Query 031757
Match_columns 153
No_of_seqs 109 out of 935
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_M RPS18E; ribosome, trans 100.0 4.2E-52 1.4E-56 324.3 8.1 131 14-150 1-155 (155)
2 3iz6_M 40S ribosomal protein S 100.0 3.8E-51 1.3E-55 318.0 5.5 128 14-149 1-152 (152)
3 2vqe_M 30S ribosomal protein S 100.0 4E-51 1.4E-55 309.5 4.2 123 31-153 1-125 (126)
4 3j20_O 30S ribosomal protein S 100.0 1.8E-50 6E-55 313.1 7.2 123 22-150 2-148 (148)
5 3u5c_S 40S ribosomal protein S 100.0 3.4E-49 1.2E-53 305.3 8.1 120 14-137 1-144 (146)
6 3r8n_M 30S ribosomal protein S 100.0 1.1E-48 3.7E-53 291.7 5.4 111 32-142 1-112 (114)
7 3bbn_M Ribosomal protein S13; 100.0 2E-46 7E-51 289.0 -4.1 122 9-140 22-145 (145)
8 2a1j_A DNA repair endonuclease 91.1 0.13 4.3E-06 33.4 2.4 38 47-85 4-41 (63)
9 3u6p_A Formamidopyrimidine-DNA 90.8 0.22 7.5E-06 40.9 4.1 51 41-91 154-208 (273)
10 3twl_A Formamidopyrimidine-DNA 90.5 0.25 8.5E-06 41.4 4.3 49 42-90 168-220 (310)
11 1ee8_A MUTM (FPG) protein; bet 89.9 0.38 1.3E-05 39.3 4.9 50 41-90 142-195 (266)
12 2xzf_A Formamidopyrimidine-DNA 89.8 0.39 1.3E-05 39.2 4.9 50 42-91 153-206 (271)
13 1k82_A Formamidopyrimidine-DNA 89.8 0.38 1.3E-05 39.3 4.7 49 42-90 150-202 (268)
14 1k3x_A Endonuclease VIII; hydr 89.7 0.38 1.3E-05 39.1 4.7 49 43-91 151-203 (262)
15 1kft_A UVRC, excinuclease ABC 89.3 0.1 3.5E-06 34.5 0.8 34 35-68 12-45 (78)
16 3w0f_A Endonuclease 8-like 3; 89.0 0.45 1.5E-05 39.7 4.7 51 42-92 174-228 (287)
17 3vk8_A Probable formamidopyrim 88.5 0.51 1.7E-05 39.2 4.7 50 41-90 153-207 (295)
18 3arc_U Photosystem II 12 kDa e 87.7 0.51 1.8E-05 33.4 3.7 57 40-96 19-79 (97)
19 1s5l_U Photosystem II 12 kDa e 86.7 0.8 2.7E-05 34.4 4.4 57 39-95 55-115 (134)
20 2a1j_B DNA excision repair pro 85.5 0.16 5.6E-06 34.6 0.0 26 43-68 28-53 (91)
21 1mu5_A Type II DNA topoisomera 83.5 1.5 5E-05 38.5 5.3 44 50-93 261-305 (471)
22 1ixr_A Holliday junction DNA h 82.7 0.21 7E-06 39.2 -0.5 47 24-70 49-95 (191)
23 1cuk_A RUVA protein; DNA repai 80.6 0.29 9.9E-06 38.7 -0.3 47 24-70 50-96 (203)
24 1x2i_A HEF helicase/nuclease; 80.6 0.28 9.5E-06 31.4 -0.3 27 42-68 9-35 (75)
25 1z00_A DNA excision repair pro 80.1 0.88 3E-05 30.6 2.1 25 44-68 16-40 (89)
26 2duy_A Competence protein come 79.5 0.81 2.8E-05 29.8 1.7 45 44-88 24-72 (75)
27 3fut_A Dimethyladenosine trans 73.6 2.5 8.7E-05 34.2 3.4 50 40-90 218-268 (271)
28 1z00_B DNA repair endonuclease 72.4 2 6.7E-05 29.4 2.1 43 42-85 13-55 (84)
29 2nrt_A Uvrabc system protein C 67.8 2.8 9.4E-05 33.7 2.4 38 47-85 168-205 (220)
30 3fhg_A Mjogg, N-glycosylase/DN 67.0 3 0.0001 32.4 2.4 26 44-69 114-139 (207)
31 2ztd_A Holliday junction ATP-d 65.3 1.3 4.3E-05 35.3 -0.1 39 32-70 73-111 (212)
32 1qyr_A KSGA, high level kasuga 62.7 5.1 0.00017 31.8 3.1 44 41-90 205-249 (252)
33 2gqf_A Hypothetical protein HI 60.9 6.1 0.00021 33.0 3.4 48 42-91 280-327 (401)
34 2ihm_A POL MU, DNA polymerase 59.6 8.8 0.0003 32.4 4.1 40 46-86 101-145 (360)
35 2eo2_A Adult MALE hypothalamus 58.9 8.2 0.00028 26.0 3.0 24 64-87 37-60 (71)
36 3fhf_A Mjogg, N-glycosylase/DN 56.8 5.6 0.00019 31.4 2.3 27 44-70 121-148 (214)
37 1pu6_A 3-methyladenine DNA gly 56.5 5.2 0.00018 31.3 2.0 24 44-67 118-141 (218)
38 2edu_A Kinesin-like protein KI 55.7 14 0.00048 25.1 4.0 43 45-87 38-88 (98)
39 2ztd_A Holliday junction ATP-d 54.0 5.1 0.00017 31.8 1.6 22 47-68 123-144 (212)
40 3n0u_A Probable N-glycosylase/ 52.9 5.5 0.00019 31.5 1.6 26 44-69 126-152 (219)
41 1tdh_A NEI endonuclease VIII-l 51.1 2.2 7.5E-05 36.6 -1.0 39 42-80 158-200 (364)
42 2abk_A Endonuclease III; DNA-r 50.8 6.5 0.00022 30.4 1.7 23 45-67 107-129 (211)
43 1kea_A Possible G-T mismatches 50.7 7.6 0.00026 30.3 2.2 23 45-67 113-135 (221)
44 1vq8_Y 50S ribosomal protein L 50.4 3.3 0.00011 33.4 0.0 22 48-69 49-70 (241)
45 1kg2_A A/G-specific adenine gl 49.7 7.2 0.00025 30.4 1.9 23 45-67 107-129 (225)
46 1orn_A Endonuclease III; DNA r 49.1 7.8 0.00027 30.4 2.0 25 45-69 111-136 (226)
47 2h56_A DNA-3-methyladenine gly 49.1 7.9 0.00027 30.5 2.0 26 44-69 135-161 (233)
48 4b21_A Probable DNA-3-methylad 47.6 8.2 0.00028 30.6 1.9 24 44-67 147-170 (232)
49 1mpg_A ALKA, 3-methyladenine D 47.1 7.8 0.00027 31.3 1.7 24 44-67 204-227 (282)
50 1ixr_A Holliday junction DNA h 46.2 8.4 0.00029 29.9 1.7 22 47-68 107-128 (191)
51 3ftd_A Dimethyladenosine trans 46.2 12 0.00042 29.3 2.8 41 41-91 205-246 (249)
52 3b0x_A DNA polymerase beta fam 46.1 8.1 0.00028 34.3 1.8 28 43-70 89-116 (575)
53 3s6i_A DNA-3-methyladenine gly 45.9 9.9 0.00034 29.9 2.1 22 45-66 137-158 (228)
54 4e9f_A Methyl-CPG-binding doma 45.9 10 0.00035 28.6 2.1 21 47-67 104-124 (161)
55 2bgw_A XPF endonuclease; hydro 45.9 9.5 0.00032 29.3 2.0 25 45-69 160-184 (219)
56 2jhn_A ALKA, 3-methyladenine D 45.6 8.6 0.00029 31.3 1.8 25 44-68 207-232 (295)
57 3c65_A Uvrabc system protein C 45.5 4.4 0.00015 32.6 0.0 42 43-85 169-210 (226)
58 1cuk_A RUVA protein; DNA repai 45.4 8.4 0.00029 30.1 1.6 21 47-67 108-128 (203)
59 2fmp_A DNA polymerase beta; nu 45.1 9.6 0.00033 31.8 2.0 41 45-86 96-141 (335)
60 3i0w_A 8-oxoguanine-DNA-glycos 44.5 9 0.00031 31.3 1.7 44 43-89 207-251 (290)
61 2yg9_A DNA-3-methyladenine gly 44.5 10 0.00035 29.7 2.0 25 43-67 142-166 (225)
62 3v76_A Flavoprotein; structura 43.5 21 0.00072 30.0 4.0 50 41-92 298-347 (417)
63 3uzu_A Ribosomal RNA small sub 42.8 4.8 0.00016 32.5 -0.2 44 41-90 229-273 (279)
64 2bcq_A DNA polymerase lambda; 41.4 7.8 0.00027 32.4 0.9 42 40-82 89-134 (335)
65 2zbk_B Type 2 DNA topoisomeras 40.4 40 0.0014 29.9 5.4 43 50-92 260-303 (530)
66 2xhi_A N-glycosylase/DNA lyase 39.5 12 0.0004 31.7 1.7 24 44-67 250-273 (360)
67 2zet_C Melanophilin; complex, 39.2 50 0.0017 24.7 5.1 18 74-91 14-31 (153)
68 1jms_A Terminal deoxynucleotid 39.0 13 0.00044 31.7 1.9 40 46-86 120-165 (381)
69 3fsp_A A/G-specific adenine gl 38.8 12 0.00041 31.2 1.6 23 45-67 116-138 (369)
70 3bqs_A Uncharacterized protein 37.9 95 0.0033 21.2 7.9 22 48-70 5-26 (93)
71 2i5h_A Hypothetical protein AF 36.3 18 0.00061 28.9 2.2 19 47-65 132-150 (205)
72 3vdp_A Recombination protein R 35.8 27 0.00091 27.9 3.2 67 44-123 23-122 (212)
73 2w9m_A Polymerase X; SAXS, DNA 35.0 16 0.00053 32.6 1.9 27 43-70 93-119 (578)
74 3tqs_A Ribosomal RNA small sub 34.3 9.7 0.00033 30.2 0.4 43 41-89 211-254 (255)
75 4ecq_A DNA polymerase ETA; tra 32.7 33 0.0011 29.3 3.5 37 48-84 254-291 (435)
76 2w9m_A Polymerase X; SAXS, DNA 31.9 16 0.00053 32.6 1.3 44 48-91 132-175 (578)
77 1qa6_A Ribosomal protein L11; 31.1 81 0.0028 20.4 4.5 48 58-105 4-58 (67)
78 4gfj_A Topoisomerase V; helix- 30.0 23 0.00078 32.0 2.0 41 46-86 467-516 (685)
79 3n5n_X A/G-specific adenine DN 29.9 19 0.00066 29.6 1.5 22 46-67 127-149 (287)
80 1vdd_A Recombination protein R 29.1 40 0.0014 27.2 3.2 68 43-123 8-108 (228)
81 2kp7_A Crossover junction endo 28.8 27 0.00093 23.7 1.9 20 48-67 59-78 (87)
82 3gru_A Dimethyladenosine trans 28.0 20 0.00069 29.1 1.3 52 40-91 225-287 (295)
83 2owo_A DNA ligase; protein-DNA 27.3 49 0.0017 30.4 3.8 37 49-85 448-485 (671)
84 3b0x_A DNA polymerase beta fam 26.6 21 0.0007 31.7 1.1 42 49-90 130-171 (575)
85 1exn_A 5'-exonuclease, 5'-nucl 25.6 35 0.0012 28.0 2.3 18 51-68 207-224 (290)
86 3q8k_A Flap endonuclease 1; he 25.0 34 0.0012 28.5 2.2 18 51-68 236-253 (341)
87 2hnh_A DNA polymerase III alph 25.0 77 0.0026 30.1 4.8 45 43-87 829-884 (910)
88 1zq9_A Probable dimethyladenos 24.5 87 0.003 24.6 4.4 32 60-91 248-279 (285)
89 2d0s_A Cytochrome C, cytochrom 24.1 50 0.0017 20.2 2.4 17 75-91 61-77 (79)
90 3f2b_A DNA-directed DNA polyme 23.9 46 0.0016 32.3 3.1 38 29-66 940-986 (1041)
91 1gks_A Cytochrome C551; haloph 23.8 54 0.0019 20.3 2.6 20 72-91 57-76 (78)
92 1kx2_A Mono-heme C-type cytoch 23.6 52 0.0018 20.6 2.5 17 75-91 63-79 (81)
93 1zbd_B Rabphilin-3A; G protein 22.6 90 0.0031 22.7 3.8 19 73-91 6-24 (134)
94 1ci4_A Protein (barrier-TO-aut 22.6 61 0.0021 22.5 2.7 24 47-71 18-41 (89)
95 2zxy_A Cytochrome C552, cytoch 22.5 49 0.0017 20.3 2.1 17 75-91 69-85 (87)
96 3ph2_B Cytochrome C6; photosyn 22.3 56 0.0019 20.0 2.4 18 74-91 63-80 (86)
97 1jx4_A DNA polymerase IV (fami 21.7 84 0.0029 25.6 3.9 36 49-85 180-216 (352)
98 1rxw_A Flap structure-specific 21.5 46 0.0016 27.3 2.3 18 51-68 239-256 (336)
99 1ayg_A Cytochrome C-552; elect 21.5 58 0.002 20.1 2.3 16 76-91 63-78 (80)
100 1c75_A Cytochrome C-553; heme, 21.5 63 0.0022 19.4 2.5 17 75-91 53-69 (71)
101 1cc5_A Cytochrome C5; electron 21.3 60 0.0021 20.7 2.4 15 76-90 67-81 (83)
102 1c53_A Cytochrome C553; electr 21.0 52 0.0018 20.3 2.0 17 75-91 62-78 (79)
103 1im4_A DBH; DNA polymerase PAL 20.9 66 0.0023 24.8 3.0 22 49-71 186-207 (221)
104 3dr0_A Cytochrome C6; photosyn 20.8 57 0.0019 20.2 2.2 18 74-91 69-86 (93)
105 1a56_A C-551, ferricytochrome 20.7 52 0.0018 20.3 2.0 17 75-91 63-79 (81)
106 1hc8_A Ribosomal protein L11; 20.4 1E+02 0.0035 20.4 3.4 49 58-106 9-64 (76)
107 1ls9_A Cytochrome C6; omega lo 20.4 64 0.0022 20.2 2.4 18 74-91 67-84 (91)
108 1c6r_A Cytochrome C6; electron 20.3 65 0.0022 20.0 2.4 18 74-91 65-82 (89)
109 3dmi_A Cytochrome C6; electron 20.2 77 0.0026 19.5 2.7 18 74-91 64-81 (88)
110 2exv_A Cytochrome C-551; alpha 20.2 66 0.0022 19.7 2.4 16 76-91 65-80 (82)
111 2i0x_A Hypothetical protein PF 20.2 53 0.0018 21.9 2.0 36 57-92 14-52 (85)
112 2bcq_A DNA polymerase lambda; 20.1 44 0.0015 27.8 1.9 31 48-78 58-89 (335)
No 1
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=4.2e-52 Score=324.25 Aligned_cols=131 Identities=31% Similarity=0.387 Sum_probs=122.7
Q ss_pred eeeeeccCCccccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 031757 14 VSRQLIQTISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR- 91 (153)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~- 91 (153)
||+..++.++|||+ +||+|||||++|+|.+|||+|||||+++|..||+++||| ++++++||++|+++|.++|++
T Consensus 1 m~~~~~~~~~f~~m----~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p 76 (155)
T 2xzm_M 1 MSFVIEKESDFKYI----HRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADP 76 (155)
T ss_dssp CCCCSSTTTSSCSC----CEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSH
T ss_pred CCccccchHhhhhh----HheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCc
Confidence 45555444589999 999999999999999999999999999999999999999 779999999999999999986
Q ss_pred ----------------------ccchHHHHHHHHHhHHHHHhhhhccCCccCCCCccCCccccccccCCCCccccccCCC
Q 031757 92 ----------------------YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149 (153)
Q Consensus 92 ----------------------~~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarTak~~~~gv~~kk 149 (153)
|.+|+||++++++||+||++|+||||+||.+||||||||||||||| +.++||++||
T Consensus 77 ~~~~iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRt--g~tvGv~kkk 154 (155)
T 2xzm_M 77 EAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRH--GVVCGVVRKN 154 (155)
T ss_dssp HHHCCCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCS--SCCCSSCCCC
T ss_pred cccCCCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCC--cccccccccC
Confidence 8999999999999999999999999999999999999999999999 7799999998
Q ss_pred C
Q 031757 150 K 150 (153)
Q Consensus 150 ~ 150 (153)
+
T Consensus 155 ~ 155 (155)
T 2xzm_M 155 K 155 (155)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.8e-51 Score=317.99 Aligned_cols=128 Identities=30% Similarity=0.484 Sum_probs=119.6
Q ss_pred eeeeeccCCccccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 031757 14 VSRQLIQTISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR- 91 (153)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~- 91 (153)
||+. .+++|||+ +||+|||||++|+|.+|||+|||||+++|..||+++||| ++++++||++|+++|.++|++
T Consensus 1 ~~~~--~~~~~~~m----~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~ 74 (152)
T 3iz6_M 1 MSLI--AGEEFQHI----LRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNP 74 (152)
T ss_dssp CCCC--TTCSCCCC----CCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSC
T ss_pred CCcc--cHHHHHHH----HHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhh
Confidence 4444 45689999 999999999999999999999999999999999999999 789999999999999999974
Q ss_pred --c--------------------cchHHHHHHHHHhHHHHHhhhhccCCccCCCCccCCccccccccCCCCccccccCCC
Q 031757 92 --Y--------------------LTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 149 (153)
Q Consensus 92 --~--------------------~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarTak~~~~gv~~kk 149 (153)
| ++++||++++++||+||++|+||||+||.+||||||||||||||| +.+|||++||
T Consensus 75 ~~~~ip~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRt--g~tvgv~kkk 152 (152)
T 3iz6_M 75 RQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRR--GKTVGVSKKR 152 (152)
T ss_dssp SSCCCCCCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHH--HHCSCCSSCC
T ss_pred cccCcchhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCC--ceecceecCC
Confidence 4 456999999999999999999999999999999999999999999 8999999986
No 3
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=4e-51 Score=309.46 Aligned_cols=123 Identities=46% Similarity=0.772 Sum_probs=117.3
Q ss_pred eeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-ccchHHHHHHHHHhHHH
Q 031757 31 GLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVER 108 (153)
Q Consensus 31 ~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~-~~i~~dL~~~~~~dI~r 108 (153)
|+||+|+|||++|.|++|||+|||||+++|..||+++||| +.++++||++|+++|.++|++ |.+|+||++++++||+|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkR 80 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKR 80 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999 779999999999999999996 99999999999999999
Q ss_pred HHhhhhccCCccCCCCccCCccccccccCCCCccccccCCCCCCC
Q 031757 109 LVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 153 (153)
Q Consensus 109 L~~I~sYRG~RH~~GLPVRGQRTrTNarTak~~~~gv~~kk~~~~ 153 (153)
|++|+||||+||.+|||||||||||||||+|+.+..|.+||++++
T Consensus 81 L~~I~~YRG~RH~~GLPVRGQRTkTNaRTrkg~~~~v~~kkk~~~ 125 (126)
T 2vqe_M 81 LMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR 125 (126)
T ss_dssp HHHTTCHHHHHHHTTCCSSSCCCSSCCHHHHCSCCCCCCCCSSCC
T ss_pred HHHHHHHhhhhhccCCcCCCccCccccccCCCcccccccccCCCC
Confidence 999999999999999999999999999999999988988777653
No 4
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-50 Score=313.09 Aligned_cols=123 Identities=33% Similarity=0.511 Sum_probs=117.9
Q ss_pred CccccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh---------
Q 031757 22 ISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR--------- 91 (153)
Q Consensus 22 ~~~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~--------- 91 (153)
++|||+ +||+|||||++|+|.+|||+|||||+++|..||+++||| ++++++||++|+++|.++|++
T Consensus 2 ~~~~~m----~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w 77 (148)
T 3j20_O 2 ANFRHI----VRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRW 77 (148)
T ss_dssp CCBCSC----EECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTT
T ss_pred hhhhHh----HHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChh
Confidence 469999 999999999999999999999999999999999999999 778999999999999999975
Q ss_pred --------------ccchHHHHHHHHHhHHHHHhhhhccCCccCCCCccCCccccccccCCCCccccccCCCC
Q 031757 92 --------------YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 150 (153)
Q Consensus 92 --------------~~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarTak~~~~gv~~kk~ 150 (153)
|.+|+||++++++||+||++|+||||+||.+||||||||||||||| +.+|||++||+
T Consensus 78 ~lNr~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~--g~tvgv~kkk~ 148 (148)
T 3j20_O 78 AVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRR--GQTVGVSRKKK 148 (148)
T ss_dssp TSSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCS--SCCCCCSSCCC
T ss_pred hhcccCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCc--CcccceeccCC
Confidence 3899999999999999999999999999999999999999999998 88999999875
No 5
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=3.4e-49 Score=305.27 Aligned_cols=120 Identities=30% Similarity=0.466 Sum_probs=114.0
Q ss_pred eeeeeccCCccccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 031757 14 VSRQLIQTISFHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR- 91 (153)
Q Consensus 14 ~~~~~~~~~~~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~- 91 (153)
||++.+++++|||| +||+|||||++|+|.+|||+|||||+++|..||+++||| ++++++||++|+++|.++|++
T Consensus 1 ~~~~~~~~~~~~~~----~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~ 76 (146)
T 3u5c_S 1 MSLVVQEQGSFQHI----LRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNP 76 (146)
T ss_dssp -CCCCCCCSCCCSS----BCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCT
T ss_pred CCccCCCHHHhhhh----hhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhh
Confidence 78888888799999 999999999999999999999999999999999999999 789999999999999999974
Q ss_pred --c--------------------cchHHHHHHHHHhHHHHHhhhhccCCccCCCCccCCccccccccC
Q 031757 92 --Y--------------------LTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNART 137 (153)
Q Consensus 92 --~--------------------~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT 137 (153)
| ++|+||++++++||+||++|+||||+||.+|||||||||||||||
T Consensus 77 ~~~~iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~ 144 (146)
T 3u5c_S 77 THYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRR 144 (146)
T ss_dssp TTTTCCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCS
T ss_pred cccCccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCC
Confidence 3 469999999999999999999999999999999999999999998
No 6
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=1.1e-48 Score=291.75 Aligned_cols=111 Identities=44% Similarity=0.820 Sum_probs=107.9
Q ss_pred eEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhccchHHHHHHHHHhHHHHH
Q 031757 32 LRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLV 110 (153)
Q Consensus 32 vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~~~i~~dL~~~~~~dI~rL~ 110 (153)
.||+|||||++|+|.+|||+|||||+++|..||+++||| ++++++||++|+++|.++|++|.+|+||++++++||+||+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~RL~ 80 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM 80 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 7799999999999999999999999999999999999999
Q ss_pred hhhhccCCccCCCCccCCccccccccCCCCcc
Q 031757 111 DIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 142 (153)
Q Consensus 111 ~I~sYRG~RH~~GLPVRGQRTrTNarTak~~~ 142 (153)
+|+||||+||.+|||||||||||||||+|+.+
T Consensus 81 ~I~~yRG~RH~~GLpVRGQrTkTnaRTrkg~~ 112 (114)
T 3r8n_M 81 DLGCYRGLRHRRGLPVRGQRTKTNARTRKGPR 112 (114)
T ss_dssp HHTCHHHHHHHTTSCCSSCCSSSCCHHHHCSC
T ss_pred HhceeeeecccCCCCCCCCCCCCcccccCCCC
Confidence 99999999999999999999999999988764
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2e-46 Score=289.02 Aligned_cols=122 Identities=52% Similarity=0.789 Sum_probs=95.1
Q ss_pred ccccceeeeeccCCccc--cceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHH
Q 031757 9 GMLSNVSRQLIQTISFH--GLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLR 86 (153)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~ 86 (153)
++-+++|++...+++|| .++..|+||+|||||++|.|.+|||+|||||+.+|.+||+++||+++++++||++|+++|.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~gI~~~rv~~Lte~ei~~l~ 101 (145)
T 3bbn_M 22 GRSSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILR 101 (145)
T ss_dssp -------------------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGGTTTTCCSCBTTSCCSSTTHHHH
T ss_pred CCCCccccccCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHHHHcCCCceEcCCCCHHHHHHHH
Confidence 45678999999999999 5666779999999999999999999999999999999999999988899999999999998
Q ss_pred HHHhhccchHHHHHHHHHhHHHHHhhhhccCCccCCCCccCCccccccccCCCC
Q 031757 87 EEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKG 140 (153)
Q Consensus 87 ~~l~~~~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarTak~ 140 (153)
++ ++++++||+||++|+||||+||.+|||||||||||||||+|+
T Consensus 102 ~~----------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrKg 145 (145)
T 3bbn_M 102 KE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145 (145)
T ss_dssp SS----------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSCC
T ss_pred HH----------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCCC
Confidence 76 666899999999999999999999999999999999999774
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.12 E-value=0.13 Score=33.37 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=30.5
Q ss_pred eecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 031757 47 TSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSL 85 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L 85 (153)
-.|..|+|||+..+..+++.+| +-..+.+.|.+|+..+
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fg-s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVK-NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCS-SHHHHHTCCHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcC-CHHHHHHCCHHHHHHH
Confidence 3578999999999999999887 3344567788888777
No 9
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=90.76 E-value=0.22 Score=40.91 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 031757 41 NDKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVSR 91 (153)
Q Consensus 41 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~~ 91 (153)
.+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++||++|++.|-+.+..
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 356677777 66889999999999999999965 6799999999999887643
No 10
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=90.52 E-value=0.25 Score=41.41 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=40.8
Q ss_pred Cceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 031757 42 DKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVS 90 (153)
Q Consensus 42 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~ 90 (153)
+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++|+++|++.|.+.+.
T Consensus 168 ~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~ 220 (310)
T 3twl_A 168 KITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIK 220 (310)
T ss_dssp CSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred cchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHH
Confidence 45565666 45789999999999999999955 679999999999987664
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.94 E-value=0.38 Score=39.30 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 031757 41 NDKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVS 90 (153)
Q Consensus 41 ~~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~ 90 (153)
.+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++|+++|++.|-+.+.
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 195 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALR 195 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 356677777 66889999999999999999965 679999999999988663
No 12
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=89.84 E-value=0.39 Score=39.23 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=42.4
Q ss_pred Cceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 031757 42 DKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVSR 91 (153)
Q Consensus 42 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~~ 91 (153)
+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++|+++|++.|-+.+..
T Consensus 153 ~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 153 TKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45677777 66889999999999999999965 6799999999999887643
No 13
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.77 E-value=0.38 Score=39.32 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=41.8
Q ss_pred Cceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 031757 42 DKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVS 90 (153)
Q Consensus 42 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~ 90 (153)
+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++|+++|++.|-+.+.
T Consensus 150 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~ 202 (268)
T 1k82_A 150 KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIK 202 (268)
T ss_dssp CSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 45666677 56889999999999999999965 679999999999988664
No 14
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=89.73 E-value=0.38 Score=39.13 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=41.3
Q ss_pred ceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 031757 43 KRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVSR 91 (153)
Q Consensus 43 k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~~ 91 (153)
.+|..+| +-+-|||.-+|..+|-.+||+|. .+++||++|++.|-+.+..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5677777 44589999999999999999965 6799999999999887643
No 15
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=89.27 E-value=0.1 Score=34.54 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=21.8
Q ss_pred ecccCCCCceeeeecccccccCHHHHHHHHHHcC
Q 031757 35 GNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 35 ~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
.|..++.+.....+|..|+|||+..|..|++.+|
T Consensus 12 ~~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 12 SGLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp -----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hhHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 4556777888899999999999999999999876
No 16
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=88.98 E-value=0.45 Score=39.73 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=44.0
Q ss_pred Cceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhhc
Q 031757 42 DKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVSRY 92 (153)
Q Consensus 42 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~~~ 92 (153)
+.+|..+| +-|-|||.-++..+|-.+||+|. .+++|+++|++.|.+.+...
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~V 228 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRDF 228 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHHH
Confidence 44677777 66889999999999999999965 67999999999999988664
No 17
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=88.47 E-value=0.51 Score=39.20 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCceeeeec---cc-ccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 031757 41 NDKRLETSL---QH-VYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSLREEVS 90 (153)
Q Consensus 41 ~~k~i~~aL---t~-I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L~~~l~ 90 (153)
.+.+|..+| +- |-|||.-+|..+|-.+||+|. .+++|+++|++.|-+.+.
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~ 207 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIK 207 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHH
Confidence 456777777 44 899999999999999999965 679999999999988764
No 18
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=87.70 E-value=0.51 Score=33.35 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCceeeeecccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHHHhhccchH
Q 031757 40 PNDKRLETSLQHVYGIGRSRAHQILCDLNIGN----KLTKELTGVELNSLREEVSRYLTGE 96 (153)
Q Consensus 40 ~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~----~~~~~Ls~~qi~~L~~~l~~~~i~~ 96 (153)
+-|..=...|+.++|||+.+|..|...=++.+ ..+.-+.+..+++|..+++.|.+..
T Consensus 19 diNtAs~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v~~ 79 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTE 79 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEECCC
T ss_pred eCCcCCHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhceeEecC
Confidence 33444456789999999999999999655642 2467799999999999998876643
No 19
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=86.69 E-value=0.8 Score=34.44 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCCceeeeecccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHHHhhccch
Q 031757 39 IPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN----KLTKELTGVELNSLREEVSRYLTG 95 (153)
Q Consensus 39 l~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~----~~~~~Ls~~qi~~L~~~l~~~~i~ 95 (153)
+|=|..=...|+.++|||+..|.+|.+.-.+.+ ..+..+.+.+.+.|.++.+++.+.
T Consensus 55 IniNtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv~ 115 (134)
T 1s5l_U 55 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 115 (134)
T ss_dssp EETTTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEECC
T ss_pred eeCcccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcceeec
Confidence 444555567899999999999999997555642 246789999999999998887653
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=85.45 E-value=0.16 Score=34.56 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=22.7
Q ss_pred ceeeeecccccccCHHHHHHHHHHcC
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
..+..+|+.|+|||...|..|++.+|
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 34667899999999999999999876
No 21
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=83.53 E-value=1.5 Score=38.52 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=39.1
Q ss_pred ccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhcc
Q 031757 50 QHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYL 93 (153)
Q Consensus 50 t~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~~~~ 93 (153)
..+-+||..+|..||..+|++ .....+|+.+|+..|.+.+.++.
T Consensus 261 ~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 261 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE 305 (471)
T ss_dssp TSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCC
T ss_pred ccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhcc
Confidence 558899999999999999999 45679999999999999998764
No 22
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=82.67 E-value=0.21 Score=39.22 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=38.3
Q ss_pred cccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC
Q 031757 24 FHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 24 ~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
+++++.--.|++|-.=..++.++..|.+|.|||+.+|..|+..+|-+
T Consensus 49 ~~~vReda~~l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~ 95 (191)
T 1ixr_A 49 HLLLKEEGLSLYGFPDEENLALFELLLSVSGVGPKVALALLSALPPR 95 (191)
T ss_dssp CCCCCSSCCCEEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHH
T ss_pred EehhhhhhHHhhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChH
Confidence 45666666677777777778888889999999999999999998874
No 23
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=80.65 E-value=0.29 Score=38.67 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.9
Q ss_pred cccceeeeeEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC
Q 031757 24 FHGLRVQGLRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 24 ~~~i~~~~vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
++++|.--.|++|-.=...+.++..|.+|.|||+.+|..|+..+|-+
T Consensus 50 ~~~vReda~~l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~ 96 (203)
T 1cuk_A 50 HFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQ 96 (203)
T ss_dssp EEEEETTEEEEEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHH
T ss_pred EEEEeehhhhhhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChH
Confidence 45677667778888878888888889999999999999999988875
No 24
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=80.61 E-value=0.28 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=22.8
Q ss_pred CceeeeecccccccCHHHHHHHHHHcC
Q 031757 42 DKRLETSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 42 ~k~i~~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
....+.+|+.|+|||...|..|+..+|
T Consensus 9 ~~~~~~~L~~i~giG~~~a~~Ll~~fg 35 (75)
T 1x2i_A 9 AERQRLIVEGLPHVSATLARRLLKHFG 35 (75)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcC
Confidence 344567899999999999999999875
No 25
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=80.08 E-value=0.88 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=22.1
Q ss_pred eeeeecccccccCHHHHHHHHHHcC
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
.+..+|..|+|||+..|..|++.+|
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 4567899999999999999999876
No 26
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=79.51 E-value=0.81 Score=29.82 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=32.0
Q ss_pred eeeeecccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHH
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDLNIGN----KLTKELTGVELNSLREE 88 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~~----~~~~~Ls~~qi~~L~~~ 88 (153)
.-...|..++|||+.+|..|.+...+.+ ..+..+.+...++|..+
T Consensus 24 a~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 24 ASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred CCHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 3455689999999999999999876642 12455677666666543
No 27
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=73.56 E-value=2.5 Score=34.15 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=40.7
Q ss_pred CCCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 031757 40 PNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVS 90 (153)
Q Consensus 40 ~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~ 90 (153)
...|++..+|... |.+......++..+||+ ..+..+||.+|...|.+.++
T Consensus 218 ~rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 218 KRRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp STTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 3467777888654 45777888999999999 66899999999999988774
No 28
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.45 E-value=2 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=31.3
Q ss_pred CceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 031757 42 DKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSL 85 (153)
Q Consensus 42 ~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L 85 (153)
|......|..|+|||+.....|++.+|= -..+.+.|.+|+..+
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~FgS-l~~i~~AS~eEL~~v 55 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHHVKN-IAELAALSQDELTSI 55 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHHSSC-HHHHHHSCHHHHHHH
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHHcCC-HHHHHHCCHHHHHHH
Confidence 3345567899999999999999987762 223456677777666
No 29
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=67.77 E-value=2.8 Score=33.70 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.3
Q ss_pred eecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 031757 47 TSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSL 85 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L 85 (153)
..|..|+|||+..|..+++.+| +-..+.+-+.+|+..+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg-Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG-SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC-SHHHHHTSCHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC-CHHHHHhCCHHHHHHH
Confidence 4678999999999999999987 2223445566766655
No 30
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=66.96 E-value=3 Score=32.37 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred eeeeecccccccCHHHHHHHHHHcCC
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDLNI 69 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~lgi 69 (153)
.....|.+++|||+.+|..||..+|.
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 46778999999999999999987666
No 31
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=65.30 E-value=1.3 Score=35.34 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=31.9
Q ss_pred eEEecccCCCCceeeeecccccccCHHHHHHHHHHcCCC
Q 031757 32 LRVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 32 vrI~~tnl~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
..++|-.-...+.++.-|.++.|||+.+|..|+..++.+
T Consensus 73 ~~LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred cceEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 445665557777888889999999999999999988875
No 32
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=62.71 E-value=5.1 Score=31.78 Aligned_cols=44 Identities=11% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 031757 41 NDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVS 90 (153)
Q Consensus 41 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~ 90 (153)
..|.+..+|..+++ ..++..+|++ +.+..+||.+|...|.+.++
T Consensus 205 rrK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 205 RRKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp TTSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 35667777776554 4568899999 67899999999999988764
No 33
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=60.89 E-value=6.1 Score=33.03 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=39.0
Q ss_pred CceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh
Q 031757 42 DKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 42 ~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~ 91 (153)
++.+...|... +..+.+..+++..|++.+.+.+|+++|.+.|.+.|..
T Consensus 280 ~~~~~~~l~~~--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 327 (401)
T 2gqf_A 280 KQMLKTILVRL--LPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHH 327 (401)
T ss_dssp TSBHHHHHTTT--SCHHHHHHHHHTTSSCCCBGGGCCHHHHHHHHHHHHC
T ss_pred cccHHHHhhhh--cCHHHHHHHHHHcCCCCCchhhCCHHHHHHHHHHHhc
Confidence 45555555553 7789999999999998777899999999999988865
No 34
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=59.58 E-value=8.8 Score=32.41 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=30.9
Q ss_pred eeecccccccCHHHHHHHHHHcCCCc-----cccCCCCHHHHHHHH
Q 031757 46 ETSLQHVYGIGRSRAHQILCDLNIGN-----KLTKELTGVELNSLR 86 (153)
Q Consensus 46 ~~aLt~I~GIG~~~A~~Ic~~lgi~~-----~~~~~Ls~~qi~~L~ 86 (153)
...|++|+|||+.+|..+-+. ||.+ ..-+.|++.|..-|.
T Consensus 101 l~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 356789999999999999887 9973 123678887766664
No 35
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.88 E-value=8.2 Score=25.97 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHcCCCccccCCCCHHHHHHHHH
Q 031757 64 LCDLNIGNKLTKELTGVELNSLRE 87 (153)
Q Consensus 64 c~~lgi~~~~~~~Ls~~qi~~L~~ 87 (153)
+++|||+..--.+||++|+.++..
T Consensus 37 L~kLGI~ktdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 37 LKKLGIHKTDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHTCCCCSTTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCcccCCHHHHhhcee
Confidence 478999977789999999887753
No 36
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=56.80 E-value=5.6 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred eeeeecc-cccccCHHHHHHHHHHcCCC
Q 031757 44 RLETSLQ-HVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 44 ~i~~aLt-~I~GIG~~~A~~Ic~~lgi~ 70 (153)
...-.|. +++|||+.+|..|+..+|.+
T Consensus 121 ~~re~Ll~~LpGVG~KTA~~vL~~~g~~ 148 (214)
T 3fhf_A 121 VAREFLVRNIKGIGYKEASHFLRNVGYD 148 (214)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 4566788 99999999999999887664
No 37
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=56.51 E-value=5.2 Score=31.32 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.5
Q ss_pred eeeeecccccccCHHHHHHHHHHc
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
.....|.+++|||+.+|..|+..+
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH
Confidence 355679999999999999999865
No 38
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=55.73 E-value=14 Score=25.06 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.0
Q ss_pred eeeecccccccCHHHHHHHHHHc---C-CCc----cccCCCCHHHHHHHHH
Q 031757 45 LETSLQHVYGIGRSRAHQILCDL---N-IGN----KLTKELTGVELNSLRE 87 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~l---g-i~~----~~~~~Ls~~qi~~L~~ 87 (153)
-...|..|+|||...|..|+... | +.+ .++..++...++.|.+
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHH
Confidence 34568999999999999999876 2 321 2344466666665543
No 39
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=54.01 E-value=5.1 Score=31.79 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.1
Q ss_pred eecccccccCHHHHHHHHHHcC
Q 031757 47 TSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
-.|++++|||+.+|..|+..+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997664
No 40
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=52.87 E-value=5.5 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred eeeeecc-cccccCHHHHHHHHHHcCC
Q 031757 44 RLETSLQ-HVYGIGRSRAHQILCDLNI 69 (153)
Q Consensus 44 ~i~~aLt-~I~GIG~~~A~~Ic~~lgi 69 (153)
...-.|. +++|||+.+|..+|..+|.
T Consensus 126 ~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 126 QSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3566788 9999999999999977776
No 41
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=51.14 E-value=2.2 Score=36.65 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.4
Q ss_pred Cceeeeec---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHH
Q 031757 42 DKRLETSL---QHVYGIGRSRAHQILCDLNIGNK-LTKELTGV 80 (153)
Q Consensus 42 ~k~i~~aL---t~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~ 80 (153)
+.+|..+| +-|-|||.-+|..+|-.+||+|. .+++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 45566666 55789999999999999999965 56888886
No 42
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=50.80 E-value=6.5 Score=30.38 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.9
Q ss_pred eeeecccccccCHHHHHHHHHHc
Q 031757 45 LETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
....|.+++|||+.+|..|+...
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 55679999999999999999764
No 43
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=50.70 E-value=7.6 Score=30.28 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeeecccccccCHHHHHHHHHHc
Q 031757 45 LETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
....|.+++|||+.+|..|+...
T Consensus 113 ~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 113 NRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHHHh
Confidence 45679999999999999999764
No 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=50.40 E-value=3.3 Score=33.44 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=0.0
Q ss_pred ecccccccCHHHHHHHHHHcCC
Q 031757 48 SLQHVYGIGRSRAHQILCDLNI 69 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~lgi 69 (153)
.|..++|||..+|..|+..+..
T Consensus 49 eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 49 ALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ----------------------
T ss_pred HHHhccCCCHHHHHHHHHHHHH
Confidence 3556677777777777655543
No 45
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=49.73 E-value=7.2 Score=30.45 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=19.8
Q ss_pred eeeecccccccCHHHHHHHHHHc
Q 031757 45 LETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
....|.+++|||+.+|..|+..+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHh
Confidence 45679999999999999998754
No 46
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=49.10 E-value=7.8 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=20.9
Q ss_pred eeeecccccccCHHHHHHHHHH-cCC
Q 031757 45 LETSLQHVYGIGRSRAHQILCD-LNI 69 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~-lgi 69 (153)
....|.+++|||+.+|..|+.. +|.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 5678999999999999999975 344
No 47
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=49.08 E-value=7.9 Score=30.53 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.9
Q ss_pred eeeeecccccccCHHHHHHHHHH-cCC
Q 031757 44 RLETSLQHVYGIGRSRAHQILCD-LNI 69 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~-lgi 69 (153)
.+...|.+++|||+.+|..|+.. +|-
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~alg~ 161 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 56778999999999999999976 344
No 48
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=47.57 E-value=8.2 Score=30.62 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.0
Q ss_pred eeeeecccccccCHHHHHHHHHHc
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
.+...|+.++|||+.+|..||...
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 467789999999999999998764
No 49
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=47.14 E-value=7.8 Score=31.26 Aligned_cols=24 Identities=29% Similarity=0.240 Sum_probs=20.6
Q ss_pred eeeeecccccccCHHHHHHHHHHc
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
.+...|++++|||+.+|..||...
T Consensus 204 ~~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 204 QAMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHh
Confidence 356789999999999999999753
No 50
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=46.24 E-value=8.4 Score=29.89 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.2
Q ss_pred eecccccccCHHHHHHHHHHcC
Q 031757 47 TSLQHVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~lg 68 (153)
-.|++++|||+.+|..|...+.
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3689999999999999997774
No 51
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=46.18 E-value=12 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=31.6
Q ss_pred CCceeeeecccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHHHHHHHHhh
Q 031757 41 NDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 41 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~-~~~~~Ls~~qi~~L~~~l~~ 91 (153)
..|++..+|... .+..+||++ .+..+||.+|+..|.+.+++
T Consensus 205 rrk~l~~~l~~~----------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 205 RRKVLRKKIPEE----------LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp TTSCGGGTSCHH----------HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred cChhHHHHHHHH----------HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 345566666543 789999994 79999999999999887753
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=46.10 E-value=8.1 Score=34.30 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.4
Q ss_pred ceeeeecccccccCHHHHHHHHHHcCCC
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
...+..|.+|+|||+.+|..++..+|+.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 4456778999999999999999998886
No 53
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=45.89 E-value=9.9 Score=29.95 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeeecccccccCHHHHHHHHHH
Q 031757 45 LETSLQHVYGIGRSRAHQILCD 66 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~ 66 (153)
+...|+.++|||+.+|..|+..
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHH
Confidence 5778999999999999999965
No 54
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=45.89 E-value=10 Score=28.59 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=17.7
Q ss_pred eecccccccCHHHHHHHHHHc
Q 031757 47 TSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~l 67 (153)
..|.+++|||+.+|..++--+
T Consensus 104 ~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 104 KYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp SSGGGSTTCCHHHHHHHHHHT
T ss_pred hhhhcCCCchHHHHHHHHHHH
Confidence 478999999999999987543
No 55
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=45.86 E-value=9.5 Score=29.31 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=21.6
Q ss_pred eeeecccccccCHHHHHHHHHHcCC
Q 031757 45 LETSLQHVYGIGRSRAHQILCDLNI 69 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~lgi 69 (153)
....|..|+|||...|..|++.+|=
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 4456899999999999999999873
No 56
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=45.63 E-value=8.6 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred eeeeecccccccCHHHHHHHHHH-cC
Q 031757 44 RLETSLQHVYGIGRSRAHQILCD-LN 68 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~-lg 68 (153)
.+...|.+++|||+.+|..||.. +|
T Consensus 207 e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 207 EAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 35678999999999999999986 46
No 57
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=45.47 E-value=4.4 Score=32.56 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=0.0
Q ss_pred ceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSL 85 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L 85 (153)
.....+|..|+|||+..|..|++.+|=- ..+.+-+.+|+..+
T Consensus 169 ~~~~s~L~~IpGIG~k~ak~Ll~~FGSl-~~i~~As~eeL~~V 210 (226)
T 3c65_A 169 TMFHSVLDDIPGVGEKRKKALLNYFGSV-KKMKEATVEELQRA 210 (226)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccCCCCHHHHHHHHHHhCCH-HHHHhCCHHHHHHc
Confidence 3456789999999999999999987631 12233344454444
No 58
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=45.45 E-value=8.4 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.1
Q ss_pred eecccccccCHHHHHHHHHHc
Q 031757 47 TSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~l 67 (153)
-.|++++|||+.+|..|+..+
T Consensus 108 ~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 108 GALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHH
Confidence 358999999999999998655
No 59
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=45.08 E-value=9.6 Score=31.82 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=31.4
Q ss_pred eeeecccccccCHHHHHHHHHHcCCCc--c--c-cCCCCHHHHHHHH
Q 031757 45 LETSLQHVYGIGRSRAHQILCDLNIGN--K--L-TKELTGVELNSLR 86 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~lgi~~--~--~-~~~Ls~~qi~~L~ 86 (153)
....|++|+|||+.+|..+-.. |+.+ . . -+.|+..|..-|.
T Consensus 96 ~l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~ 141 (335)
T 2fmp_A 96 SINFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLK 141 (335)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHH
Confidence 4456899999999999999888 9973 1 2 3778887666554
No 60
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=44.55 E-value=9 Score=31.25 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=29.2
Q ss_pred ceeeeecccccccCHHHHHHHHHH-cCCCccccCCCCHHHHHHHHHHH
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCD-LNIGNKLTKELTGVELNSLREEV 89 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~-lgi~~~~~~~Ls~~qi~~L~~~l 89 (153)
......|..++|||+.+|..||.. +|-.+.-. . |..+.++...+
T Consensus 207 ~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fp--v-D~~v~r~~~rl 251 (290)
T 3i0w_A 207 NECHEELKKFMGVGPQVADCIMLFSMQKYSAFP--V-DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCC--C-CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcce--e-cHHHHHHHHHh
Confidence 346778999999999999999976 45432211 1 34555555443
No 61
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=44.52 E-value=10 Score=29.74 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.2
Q ss_pred ceeeeecccccccCHHHHHHHHHHc
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
..+...|+.++|||+.+|..+|...
T Consensus 142 ~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 142 ELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3467789999999999999999763
No 62
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=43.51 E-value=21 Score=30.00 Aligned_cols=50 Identities=12% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhc
Q 031757 41 NDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSRY 92 (153)
Q Consensus 41 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~~ 92 (153)
+++.+...|.. .+..+.+..+|+.+++.++++.+|+++++++|.+.|..+
T Consensus 298 ~~~~~~~~l~~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 347 (417)
T 3v76_A 298 GRQAVQTALAD--ILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQVW 347 (417)
T ss_dssp CSSBHHHHHTT--TSCHHHHHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHSE
T ss_pred hhhhHHHHHHH--HhhHHHHHHHHHhcCCCCCchhhCCHHHHHHHHHHhcCC
Confidence 34444444543 377899999999999965678999999999999998753
No 63
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=42.80 E-value=4.8 Score=32.53 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=34.1
Q ss_pred CCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 031757 41 NDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVS 90 (153)
Q Consensus 41 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l~ 90 (153)
..|.+..+|..+++ ..++..+||+ +.+..+||.+|+..|.+.++
T Consensus 229 rrK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 273 (279)
T 3uzu_A 229 RRKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVA 273 (279)
T ss_dssp TTSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence 45667777776654 2456788999 67899999999999988774
No 64
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=41.40 E-value=7.8 Score=32.40 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCCceeeeecccccccCHHHHHHHHHHcCCCc----cccCCCCHHHH
Q 031757 40 PNDKRLETSLQHVYGIGRSRAHQILCDLNIGN----KLTKELTGVEL 82 (153)
Q Consensus 40 ~~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~----~~~~~Ls~~qi 82 (153)
...-++..-|++|+|||+.+|..+-.. |+.+ ....+++.+|-
T Consensus 89 ~~~~p~l~ll~~v~GiG~k~a~~l~~~-Gi~tledL~~a~~~k~~q~ 134 (335)
T 2bcq_A 89 SESVPVLELFSNIWGAGTKTAQMWYQQ-GFRSLEDIRSQASLTTQQA 134 (335)
T ss_dssp CTTHHHHHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHHCCCCHHHH
T ss_pred hhhhHHHHHHhcCCCcCHHHHHHHHHc-CCCCHHHHHHHhcccHHHH
Confidence 344444444579999999999999877 9973 12345555443
No 65
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=40.37 E-value=40 Score=29.91 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=37.3
Q ss_pred ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhhc
Q 031757 50 QHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRY 92 (153)
Q Consensus 50 t~I~GIG~~~A~~Ic~~lgi~~~~-~~~Ls~~qi~~L~~~l~~~ 92 (153)
..+-++|...|..+|..+|+++.. ..+|+.+|+..+.+.+.++
T Consensus 260 ~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 260 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 557789999999999999999554 6899999999999888754
No 66
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=39.50 E-value=12 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.1
Q ss_pred eeeeecccccccCHHHHHHHHHHc
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
.....|..++|||+.+|..||...
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 567789999999999999999763
No 67
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.16 E-value=50 Score=24.68 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
+..||++|.+.|.++|..
T Consensus 14 Ls~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 689999999999999975
No 68
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=38.95 E-value=13 Score=31.69 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=29.5
Q ss_pred eeecccccccCHHHHHHHHHHcCCCc--c-c---cCCCCHHHHHHHH
Q 031757 46 ETSLQHVYGIGRSRAHQILCDLNIGN--K-L---TKELTGVELNSLR 86 (153)
Q Consensus 46 ~~aLt~I~GIG~~~A~~Ic~~lgi~~--~-~---~~~Ls~~qi~~L~ 86 (153)
...|.+|+|||+.+|..+-+. ||.+ . + ...|++.|..-|.
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl~ 165 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGFL 165 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHHH
Confidence 456789999999999999887 9973 1 2 2367776665554
No 69
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=38.82 E-value=12 Score=31.20 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.3
Q ss_pred eeeecccccccCHHHHHHHHHHc
Q 031757 45 LETSLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 45 i~~aLt~I~GIG~~~A~~Ic~~l 67 (153)
....|.+++|||+.+|..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 56789999999999999999775
No 70
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=37.91 E-value=95 Score=21.20 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.5
Q ss_pred ecccccccCHHHHHHHHHHcCCC
Q 031757 48 SLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
-|+++++||+.++..+ .++||+
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~ 26 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIK 26 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCC
T ss_pred HhhcCCCCCHHHHHHH-HHcCCC
Confidence 5899999999998876 899998
No 71
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=36.26 E-value=18 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.8
Q ss_pred eecccccccCHHHHHHHHH
Q 031757 47 TSLQHVYGIGRSRAHQILC 65 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~ 65 (153)
..|..++|||+.+|.+|..
T Consensus 132 ~eL~~LpGIG~k~A~~IIe 150 (205)
T 2i5h_A 132 HQLELLPGVGKKMMWAIIE 150 (205)
T ss_dssp BGGGGSTTCCHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHH
Confidence 3588999999999999985
No 72
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=35.82 E-value=27 Score=27.93 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=45.7
Q ss_pred eeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh--------------------------------
Q 031757 44 RLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSR-------------------------------- 91 (153)
Q Consensus 44 ~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~-------------------------------- 91 (153)
.+..+|.+.+|||++.|..+.--+ =.-.+++...|.+.|..
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hL-------L~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~ 95 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFI-------INMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHST 95 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHH-------TTSCHHHHHHHHHHHHHHHHHCEECTTTCCEESSSSCHHHHCTTSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCcCCCCCCCCCCCCE
Confidence 456789999999999999997443 12246667777666531
Q ss_pred -ccchHHHHHHHHHhHHHHHhhhhccCCccCCC
Q 031757 92 -YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQG 123 (153)
Q Consensus 92 -~~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~G 123 (153)
-.||+. .|+--+-+.+.|+|+=|-+|
T Consensus 96 iCVVE~~------~Dv~aiE~t~~y~G~YhVLg 122 (212)
T 3vdp_A 96 ICVVSHP------MDVVAMEKVKEYKGVYHVLH 122 (212)
T ss_dssp EEEESSH------HHHHHHHTTSCCCEEEEECS
T ss_pred EEEECCH------HHHHHHHhhCccceEEEecC
Confidence 123332 24455677889999999887
No 73
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=35.03 E-value=16 Score=32.56 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.7
Q ss_pred ceeeeecccccccCHHHHHHHHHHcCCC
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDLNIG 70 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~ 70 (153)
+.....|.+|+|||+.+|..|... |+.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 345667899999999999999987 775
No 74
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.33 E-value=9.7 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCceeeeecccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHH
Q 031757 41 NDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV 89 (153)
Q Consensus 41 ~~k~i~~aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L~~~l 89 (153)
..|.+..+|..+++- ..+..+||+ +.+..+||.+|...|.+.+
T Consensus 211 rrK~l~~~L~~~~~~------~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 211 RRKTVGNALKKLINP------SQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp TTSCHHHHTTTTCCG------GGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred cChHHHHHHhhhCCH------HHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 356677777665431 346889999 6789999999999998765
No 75
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=32.73 E-value=33 Score=29.29 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.4
Q ss_pred ecccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHH
Q 031757 48 SLQHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNS 84 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~ 84 (153)
-+..+.|||+.++..++..+||... -+-.++.+++.+
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~ 291 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHH
Confidence 4578999999999999999999843 345566666544
No 76
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=31.92 E-value=16 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=33.0
Q ss_pred ecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh
Q 031757 48 SLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~ 91 (153)
.|+.++|||..++.+|..-+.+..+...-+.-+|.+.+.+.|..
T Consensus 132 ~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e~~~~~~~i~~ 175 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATILENVVFLFEARQRQSLRAGLAVAEELAG 175 (578)
T ss_dssp TTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHHHHHHHHHHHH
Confidence 68899999999999997766665444455666777777766643
No 77
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=31.06 E-value=81 Score=20.41 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCC--c-----cccCCCCHHHHHHHHHHHhhccchHHHHHHHHHh
Q 031757 58 SRAHQILCDLNIG--N-----KLTKELTGVELNSLREEVSRYLTGEDLRRCIKND 105 (153)
Q Consensus 58 ~~A~~Ic~~lgi~--~-----~~~~~Ls~~qi~~L~~~l~~~~i~~dL~~~~~~d 105 (153)
..|..|.+.+|+. . ..++.+|-+|+..|-+.-..-+...||+..+++=
T Consensus 4 pas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I 58 (67)
T 1qa6_A 4 PAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMI 58 (67)
T ss_dssp CHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhcccCHHHHHHHH
Confidence 3577888999986 1 2469999999999987654444556676666543
No 78
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=29.96 E-value=23 Score=31.98 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred eeecccccccCHHHHHHHHHHcCCCc---------cccCCCCHHHHHHHH
Q 031757 46 ETSLQHVYGIGRSRAHQILCDLNIGN---------KLTKELTGVELNSLR 86 (153)
Q Consensus 46 ~~aLt~I~GIG~~~A~~Ic~~lgi~~---------~~~~~Ls~~qi~~L~ 86 (153)
..-|++|.|||+-+|..+++++|=-. .+..-+.+.|+..|.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI~ 516 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELK 516 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHHh
Confidence 46689999999999999999988531 123455666665553
No 79
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=29.88 E-value=19 Score=29.58 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.5
Q ss_pred eeeccc-ccccCHHHHHHHHHHc
Q 031757 46 ETSLQH-VYGIGRSRAHQILCDL 67 (153)
Q Consensus 46 ~~aLt~-I~GIG~~~A~~Ic~~l 67 (153)
...|.. ++|||+.+|..|+..+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh
Confidence 567877 9999999999998653
No 80
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=29.08 E-value=40 Score=27.17 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=45.8
Q ss_pred ceeeeecccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh-------------------------------
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVSR------------------------------- 91 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~------------------------------- 91 (153)
..+..+|.+.+|||++.|..+.--+ =+-.+++...|.+.|..
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hL-------L~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~ 80 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHL-------FEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQR 80 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHH-------SSSCHHHHHHHHHHHHHHHHHCEECSSSCCEESSSSCHHHHCSSSCTT
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCC
Confidence 4466789999999999999997543 12346667777666531
Q ss_pred --ccchHHHHHHHHHhHHHHHhhhhccCCccCCC
Q 031757 92 --YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQG 123 (153)
Q Consensus 92 --~~i~~dL~~~~~~dI~rL~~I~sYRG~RH~~G 123 (153)
-.+|+ -.|+--+-+.+.|+|+=|-+|
T Consensus 81 ~iCVVE~------~~Dv~aiE~t~~y~G~YhVLg 108 (228)
T 1vdd_A 81 TICVVEE------PGDVIALERSGEYRGLYHVLH 108 (228)
T ss_dssp EEEEESS------HHHHHHTTTTSSCCSEEEECS
T ss_pred eEEEECC------HHHHHHHHHhcccceEEEecC
Confidence 01232 124555677889999988876
No 81
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=28.80 E-value=27 Score=23.71 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=16.6
Q ss_pred ecccccccCHHHHHHHHHHc
Q 031757 48 SLQHVYGIGRSRAHQILCDL 67 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~l 67 (153)
.+..+.|||..++..|-++|
T Consensus 59 e~~~L~giG~ki~~~L~e~L 78 (87)
T 2kp7_A 59 EAKILQHFGDRLCRMLDEKL 78 (87)
T ss_dssp HHHTCTTTCHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHHHHHHH
Confidence 35789999999999988765
No 82
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=28.05 E-value=20 Score=29.13 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=40.4
Q ss_pred CCCceeeeeccccc---ccCHHHHHHHHHHc-----CCC---ccccCCCCHHHHHHHHHHHhh
Q 031757 40 PNDKRLETSLQHVY---GIGRSRAHQILCDL-----NIG---NKLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 40 ~~~k~i~~aLt~I~---GIG~~~A~~Ic~~l-----gi~---~~~~~~Ls~~qi~~L~~~l~~ 91 (153)
...|.+..+|.... |+.+..+..++..+ |++ +.+..+||.+|+..|.+.+.+
T Consensus 225 ~rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 225 HRNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp TTTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 34677888887653 45677788888888 787 468899999999999888754
No 83
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.27 E-value=49 Score=30.43 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=30.0
Q ss_pred cccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHH
Q 031757 49 LQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSL 85 (153)
Q Consensus 49 Lt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls~~qi~~L 85 (153)
.-+|.|+|..++.++.....|. ..-+-.|+.+++..|
T Consensus 448 aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l 485 (671)
T 2owo_A 448 AMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485 (671)
T ss_dssp TTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS
T ss_pred hcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcc
Confidence 3589999999999999999997 445777887776554
No 84
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=26.57 E-value=21 Score=31.66 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=29.1
Q ss_pred cccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHh
Q 031757 49 LQHVYGIGRSRAHQILCDLNIGNKLTKELTGVELNSLREEVS 90 (153)
Q Consensus 49 Lt~I~GIG~~~A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~ 90 (153)
|++++|||+.+|..|+.-+........-+.-+|.+.+.+.+.
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~~~e~~~~~~~i~ 171 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLL 171 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHhccceeHHHHHHHHHHHH
Confidence 789999999999999765554333334455566766665553
No 85
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=25.56 E-value=35 Score=28.04 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.4
Q ss_pred cccccCHHHHHHHHHHcC
Q 031757 51 HVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 51 ~I~GIG~~~A~~Ic~~lg 68 (153)
.++|||+.+|..+++..|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999999877
No 86
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=24.98 E-value=34 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=16.1
Q ss_pred cccccCHHHHHHHHHHcC
Q 031757 51 HVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 51 ~I~GIG~~~A~~Ic~~lg 68 (153)
.|+|||+.+|..+++..|
T Consensus 236 gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 479999999999998876
No 87
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=24.97 E-value=77 Score=30.07 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=33.3
Q ss_pred ceeeeecccccccCHHHHHHHHHHc--C--CCc-----ccc--CCCCHHHHHHHHH
Q 031757 43 KRLETSLQHVYGIGRSRAHQILCDL--N--IGN-----KLT--KELTGVELNSLRE 87 (153)
Q Consensus 43 k~i~~aLt~I~GIG~~~A~~Ic~~l--g--i~~-----~~~--~~Ls~~qi~~L~~ 87 (153)
..|.++|..|+|+|...+..|.+.= | +.+ .++ ..++...++.|..
T Consensus 829 ~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~ 884 (910)
T 2hnh_A 829 GEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884 (910)
T ss_dssp SCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHH
T ss_pred CeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHH
Confidence 3699999999999999999988654 2 321 244 3578887777765
No 88
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=24.50 E-value=87 Score=24.59 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHHHhh
Q 031757 60 AHQILCDLNIGNKLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 60 A~~Ic~~lgi~~~~~~~Ls~~qi~~L~~~l~~ 91 (153)
+..++..+|+++.+..+||.+|...|.+.+.+
T Consensus 248 ~~~~l~~~~~~~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 248 IQQILTSTGFSDKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp HHHHHHHHTCTTCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 35667889999779999999999999988754
No 89
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=24.15 E-value=50 Score=20.25 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999864
No 90
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=23.87 E-value=46 Score=32.25 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=30.2
Q ss_pred eeeeEEecccCCCCc---------eeeeecccccccCHHHHHHHHHH
Q 031757 29 VQGLRVGNTEIPNDK---------RLETSLQHVYGIGRSRAHQILCD 66 (153)
Q Consensus 29 ~~~vrI~~tnl~~~k---------~i~~aLt~I~GIG~~~A~~Ic~~ 66 (153)
.+-+.++..||+.+. .|.++|..|+|+|...|..|.+.
T Consensus 940 ~~Gi~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~a 986 (1041)
T 3f2b_A 940 ERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRA 986 (1041)
T ss_dssp HTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHH
T ss_pred HcCCeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHH
Confidence 344677777766554 69999999999999999999863
No 91
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=23.83 E-value=54 Score=20.33 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.1
Q ss_pred cccCCCCHHHHHHHHHHHhh
Q 031757 72 KLTKELTGVELNSLREEVSR 91 (153)
Q Consensus 72 ~~~~~Ls~~qi~~L~~~l~~ 91 (153)
.....||++|+..|..+|..
T Consensus 57 ~~~~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 57 AYDGRADREDLVKAIEYMLS 76 (78)
T ss_dssp CCBTTBCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 33468999999999998854
No 92
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=23.58 E-value=52 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999998854
No 93
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.59 E-value=90 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.3
Q ss_pred ccCCCCHHHHHHHHHHHhh
Q 031757 73 LTKELTGVELNSLREEVSR 91 (153)
Q Consensus 73 ~~~~Ls~~qi~~L~~~l~~ 91 (153)
.+..||++|.+.|.+.|..
T Consensus 6 dls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 6 KQEELTDEEKEIINRVIAR 24 (134)
T ss_dssp --CCCCSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhh
Confidence 3578999999999999875
No 94
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=22.58 E-value=61 Score=22.49 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.7
Q ss_pred eecccccccCHHHHHHHHHHcCCCc
Q 031757 47 TSLQHVYGIGRSRAHQILCDLNIGN 71 (153)
Q Consensus 47 ~aLt~I~GIG~~~A~~Ic~~lgi~~ 71 (153)
-.++.+.|||+..+..+-. .||+.
T Consensus 18 K~V~evpGIG~~~~~~L~~-~Gf~k 41 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE-RGFDK 41 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH-TTCCS
T ss_pred CCcccCCCcCHHHHHHHHH-cCccH
Confidence 3578999999999999887 89984
No 95
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=22.46 E-value=49 Score=20.27 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 69 ~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 69 KGLSDAELKALADFILS 85 (87)
T ss_dssp GGCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 58999999999998864
No 96
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=22.29 E-value=56 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
.+.||++|++.|..+|..
T Consensus 63 ~~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 63 KGRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 368999999999998864
No 97
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=21.71 E-value=84 Score=25.59 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.0
Q ss_pred cccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHH
Q 031757 49 LQHVYGIGRSRAHQILCDLNIGNK-LTKELTGVELNSL 85 (153)
Q Consensus 49 Lt~I~GIG~~~A~~Ic~~lgi~~~-~~~~Ls~~qi~~L 85 (153)
++.+.|||+.++..+ ..+||... -+-.++.+++.+.
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~~ 216 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKGM 216 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHHh
Confidence 689999999988875 78999843 3455666655443
No 98
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=21.51 E-value=46 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.5
Q ss_pred cccccCHHHHHHHHHHcC
Q 031757 51 HVYGIGRSRAHQILCDLN 68 (153)
Q Consensus 51 ~I~GIG~~~A~~Ic~~lg 68 (153)
.++|||+.+|..+++..|
T Consensus 239 Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 689999999999999876
No 99
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=21.50 E-value=58 Score=20.07 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhh
Q 031757 76 ELTGVELNSLREEVSR 91 (153)
Q Consensus 76 ~Ls~~qi~~L~~~l~~ 91 (153)
.||++|+..|..+|..
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999998854
No 100
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=21.45 E-value=63 Score=19.44 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 53 ~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp CSSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 78999999999998854
No 101
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=21.32 E-value=60 Score=20.66 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHh
Q 031757 76 ELTGVELNSLREEVS 90 (153)
Q Consensus 76 ~Ls~~qi~~L~~~l~ 90 (153)
.||++|+..|..+|.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999999874
No 102
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=20.99 E-value=52 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 57999999999998853
No 103
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=20.90 E-value=66 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.6
Q ss_pred cccccccCHHHHHHHHHHcCCCc
Q 031757 49 LQHVYGIGRSRAHQILCDLNIGN 71 (153)
Q Consensus 49 Lt~I~GIG~~~A~~Ic~~lgi~~ 71 (153)
+..+.|||+.++..+ ..+||..
T Consensus 186 v~~l~giG~~~~~~L-~~~Gi~T 207 (221)
T 1im4_A 186 IDEIPGIGSVLARRL-NELGIQK 207 (221)
T ss_dssp GGGSTTCCHHHHHHH-HHTTCCB
T ss_pred cccccCCCHHHHHHH-HHcCCCc
Confidence 689999999988875 8899973
No 104
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=20.77 E-value=57 Score=20.16 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
...||++|+..|..+|..
T Consensus 69 ~~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 69 GGRLSDADIANVAAYIAD 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 368999999999999864
No 105
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=20.71 E-value=52 Score=20.30 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 031757 75 KELTGVELNSLREEVSR 91 (153)
Q Consensus 75 ~~Ls~~qi~~L~~~l~~ 91 (153)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999998853
No 106
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=20.41 E-value=1e+02 Score=20.42 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCC--c-----cccCCCCHHHHHHHHHHHhhccchHHHHHHHHHhH
Q 031757 58 SRAHQILCDLNIG--N-----KLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDV 106 (153)
Q Consensus 58 ~~A~~Ic~~lgi~--~-----~~~~~Ls~~qi~~L~~~l~~~~i~~dL~~~~~~dI 106 (153)
..|..|.+.+|+. . ..++.+|-+|+..|-+.-..-+...||+..+++=+
T Consensus 9 pas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~ 64 (76)
T 1hc8_A 9 PAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIE 64 (76)
T ss_dssp CHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4577888999996 1 24689999999999876544344566766665443
No 107
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=20.39 E-value=64 Score=20.20 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
.+.||++|+..|..+|..
T Consensus 67 ~~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 67 ADRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 358999999999999864
No 108
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=20.28 E-value=65 Score=19.95 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
.+.||++|+..|..+|..
T Consensus 65 ~~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 65 SGTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 357999999999999864
No 109
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=20.22 E-value=77 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 031757 74 TKELTGVELNSLREEVSR 91 (153)
Q Consensus 74 ~~~Ls~~qi~~L~~~l~~ 91 (153)
.+.||++|+..|..+|..
T Consensus 64 ~~~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 64 GGRLSDEEIANVAAYVLA 81 (88)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 357999999999999864
No 110
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=20.19 E-value=66 Score=19.66 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhh
Q 031757 76 ELTGVELNSLREEVSR 91 (153)
Q Consensus 76 ~Ls~~qi~~L~~~l~~ 91 (153)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999864
No 111
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=20.17 E-value=53 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCC--cccc-CCCCHHHHHHHHHHHhhc
Q 031757 57 RSRAHQILCDLNIG--NKLT-KELTGVELNSLREEVSRY 92 (153)
Q Consensus 57 ~~~A~~Ic~~lgi~--~~~~-~~Ls~~qi~~L~~~l~~~ 92 (153)
......+|+..|.. ++-. ++||+.|+..|...|++.
T Consensus 14 ~~kv~k~l~~yg~rvQ~SVFeg~lt~~~~~~L~~~l~~~ 52 (85)
T 2i0x_A 14 VNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKI 52 (85)
T ss_dssp HHHHHHHHTTTSEEEETTEEEEECCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcccceeEEEEECCHHHHHHHHHHHHHh
Confidence 45667788888865 4433 999999999999888764
No 112
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=20.12 E-value=44 Score=27.76 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.4
Q ss_pred ecccccccCHHHHHHHHHHcCCC-ccccCCCC
Q 031757 48 SLQHVYGIGRSRAHQILCDLNIG-NKLTKELT 78 (153)
Q Consensus 48 aLt~I~GIG~~~A~~Ic~~lgi~-~~~~~~Ls 78 (153)
.|+.++|||+.+|..|..-+.=. ...+.+|.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 48999999999999999887744 44556664
Done!