BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031759
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 98/153 (64%), Gaps = 3/153 (1%)
Query: 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA 61
SL G++E VEIKA A F K HHVS A P +Q DL EG+WG GS++F Y
Sbjct: 14 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62 NEGKSDLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTPK--GEGSFVTWTL 119
++G++ ++ K +E ++ + N ITF+VIEG+L+ +YKSF QVTPK G GS V W L
Sbjct: 74 HDGEAKVA-KERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHL 132
Query: 120 KYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 152
+YEK +E V P +LQ CV+V+K++ L+ +
Sbjct: 133 EYEKISEEVAHPETLLQFCVEVSKEIDEHLLAE 165
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 71 KVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTP--KGEGSFVTWTLKYEKPNENV 128
K +E +D T + + +K+ VTP G+GS V WT +EK ++++
Sbjct: 37 KTEIEAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDI 96
Query: 129 PEPAAMLQLCV 139
+P +++ V
Sbjct: 97 DDPHSIIDESV 107
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 31 VSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIE 90
V P+ V+ V ++EG+ G +IF + +VI E D ++ I +V+E
Sbjct: 30 VPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVIT-EYDELSHTIGLQVVE 88
Query: 91 GNLLDQYKSFC-CFFQVTPKGEG-SFVTWTLKYEKPNENVPE 130
G L+Q S+ FQ + E + V + Y+ +E + E
Sbjct: 89 GGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDHESELIEE 130
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGK 65
Q E V ++A + + + F + V P V+ V L+EG+ G G+++ + E
Sbjct: 8 QTELSVRLEALWAVLSKDFITV---VPKVLPHIVKDVQLIEGD-GGVGTILIFNFLPEVS 63
Query: 66 SDLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSF 100
+ I E D +++I +VIEG L Q S+
Sbjct: 64 PSYQREEITE-FDESSHEIGLQVIEGGYLSQGLSY 97
>pdb|1INP|A Chain A, Crystal Structure Of Inositol Polyphosphate 1-phosphatase
At 2.3 Angstroms Resolution
Length = 400
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 45 LEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF--KVIEGNLL 94
+E ++ G IFG +NE +DL K+IM E + KV+ GN L
Sbjct: 65 MENKFPGLGKKIFGEESNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKL 116
>pdb|4DOL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid
Binding Protein At1g53520 (Atfap3)
Length = 217
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQS-----VDLLEGEWGKAGSVIFGRYANEG 64
GV++ A V E S L + D++Q V + + + K+ ++ R
Sbjct: 52 GVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVR----- 106
Query: 65 KSDLSCKVIMEEIDYENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFV--TW 117
D+ K + +D E K +FCC FQ P +GS + TW
Sbjct: 107 --DVDGKTFWDALD-EAISPRIKSPSSEDTTALSTFCCIFQNRPLNKGSVILLTW 158
>pdb|1QRB|A Chain A, Plasticity And Steric Strain In A Parallel Beta-Helix:
Rational Mutations In P22 Tailspike Protein
Length = 559
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 23 YFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA 61
+FC + + S D + + + L G+WGK VI GR++
Sbjct: 181 HFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRFS 220
>pdb|3TS0|A Chain A, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
pdb|3TS0|B Chain B, Mouse Lin28a In Complex With Let-7f-1 Microrna Pre-Element
Length = 146
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE 48
E K P + +FC ++H+ ++CP K Q +G+
Sbjct: 110 ECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK 146
>pdb|3TRZ|A Chain A, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|B Chain B, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|C Chain C, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|D Chain D, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|E Chain E, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TRZ|F Chain F, Mouse Lin28a In Complex With Let-7d Microrna Pre-Element
pdb|3TS2|A Chain A, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
pdb|3TS2|B Chain B, Mouse Lin28a In Complex With Let-7g Microrna Pre-Element
Length = 148
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE 48
E K P + +FC ++H+ ++CP K Q +G+
Sbjct: 112 ECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQGK 148
>pdb|2CQF|A Chain A, Solution Structure Of The Zinc-Finger Domain In Lin-28
Length = 63
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAG 53
E K P + +FC + H+ ++CP K Q +G +G
Sbjct: 22 ECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQGSGPSSG 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,896,954
Number of Sequences: 62578
Number of extensions: 203675
Number of successful extensions: 522
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 14
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)