BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031758
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
          mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
          SV=1
          Length = 537

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 10 SSSLTNELFGSKESSSSSGIFGSIFSPPSKVLGRESLHSESMEKKHDSSKEAWNTKPTTP 69
          S+S T+ L   +   S++ I  ++  P S +L  E   ++++EK H   K+ +   PT+P
Sbjct: 26 STSATSLLSDHENDESAATITAAVSVPISPLLTPED--TQTVEKFHSIIKDHYRKNPTSP 83

Query: 70 GDA 72
           DA
Sbjct: 84 NDA 86


>sp|P00099|CY551_PSEAE Cytochrome c-551 OS=Pseudomonas aeruginosa (strain ATCC 15692 /
           PAO1 / 1C / PRS 101 / LMG 12228) GN=nirM PE=1 SV=2
          Length = 104

 Score = 32.0 bits (71), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 72  ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPNS 121
           A  + +T+  G AYKD+++ +  Q      L+  I  G Q V+   P PPN+
Sbjct: 36  ACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA 87


>sp|Q89AJ6|ODO2_BUCBP Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex OS=Buchnera
           aphidicola subsp. Baizongia pistaciae (strain Bp)
           GN=sucB PE=3 SV=1
          Length = 410

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 7/49 (14%)

Query: 6   QTGSSSSLT-NELFGSKESSSSSGIFGSIFSPP------SKVLGRESLH 47
           + G +S LT ++L G   + ++ G+FGS+FS P      S +LG  ++H
Sbjct: 309 EKGKNSKLTIDDLIGGNFTITNGGVFGSLFSTPLINPPQSAILGMHAIH 357


>sp|P95339|CY552_NITEU Cytochrome c-552 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
           14298) GN=cyt PE=1 SV=2
          Length = 103

 Score = 30.4 bits (67), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 72  ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPN 120
           A    ET+  G A KD+++ Y D+     +L+  I  G   V+   P PPN
Sbjct: 34  ACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPN 84


>sp|Q04894|ADH6_YEAST NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=ADH6 PE=1 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 99  PCHLSSSIYYGGQDVYSPRPPNSQGPG 125
           P HL++ +  GG  VYSP   N  GPG
Sbjct: 154 PSHLAAPLLCGGLTVYSPLVRNGCGPG 180


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.122    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,299,639
Number of Sequences: 539616
Number of extensions: 2404384
Number of successful extensions: 4867
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 4242
Number of HSP's gapped (non-prelim): 468
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)