYGIGRPTAQKILEQANIDGNTKSDDLTENQINSIRHVIDS 62
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R ++ GK+K
Sbjct: 63 HYKVEGDLRTEVSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPRRSVMGKRK 122
>sp|P59756|RS13_STRAW 30S ribosomal protein S13 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rpsM PE=3 SV=1
Length = 126
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-S 90
RV +IP +KR+E +L +V+GIGR+ + + L + + N ++L+ EL +RE V +
Sbjct: 3 RVSGVDIPREKRVEVALTYVFGIGRTLSQKTLAETGVNPNTRVRDLSEEELVRIREYVDN 62
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
+ T DLRR ++ D+ R V+I CY+G+RH +GLP GQRTSTNARTRKG R AI GKKK
Sbjct: 63 NFKTEGDLRREVQADIRRKVEIGCYQGLRHRRGLPVHGQRTSTNARTRKGPRRAIAGKKK 122
Query: 151 P 151
P
Sbjct: 123 P 123
>sp|Q6YQZ7|RS13_ONYPE 30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain
OY-M) GN=rpsM PE=3 SV=1
Length = 121
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ +IP+DKR+ +L ++YG+G +H+IL +LNI + K LT +L++LR E+++
Sbjct: 3 RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITK 62
Query: 92 YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
Y DLRR + +++RL++I YRG+RH +GLP RGQ+T NA T KGK AI GKKK
Sbjct: 63 YNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121
>sp|Q73S46|RS13_MYCPA 30S ribosomal protein S13 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=rpsM PE=3 SV=1
Length = 124
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ ++P DKR+E +L ++YG+GR+R+++IL I L T++LT +L LR+ +
Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRDLRTRDLTDDQLTHLRDYIEA 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK
Sbjct: 63 NLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
>sp|A0QKU8|RS13_MYCA1 30S ribosomal protein S13 OS=Mycobacterium avium (strain 104)
GN=rpsM PE=3 SV=2
Length = 124
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSR 91
R+ ++P DKR+E +L ++YG+GR+R+++IL I L T++LT +L LR+ +
Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRDLRTRDLTDDQLTHLRDYIEA 62
Query: 92 YLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK
Sbjct: 63 NLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
>sp|A4G9R6|RS13_HERAR 30S ribosomal protein S13 OS=Herminiimonas arsenicoxydans GN=rpsM
PE=3 SV=1
Length = 121
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 33 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVS 90
R+ +PN + L +YGIGR RA +I CD + K K+L EL LR+E++
Sbjct: 3 RIAGVNVPNHQHTVIGLTAIYGIGRPRAQKI-CDATGVLTTKKVKDLDDSELEKLRDEIA 61
Query: 91 RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150
+++ DLRR I +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R A KK
Sbjct: 62 KFIVEGDLRREISMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLKK 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,225,498
Number of Sequences: 539616
Number of extensions: 2032006
Number of successful extensions: 6458
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4798
Number of HSP's gapped (non-prelim): 870
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)