Query 031759
Match_columns 153
No_of_seqs 111 out of 780
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.7E-44 3.8E-49 267.1 19.2 150 2-152 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.6E-37 5.6E-42 227.6 20.4 144 5-152 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.7E-16 3.7E-21 112.6 17.1 134 6-149 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 1.1E-13 2.3E-18 98.2 20.1 107 5-123 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 7.8E-14 1.7E-18 100.4 16.0 109 7-125 1-116 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.6 1.5E-12 3.3E-17 92.6 18.3 113 6-126 3-115 (140)
7 cd08865 SRPBCC_10 Ligand-bindi 99.5 8.9E-13 1.9E-17 93.2 15.4 108 7-123 1-108 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.4 2.1E-11 4.6E-16 87.5 14.5 112 7-126 1-113 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.4 1.3E-11 2.9E-16 88.6 12.6 108 8-126 2-110 (138)
10 cd07812 SRPBCC START/RHO_alpha 99.4 5.9E-11 1.3E-15 81.8 15.4 112 8-127 2-114 (141)
11 cd07820 SRPBCC_3 Ligand-bindin 99.4 3E-11 6.5E-16 87.0 13.8 110 7-124 1-112 (137)
12 cd08860 TcmN_ARO-CYC_like N-te 99.3 1.6E-10 3.4E-15 84.9 15.6 115 5-127 1-116 (146)
13 cd08862 SRPBCC_Smu440-like Lig 99.3 3E-10 6.6E-15 80.6 16.5 106 6-124 2-108 (138)
14 cd07824 SRPBCC_6 Ligand-bindin 99.3 8.7E-10 1.9E-14 80.1 16.6 109 7-125 3-113 (146)
15 cd07822 SRPBCC_4 Ligand-bindin 99.3 1.1E-09 2.4E-14 77.4 16.7 109 6-123 1-111 (141)
16 cd07814 SRPBCC_CalC_Aha1-like 99.2 4.8E-10 1E-14 79.5 14.1 111 7-125 2-112 (139)
17 cd05018 CoxG Carbon monoxide d 99.2 5.5E-10 1.2E-14 79.7 14.0 112 6-126 2-115 (144)
18 cd07818 SRPBCC_1 Ligand-bindin 99.2 1.1E-09 2.4E-14 79.3 14.8 113 6-126 3-119 (150)
19 cd07825 SRPBCC_7 Ligand-bindin 99.2 1.9E-09 4.2E-14 77.4 15.1 136 7-149 2-143 (144)
20 PF03364 Polyketide_cyc: Polyk 99.2 2.6E-09 5.6E-14 75.6 14.4 110 13-134 1-113 (130)
21 cd07817 SRPBCC_8 Ligand-bindin 99.1 8.1E-09 1.8E-13 73.3 14.4 106 6-126 1-108 (139)
22 PRK10724 hypothetical protein; 99.1 7.9E-09 1.7E-13 77.0 13.5 110 6-126 16-126 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 99.0 2.4E-08 5.3E-13 72.5 14.2 112 8-126 2-116 (146)
24 COG5637 Predicted integral mem 98.6 3.7E-07 7.9E-12 69.0 10.0 112 1-126 66-179 (217)
25 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 8.8E-06 1.9E-10 58.7 17.0 137 7-149 2-141 (143)
26 cd08898 SRPBCC_CalC_Aha1-like_ 98.6 2.2E-06 4.7E-11 61.3 13.7 135 6-150 2-144 (145)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.6 1.7E-06 3.7E-11 63.7 13.0 126 5-150 11-136 (157)
28 COG3427 Carbon monoxide dehydr 98.6 8.9E-07 1.9E-11 65.0 11.2 111 7-125 3-114 (146)
29 cd08897 SRPBCC_CalC_Aha1-like_ 98.6 4.7E-06 1E-10 59.5 14.3 128 6-150 1-132 (133)
30 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 3.9E-06 8.5E-11 59.2 13.7 132 6-149 1-134 (136)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.6 1.4E-05 2.9E-10 58.0 16.4 133 6-149 1-144 (146)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 1.4E-05 3.1E-10 57.9 16.2 134 7-150 2-145 (146)
33 cd07826 SRPBCC_CalC_Aha1-like_ 98.5 5.6E-06 1.2E-10 59.9 13.0 137 7-150 2-141 (142)
34 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 1.5E-05 3.2E-10 57.4 12.9 133 7-149 2-137 (139)
35 PF06240 COXG: Carbon monoxide 98.4 1.1E-05 2.3E-10 58.6 12.0 107 10-126 2-111 (140)
36 COG2867 Oligoketide cyclase/li 98.1 2E-05 4.4E-10 57.6 8.3 111 6-126 3-114 (146)
37 cd08891 SRPBCC_CalC Ligand-bin 98.1 0.00014 3.1E-09 52.8 12.8 131 7-149 2-147 (149)
38 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00026 5.7E-09 50.2 13.5 121 7-149 2-124 (126)
39 cd08876 START_1 Uncharacterize 98.0 0.002 4.3E-08 48.7 17.1 119 5-126 41-169 (195)
40 PF08327 AHSA1: Activator of H 97.9 0.0011 2.5E-08 45.8 13.7 122 14-149 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.9 0.0003 6.5E-09 50.4 10.6 97 7-120 2-99 (136)
42 COG3832 Uncharacterized conser 97.7 0.0032 6.8E-08 46.2 14.3 138 2-150 5-148 (149)
43 PTZ00220 Activator of HSP-90 A 97.1 0.011 2.4E-07 42.3 10.4 118 13-149 1-126 (132)
44 cd08863 SRPBCC_DUF1857 DUF1857 97.0 0.072 1.6E-06 39.0 14.5 118 8-144 3-130 (141)
45 PF08982 DUF1857: Domain of un 96.7 0.14 3E-06 37.8 13.5 70 7-86 2-79 (149)
46 COG4276 Uncharacterized conser 96.6 0.12 2.7E-06 37.6 12.2 114 5-126 2-120 (153)
47 PF10698 DUF2505: Protein of u 95.9 0.19 4E-06 37.1 10.6 111 7-126 1-130 (159)
48 cd08874 START_STARD9-like C-te 95.5 0.86 1.9E-05 35.3 16.2 121 7-130 47-182 (205)
49 cd08873 START_STARD14_15-like 95.1 1.4 2.9E-05 35.0 17.1 143 7-152 79-235 (235)
50 cd08905 START_STARD1-like Chol 92.7 3.7 7.9E-05 31.6 13.8 119 7-126 51-181 (209)
51 cd08877 START_2 Uncharacterize 92.6 3.8 8.2E-05 31.4 13.9 137 6-148 47-211 (215)
52 cd08913 START_STARD14-like Lip 91.2 6.4 0.00014 31.3 14.4 114 7-123 83-209 (240)
53 cd08914 START_STARD15-like Lip 90.1 8.2 0.00018 30.6 14.6 114 6-123 79-205 (236)
54 cd08906 START_STARD3-like Chol 88.3 10 0.00022 29.3 16.1 40 6-47 50-90 (209)
55 cd00177 START Lipid-binding ST 86.3 11 0.00023 27.4 16.9 116 7-126 41-167 (193)
56 cd08870 START_STARD2_7-like Li 85.7 14 0.0003 28.2 15.1 136 7-149 52-206 (209)
57 cd08868 START_STARD1_3_like Ch 84.7 15 0.00033 27.9 16.3 141 7-150 50-206 (208)
58 cd08903 START_STARD5-like Lipi 84.5 16 0.00035 28.0 15.6 117 7-126 48-180 (208)
59 KOG3177 Oligoketide cyclase/li 80.9 15 0.00033 28.8 8.1 105 12-125 75-182 (227)
60 cd08872 START_STARD11-like Cer 77.2 34 0.00073 26.9 12.8 140 7-152 54-227 (235)
61 cd08911 START_STARD7-like Lipi 77.1 30 0.00066 26.4 16.0 115 7-124 47-177 (207)
62 cd08869 START_RhoGAP C-termina 55.8 87 0.0019 23.6 15.2 116 7-127 46-171 (197)
63 cd08871 START_STARD10-like Lip 51.8 1.1E+02 0.0023 23.4 16.1 115 8-126 50-175 (222)
64 PF11687 DUF3284: Domain of un 46.4 99 0.0021 21.6 11.8 96 9-125 3-104 (120)
65 cd00222 CollagenBindB Collagen 44.5 41 0.00088 25.7 4.1 76 14-99 4-79 (187)
66 cd08904 START_STARD6-like Lipi 41.7 50 0.0011 25.4 4.2 113 8-126 49-178 (204)
67 smart00234 START in StAR and p 39.6 1.5E+02 0.0033 21.8 17.3 119 6-126 46-175 (206)
68 PF02087 Nitrophorin: Nitropho 38.0 1.8E+02 0.0038 22.1 6.4 29 62-94 46-74 (178)
69 cd08867 START_STARD4_5_6-like 37.8 1.7E+02 0.0038 21.9 15.7 41 7-48 48-89 (206)
70 cd08910 START_STARD2-like Lipi 33.8 2.1E+02 0.0046 21.7 13.9 113 7-126 51-179 (207)
71 TIGR02777 LigD_PE_dom DNA liga 33.8 73 0.0016 23.7 3.8 59 53-125 50-110 (156)
72 KOG3294 WW domain binding prot 33.4 1.2E+02 0.0025 24.4 5.1 49 90-147 85-134 (261)
73 cd05703 S1_Rrp5_repeat_hs12_sc 33.3 1.1E+02 0.0023 19.2 4.2 20 69-88 52-71 (73)
74 PF11485 DUF3211: Protein of u 30.7 2.1E+02 0.0046 20.8 11.2 99 6-123 2-102 (136)
75 PF08868 YugN: YugN-like famil 28.1 49 0.0011 24.0 2.1 28 122-149 104-131 (132)
76 PF02115 Rho_GDI: RHO protein 25.1 3.3E+02 0.0071 21.1 9.9 58 63-122 135-196 (200)
77 PF02922 CBM_48: Carbohydrate- 24.9 1.8E+02 0.004 18.1 6.0 58 30-92 14-74 (85)
78 PF08473 VGCC_alpha2: Neuronal 23.4 1.2E+02 0.0026 20.6 3.1 17 76-92 38-54 (94)
79 COG4933 Uncharacterized conser 23.4 99 0.0022 22.1 2.8 25 1-25 43-67 (124)
80 cd05697 S1_Rrp5_repeat_hs5 S1_ 22.6 1.8E+02 0.0039 17.5 3.8 19 69-87 50-68 (69)
81 KOG0301 Phospholipase A2-activ 21.2 4E+02 0.0087 24.8 6.8 68 11-87 153-226 (745)
82 PF00028 Cadherin: Cadherin do 20.9 2.3E+02 0.005 17.8 4.9 12 98-109 65-76 (93)
83 PF07615 Ykof: YKOF-related Fa 20.9 1.4E+02 0.0031 19.4 3.1 39 9-47 39-77 (81)
84 cd05696 S1_Rrp5_repeat_hs4 S1_ 20.8 2E+02 0.0043 17.7 3.7 19 69-87 52-70 (71)
85 cd05695 S1_Rrp5_repeat_hs3 S1_ 20.6 1.7E+02 0.0036 17.8 3.3 22 60-85 43-64 (66)
86 cd08908 START_STARD12-like C-t 20.3 4.1E+02 0.0088 20.4 13.9 115 6-127 53-178 (204)
87 PF10313 DUF2415: Uncharacteri 20.3 1.6E+02 0.0034 17.0 2.8 12 53-64 1-12 (43)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.7e-44 Score=267.09 Aligned_cols=150 Identities=36% Similarity=0.584 Sum_probs=139.0
Q ss_pred cceeeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCC
Q 031759 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYEN 81 (153)
Q Consensus 2 ~~~g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~ 81 (153)
++.++++.|+++++||+++|++++...+.+|+++|+.|+||+++||||+..||||.|+|.++++.. .+|||++++|+++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~-~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFK-YVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEE-EEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcc-eeEEEEEeecCCC
Confidence 468999999999999999999999756669999999999999999999545599999999999988 9999999999999
Q ss_pred CEEEEEEEeccccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhccC
Q 031759 82 NKITFKVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 152 (153)
Q Consensus 82 ~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~~~ 152 (153)
|+++|++|||+++..|++|..++++.|+++ ||+++|+++||+.+++.|+|+.+++++..|+|+||+|||+|
T Consensus 80 ~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999888999999999999864 69999999999999999899999999999999999999987
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.6e-37 Score=227.65 Aligned_cols=144 Identities=31% Similarity=0.461 Sum_probs=131.9
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcc-ccc-ccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCC
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLH-HVS-SACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENN 82 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~-~lp-k~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~ 82 (153)
|+++.+++|+||||+||++++ ++. .+| .|+| .|++|++++|++ ++||||.|+|.+|++.. ++||||+++|+++|
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~-~~GsvR~~~~~~~~~~~-~~kE~l~~~D~~~~ 76 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDG-GPGSIKLITFGPGGKVK-YVKERIDAVDEENK 76 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCC-CCceEEEEEEcCCCcce-EEEEEEEEEccccc
Confidence 689999999999999999998 666 455 5667 899999999994 99999999999888777 99999999999999
Q ss_pred EEEEEEEecccc-CceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhccC
Q 031759 83 KITFKVIEGNLL-DQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLIPQ 152 (153)
Q Consensus 83 ~~~y~v~eG~~~-~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~~~ 152 (153)
+++|++++|+++ .+|++|+++++|.|.+ ++|+++|+++|++.++++++|+.+++++..+++++++|++.+
T Consensus 77 ~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 77 TYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999988 4899999999999984 589999999999999999999999999999999999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.75 E-value=1.7e-16 Score=112.61 Aligned_cols=134 Identities=24% Similarity=0.420 Sum_probs=107.8
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
.++.+++|++|+++||+++. |+.++++|+|. +++++++++.+ ++|+++.+.+..+. .+++++..+|+.++++.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~-d~~~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g~----~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLS-DFGGLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDGG----TVRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHh-CcCchhhhccC-cceEEeecCCC-CCCeEEEEEeCCCC----EEEEEehhcCccCCEEE
Confidence 57889999999999999998 89999999995 88999987754 68999999997654 88999999998888999
Q ss_pred EEEEeccccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCCh---hHHHHHHHHHHHHHHhhh
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEP---AAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~~~~~p---~~~~~~~~~~~k~ie~~l 149 (153)
|++.+|+. .+.++..++++.|.++ +|.++|+.+|++... .+.+ ..+.+.....++.|.++|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998854 3566778999999865 899999999999866 3333 222444455566666654
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.65 E-value=1.1e-13 Score=98.17 Aligned_cols=107 Identities=28% Similarity=0.463 Sum_probs=87.3
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEE
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
.+++.++.|++|+++||+++. |+.++++|+| .+.++++++++ ++|..+.++.. +. . .+++++..+|++++.+
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~-d~~~~~~w~~-~~~~~~~~~~~--~~~~~~~~~~~--g~-~-~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLS-DPENWPRWWP-GVKSVELLSGG--GPGTERTVRVA--GR-G-TVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHT-TTTGGGGTST-TEEEEEEEEEC--STEEEEEEEEC--SC-S-EEEEEEEEEETTTTEE
T ss_pred EEEEEEEEECCCHHHHHHHHh-Chhhhhhhhh-ceEEEEEcccc--ccceeEEEEec--cc-c-ceeEEEEEecCCCcEE
Confidence 478999999999999999997 8999999999 48899988744 34555565543 32 3 8999999999889999
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEc
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 123 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~ 123 (153)
.|++. .. ++..+..++++.|.++||.++|+.+|+.
T Consensus 74 ~~~~~--~~--~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV--PS--GFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEE--SS--SSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred EEEEE--ec--ceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 99996 11 2455678999999988899999999997
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.61 E-value=7.8e-14 Score=100.43 Aligned_cols=109 Identities=20% Similarity=0.338 Sum_probs=82.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCC-----CcEEEEEeeCCCceeeEEEEEEEEEeCCC
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKA-----GSVIFGRYANEGKSDLSCKVIMEEIDYEN 81 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~-----Gsir~~~~~~~~~~~~~~kErl~~~D~~~ 81 (153)
++.++.|++|+++||+++. |+.++|+|+|. +++++++++.++.. |..+.+.....+ .+..++.+.++.+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~-D~~~~~~w~p~-v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~ 74 (144)
T cd08866 1 VVARVRVPAPPETVWAVLT-DYDNLAEFIPN-LAESRLLERNGNRVVLEQTGKQGILFFKFEA----RVVLELREREEFP 74 (144)
T ss_pred CeEEEEECCCHHHHHHHHh-ChhhHHhhCcC-ceEEEEEEcCCCEEEEEEeeeEEEEeeeeeE----EEEEEEEEecCCC
Confidence 3578999999999999997 89999999995 99999987643211 111111111112 5566677777778
Q ss_pred CEEEEEEEeccccCceeEEEEEEEEEecCC--CeEEEEEEEEEcCC
Q 031759 82 NKITFKVIEGNLLDQYKSFCCFFQVTPKGE--GSFVTWTLKYEKPN 125 (153)
Q Consensus 82 ~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~--gs~v~W~~~ye~~~ 125 (153)
+.+.|++++|++ +.|.+++++.|.++ +|.++|.++|++..
T Consensus 75 ~~i~~~~~~g~~----~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~ 116 (144)
T cd08866 75 RELDFEMVEGDF----KRFEGSWRLEPLADGGGTLLTYEVEVKPDF 116 (144)
T ss_pred ceEEEEEcCCch----hceEEEEEEEECCCCCeEEEEEEEEEEeCC
Confidence 999999998864 67789999999854 79999999999875
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.56 E-value=1.5e-12 Score=92.60 Aligned_cols=113 Identities=23% Similarity=0.316 Sum_probs=82.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
+++.++.|++|+++||+++. |+.++|+|+|. +.++++++++.++.+....++...++-.. ...-+++ .++ .+.++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~-D~~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLA-DVEAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKD-TYALEYT-WDG-AGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHh-ChhhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEE-EEEEEEE-EcC-CCcEE
Confidence 68899999999999999997 89999999995 99999976543233334444554332111 2222322 223 67899
Q ss_pred EEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
|+..+|.. ...+..++++.|.++||.++|+.+++....
T Consensus 78 ~~~~~~~~---~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~ 115 (140)
T cd07819 78 WTLVEGEG---NRSQEGSYTLTPKGDGTRVTFDLTVELTVP 115 (140)
T ss_pred EEEecccc---eeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 99998763 466678999999988999999999998653
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=8.9e-13 Score=93.24 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=87.4
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF 86 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y 86 (153)
++.++.|++|+++||+++. |+.++++|.|. +.+++.+++...++|+...+....++... .+++++..+| .++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~-d~~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~-~~~~~v~~~~-p~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLA-DFENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRI-ELTYEITEYE-PGRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHH-CccchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceE-EEEEEEEEec-CCcEEEE
Confidence 4678999999999999997 89999999995 77888876544478998888776554334 6789999887 5688999
Q ss_pred EEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEc
Q 031759 87 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 123 (153)
Q Consensus 87 ~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~ 123 (153)
...+|++ .+..++++.|.++||.++|+.+|+.
T Consensus 77 ~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEP 108 (140)
T ss_pred EecCCCc-----ceEEEEEEEEcCCceEEEEEEEEcc
Confidence 9876643 2467899999888999999999997
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.40 E-value=2.1e-11 Score=87.46 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=82.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF 86 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y 86 (153)
+++++.|++|+++||+++. |+..+|+|+|. .+++.+++++ ....++.+....++... .. +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~-D~~~~p~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLA-DAERWPEFLPT--VHVERLELDG-GVERLRMWATAFDGSVH-TW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHH-hHHhhhccCCC--ceEEEEEEcC-CEEEEEEEEEcCCCcEE-EE-EEEEEEcCCCCEEEE
Confidence 4689999999999999997 89999999995 4556555432 11246656665333222 33 344567888999999
Q ss_pred EEEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 87 KVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 87 ~v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
..+++..+ +..+.+++++.|.+ ++|.|+|+.+|+....
T Consensus 75 ~~~~~~~~--~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPPP--VASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCCC--hhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 99874332 46667899999987 6899999999998854
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.38 E-value=1.3e-11 Score=88.55 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=84.7
Q ss_pred EEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEE
Q 031759 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFK 87 (153)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~ 87 (153)
+.++.|++|++.||+++. |..++|+|+|+ +++++++++++ .+....++....+... .+..++. +++ .+++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~-D~~~~~~~~p~-~~~~~vl~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVA-DVERYPEFLPW-CTASRVLERDE--DELEAELTVGFGGIRE-SFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred eEEEEcCCCHHHHHHHHH-HHHhhhhhcCC-ccccEEEEcCC--CEEEEEEEEeeccccE-EEEEEEE-ecC-CCEEEEE
Confidence 678999999999999997 89999999995 99999998764 3344455555444333 5556655 665 7789999
Q ss_pred EEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 88 VIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 88 v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
.++|++ +.+.+++++.|.+ ++|.|+|..+|++.+.
T Consensus 75 ~~~g~~----~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~ 110 (138)
T cd07813 75 LVDGPF----KHLEGEWRFKPLGENACKVEFDLEFEFKSR 110 (138)
T ss_pred ecCCCh----hhceeEEEEEECCCCCEEEEEEEEEEECCH
Confidence 998854 5667899999986 6899999999999853
No 10
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=5.9e-11 Score=81.85 Aligned_cols=112 Identities=25% Similarity=0.384 Sum_probs=89.5
Q ss_pred EEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEE
Q 031759 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFK 87 (153)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~ 87 (153)
+.++.|++|+++||+++. |+.++++|.|. +.++++.++.....|....+.+. ++... ..+.++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLS-DPERWPEWSPG-LERVEVLGGGEGGVGARFVGGRK-GGRRL-TLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHh-ChhhhhhhCcc-cceEEEcCCCCccceeEEEEEec-CCccc-cceEEEEEecC-CCceEEE
Confidence 578899999999999997 89999999995 88888877654466777666665 22233 67888888877 7789999
Q ss_pred EEeccccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCC
Q 031759 88 VIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNEN 127 (153)
Q Consensus 88 v~eG~~~~~y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~~ 127 (153)
...++.. ..+..++++.+.++ +|.++|+.+++.....
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 77 VTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 9887753 45678999999877 9999999999988654
No 11
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=3e-11 Score=86.97 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=87.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCC-c-CCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGE-W-GKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGd-g-~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
++.++.|++|+++||+.+. |..++|+|+|+ +.++++++.+ + ..+|+.-.+.+...+... .++-++..++ .++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~-d~~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~-p~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHS-RPDNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVE-PPRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHc-CcchHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEc-CCCeE
Confidence 4688999999999999997 89999999996 8899997533 2 156888888887665334 6777777765 45679
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcC
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKP 124 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~ 124 (153)
++....|++ .++..++.+.|.++||.+++.++|+..
T Consensus 77 ~~~~~~G~~----~~w~h~~~f~~~~~gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGPF----RSWRHTHRFEAIGGGTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCCc----hhCEEEEEEEECCCceEEEEEEEEeCC
Confidence 999888764 455668888888779999999999984
No 12
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.33 E-value=1.6e-10 Score=84.90 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=83.9
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEE
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
|..+++|+|++||++||+++. |..+.|.|.|. +.++++++.++.+.|+--++.+..+|... .+.-|. ..|...+++
T Consensus 1 ~~~~~si~i~a~~~~v~~lva-Dv~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~-~w~s~~-~~~~~~~~i 76 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTN-DIATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVW-SWVSER-TLDPVNRTV 76 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHH-hhhhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEE-EEEEEE-EecCCCcEE
Confidence 456899999999999999997 89999999995 88999988654455532222332244333 443332 278888888
Q ss_pred EEE-EEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCC
Q 031759 85 TFK-VIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNEN 127 (153)
Q Consensus 85 ~y~-v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~ 127 (153)
.+. ..+|+ +.+...+++|.|.++||.|++..+|+-.+..
T Consensus 77 ~~~~~~~~p----~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 77 RARRVETGP----FAYMNIRWEYTEVPEGTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEecCCC----cceeeeeEEEEECCCCEEEEEEEEEEECCCC
Confidence 874 33332 5677889999998778999999999976543
No 13
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.32 E-value=3e-10 Score=80.59 Aligned_cols=106 Identities=19% Similarity=0.121 Sum_probs=79.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
+++.++.|+||+++||+++. |+.++|+|+|+ ++++++.++.+ ++|+...++...+. .+..++.++++ .+.++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~~~~-~~G~~~~~~~~~~~----~~~~~i~~~~p-~~~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLT-DVENWPAWTPS-VETVRLEGPPP-AVGSSFKMKPPGLV----RSTFTVTELRP-GHSFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hhhhcccccCc-ceEEEEecCCC-CCCcEEEEecCCCC----ceEEEEEEecC-CCEEE
Confidence 57889999999999999997 89999999995 88999876543 67776665544322 66778888875 45688
Q ss_pred EEEEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcC
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKP 124 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~ 124 (153)
++.... . ..+..++++.+.+ ++|.++|+.+|...
T Consensus 74 ~~~~~~-~----~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 74 WTGPAP-G----ISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EEecCC-C----EEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 875432 1 2335688888876 68999999988754
No 14
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=8.7e-10 Score=80.12 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=80.1
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEe-CCcCCCCcEEEEEeeC-CCceeeEEEEEEEEEeCCCCEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLE-GEWGKAGSVIFGRYAN-EGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~e-Gdg~~~Gsir~~~~~~-~~~~~~~~kErl~~~D~~~~~~ 84 (153)
+..+..|++|+++||+++. |+..+|+|+|. ++++++++ |++.++|+.-+.+... .+... .+.-++..+ +..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~t-D~~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLV-DAESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRL-RFELRVTRI-EPLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHh-Chhhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEE-EEEEEEEee-cCCcEE
Confidence 4678889999999999997 89999999995 89999887 3434677765544332 22122 455565554 456788
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 125 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~ 125 (153)
+|.. +|++. . ..++++.|.++||.|+++.+++..+
T Consensus 79 ~~~~-~g~~~----~-~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDLE----G-VGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEeee----E-EEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 8884 67642 1 4788999987899999999999865
No 15
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=1.1e-09 Score=77.44 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC-CceeeEEEEEEEEEeCCCCEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE-GKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~-~~~~~~~kErl~~~D~~~~~~ 84 (153)
.++.++.|++|+++||+++. |+.++|+|+|. +..++... . .+|+...+.+..+ +... ...+++.++|+ .+++
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~-d~~~~~~w~~~-~~~~~~~~--~-~~G~~~~~~~~~~~~~~~-~~~~~v~~~~p-~~~~ 73 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLT-DFPSYPEWNPF-VRSATGLS--L-ALGARLRFVVKLPGGPPR-SFKPRVTEVEP-PRRL 73 (141)
T ss_pred CeEEEEEecCCHHHHHHHHh-ccccccccChh-heeEeccc--c-CCCCEEEEEEeCCCCCcE-EEEEEEEEEcC-CCEe
Confidence 36889999999999999997 89999999995 66665421 2 5788777777543 2334 77888898876 5688
Q ss_pred EEEEEeccccCceeEEEEEEEEEec-CCCeEEEEEEEEEc
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPK-GEGSFVTWTLKYEK 123 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~-~~gs~v~W~~~ye~ 123 (153)
.|+...++.. .-....++++.|. +++|.++|+..|..
T Consensus 74 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 74 AWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred EEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 9998776532 1234568899997 56899999987764
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.25 E-value=4.8e-10 Score=79.54 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=80.2
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF 86 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y 86 (153)
++.++.|+||+++||+++. |+.++|+|+|. +..++ ++...-|+.+.+....++... .+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~-d~~~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~~~-~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRALT-DPELLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGEEG-WVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHcC-CHHHHHhhhCc-CCceE---EcccCCceEEEEEECCCCCEE-eccEEEEEEcCC-CeEEE
Confidence 6789999999999999997 89999999995 22222 222112677765554434344 788899988755 78999
Q ss_pred EEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 031759 87 KVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 125 (153)
Q Consensus 87 ~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~ 125 (153)
+...++.+. .-....++++.|.+++|.++|+.+|....
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~T~v~~~~~~~~~~ 112 (139)
T cd07814 75 TWAFSDETP-GPETTVTVTLEETGGGTRLTLTHSGFPEE 112 (139)
T ss_pred EecccCCCC-CCceEEEEEEEECCCCEEEEEEEEccChH
Confidence 988765310 12235688888988889999999998864
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.24 E-value=5.5e-10 Score=79.68 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=76.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCC--ceeeEEEEEEEEEeCCCCE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEG--KSDLSCKVIMEEIDYENNK 83 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~--~~~~~~kErl~~~D~~~~~ 83 (153)
+++.++.|++|+++||+++. |+.++++|+|+ +++++.++++. .. -.+++..++ ... ..+-++..+|+ +++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~-D~~~~~~w~p~-~~~~~~~~~~~--~~--~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 73 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALN-DPEVLARCIPG-CESLEKIGPNE--YE--ATVKLKVGPVKGTF-KGKVELSDLDP-PES 73 (144)
T ss_pred eeeeEEEecCCHHHHHHHhc-CHHHHHhhccc-hhhccccCCCe--EE--EEEEEEEccEEEEE-EEEEEEEecCC-CcE
Confidence 47889999999999999997 89999999995 88888765321 11 112222221 111 23455555544 356
Q ss_pred EEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 84 ITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 84 ~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
+.++....+. .....+..++++.|.++||.++|+++|+..+.
T Consensus 74 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 74 YTITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence 7777654222 12456788999999877899999999997654
No 18
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.21 E-value=1.1e-09 Score=79.27 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=81.0
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeE---EEEEe-CCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCC
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQS---VDLLE-GEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYEN 81 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s---~~~~e-Gdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~ 81 (153)
+++.++.|++|+++||+++. |+.++|+|+|. ... ++... +...++|+...++...+ .. ....++..++ .+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~-D~~~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~-~~~~~v~~~~-p~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVN-DLKNWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDK--VG-EGEMEITESV-PN 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHh-CcccCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCc--cc-ceEEEEEecC-CC
Confidence 68899999999999999997 89999999994 433 22211 22226788877766542 11 3345666665 46
Q ss_pred CEEEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 82 NKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 82 ~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
+++.|+...++.+. .....++++.|.++||.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCch
Confidence 77999988543321 24468999999988999999999987654
No 19
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.19 E-value=1.9e-09 Score=77.37 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=89.7
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCc-CCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEW-GKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg-~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
++.++.|+||+++||+++. |+.++|+|.|... ......++. -++|+...+.....+... .+..++..+++ ++.++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~-d~~~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~-~~~~~v~~~~p-~~~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLA-DPRRHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPY-RITNHVVAFEE-NRLIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHh-CccccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCce-EEEEEEEEECC-CCEEE
Confidence 6889999999999999997 8999999998422 222223432 278988888776433333 56677887766 55588
Q ss_pred EEEE-eccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCC--CC-ChhHHHHHHHHHHHHHHhhh
Q 031759 86 FKVI-EGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN--VP-EPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 86 y~v~-eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~--~~-~p~~~~~~~~~~~k~ie~~l 149 (153)
|+.. .+... .....++++.|.+ ++|.++++..|...+.. .+ ............+..|++|+
T Consensus 78 ~~~~~~~~~~---~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQEP---GGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCCCC---CceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8854 22221 1234578888876 57999999988866431 11 12223445566677777765
No 20
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.17 E-value=2.6e-09 Score=75.55 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=80.5
Q ss_pred eCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEEEEecc
Q 031759 13 IKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIEGN 92 (153)
Q Consensus 13 i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~v~eG~ 92 (153)
|++|+++||+++. |..++|.|+|. ++++++++.+++ +..-.+....++... .+..++... ...+ +.+..++|+
T Consensus 1 V~ap~~~V~~~i~-D~e~~~~~~p~-~~~v~vl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~g~ 73 (130)
T PF03364_consen 1 VNAPPEEVWSVIT-DYENYPRFFPP-VKEVRVLERDGD--GMRARWEVKFGGIKR-SWTSRVTED-PPER-IRFEQISGP 73 (130)
T ss_dssp ESS-HHHHHHHHT-TGGGHHHHCTT-EEEEEEEEEECC--EEEEEEEECTTTTCE-EEEEEEEEE-CTTT-EEEESSETT
T ss_pred CCCCHHHHHHHHH-HHHHHHHhCCC-CceEEEEEeCCC--eEEEEEEEecCCEEE-EEEEEEEEE-Eeee-eeeeecCCC
Confidence 6899999999997 89999999995 999999987652 323355666555444 667776644 4444 888888886
Q ss_pred ccCceeEEEEEEEEEecCC---CeEEEEEEEEEcCCCCCCChhHH
Q 031759 93 LLDQYKSFCCFFQVTPKGE---GSFVTWTLKYEKPNENVPEPAAM 134 (153)
Q Consensus 93 ~~~~y~~~~~t~~v~p~~~---gs~v~W~~~ye~~~~~~~~p~~~ 134 (153)
+ +++..++++.|.++ ||.++++.+|+..... +.|..+
T Consensus 74 ~----~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~~~~ 113 (130)
T PF03364_consen 74 F----KSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPG-PLPGFL 113 (130)
T ss_dssp E----EEEEEEEEEEEETTECCEEEEEEEEEEEEETSS-SSHHHH
T ss_pred c----hhcEEEEEEEECCCCcCCCEEEEEEEEEEecCc-HhHHHH
Confidence 4 88999999999986 8888888888774332 345554
No 21
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=8.1e-09 Score=73.27 Aligned_cols=106 Identities=23% Similarity=0.359 Sum_probs=77.5
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC-CceeeEEEEEEEEEeCCCCEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE-GKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~-~~~~~~~kErl~~~D~~~~~~ 84 (153)
.++.++.|++|+++||+++. |+.++|+|.|. ++++++++|. +. .+++... |... .+..++..++ .++.+
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~-D~~~~~~w~~~-~~~~~~~~~~----~~--~~~~~~~~g~~~-~~~~~v~~~~-~~~~i 70 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWR-DFENLPRFMSH-VESVEQLDDT----RS--HWKAKGPAGLSV-EWDAEITEQV-PNERI 70 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHh-ChhhhHHHhhh-hcEEEEcCCC----ce--EEEEecCCCCcE-EEEEEEeccC-CCCEE
Confidence 36889999999999999997 89999999995 8899887542 22 2333222 4333 5666666544 45569
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 126 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~ 126 (153)
.|....|.. .+..++++.|.++ +|.+++++.|++...
T Consensus 71 ~~~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 71 AWRSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EEEECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 998776642 3457888988755 899999999998753
No 22
>PRK10724 hypothetical protein; Provisional
Probab=99.06 E-value=7.9e-09 Score=77.00 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=83.9
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
++..++.|++|++++|+++. |...+|+|+| ..+++++++-+++ +-+..++.+-+|-.. ....|.. +++ .+++.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~-Dve~yp~flp-~~~~s~vl~~~~~--~~~a~l~v~~~g~~~-~f~srv~-~~~-~~~I~ 88 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVN-DVQSYPQFLP-GCTGSRVLESTPG--QMTAAVDVSKAGISK-TFTTRNQ-LTS-NQSIL 88 (158)
T ss_pred eEEEEEEecCCHHHHHHHHH-HHHHHHHhCc-ccCeEEEEEecCC--EEEEEEEEeeCCccE-EEEEEEE-ecC-CCEEE
Confidence 67889999999999999997 8999999999 4888888875432 234444554444334 6666655 444 44899
Q ss_pred EEEEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
++.++|++ +++.+.+++.|.+ ++|.|++..+|+..+.
T Consensus 89 ~~~~~GpF----~~l~g~W~f~p~~~~~t~V~~~l~fef~s~ 126 (158)
T PRK10724 89 MQLVDGPF----KKLIGGWKFTPLSQEACRIEFHLDFEFTNK 126 (158)
T ss_pred EEecCCCh----hhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence 99999964 7778999999986 5799999999996643
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.01 E-value=2.4e-08 Score=72.46 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=73.3
Q ss_pred EEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEE--EEEEEEEeCCCCEEE
Q 031759 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSC--KVIMEEIDYENNKIT 85 (153)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~--kErl~~~D~~~~~~~ 85 (153)
+.+++|++|++++|+++. |+..++.|+|+ +++++..+++ ...-.++...++-.. .+ +=++..++++.+++.
T Consensus 2 ~~~~~v~a~pe~vw~~l~-D~~~~~~~~pg-~~~~~~~~~~----~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLL-DIERVAPCLPG-ASLTEVEGDD----EYKGTVKVKLGPISA-SFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhc-CHHHHHhcCCC-ceeccccCCC----eEEEEEEEEEccEEE-EEEEEEEEEeccCCCcEEE
Confidence 568899999999999997 89999999995 8887764322 122233443332111 22 224555555788888
Q ss_pred EEEEecccc-CceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 86 FKVIEGNLL-DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 86 y~v~eG~~~-~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
++.-..+.. ..--....++++.|.++||.++|.++++..+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeE
Confidence 775431111 11113466888888667899999999986654
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.65 E-value=3.7e-07 Score=68.99 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=87.5
Q ss_pred CcceeeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC-CCceeeEEEEEEEEEeC
Q 031759 1 MSLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN-EGKSDLSCKVIMEEIDY 79 (153)
Q Consensus 1 m~~~g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~-~~~~~~~~kErl~~~D~ 79 (153)
|+-.-.++++++|+.|++.||..++ |+.++|.||-+ +.||++.+-. + .+|+... ++... .++-+|. -|.
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~-dLe~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g~~v-~Wea~it-~d~ 135 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWR-DLENLPLWMKH-LDSVKVLDDK---R---SRWKANAPLGLEV-EWEAEIT-KDI 135 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHH-hhhhhhHHHHh-hceeeccCCC---c---cceeEcCCCCceE-EEeehhh-ccC
Confidence 4556688999999999999999998 89999999995 9999998653 1 4566643 44444 6777766 589
Q ss_pred CCCEEEEEEEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 80 ENNKITFKVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 80 ~~~~~~y~v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
.+..|.+.=++|.-..+ ++.++|.+.. +.|.|+.+..|-+.+.
T Consensus 136 ~~e~I~W~Sl~Ga~v~N----sG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 136 PGERIQWESLPGARVEN----SGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CCcEEeeecCCCCcCCC----CccEEeeeCCCCceEEEEEEEecCCcc
Confidence 99999999999954333 2577888774 4689999999988764
No 25
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.64 E-value=8.8e-06 Score=58.74 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=81.7
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCC-CeeEEEEEeCCcCCCCcEEEEEee-CCCceeeEEEEEEEEEeCCCC-E
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPD-KVQSVDLLEGEWGKAGSVIFGRYA-NEGKSDLSCKVIMEEIDYENN-K 83 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~-~v~s~~~~eGdg~~~Gsir~~~~~-~~~~~~~~~kErl~~~D~~~~-~ 83 (153)
++.+..+++|+++||+++- +...+.+|+.. .--.+...+.|. .+|..-.+.+. .++... ...-++.++|+.++ .
T Consensus 2 ~~i~r~~~ap~e~Vw~a~t-dp~~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~-~~~g~~~~~~p~~~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWS-DPAARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEI-TVEARYHDIVPDERIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhc-CHHHHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEE-eeeEEEEEecCCceEE
Confidence 4567779999999999997 78889999863 111233334443 44544444443 344444 55667788865444 3
Q ss_pred EEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhh
Q 031759 84 ITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 84 ~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l 149 (153)
+++..-.++....+. ..++.+.+.++||.++.+-.+-..++. ............++..|++||
T Consensus 79 ~t~~~~~~~~~~~~s--~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 79 YTYTMHIGGTLLSAS--LATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAEL 141 (143)
T ss_pred EEEeeccCCccccce--EEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHH
Confidence 344333333222222 368888898888998887665322221 112344555567778888876
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.64 E-value=2.2e-06 Score=61.26 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=78.4
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
.++.++.|+||+++||+++. ++..+++|.|... ....-|. |..-.+.+..+ ... ...-++..+ +.++.+.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~t-d~~~~~~W~~~~~--~~~~~~~----~~~g~~~~~~~-~~~-~~~~~i~~~-~p~~~l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRALT-DPEHFGQWFGVKL--GPFVVGE----GATGEITYPGY-EHG-VFPVTVVEV-DPPRRFS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHhc-ChhhhhhcccccC--CCcccCC----cceeEEecCCC-Ccc-ceEEEEEEe-CCCcEEE
Confidence 57899999999999999997 8899999999532 1111111 11123333321 111 445566666 4555666
Q ss_pred EEEEecc----cc-CceeEEEEEEEEEecCCCeEEEEEEE-EEcCCCCCC--ChhHHHHHHHHHHHHHHhhhc
Q 031759 86 FKVIEGN----LL-DQYKSFCCFFQVTPKGEGSFVTWTLK-YEKPNENVP--EPAAMLQLCVDVTKDVATKLI 150 (153)
Q Consensus 86 y~v~eG~----~~-~~y~~~~~t~~v~p~~~gs~v~W~~~-ye~~~~~~~--~p~~~~~~~~~~~k~ie~~l~ 150 (153)
|+...+. .. ..-.....++++.+.++||.++++-. |...+++.. ......+....++..|++||-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 7654322 11 01112347888999888999999865 433221110 112224455677778887763
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.62 E-value=1.7e-06 Score=63.75 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=81.1
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEE
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
-++..++.|++|+++||+++. |+..+++|.|. . .++. .+|....+.+...+ .. ....++.++|+. +.+
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~alt-dp~~~~~W~~~-~------~~~~-~~G~~~~~~~~~~~-~~-~~~~~v~e~~p~-~~l 78 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALT-DPERLARWFAP-G------TGDL-RVGGRVEFVMDDEE-GP-NATGTILACEPP-RLL 78 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHc-CHHHHHhhcCC-C------CCCc-ccCceEEEEecCCC-CC-ccceEEEEEcCC-cEE
Confidence 358889999999999999997 89999999993 2 2332 56665555554321 12 456677777554 677
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 150 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~ 150 (153)
.|+...++. .. ..+++|.+.++||.++.+.++.+... ......+....++..|.+|+-
T Consensus 79 ~~~~~~~~~---~~--~~~~~l~~~~~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e 136 (157)
T cd08899 79 AFTWGEGGG---ES--EVRFELAPEGDGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALE 136 (157)
T ss_pred EEEecCCCC---Cc--eEEEEEEEcCCCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHc
Confidence 777654442 11 35777888777899888877765431 122223444555566666553
No 28
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.62 E-value=8.9e-07 Score=65.01 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=79.7
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCC-ceeeEEEEEEEEEeCCCCEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEG-KSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~-~~~~~~kErl~~~D~~~~~~~ 85 (153)
++.+..|++|+++||+.+. |+..+...+|+ ++|++. +||. -.-.+.+..|. +..-..+=++..+|+..++|+
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~-dpe~~a~ciPG-~qs~e~-~g~e----~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~ 75 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLN-DPEQVAACIPG-VQSVET-NGDE----YTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSIT 75 (146)
T ss_pred ccceEEecCCHHHHHHHhc-CHHHHHhhcCC-cceeee-cCCe----EEEEEEEeecceeEEEEEEEEEccccCCCcEEE
Confidence 5678899999999999996 89999999996 999986 4542 12222233221 111034556666788999999
Q ss_pred EEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCC
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPN 125 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~ 125 (153)
...-.|.. ...-..++.+++.|.+++|.+.|.+.-+-.+
T Consensus 76 i~g~G~~~-~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg 114 (146)
T COG3427 76 INGSGGGA-AGFADGTVDVQLEPSGEGTRVNWFADANVGG 114 (146)
T ss_pred EEeecccc-cceeeeeeEEEEEEcCCCcEEEEEEEccccH
Confidence 88776433 3456667889999998889999999877664
No 29
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=4.7e-06 Score=59.51 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=79.8
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeE--EEEEeCCcCCCCcEEEEEee-CCCc-eeeEEEEEEEEEeCCC
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQS--VDLLEGEWGKAGSVIFGRYA-NEGK-SDLSCKVIMEEIDYEN 81 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s--~~~~eGdg~~~Gsir~~~~~-~~~~-~~~~~kErl~~~D~~~ 81 (153)
|++.++.++||+++||+++- +...+.+|++. ... +...+.|. .+|..-.+.+. .++. .. .+.-++.++ +..
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~t-d~e~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~-~~~g~~~ei-~p~ 75 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWT-TPEHITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMGF-DFEGTYTEV-EPH 75 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhC-CHHHHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCccc-ccceEEEEE-CCC
Confidence 57888999999999999997 78889999652 111 11123444 55655444432 2332 12 344566666 456
Q ss_pred CEEEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhhc
Q 031759 82 NKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKLI 150 (153)
Q Consensus 82 ~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~ 150 (153)
+++.|+..++ ...++++.|.++||.++-+ +...+. ...+...+....++..|++||-
T Consensus 76 ~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 76 KLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred CEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 6777775432 1368888898888988754 444322 1233445566777888888874
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.58 E-value=3.9e-06 Score=59.19 Aligned_cols=132 Identities=15% Similarity=0.091 Sum_probs=77.9
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
|++.++.|++|+++||+++- |+..+++|.+... .+++. .+|.--.+..... ... .+.-++.+++ .++.+.
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~t-d~~~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~-~~~-~~~~~v~~~~-~~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALT-DPEFTRQYWGGTT-----VESDW-KVGSAFEYRRGDD-GTV-DVEGEVLESD-PPRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHHc-Cchhhhheecccc-----cccCC-cCCCeEEEEeCCC-ccc-ccceEEEEec-CCCeEE
Confidence 57889999999999999997 8899999998521 13443 4454333444321 111 3455666675 556666
Q ss_pred EEEEecccc--CceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhh
Q 031759 86 FKVIEGNLL--DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 86 y~v~eG~~~--~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l 149 (153)
|+...++.+ ..-.....++.+.|.+++|.++.+.+-...+. .-.....+....+++.|.++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHh
Confidence 665432211 01112356788888877887766655432221 112333445566777777765
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.57 E-value=1.4e-05 Score=58.01 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=79.3
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCC-CeeEEEEEeCCcCCCCcEEEEEe--eC------CCceeeEEEEEEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPD-KVQSVDLLEGEWGKAGSVIFGRY--AN------EGKSDLSCKVIMEE 76 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~-~v~s~~~~eGdg~~~Gsir~~~~--~~------~~~~~~~~kErl~~ 76 (153)
+++.+..|+||+++||+++- +...+.+|.+. .+ .+...+.|. .+|-.-.+.+ .. ++... ...-++.+
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~t-d~~~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~~~~g~~~g~~~-~~~g~v~~ 76 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFL-DPDALAKWLPPDGM-TGTVHEFDA-REGGGFRMSLTYFDPSVGKTTGNTD-VFGGRFLE 76 (146)
T ss_pred CEEEEEEECCCHHHHHHHHc-CHHHHhhcCCCCCe-EeEEEEEec-ccCCeEEEEEEcCCccccccCCcEe-eeEEEEEE
Confidence 35678889999999999997 78889998762 22 222223332 3333323222 22 12222 44557788
Q ss_pred EeCCCCEEEEE--EEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHhhh
Q 031759 77 IDYENNKITFK--VIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 77 ~D~~~~~~~y~--v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l 149 (153)
+++.+ ++.|+ ..++... . ....++.+.+.+++|.++++...-+ .. .......+....++..|++||
T Consensus 77 v~p~~-~i~~~~~~~~~~~~-~--~~~v~~~~~~~~~~T~lt~~~~~~~--~~-~~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08895 77 LVPNE-RIVYTDVFDDPSLS-G--EMTMTWTLSPVSGGTDVTIVQSGIP--DG-IPPEDCELGWQESLANLAALV 144 (146)
T ss_pred EcCCC-EEEEEEEecCCCCC-c--eEEEEEEEEecCCCEEEEEEEeCCC--ch-hhhhHHHHHHHHHHHHHHHHh
Confidence 86655 45554 3222222 1 2257888888888899888876422 11 123444666677788888876
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.56 E-value=1.4e-05 Score=57.88 Aligned_cols=134 Identities=11% Similarity=0.039 Sum_probs=79.0
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCC-eeEEEEEeCCcCCCCcEEEEEe-eCCCceeeEEEEEEEEEeCCCC-E
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDK-VQSVDLLEGEWGKAGSVIFGRY-ANEGKSDLSCKVIMEEIDYENN-K 83 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~-v~s~~~~eGdg~~~Gsir~~~~-~~~~~~~~~~kErl~~~D~~~~-~ 83 (153)
+..+..|+||+++||+++- +...+.+|.+.. . ++...+.|. .+|..-.+.+ ..+|... ...-++.++|+.++ .
T Consensus 2 l~i~r~i~a~~e~Vw~a~t-~pe~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~g~v~~i~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWT-EPELLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEF-PNPGCFLEVVPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcC-CHHHHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEe-cceEEEEEEeCCCEEE
Confidence 4567889999999999997 788899997631 1 122223343 3444434444 3344333 44667888876655 4
Q ss_pred EEEEEEecccc--CceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHH-----HHHHHHHHHHHHhhhc
Q 031759 84 ITFKVIEGNLL--DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVATKLI 150 (153)
Q Consensus 84 ~~y~v~eG~~~--~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~~l~ 150 (153)
|++.+.++..+ ..+ -..++++.+.++||.++.+..+... ...+.. .+....++..|++||-
T Consensus 78 ~t~~~~~~~~~~~~~~--~~v~~~~~~~~~gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPF--MTAIITFEDEGGGTRYTARARHWTE----ADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCc--EEEEEEEEecCCcEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 55444333111 222 2468888898889998876544211 001111 2445777788888874
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.51 E-value=5.6e-06 Score=59.94 Aligned_cols=137 Identities=13% Similarity=0.007 Sum_probs=81.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEee-CCCceeeEEEEEEEEEeCCCC-EE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-NEGKSDLSCKVIMEEIDYENN-KI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~-~~~~~~~~~kErl~~~D~~~~-~~ 84 (153)
++.+..+++|+++||+++- +...+.+|....--.+...+.|. .+|..-.+.+. .+|... .+.-++.++++.++ .+
T Consensus 2 l~i~r~~~ap~e~Vw~a~T-dpe~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~-~~~g~~~ei~p~~~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHT-DPELVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEM-GFHGVYHEVTPPERIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhC-CHHHHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEe-cceEEEEEEcCCCEEEE
Confidence 5667889999999999997 78889999874322333445554 55554444443 344333 45567777866544 44
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCC-CChhHHHHHHHHHHHHHHhhhc
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENV-PEPAAMLQLCVDVTKDVATKLI 150 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~~l~ 150 (153)
++..-+.+ ... ...++++.+.++||.++.+..|....... ..-....+.....+..|++||.
T Consensus 79 t~~~~~~~--~~~--s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP--DGV--ALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC--CCc--eEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44443222 122 24688888888899998876653210000 0011223455667788888875
No 34
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=1.5e-05 Score=57.35 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=75.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCC-CCeeEEEEEeCCcCCCCcEEEEEe-eCCCceeeEEEEEEEEEeCCCCEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACP-DKVQSVDLLEGEWGKAGSVIFGRY-ANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P-~~v~s~~~~eGdg~~~Gsir~~~~-~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
++.+..|++|+++||+++- +...+.+|.+ ..+. +...+.|. .+|..-.+.+ ..+|... ...-++.++++ ++++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t-~p~~l~~W~~p~~~~-~~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~g~v~e~~p-~~~l 76 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWT-DPEHLAQWWGPEGFT-NTTHEFDL-RPGGRWRFVMHGPDGTDY-PNRIVFLEIEP-PERI 76 (139)
T ss_pred EEEEEEeCCCHHHHHHHhC-CHHHHhhccCcCCCc-ceEEEEEe-cCCCEEEEEEECCCCCEe-cceEEEEEEcC-CCEE
Confidence 5678889999999999997 7888999874 3232 12223333 3444333333 3334322 33457777854 5566
Q ss_pred EEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCC-CChhHHHHHHHHHHHHHHhhh
Q 031759 85 TFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENV-PEPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 85 ~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~~l 149 (153)
.|+.-.++. . ...++++.|.++||.++.+-.|.....-. .......+....++..|++||
T Consensus 77 ~~t~~~~~~---~--~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 77 VYDHGSGPP---R--FRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEEeccCCC---c--EEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 666543321 2 24688888888889988886542110000 000011233456677777776
No 35
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.39 E-value=1.1e-05 Score=58.57 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=66.0
Q ss_pred EEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCC-ceeeEEEEEEEEEeCCCCE-EEEE
Q 031759 10 GVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEG-KSDLSCKVIMEEIDYENNK-ITFK 87 (153)
Q Consensus 10 ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~-~~~~~~kErl~~~D~~~~~-~~y~ 87 (153)
+++|++|+++||+++. |...+.+-+|+ +++.+.++ +. -.+ .++...|. +..-..+=++..+|+.++. +..+
T Consensus 2 s~~v~a~~~~vw~~l~-D~~~l~~ciPG-~~~~e~~~-~~-~~~---~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLS-DPENLARCIPG-VESIEKVG-DE-YKG---KVKVKVGPIKGTFDGEVRITEIDPPESYTLEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT--HHHHHHHSTT-EEEEEEEC-TE-EEE---EEEEESCCCEEEEEEEEEEEEEETTTEEEEEEE
T ss_pred cEEecCCHHHHHHHhc-CHHHHHhhCCC-cEEeeecC-cE-EEE---EEEEEeccEEEEEEEEEEEEEcCCCcceEeeee
Confidence 6789999999999997 89999999996 99998875 31 111 22233332 1110344556667777765 4444
Q ss_pred EEeccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 88 VIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 88 v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
.-+.. .. .+..+.+++...+ ++|.+.|+++++-.+.
T Consensus 75 g~g~~--~~-~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 75 GRGRG--GG-SSASANITLSLEDDGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEECT--CC-EEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred ccCCc--cc-eEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence 33322 22 3344566665543 3599999999997754
No 36
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.12 E-value=2e-05 Score=57.65 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
+++++.-+.-+|+++|+++. |...+|+.+| .-...++.+.++.. -+=.++.+-.+-.. +..-|.. .++..++|.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~-dV~~YP~FlP-~C~~s~v~~~~~~~--l~A~l~V~~k~i~e-~F~Trv~-~~~~~~~I~ 76 (146)
T COG2867 3 QIERTALVPYSASQMFDLVN-DVESYPEFLP-WCSASRVLERNERE--LIAELDVGFKGIRE-TFTTRVT-LKPTARSID 76 (146)
T ss_pred eeEeeeeccCCHHHHHHHHH-HHHhCchhcc-ccccceEeccCcce--eEEEEEEEhhheee-eeeeeee-ecCchhhhh
Confidence 56788889999999999996 8899999999 46677777776422 33344443333233 4555533 566666888
Q ss_pred EEEEeccccCceeEEEEEEEEEec-CCCeEEEEEEEEEcCCC
Q 031759 86 FKVIEGNLLDQYKSFCCFFQVTPK-GEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 86 y~v~eG~~~~~y~~~~~t~~v~p~-~~gs~v~W~~~ye~~~~ 126 (153)
-++++|++ +...++++++|- +++|.|+..++||-.+.
T Consensus 77 ~~l~~GPF----k~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 77 MKLIDGPF----KYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhcCCh----hhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 88889976 556789999995 56899999999998754
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.12 E-value=0.00014 Score=52.80 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=72.0
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCe-------eEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeC
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKV-------QSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDY 79 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v-------~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~ 79 (153)
+..++.|+||+++||+++- + .+.+|.+..- ..|++ |. .+|..-.+. ..+|.. ...-++.++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t-~--~l~~W~~p~~~~~~~~~~~~~~---d~-~~GG~~~~~-~~~g~~--~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFT-E--GFGAWWPPEYHFVFSPGAEVVF---EP-RAGGRWYEI-GEDGTE--CEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHH-h--chhhccCCCcccccCCCccEEE---cc-cCCcEEEEe-cCCCcE--eceEEEEEEcC
Confidence 6789999999999999997 4 4778865221 23333 11 333222222 223332 33467777865
Q ss_pred CCCEEEEEEE--e-ccccCceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCC-CCCh---hHHHHHHHHHHHHHHhhh
Q 031759 80 ENNKITFKVI--E-GNLLDQYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN-VPEP---AAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 80 ~~~~~~y~v~--e-G~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~-~~~p---~~~~~~~~~~~k~ie~~l 149 (153)
.++ ++|+-. . ++....+.+ ..++++.|.+ +||.++.+-..-....+ .... ....+....++..|++||
T Consensus 72 ~~~-l~~tw~~~~~~~~~~~~~t-~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 72 PSR-LVFTWQINADWRPDPDKAS-EVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred CCE-EEEEeccCCCcCcCCCCce-EEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 544 445432 1 111111222 5788999988 89998877765433211 0111 122334456677777776
No 38
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.09 E-value=0.00026 Score=50.15 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=69.3
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF 86 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y 86 (153)
++.+..|+||+++||+++- +...+.+|... ..+.++..| |..+ +. ++ .+.-++.++++. ++++|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T-~~e~l~~W~~~-~~~~d~~~G-----G~~~---~~-~g----~~~g~~~~i~p~-~~l~~ 65 (126)
T cd08892 2 ISLTETFQVPAEELYEALT-DEERVQAFTRS-PAKVDAKVG-----GKFS---LF-GG----NITGEFVELVPG-KKIVQ 65 (126)
T ss_pred eEEEEEECCCHHHHHHHHC-CHHHHHhhcCC-CceecCCCC-----CEEE---Ee-CC----ceEEEEEEEcCC-CEEEE
Confidence 5678889999999999997 78889999863 333333222 3333 33 23 234456777654 44444
Q ss_pred EEEecccc-CceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhHHHHHHH-HHHHHHHhhh
Q 031759 87 KVIEGNLL-DQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAAMLQLCV-DVTKDVATKL 149 (153)
Q Consensus 87 ~v~eG~~~-~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~~~~~~~-~~~k~ie~~l 149 (153)
+---.+.. .... ..++.+.+.++||.++.+-...+.. ..+...+... .++..|.++|
T Consensus 66 ~w~~~~~~~~~~s--~v~~~l~~~~~gT~ltl~~~g~~~~----~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 66 KWRFKSWPEGHYS--TVTLTFTEKDDETELKLTQTGVPAG----EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEEcCCCCCCCcE--EEEEEEEECCCCEEEEEEEECCCCc----hHHHHHhhHHHHHHHHHHHHh
Confidence 43211212 1222 4688888887788877665544321 2233333333 3566666654
No 39
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.97 E-value=0.002 Score=48.67 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=73.7
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCce--eeEEEEEEEEEeCCCC
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKS--DLSCKVIMEEIDYENN 82 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~--~~~~kErl~~~D~~~~ 82 (153)
-.+..+..|++|++++|+++. |....|+|.| .+.++++++-.++. ..+-...+....+. ...+-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~-d~e~~~~w~~-~~~~~~vie~~~~~-~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLR-DTESYPQWMP-NCKESRVLKRTDDN-ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHh-hhHhHHHHHh-hcceEEEeecCCCC-cEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 356777889999999999997 8889999999 58999998854311 22333333222110 1022222112333245
Q ss_pred EEEEEEEeccc--c--Cc---eeEEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031759 83 KITFKVIEGNL--L--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 126 (153)
Q Consensus 83 ~~~y~v~eG~~--~--~~---y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~ 126 (153)
.+...+.+++. + .. ...+.+.+.+.|.++ +|.+++...+++.+.
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~ 169 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS 169 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC
Confidence 55555554432 2 12 355667788888854 699999999998753
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.90 E-value=0.0011 Score=45.76 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEEEEeccc
Q 031759 14 KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIEGNL 93 (153)
Q Consensus 14 ~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~v~eG~~ 93 (153)
+||+++||+++- +...+.+|.+ . ...+.+. .+|..-.+ ...++... ...=++.++++.++ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~t-~~~~~~~W~~--~---~~~~~~~-~~Gg~~~~-~~~~g~~~-~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEALT-DPEGLAQWFT--T---SEAEMDF-RPGGSFRF-MDPDGGEF-GFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHHH-SHHHHHHHSE--E---EEEEEEC-STTEEEEE-EETTSEEE-EEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHHC-CHhHHhhccC--C---Ccceeee-ecCCEEEE-EecCCCCc-eeeEEEEEEeCCEE-EEEEEEccCC
Confidence 689999999997 7888999932 1 1122332 44543333 23555443 45556888866555 6666433322
Q ss_pred cCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChhH-HHHHHHHHHHHHHhhh
Q 031759 94 LDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPAA-MLQLCVDVTKDVATKL 149 (153)
Q Consensus 94 ~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~k~ie~~l 149 (153)
... .....++++.+.+++|.++-+..=.+... .-+. ..+....++..|.+||
T Consensus 71 ~~~-~~~~v~~~~~~~~~~T~l~~~~~~~~~~~---~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 PDG-PESRVTFEFEEEGGGTRLTLTHSGFPDDD---EEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SSC-EEEEEEEEEEEETTEEEEEEEEEEEHSHH---HHHHCHHHHHHHHHHHHHHHH
T ss_pred CCC-CceEEEEEEEEcCCcEEEEEEEEcCCccH---HHHHHHHHHHHHHHHHHHHHh
Confidence 211 22357888888777888876662222211 0111 3445566667777765
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.87 E-value=0.0003 Score=50.40 Aligned_cols=97 Identities=20% Similarity=0.154 Sum_probs=61.5
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITF 86 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y 86 (153)
+..++.|+||+++||+++- +...+.+|.+. -.+.++ .+|..-.+.|...++ ...-++.++ +..+++.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t-~p~~l~~W~~~-~~~~~~------~~Gg~~~~~~~~~~~---~~~g~~~~~-~p~~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFV-DPEITTKFWFT-GSSGRL------EEGKTVTWDWEMYGA---SVPVNVLEI-EPNKRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHhc-CHHHhcccccc-CCCccc------cCCCEEEEEEEccCC---ceEEEEEEE-cCCCEEEE
Confidence 5688999999999999997 78889997553 223333 344444456644332 233466667 44566777
Q ss_pred EEEeccccCceeEEEEEEEEEecC-CCeEEEEEEE
Q 031759 87 KVIEGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLK 120 (153)
Q Consensus 87 ~v~eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~ 120 (153)
+--.++ .+. ..++++.+.+ +||.++.+-.
T Consensus 70 ~w~~~~---~~s--~v~~~l~~~~~ggT~ltl~~~ 99 (136)
T cd08901 70 EWGDPG---EPT--TVEWTFEELDDGRTFVTITES 99 (136)
T ss_pred EecCCC---CCE--EEEEEEEECCCCcEEEEEEEC
Confidence 654322 223 3688888877 7888776643
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0032 Score=46.19 Aligned_cols=138 Identities=18% Similarity=0.086 Sum_probs=74.4
Q ss_pred cceeeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCC
Q 031759 2 SLTGQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYEN 81 (153)
Q Consensus 2 ~~~g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~ 81 (153)
.....+..+..|++|+++||+++- +...+++|....=.+.++.-| .+....+... +++.. ....++.++.+..
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~T-dpe~l~~W~~~~~~~~d~r~g----g~~~~~~~~~-~g~~~-~~~~~~~~v~p~~ 77 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALT-DPELLARWFMPGGAEFDARTG----GGERVRFRGP-DGPVH-SFEGEYLEVVPPE 77 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhc-CHHHHHhhcCCCCCccceecC----CceEEeeecC-CCCee-ecceEEEEEcCCc
Confidence 345678899999999999999997 889999998721001111112 1223333333 33333 5566777775555
Q ss_pred C-EEEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCChh---HH--HHHHHHHHHHHHhhhc
Q 031759 82 N-KITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEPA---AM--LQLCVDVTKDVATKLI 150 (153)
Q Consensus 82 ~-~~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p~---~~--~~~~~~~~k~ie~~l~ 150 (153)
| .|+|..-+++.+. +.+ ..++++.+..+|. +++..........+.-+ .. .+....++..++++|-
T Consensus 78 rIv~tw~~~~~~~~~-~~~-~v~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 78 RIVFTWDFDEDGEPF-LKS-LVTITLTPEDDGG--TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEEeccCCCCCcc-cCc-eEEEEEEEecCCC--cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 4 4555554444321 222 4677777764332 23333333332222111 11 3445666667766653
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.11 E-value=0.011 Score=42.34 Aligned_cols=118 Identities=11% Similarity=0.063 Sum_probs=64.3
Q ss_pred eCCCHHHHHHHHhhCccccccc-CCCCeeEEEEEeCCcCCCCc-EEEEEeeCCCceeeEEEEEEEEEeCCCC-EEEEEEE
Q 031759 13 IKAPASTVREYFCSKLHHVSSA-CPDKVQSVDLLEGEWGKAGS-VIFGRYANEGKSDLSCKVIMEEIDYENN-KITFKVI 89 (153)
Q Consensus 13 i~a~a~kvw~~~~~~~~~lpk~-~P~~v~s~~~~eGdg~~~Gs-ir~~~~~~~~~~~~~~kErl~~~D~~~~-~~~y~v~ 89 (153)
++||+++||+++- +...+.+| .+. ...+++ .+|. .+. .. + .+.-++.++|+.+| .+++...
T Consensus 1 f~ap~e~Vw~A~T-dp~~l~~w~~~~-~~~~d~------~~GG~f~~---~~-~----~~~G~~~ev~pp~rlv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAFL-DAYTLTRLSLGS-PAEMDA------KVGGKFSL---FN-G----SVEGEFTELEKPKKIVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHHc-CHHHHHHHhcCC-CccccC------CcCCEEEE---ec-C----ceEEEEEEEcCCCEEEEEEecC
Confidence 4799999999997 78888888 431 222222 3333 332 21 2 23346666766554 4555543
Q ss_pred eccccCceeEEEEEEEEEecC-CCeEEEEEEE-EEcCCCCC--CChhHHHHHHHH-HHHHHHhhh
Q 031759 90 EGNLLDQYKSFCCFFQVTPKG-EGSFVTWTLK-YEKPNENV--PEPAAMLQLCVD-VTKDVATKL 149 (153)
Q Consensus 90 eG~~~~~y~~~~~t~~v~p~~-~gs~v~W~~~-ye~~~~~~--~~p~~~~~~~~~-~~k~ie~~l 149 (153)
+.+ ...++ ..|+++.+.+ ++|.++-+.. +....... ...+...+.... ++..|++||
T Consensus 65 ~~~-~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 65 DWE-EDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCC-CCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 211 11233 4788888864 5788877766 32221100 112333344444 577888776
No 44
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.04 E-value=0.072 Score=39.03 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=73.6
Q ss_pred EEEEEeCCC-------HHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCC
Q 031759 8 EAGVEIKAP-------ASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYE 80 (153)
Q Consensus 8 ~~ei~i~a~-------a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~ 80 (153)
++.++||.| .+++|+-+......-..+.| .+.+|++++.++ -.-.|.++|+. . .++|++.. ..
T Consensus 3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~~--~~l~Rel~f~~-~----~v~e~vt~--~~ 72 (141)
T cd08863 3 EHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVP-GLDRCEVLSESG--TVLERELTFGP-A----KIRETVTL--EP 72 (141)
T ss_pred cEEEecCCCCCCCccCHHHHHhHHHhhhCCchhccc-ccceEEEEecCC--CEEEEEEEECC-c----eEEEEEEe--cC
Confidence 445555543 56999999866666667889 499999997653 24669999975 3 89999774 45
Q ss_pred CCEEEEEEEe-ccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCCCCCCh--hHHHHHHHHHHHH
Q 031759 81 NNKITFKVIE-GNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNENVPEP--AAMLQLCVDVTKD 144 (153)
Q Consensus 81 ~~~~~y~v~e-G~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~~~~~p--~~~~~~~~~~~k~ 144 (153)
..++.|.+-. |+. .++.+....+|. .-.++.|+....+..++ ..+.+...++.+.
T Consensus 73 ~~~v~f~~~~~g~~--------l~~~iee~~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~ 130 (141)
T cd08863 73 PSRVHFLQADAGGT--------LTNTIEEPEDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE 130 (141)
T ss_pred CcEEEEEecCCCCe--------EEEEeccCCCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence 5667887766 322 244443333454 44677888665543323 3334444444443
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.71 E-value=0.14 Score=37.83 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=43.2
Q ss_pred EEEEEEeCCCH--------HHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEe
Q 031759 7 VEAGVEIKAPA--------STVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEID 78 (153)
Q Consensus 7 ~~~ei~i~a~a--------~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D 78 (153)
+++.+.||-|. +++|+-+.....+-..++| .+.+|++++-. ...-.|.++| |+ . .++|++..
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~f--g~--~-~v~E~v~~-- 71 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTF--GG--A-TVRERVTL-- 71 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEE--TT--E-EEEEEEEE--
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEE--CC--c-EEEEEEEE--
Confidence 45556666554 5799999865555667999 59999999754 3467899999 33 2 89999774
Q ss_pred CCCCEEEE
Q 031759 79 YENNKITF 86 (153)
Q Consensus 79 ~~~~~~~y 86 (153)
....++.|
T Consensus 72 ~~~~~V~f 79 (149)
T PF08982_consen 72 YPPERVDF 79 (149)
T ss_dssp ETTTEEEE
T ss_pred eCCcEEEE
Confidence 34446677
No 46
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.12 Score=37.60 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=79.1
Q ss_pred eeEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEee---CCCceeeEEEEEEEE--EeC
Q 031759 5 GQVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA---NEGKSDLSCKVIMEE--IDY 79 (153)
Q Consensus 5 g~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~---~~~~~~~~~kErl~~--~D~ 79 (153)
|++.....|+||.+-||+... ...+|..+.|. .+ |-+-.|+ ..+....++.. -+.++...++-|+++ +|
T Consensus 2 ~tF~~~~~i~aP~E~VWafhs-rpd~lq~LTpp-w~-VV~p~g~--eitqgtri~m~l~pfglp~~~tW~Arhte~~~d- 75 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHS-RPDALQRLTPP-WI-VVLPLGS--EITQGTRIAMGLTPFGLPAGLTWVARHTESGFD- 75 (153)
T ss_pred cceEEeeEecCCHHHHhhhhc-CccHHHhcCCC-cE-EeccCCC--cccceeeeeecceeecCCCCceEEEEeeecccC-
Confidence 677888999999999999987 67788888885 43 3222453 34444444442 232322278888887 43
Q ss_pred CCCEEEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 80 ENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 80 ~~~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
...+++=..+.|+++.-|. .-+-++.+.||++..+=.+.|+....
T Consensus 76 ~~~~FtDv~i~gPfp~~~W--rHtH~F~~egg~TvliD~Vsye~p~g 120 (153)
T COG4276 76 NGSRFTDVCITGPFPALNW--RHTHNFVDEGGGTVLIDSVSYELPAG 120 (153)
T ss_pred CcceeeeeeecCCccceee--EEEeeeecCCCcEEEEeeEEeeccCc
Confidence 3346777788999873333 34788888889999999999998755
No 47
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.93 E-value=0.19 Score=37.15 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=62.9
Q ss_pred EEEEEEeCCCHHHHHHHHhhCccc--ccccCCC---CeeEEEEEeCCcCCCCcEEEEE-eeC-CCc---------eeeEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHH--VSSACPD---KVQSVDLLEGEWGKAGSVIFGR-YAN-EGK---------SDLSC 70 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~--lpk~~P~---~v~s~~~~eGdg~~~Gsir~~~-~~~-~~~---------~~~~~ 70 (153)
++.++++++|+++||+++.+.... .-+.+.. .+.+++. +|+| -+++.-. ... ..| -. .+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~g---~~v~~~~~v~~~~lP~~~~k~v~~~l-~v 75 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGDG---VRVTVRQTVPADKLPSAARKFVGGDL-RV 75 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCCe---EEEEEEEecChhhCCHHHHHhcCCCe-EE
Confidence 357888999999999999842111 1122221 1333332 2332 1122111 111 001 11 33
Q ss_pred EEEEEEE---eCCCCEEEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEcCCC
Q 031759 71 KVIMEEI---DYENNKITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEKPNE 126 (153)
Q Consensus 71 kErl~~~---D~~~~~~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~~~~ 126 (153)
++. +.+ ++..++.+|++--.+.+ -+.++++.+.|.++||.++++++.+..-+
T Consensus 76 ~~~-e~w~~~~~g~~~g~~~~~~~G~P---~~~~G~~~L~~~~~gt~~~~~g~v~v~VP 130 (159)
T PF10698_consen 76 TRT-ETWTPLDDGRRTGTFTVSIPGAP---VSISGTMRLRPDGGGTRLTVEGEVKVKVP 130 (159)
T ss_pred EEE-EEEecCCCCeEEEEEEEEecCce---EEEEEEEEEecCCCCEEEEEEEEEEEEEc
Confidence 333 445 56777777776543333 56689999999888999999999886543
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.50 E-value=0.86 Score=35.29 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=71.7
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEee-C--C-CceeeEEEEEEEEEeCCCC
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYA-N--E-GKSDLSCKVIMEEIDYENN 82 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~-~--~-~~~~~~~kErl~~~D~~~~ 82 (153)
+-.+.+|++|++++|+++. |....++|.+ .++++++++--+... .|-.+.+. + . .+..+.+.-+....++...
T Consensus 47 ~~ge~~v~as~~~v~~ll~-D~~~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVK-DPRTRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHHh-CcchhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 3457788999999999996 8889999999 599999987432122 33333332 1 1 0111133223222223332
Q ss_pred EEEEEEEec-ccc--C-c---eeEEEEEEEEEec---CC-CeEEEEEEEEEcCCCCCCC
Q 031759 83 KITFKVIEG-NLL--D-Q---YKSFCCFFQVTPK---GE-GSFVTWTLKYEKPNENVPE 130 (153)
Q Consensus 83 ~~~y~v~eG-~~~--~-~---y~~~~~t~~v~p~---~~-gs~v~W~~~ye~~~~~~~~ 130 (153)
.+.-+-+.- .++ . + -..+.+-+.+.|. ++ .|.++..+..++.+++.|.
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 332222222 222 1 2 2345667788887 54 6999999999999766654
No 49
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=95.06 E-value=1.4 Score=35.03 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=84.0
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC--CCceeeEEEEEEEEE--eCCC-
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--EGKSDLSCKVIMEEI--DYEN- 81 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~--~~~~~~~~kErl~~~--D~~~- 81 (153)
+..+..+++|++++|+++. |....++|.+ ...++++++--+...+ +-.+.+.. -.+..+.+-.+-... +..+
T Consensus 79 fk~e~~vd~s~~~v~dlL~-D~~~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~ 155 (235)
T cd08873 79 FCVELKVQTCASDAFDLLS-DPFKRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGDP 155 (235)
T ss_pred EEEEEEecCCHHHHHHHHh-Ccchhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCCe
Confidence 5677789999999999997 8889999999 4889999873221222 33333321 111111222222211 2222
Q ss_pred CEEEEEEEe-cccc--C---ceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCC--CCChhHHHHHHHHHHHHHHhhhccC
Q 031759 82 NKITFKVIE-GNLL--D---QYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN--VPEPAAMLQLCVDVTKDVATKLIPQ 152 (153)
Q Consensus 82 ~~~~y~v~e-G~~~--~---~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~--~~~p~~~~~~~~~~~k~ie~~l~~~ 152 (153)
..+...-+. .-+| . ....+.+-+.+.|.+ ++|.|+.....+|.--. .-+-..+-......++.-+.||..|
T Consensus 156 ~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T cd08873 156 YKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVTN 235 (235)
T ss_pred EEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhccC
Confidence 223333333 1121 2 245677888999986 47999998888876321 1122344445566788888888764
No 50
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=92.70 E-value=3.7 Score=31.61 Aligned_cols=119 Identities=10% Similarity=0.015 Sum_probs=65.0
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC-CC--ceeeEEEEEEEEEeCCCCE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN-EG--KSDLSCKVIMEEIDYENNK 83 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~-~~--~~~~~~kErl~~~D~~~~~ 83 (153)
+..+..+++|++++++.+..+....++|.+. +.++++++--+...=-++.+.... ++ +..+.+--|....+..+..
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~ 129 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQMGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCV 129 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhhhceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEE
Confidence 4567788999999996666688889999994 888888764211111122221111 11 0010222222222333322
Q ss_pred EEEEEEeccc-c--Cc---eeEEEEEEEEEecC---CCeEEEEEEEEEcCCC
Q 031759 84 ITFKVIEGNL-L--DQ---YKSFCCFFQVTPKG---EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 84 ~~y~v~eG~~-~--~~---y~~~~~t~~v~p~~---~gs~v~W~~~ye~~~~ 126 (153)
+.....+-+. + .+ ...+.+-+.+.|.+ +.|.++|.+..++++.
T Consensus 130 ~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~ 181 (209)
T cd08905 130 LAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW 181 (209)
T ss_pred EEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC
Confidence 2111122221 1 22 23345567778863 4699999999999877
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.55 E-value=3.8 Score=31.42 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=75.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCce-eeEEEEEE---EEEeC--
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKS-DLSCKVIM---EEIDY-- 79 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~-~~~~kErl---~~~D~-- 79 (153)
.+-.+-.|++|++.+.+++. |....++|.|. ..+.+.++..+ .--.+-.+.+ +.|. . .-||=+ ..+|.
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~-d~~~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~--~~PwPv-~~RD~v~~~~~~~~~~ 120 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLN-EVELYKTWVPF-CIRSKKVKQLG-RADKVCYLRV--DLPWPL-SNREAVFRGFGVDRLE 120 (215)
T ss_pred EEEEEEEecCChhHeEEEEe-hhhhHhhhccc-ceeeEEEeecC-CceEEEEEEE--eCceEe-cceEEEEEEEEEeeec
Confidence 45567788999999999997 78889999995 55555554422 1112222222 2221 1 112222 11221
Q ss_pred CCCEEEEEEE--ec----------ccc-C--c---eeEEEEEEEEEecC-CCeEEEEEEEEEcCCCCCCCh--hHH-HHH
Q 031759 80 ENNKITFKVI--EG----------NLL-D--Q---YKSFCCFFQVTPKG-EGSFVTWTLKYEKPNENVPEP--AAM-LQL 137 (153)
Q Consensus 80 ~~~~~~y~v~--eG----------~~~-~--~---y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~~~~p--~~~-~~~ 137 (153)
++..+....- .. +++ . + ...+.+-+.++|.+ +.|.+++.+..+|.+...|.- +.+ ++.
T Consensus 121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~ 200 (215)
T cd08877 121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKF 200 (215)
T ss_pred cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHH
Confidence 4444433222 11 123 1 1 34556677888875 469999998888776644432 222 444
Q ss_pred HHHHHHHHHhh
Q 031759 138 CVDVTKDVATK 148 (153)
Q Consensus 138 ~~~~~k~ie~~ 148 (153)
+-.+++.|.+.
T Consensus 201 ~~~~~~~l~k~ 211 (215)
T cd08877 201 AGLLFEKIQKA 211 (215)
T ss_pred HHHHHHHHHHH
Confidence 45566665543
No 52
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=91.22 E-value=6.4 Score=31.26 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=65.3
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC-C--ceeeEEEEEEEEEeCCCC-
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE-G--KSDLSCKVIMEEIDYENN- 82 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~-~--~~~~~~kErl~~~D~~~~- 82 (153)
+..+..+++|++++++++. |....++|.++ +.++++++--+.... +..++..+- + +..+.+--+-..-+.++.
T Consensus 83 fK~e~~vd~s~e~v~~lL~-D~~~r~~Wd~~-~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~ 159 (240)
T cd08913 83 FKVEMVVHVDAAQAFLLLS-DLRRRPEWDKH-YRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDNGD 159 (240)
T ss_pred EEEEEEEcCCHHHHHHHHh-ChhhhhhhHhh-ccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence 4566788999999999995 89999999995 889999874221222 555543321 1 111022221111222232
Q ss_pred E--EEEEEE-ecccc--Cc---eeEEEEEEEEEecCC-CeEEEEEEEEEc
Q 031759 83 K--ITFKVI-EGNLL--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEK 123 (153)
Q Consensus 83 ~--~~y~v~-eG~~~--~~---y~~~~~t~~v~p~~~-gs~v~W~~~ye~ 123 (153)
. +..... -.+++ .+ ...+.+-+.+.|.++ .|.+++...-+|
T Consensus 160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 1 222222 22233 22 334566788888764 699988766555
No 53
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=90.08 E-value=8.2 Score=30.65 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=65.6
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC--CCceeeEEEEEEEE-EeCCCC
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--EGKSDLSCKVIMEE-IDYENN 82 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~--~~~~~~~~kErl~~-~D~~~~ 82 (153)
.+..+..+++|++++++++. |....++|.++ ..++++++--+...- |..++-.+ -.+..+.+..+--. ..+.+.
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~-D~~~r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLS-DFTKRPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHh-ChhhhchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 46677788999999999997 89999999995 889999875321222 66655332 11111122221111 121332
Q ss_pred EEEEEEE--ec-ccc--Cce---eE-EEEEEEEEecC-CCeEEEEEEEEEc
Q 031759 83 KITFKVI--EG-NLL--DQY---KS-FCCFFQVTPKG-EGSFVTWTLKYEK 123 (153)
Q Consensus 83 ~~~y~v~--eG-~~~--~~y---~~-~~~t~~v~p~~-~gs~v~W~~~ye~ 123 (153)
.+...+- .- -+| .+| .. +.+- .+.|.+ ++|.|+....-+|
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2322222 12 222 222 33 3344 677875 5799999888887
No 54
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=88.33 E-value=10 Score=29.27 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCHHHHHH-HHhhCcccccccCCCCeeEEEEEeC
Q 031759 6 QVEAGVEIKAPASTVRE-YFCSKLHHVSSACPDKVQSVDLLEG 47 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~-~~~~~~~~lpk~~P~~v~s~~~~eG 47 (153)
.+..+..+++|++++|. ++ .|....++|.++ +.++++++-
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll-~D~~~~~~W~~~-~~~~~vi~~ 90 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVI-LQPEKMVLWNKT-VSACQVLQR 90 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHH-hChhhccccCcc-chhhhheee
Confidence 35677888999999985 56 489999999995 889998864
No 55
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=86.30 E-value=11 Score=27.43 Aligned_cols=116 Identities=10% Similarity=0.037 Sum_probs=66.8
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCc--eeeEEEEEEEEEeCCCCEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGK--SDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~--~~~~~kErl~~~D~~~~~~ 84 (153)
+..+..+++|++++|+++. +....++|-| .+.++++++-.. ..-.+....+..-.+ ....+--+-...++++ ++
T Consensus 41 ~k~~~~i~~~~~~v~~~l~-d~~~~~~w~~-~~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~-~~ 116 (193)
T cd00177 41 LKAEGVIPASPEQVFELLM-DIDLRKKWDK-NFEEFEVIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDG-TY 116 (193)
T ss_pred EEEEEEECCCHHHHHHHHh-CCchhhchhh-cceEEEEEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCC-eE
Confidence 4567788999999999998 6788899999 588989887532 123455555532221 1002222222223323 22
Q ss_pred EEEE--Eecc-cc--Ccee---EEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 85 TFKV--IEGN-LL--DQYK---SFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 85 ~y~v--~eG~-~~--~~y~---~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
.... ++.+ .+ ..+- .+.+-+.+.|.+ ++|.+++....++.+.
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 2222 2221 12 1211 123446677774 4799999999998865
No 56
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=85.73 E-value=14 Score=28.24 Aligned_cols=136 Identities=9% Similarity=-0.017 Sum_probs=72.9
Q ss_pred EEEEEEe-CCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCC-cEEEEEeeC---CCceeeEEEEEEEEEe-CC
Q 031759 7 VEAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAG-SVIFGRYAN---EGKSDLSCKVIMEEID-YE 80 (153)
Q Consensus 7 ~~~ei~i-~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~G-sir~~~~~~---~~~~~~~~kErl~~~D-~~ 80 (153)
+..+.++ ++|++.+++++. |....++|.+. +.+.++++-+.. .| .|-.+.... =.+.- .+--|-.-.| +.
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~-~~~~~~le~~~~-~~~~i~y~~~~~P~P~s~RD-~V~~r~~~~~~~~ 127 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYW-DDEYRKKWDET-VIEHETLEEDEK-SGTEIVRWVKKFPFPLSDRE-YVIARRLWESDDR 127 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHc-ChhhHhhhhhh-eeeEEEEEecCC-CCcEEEEEEEECCCcCCCce-EEEEEEEEEcCCC
Confidence 4455566 679999999997 77789999995 777787765432 12 222322211 01111 3322322233 22
Q ss_pred CCEEEEEEEec-cccC----ceeEEEEEEEEEec--C-CCeEEEEEEEEEcCCCCCCChhHH-----HHHHHHHHHHHHh
Q 031759 81 NNKITFKVIEG-NLLD----QYKSFCCFFQVTPK--G-EGSFVTWTLKYEKPNENVPEPAAM-----LQLCVDVTKDVAT 147 (153)
Q Consensus 81 ~~~~~y~v~eG-~~~~----~y~~~~~t~~v~p~--~-~gs~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~k~ie~ 147 (153)
...+....+.- ..+. ....|.+.+.+.|. + ++|.+..+..-++.+. . |.-+ ....-++++.|..
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-I--P~wlvN~~~~~~~~~~l~~l~~ 204 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-I--PRELAKLAVKRGMPGFLKKLEN 204 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-C--CHHHHHHHHHhhhHHHHHHHHH
Confidence 22222222222 1121 35667778888886 4 4688888777766443 3 3233 2233455566655
Q ss_pred hh
Q 031759 148 KL 149 (153)
Q Consensus 148 ~l 149 (153)
.+
T Consensus 205 a~ 206 (209)
T cd08870 205 AL 206 (209)
T ss_pred HH
Confidence 44
No 57
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=84.70 E-value=15 Score=27.86 Aligned_cols=141 Identities=11% Similarity=0.049 Sum_probs=73.8
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEe-eCC-Cc--eeeEEEEEEEEEeCCCC
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRY-ANE-GK--SDLSCKVIMEEIDYENN 82 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~-~~~-~~--~~~~~kErl~~~D~~~~ 82 (153)
+..+..+++|+++++..+..|.+..++|.+. +..+++++.-++. -.|-...+ ... .+ ..+.+--|--..++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~-~~~~~~i~~~d~~-~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVESLPSWNPT-VLECKIIQVIDDN-TDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccccceecCc-ccceEEEEEecCC-cEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 4557788999999997655688889999995 7788887652211 12222112 111 11 01022222222233222
Q ss_pred EEEEEEEec-ccc--Cc---eeEEEEEEEEEecC---CCeEEEEEEEEEcCCCCCCCh--hHH-HHHHHHHHHHHHhhhc
Q 031759 83 KITFKVIEG-NLL--DQ---YKSFCCFFQVTPKG---EGSFVTWTLKYEKPNENVPEP--AAM-LQLCVDVTKDVATKLI 150 (153)
Q Consensus 83 ~~~y~v~eG-~~~--~~---y~~~~~t~~v~p~~---~gs~v~W~~~ye~~~~~~~~p--~~~-~~~~~~~~k~ie~~l~ 150 (153)
.+...-++- ..+ .+ -..+.+-+.+.|.+ ++|.++|.+..++.+.- |.- +.. ......+++.|..++.
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHHh
Confidence 222232331 112 22 22334566777753 36999999999998652 321 221 3333455666665553
No 58
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=84.47 E-value=16 Score=27.96 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=61.4
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccc--cccCCCCeeEEEEEeCCcCCCCcEEEEEeeC--C--CceeeEEE-EEEEEEeC
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHV--SSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--E--GKSDLSCK-VIMEEIDY 79 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~l--pk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~--~--~~~~~~~k-Erl~~~D~ 79 (153)
+..+..++++++++++.+. |..+. ++|.+ .+.++++++--+... .|-.+.... . ......+- ......++
T Consensus 48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~-~~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d 124 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQ-NVKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYED 124 (208)
T ss_pred EEEEEEecCCHHHHHHHHH-hccchhhhhhhh-ccccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCC
Confidence 5577788999999999997 44333 79999 488999987522111 222222211 0 00010221 11122233
Q ss_pred CCCEEEEEEEecc-cc--CceeE-----EEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 80 ENNKITFKVIEGN-LL--DQYKS-----FCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 80 ~~~~~~y~v~eG~-~~--~~y~~-----~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
....+.+...+-+ .+ .+|-. +...++..|.+ ++|.++|.+..++++.
T Consensus 125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~ 180 (208)
T cd08903 125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY 180 (208)
T ss_pred ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC
Confidence 3223333333332 12 22221 23344445544 4799999999999855
No 59
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=80.91 E-value=15 Score=28.76 Aligned_cols=105 Identities=9% Similarity=0.036 Sum_probs=65.6
Q ss_pred EeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEEEEec
Q 031759 12 EIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIEG 91 (153)
Q Consensus 12 ~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~v~eG 91 (153)
.|..+++.+|+++. +...+.++.| ..++.+++.-+. .-+.+-.++.+--+=.. ...-+++ .++..++++-. -+|
T Consensus 75 ligysp~~my~vVS-~V~~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeVGFk~l~E-~y~S~Vt-~~~p~l~kt~~-~d~ 148 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVS-NVSEYHEFVP-WCKKSDVTSRRP-SGPLKADLEVGFKPLDE-RYTSNVT-CVKPHLTKTVC-ADG 148 (227)
T ss_pred hhCCCHHHHHHHHH-hHHHhhcccc-ceeccceeecCC-CCCceeeEEecCcccch-hheeeeE-EecccceEEee-ccc
Confidence 46899999999997 7888999999 788878775442 12344444432111011 2233333 44555444432 355
Q ss_pred cccCceeEEEEEEEEEecC---CCeEEEEEEEEEcCC
Q 031759 92 NLLDQYKSFCCFFQVTPKG---EGSFVTWTLKYEKPN 125 (153)
Q Consensus 92 ~~~~~y~~~~~t~~v~p~~---~gs~v~W~~~ye~~~ 125 (153)
.+. ......+++.|+. +.|.+...+.||-..
T Consensus 149 rLF---~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 149 RLF---NHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cHH---HhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 553 3345689999975 369999999999763
No 60
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=77.16 E-value=34 Score=26.93 Aligned_cols=140 Identities=10% Similarity=0.032 Sum_probs=74.3
Q ss_pred EEEEEEeC-CCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCc----eeeE-EEEEEEEEeCC
Q 031759 7 VEAGVEIK-APASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGK----SDLS-CKVIMEEIDYE 80 (153)
Q Consensus 7 ~~~ei~i~-a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~----~~~~-~kErl~~~D~~ 80 (153)
+..+..++ ++++.+.+++. |....++|.. .+.+.++++-.. ..+ +.+......+ ..+. ..-++...++.
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~-D~~~r~~Wd~-~~~~~~vie~l~--~~~-~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~ 128 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFF-DPDVRMDWET-TLENFHVVETLS--QDT-LIFHQTHKRVWPAAQRDALFVSHIRKIPAL 128 (235)
T ss_pred EEEEEEECCCCHHHHHHHHh-ChhhHHHHHh-hhheeEEEEecC--CCC-EEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence 55666677 99999999997 7888999999 488888876421 111 2222211111 0001 11222223332
Q ss_pred C-----C---EEEEEEEecccc--CceeEEEEE---------------EEEEecCCCeEEEEEEEEEcCCCCCCCh---h
Q 031759 81 N-----N---KITFKVIEGNLL--DQYKSFCCF---------------FQVTPKGEGSFVTWTLKYEKPNENVPEP---A 132 (153)
Q Consensus 81 ~-----~---~~~y~v~eG~~~--~~y~~~~~t---------------~~v~p~~~gs~v~W~~~ye~~~~~~~~p---~ 132 (153)
. . .+..++.=...+ .+|-....+ +.+.|.+++|.+++....+|++.- |.. .
T Consensus 129 ~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~i-P~wvvn~ 207 (235)
T cd08872 129 EEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWA-PASVLRA 207 (235)
T ss_pred ccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCc-cHHHHHH
Confidence 1 1 223333222233 222221111 123343346999998888888663 322 1
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 031759 133 AMLQLCVDVTKDVATKLIPQ 152 (153)
Q Consensus 133 ~~~~~~~~~~k~ie~~l~~~ 152 (153)
-++..+-++.+.+.+|++.+
T Consensus 208 ~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 208 VYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHhhchHHHHHHHHHHHHh
Confidence 22455577889999988753
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=77.10 E-value=30 Score=26.39 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=64.4
Q ss_pred EEEEEEe-CCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC---CceeeEEEEEEEEEeCCCC
Q 031759 7 VEAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE---GKSDLSCKVIMEEIDYENN 82 (153)
Q Consensus 7 ~~~ei~i-~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~---~~~~~~~kErl~~~D~~~~ 82 (153)
+..+..+ ++|++.|.+++. |....++|.+. +.++++++-+...---|-.+....= .+.- .+-.|-...|+++.
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~-D~~~r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD-~V~~r~~~~~~~~~ 123 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQL-DLEYRKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRD-YVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh-CHHHHHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCcc-EEEEEEEEEcCCCC
Confidence 3444545 999999999997 78889999994 7788888753211112223322111 0111 44444445666654
Q ss_pred EEE--EEEEec-ccc--C---ceeEEEEEEEEEecC----CCeEEEEEEEEEcC
Q 031759 83 KIT--FKVIEG-NLL--D---QYKSFCCFFQVTPKG----EGSFVTWTLKYEKP 124 (153)
Q Consensus 83 ~~~--y~v~eG-~~~--~---~y~~~~~t~~v~p~~----~gs~v~W~~~ye~~ 124 (153)
.+. ..-++- ..+ . ...+|.+.+.+.|.+ +||.+.++..-++.
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg 177 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG 177 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC
Confidence 422 111221 112 1 255677788888862 47888765554333
No 62
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=55.78 E-value=87 Score=23.63 Aligned_cols=116 Identities=13% Similarity=0.000 Sum_probs=66.2
Q ss_pred EEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC--CCceeeEEEEEEEEEeCCCCEE
Q 031759 7 VEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN--EGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~--~~~~~~~~kErl~~~D~~~~~~ 84 (153)
+..+..++++++++++.+. +. -++|.++ +.++++++--+.. -.|-...+.. ..+..+.+--|.-..+.++..+
T Consensus 46 ~K~~~~v~a~~~~v~~~l~-d~--r~~Wd~~-~~~~~vie~id~~-~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 46 WRASTEVEAPPEEVLQRIL-RE--RHLWDDD-LLQWKVVETLDED-TEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEeCCCHHHHHHHHH-HH--Hhccchh-hheEEEEEEecCC-cEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 4678889999999999886 33 4899995 8888888642211 1222222211 1112213334333334444322
Q ss_pred --EEEEEec--cccCc---eeEEEEEEEEEecC-CCeEEEEEEEEEcCCCC
Q 031759 85 --TFKVIEG--NLLDQ---YKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN 127 (153)
Q Consensus 85 --~y~v~eG--~~~~~---y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~ 127 (153)
.+.-++- ..+.+ -..+.+-+.++|.+ ++|.+++.+..++.+.-
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 2222321 12212 23445677788975 57999999999998663
No 63
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=51.80 E-value=1.1e+02 Score=23.43 Aligned_cols=115 Identities=9% Similarity=0.054 Sum_probs=61.9
Q ss_pred EEEEEe-CCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC--CceeeEEEEEEEEEeCCCCEE
Q 031759 8 EAGVEI-KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE--GKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 8 ~~ei~i-~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~--~~~~~~~kErl~~~D~~~~~~ 84 (153)
..+..+ ++|++.+++++. |....++|-|. +..+++++--. .--.|....+..- ....+.+--|.. .+.++..+
T Consensus 50 k~~~~~~~~s~e~~~~~l~-D~~~r~~Wd~~-~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~v 125 (222)
T cd08871 50 KVSAIFPDVPAETLYDVLH-DPEYRKTWDSN-MIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEYI 125 (222)
T ss_pred EEEEEeCCCCHHHHHHHHH-Chhhhhhhhhh-hceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEEE
Confidence 344555 699999999997 77788999995 77777776421 1123434443211 111102222322 22232211
Q ss_pred E-EEEEe-cccc--Cce---eEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 85 T-FKVIE-GNLL--DQY---KSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 85 ~-y~v~e-G~~~--~~y---~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
. ..-++ .+.+ .+| ..+.+-+.+.|.+ ++|.++|....++.+.
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 1 11111 1122 222 2234556777874 5799999998888865
No 64
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.45 E-value=99 Score=21.55 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=54.4
Q ss_pred EEEEeCCCHHHHHHHHhhCcc-cccccCCCCeeEEEEEeCCcCCCCcEEEEEe----eCCCceeeEEEEEEEEEeCCCCE
Q 031759 9 AGVEIKAPASTVREYFCSKLH-HVSSACPDKVQSVDLLEGEWGKAGSVIFGRY----ANEGKSDLSCKVIMEEIDYENNK 83 (153)
Q Consensus 9 ~ei~i~a~a~kvw~~~~~~~~-~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~----~~~~~~~~~~kErl~~~D~~~~~ 83 (153)
.+..+++||+.||+.+.+..- ++.+.-...+ .+..+.-++| +.+. .++=+|+.+ ..++.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~-----------~~~~L~G~~Y~K~~~~~~----~~~v~It~~-~~~~~ 66 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKL-----------PVKQLKGFSYQKKFKNKR----EAKVKITEY-EPNKR 66 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCC-----------ChhhcCCcEEEEEcCCCC----EEEEEEEEE-cCCCE
Confidence 455689999999999974211 1222222211 1122222233 2222 455557766 66777
Q ss_pred EEEEEEeccccCceeEEEEEEEEEecCCC-eEEEEEEEEEcCC
Q 031759 84 ITFKVIEGNLLDQYKSFCCFFQVTPKGEG-SFVTWTLKYEKPN 125 (153)
Q Consensus 84 ~~y~v~eG~~~~~y~~~~~t~~v~p~~~g-s~v~W~~~ye~~~ 125 (153)
|.+++..-. ..+..+-++.|.++| |.|+.+=+++..+
T Consensus 67 Y~~~~~s~~-----~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 67 YAATFSSSR-----GTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEEEEecC-----CCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 888776432 223456677887766 8888776666553
No 65
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=44.53 E-value=41 Score=25.75 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEEEEeccc
Q 031759 14 KAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIEGNL 93 (153)
Q Consensus 14 ~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~v~eG~~ 93 (153)
..+..|+|+ +.++-+.--|..| .+.|... |.. ....+++..+..-. ..=.-|-.+|+....|.|+|-|-++
T Consensus 4 ~i~v~K~W~----d~~n~~~~RP~sI-~v~L~~n-g~~--~~~~~~l~~~n~W~-~tf~~Lpkyd~~G~~i~YtV~E~~V 74 (187)
T cd00222 4 NLSGTKIWD----DYDDKFKKRPAKI-SVQLLAN-GEK--YVKIVTVTKDNNWK-YEFKDLPKYDNEGKKINYTVVEVQV 74 (187)
T ss_pred EEEEEEEEC----CCCCCCCCCCCEE-EEEEEeC-Cee--eeeEEEecCCCCeE-EEEcCCCcccCCCCEEEEEEEeecC
Confidence 344556665 2334456677545 5666632 211 34556666555322 2334566677788999999999877
Q ss_pred cCceeE
Q 031759 94 LDQYKS 99 (153)
Q Consensus 94 ~~~y~~ 99 (153)
+. |+.
T Consensus 75 ~~-Y~~ 79 (187)
T cd00222 75 PD-YET 79 (187)
T ss_pred CC-cEE
Confidence 63 443
No 66
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=41.67 E-value=50 Score=25.44 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=62.5
Q ss_pred EEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeC-CcCCCCcEEEEEeeC-CCc------eeeEEEEEEEEEeC
Q 031759 8 EAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG-EWGKAGSVIFGRYAN-EGK------SDLSCKVIMEEIDY 79 (153)
Q Consensus 8 ~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eG-dg~~~Gsir~~~~~~-~~~------~~~~~kErl~~~D~ 79 (153)
..+-.++++++++|+.+. +.....+|-+ .+.++++++- |.+. .|-+..... .++ +. .++.+ ..+++
T Consensus 49 k~egvi~~~~e~v~~~l~-~~e~r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV-~vr~~-~r~~~ 122 (204)
T cd08904 49 RVEGIIPESPAKLIQFMY-QPEHRIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFV-DLVHI-KRYEG 122 (204)
T ss_pred EEEEEecCCHHHHHHHHh-ccchhhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEE-EEEEE-EEeCC
Confidence 456778999999999987 5666789999 5888888874 3212 333322221 111 11 12221 11344
Q ss_pred CCCEEEEEEEeccc-c--Cce---eEEEEEEEEEecC-C--CeEEEEEEEEEcCCC
Q 031759 80 ENNKITFKVIEGNL-L--DQY---KSFCCFFQVTPKG-E--GSFVTWTLKYEKPNE 126 (153)
Q Consensus 80 ~~~~~~y~v~eG~~-~--~~y---~~~~~t~~v~p~~-~--gs~v~W~~~ye~~~~ 126 (153)
....+.+.-++-+- + .+| ..+.+-+-+.|-+ + +|.++|-+..++.+.
T Consensus 123 ~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 123 NMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 33334444444332 1 221 1112334445653 2 699999999888855
No 67
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=39.64 E-value=1.5e+02 Score=21.83 Aligned_cols=119 Identities=11% Similarity=-0.081 Sum_probs=65.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCCC-ce--eeEEEEEEEEEeC-CC
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANEG-KS--DLSCKVIMEEIDY-EN 81 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~~-~~--~~~~kErl~~~D~-~~ 81 (153)
.+..+..+.++++++...+..|....++|.+. +.++++++-.. .-..|..+....-- +. .+.+--|--..++ ..
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~-~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDLRYRPEWDKN-VAKAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcccchhhCchh-cccEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 34556677889988555444588889999995 77888876421 11355554442111 10 1022122111222 22
Q ss_pred CEEEEEEEecc-cc--Cc---eeEEEEEEEEEecCC-CeEEEEEEEEEcCCC
Q 031759 82 NKITFKVIEGN-LL--DQ---YKSFCCFFQVTPKGE-GSFVTWTLKYEKPNE 126 (153)
Q Consensus 82 ~~~~y~v~eG~-~~--~~---y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~ 126 (153)
..+...-++.+ .+ .+ -..+.+-+.+.|.++ .|.++|....++.+.
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~ 175 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW 175 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC
Confidence 23333222222 11 11 234556777888754 599999999998875
No 68
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=38.02 E-value=1.8e+02 Score=22.13 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCceeeEEEEEEEEEeCCCCEEEEEEEecccc
Q 031759 62 NEGKSDLSCKVIMEEIDYENNKITFKVIEGNLL 94 (153)
Q Consensus 62 ~~~~~~~~~kErl~~~D~~~~~~~y~v~eG~~~ 94 (153)
.+| .+||-+--+++.+..+.|.+-++.+-
T Consensus 46 ~~G----kvKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 46 SNG----KVKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp ETT----EEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CCC----ceEEEEEEecCCCceEEEEeeeeecc
Confidence 466 99999999999999999998776543
No 69
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=37.77 E-value=1.7e+02 Score=21.92 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=33.0
Q ss_pred EEEEEEeCCCHHHHHHHHhhC-cccccccCCCCeeEEEEEeCC
Q 031759 7 VEAGVEIKAPASTVREYFCSK-LHHVSSACPDKVQSVDLLEGE 48 (153)
Q Consensus 7 ~~~ei~i~a~a~kvw~~~~~~-~~~lpk~~P~~v~s~~~~eGd 48 (153)
+..+..|+++++++.+.+.+. ....++|-+. +.++++++.-
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~-~~~~~~le~i 89 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLKWDKS-LKHYEVLEKI 89 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCcccccccccc-ccceEEEEEe
Confidence 567788899999999998731 5667899995 8899998763
No 70
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=33.84 E-value=2.1e+02 Score=21.73 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=61.5
Q ss_pred EEEEEEeC-CCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeC-----CCceeeEEEEEEEEEeCC
Q 031759 7 VEAGVEIK-APASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYAN-----EGKSDLSCKVIMEEIDYE 80 (153)
Q Consensus 7 ~~~ei~i~-a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~-----~~~~~~~~kErl~~~D~~ 80 (153)
+..+..+. ++++.+++++. |....++|.+. +.++.-.+.++ -.|-.+.+.. +-.+. ..+.+ ..+|..
T Consensus 51 ~k~~~~~~~~s~~~~~~~l~-D~~~r~~Wd~~-~~~~~~~~~~~---~~i~y~~~k~PwPvs~RD~V-~~r~~-~~~~~~ 123 (207)
T cd08910 51 YKVFGVLEDCSPSLLADVYM-DLEYRKQWDQY-VKELYEKECDG---ETVIYWEVKYPFPLSNRDYV-YIRQR-RDLDVE 123 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHh-CHHHHHHHHHH-HHhheeecCCC---CEEEEEEEEcCCCCCCceEE-EEEEe-ccccCC
Confidence 44566676 79999999997 78889999995 44432111221 1233333321 11121 22333 335544
Q ss_pred CCEEEE---EEEec-ccc--C---ceeEEEEEEEEEecC-CCeEEEEEEEEEcCCC
Q 031759 81 NNKITF---KVIEG-NLL--D---QYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNE 126 (153)
Q Consensus 81 ~~~~~y---~v~eG-~~~--~---~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~ 126 (153)
+..+.. ...+- ..+ . ....|.+.+.++|.+ ++|.+++...-++.+.
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~ 179 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM 179 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc
Confidence 442211 11111 111 1 245677888888875 5798888877777544
No 71
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=33.77 E-value=73 Score=23.75 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=36.5
Q ss_pred CcEEEEEeeCCCceeeEEEEEEEEEeCCCCEEEEEEEecccc-CceeEEEEEEEEEecCCCeEEEEE-EEEEcCC
Q 031759 53 GSVIFGRYANEGKSDLSCKVIMEEIDYENNKITFKVIEGNLL-DQYKSFCCFFQVTPKGEGSFVTWT-LKYEKPN 125 (153)
Q Consensus 53 Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~~y~v~eG~~~-~~y~~~~~t~~v~p~~~gs~v~W~-~~ye~~~ 125 (153)
|..+.|....|.+ . .-.++-.++--+.|-+.|.-+||.++ .+| |.|+++.|- ..|++..
T Consensus 50 GVL~SWAvPkGPs-~-dp~~kRLAv~~EDHpl~Y~~FEG~IP~g~Y------------GaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKGPS-L-DPADKRLAVHVEDHPLDYADFEGTIPKGEY------------GAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcCCC-C-CcccceeeeEccCccchhccccccccCCcc------------CCccEEEEeCceEEeCC
Confidence 5677777766532 2 23344456777777777777777766 344 346777774 5566653
No 72
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=33.38 E-value=1.2e+02 Score=24.44 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=32.2
Q ss_pred eccccCceeEEEEEEEEEecCC-CeEEEEEEEEEcCCCCCCChhHHHHHHHHHHHHHHh
Q 031759 90 EGNLLDQYKSFCCFFQVTPKGE-GSFVTWTLKYEKPNENVPEPAAMLQLCVDVTKDVAT 147 (153)
Q Consensus 90 eG~~~~~y~~~~~t~~v~p~~~-gs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~ 147 (153)
+=+++ .-..+++|++-++.|+ -|.++|++.|...+- ++|...+.+.++.
T Consensus 85 nQPvF-~aNyikGtV~pvpgGg~~g~as~Kl~F~~GG~--------ieFgq~~l~~~s~ 134 (261)
T KOG3294|consen 85 NQPVF-GANYIKGTVQPVPGGGWEGEASFKLTFNEGGC--------IEFGQLLLQAASR 134 (261)
T ss_pred cCccc-ccceeeeeEeecCCCCccceeEEEEEecCCCc--------hhHHHHHHHHHHH
Confidence 34444 2234578999888766 578999999988743 4555555555554
No 73
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=33.32 E-value=1.1e+02 Score=19.20 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.2
Q ss_pred EEEEEEEEEeCCCCEEEEEE
Q 031759 69 SCKVIMEEIDYENNKITFKV 88 (153)
Q Consensus 69 ~~kErl~~~D~~~~~~~y~v 88 (153)
.++-++..+|.+++++.-++
T Consensus 52 ~v~~kV~~id~~~~~i~Ls~ 71 (73)
T cd05703 52 ALKAKVVGVDKEHKLLRLSA 71 (73)
T ss_pred EEEEEEEEEeCCCCEEEEEe
Confidence 78889999999999887765
No 74
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=30.65 E-value=2.1e+02 Score=20.77 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=51.3
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCccc-ccccCCCCeeEEEEEeCC-cCCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCE
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHH-VSSACPDKVQSVDLLEGE-WGKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNK 83 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~-lpk~~P~~v~s~~~~eGd-g~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~ 83 (153)
+++.++..+-+.+.+-.++. |+.- +|+++| .+++++. +|+ ....| + | ++-.. .++-+ .-+...+=+
T Consensus 2 ~~~~~i~t~H~~e~v~~ILS-DP~F~lp~l~p-~ik~v~~-~~~sF~~~g--~---~--~~~~~-~~~G~-vy~s~~~It 69 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILS-DPEFVLPRLFP-PIKSVKV-EENSFRAEG--K---F--GGFPF-EMKGN-VYVSSNEIT 69 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT--HHHHHHHHST-TEEEEE--STTEEEEEE--E---E--TTEEE-EEEEE-EEEETTEEE
T ss_pred eEEEEeccCCChHheEEEec-CCccEecccCC-ceEEEEe-cCCEEEEEE--E---E--eeEEE-EEEEE-EEEccceEE
Confidence 35678888899999999998 5555 999999 5899984 443 11111 1 2 22222 44444 334444555
Q ss_pred EEEEEEeccccCceeEEEEEEEEEecCCCeEEEEEEEEEc
Q 031759 84 ITFKVIEGNLLDQYKSFCCFFQVTPKGEGSFVTWTLKYEK 123 (153)
Q Consensus 84 ~~y~v~eG~~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye~ 123 (153)
|.|.+..|+.. ..=+.+++..+ + .++..++||-
T Consensus 70 Yvf~~~~g~~~---g~GkL~i~~~~---~-~i~l~~eyeg 102 (136)
T PF11485_consen 70 YVFNLAGGGPN---GNGKLTIQLEN---G-KIKLIFEYEG 102 (136)
T ss_dssp EEEE----ETT---EEEEEEEEEET---T-EEEEEEEES-
T ss_pred EEEEeeccCCC---CcEEEEEEecC---C-EEEEEEEccc
Confidence 66666665321 21123455432 2 5667777763
No 75
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=28.12 E-value=49 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=19.2
Q ss_pred EcCCCCCCChhHHHHHHHHHHHHHHhhh
Q 031759 122 EKPNENVPEPAAMLQLCVDVTKDVATKL 149 (153)
Q Consensus 122 e~~~~~~~~p~~~~~~~~~~~k~ie~~l 149 (153)
||.+.+..-|+.+++.+..+.+.||..|
T Consensus 104 eP~d~D~~~p~~~v~~~~~~l~ele~~L 131 (132)
T PF08868_consen 104 EPVDKDAEFPEKWVDKGEELLKELEDEL 131 (132)
T ss_dssp ----T-B-EEHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3555555557889999999999999876
No 76
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=25.08 E-value=3.3e+02 Score=21.09 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=35.7
Q ss_pred CCceeeEEEEEEEEEeCCCCEEEEEEEecc----ccCceeEEEEEEEEEecCCCeEEEEEEEEE
Q 031759 63 EGKSDLSCKVIMEEIDYENNKITFKVIEGN----LLDQYKSFCCFFQVTPKGEGSFVTWTLKYE 122 (153)
Q Consensus 63 ~~~~~~~~kErl~~~D~~~~~~~y~v~eG~----~~~~y~~~~~t~~v~p~~~gs~v~W~~~ye 122 (153)
|.++. ..++-|=.+-+..--|.|..-+.. ++. =-+|.+..+|...++.+...|.+.|+
T Consensus 135 Gi~Vd-k~~~miGsy~P~~e~y~~~~p~eeaPsG~la-RG~Y~aks~f~DdD~~~~l~~~w~fe 196 (200)
T PF02115_consen 135 GIPVD-KREEMIGSYAPQTEPYEKTFPEEEAPSGMLA-RGSYTAKSKFVDDDKNVHLEWEWSFE 196 (200)
T ss_dssp TEEEE-EEEEEEEEE--ESSEEEEEEEEEE--BSTTT--EEEEEEEEEEETTSSECEEEEEEEE
T ss_pred CEeEc-ccceeeeccCCCCcceEEeCcCccCCCceeE-eeeeeEEEEEEeCCCcEEEEEEEEEE
Confidence 33344 556666667776677777776533 332 26788999999876667666666655
No 77
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=24.93 E-value=1.8e+02 Score=18.12 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=30.7
Q ss_pred cccccCCCCeeEEEEEeCCcC-CCCcEEEEEe-eCCCceeeEEEEEEE-EEeCCCCEEEEEEEecc
Q 031759 30 HVSSACPDKVQSVDLLEGEWG-KAGSVIFGRY-ANEGKSDLSCKVIME-EIDYENNKITFKVIEGN 92 (153)
Q Consensus 30 ~lpk~~P~~v~s~~~~eGdg~-~~Gsir~~~~-~~~~~~~~~~kErl~-~~D~~~~~~~y~v~eG~ 92 (153)
.+.-|.|+ -++|+++-.+.+ .+.....++. ..+| .+.-.+. .+.+-...|.|.+-..+
T Consensus 14 ~F~vwaP~-A~~V~l~~~~~~~~~~~~~~m~~~~~~G----~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 14 TFRVWAPN-AKSVELVLYFNGSWPAEEYPMTRKDDDG----VWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEE-TT-ESEEEEEEETTTSSEEEEEEEEEECTTT----EEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEECCC-CCEEEEEEEeeecCCCceEEeeecCCCC----EEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 36679995 889998744332 1222333332 3345 5555544 23233468888877654
No 78
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=23.44 E-value=1.2e+02 Score=20.64 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.8
Q ss_pred EEeCCCCEEEEEEEecc
Q 031759 76 EIDYENNKITFKVIEGN 92 (153)
Q Consensus 76 ~~D~~~~~~~y~v~eG~ 92 (153)
-+|..+|+|+|.-++|-
T Consensus 38 YId~~~RtYtw~PI~gT 54 (94)
T PF08473_consen 38 YIDEVNRTYTWTPINGT 54 (94)
T ss_pred eeeeeceeEEEeccCCC
Confidence 47899999999999885
No 79
>COG4933 Uncharacterized conserved protein [Function unknown]
Probab=23.40 E-value=99 Score=22.11 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=23.4
Q ss_pred CcceeeEEEEEEeCCCHHHHHHHHh
Q 031759 1 MSLTGQVEAGVEIKAPASTVREYFC 25 (153)
Q Consensus 1 m~~~g~~~~ei~i~a~a~kvw~~~~ 25 (153)
||+.|.+..+....+++...|+..+
T Consensus 43 ~aVvGef~~e~V~~~~~~siw~~~~ 67 (124)
T COG4933 43 KAVVGEFTAERVEQVAIESIWRKAG 67 (124)
T ss_pred hheEEEEEeeeEEEcchHHHHHHhc
Confidence 6889999999999999999999987
No 80
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.65 E-value=1.8e+02 Score=17.47 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=16.0
Q ss_pred EEEEEEEEEeCCCCEEEEE
Q 031759 69 SCKVIMEEIDYENNKITFK 87 (153)
Q Consensus 69 ~~kErl~~~D~~~~~~~y~ 87 (153)
.++=|+..+|.+++.+..+
T Consensus 50 ~i~~~V~~id~~~~~i~ls 68 (69)
T cd05697 50 KVKCRVLSVEPERKRLVLT 68 (69)
T ss_pred EEEEEEEEEECCCCEEEEE
Confidence 7888999999998887654
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=21.17 E-value=4e+02 Score=24.75 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=36.3
Q ss_pred EEeCCCHHHHHHHHhhCccccc--ccCCCCeeEEEEEeCCc----CCCCcEEEEEeeCCCceeeEEEEEEEEEeCCCCEE
Q 031759 11 VEIKAPASTVREYFCSKLHHVS--SACPDKVQSVDLLEGEW----GKAGSVIFGRYANEGKSDLSCKVIMEEIDYENNKI 84 (153)
Q Consensus 11 i~i~a~a~kvw~~~~~~~~~lp--k~~P~~v~s~~~~eGdg----~~~Gsir~~~~~~~~~~~~~~kErl~~~D~~~~~~ 84 (153)
.-+.++|||-=++++.+ ..+. +-|-+.|...-++++.+ ..-|+||.|... |. .+.|. .-.++..|
T Consensus 153 ~~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge----~l~~~---~ghtn~vY 223 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE----VLLEM---HGHTNFVY 223 (745)
T ss_pred cEEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-Cc----eeeee---eccceEEE
Confidence 34567777655555421 1111 22334455555554310 134899999993 43 34433 45777777
Q ss_pred EEE
Q 031759 85 TFK 87 (153)
Q Consensus 85 ~y~ 87 (153)
+++
T Consensus 224 sis 226 (745)
T KOG0301|consen 224 SIS 226 (745)
T ss_pred EEE
Confidence 777
No 82
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=20.87 E-value=2.3e+02 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=7.3
Q ss_pred eEEEEEEEEEec
Q 031759 98 KSFCCFFQVTPK 109 (153)
Q Consensus 98 ~~~~~t~~v~p~ 109 (153)
..|..++.+...
T Consensus 65 ~~y~l~v~a~D~ 76 (93)
T PF00028_consen 65 SSYQLTVRATDS 76 (93)
T ss_dssp SEEEEEEEEEET
T ss_pred CEEEEEEEEEEC
Confidence 556666666655
No 83
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=20.85 E-value=1.4e+02 Score=19.38 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=28.3
Q ss_pred EEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeC
Q 031759 9 AGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEG 47 (153)
Q Consensus 9 ~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eG 47 (153)
.+..|....+.||++++.-|....+--++.+-.+++--|
T Consensus 39 ~sT~l~G~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 39 YSTQLRGDEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp TEEEEECBHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred cEEEEECCHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 456678999999999996665555556666777776555
No 84
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.81 E-value=2e+02 Score=17.69 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=15.8
Q ss_pred EEEEEEEEEeCCCCEEEEE
Q 031759 69 SCKVIMEEIDYENNKITFK 87 (153)
Q Consensus 69 ~~kErl~~~D~~~~~~~y~ 87 (153)
.++=|+..+|+.++.++-+
T Consensus 52 ~v~~kV~~id~~~~~i~lS 70 (71)
T cd05696 52 THKARIIGYSPMDGLLQLS 70 (71)
T ss_pred EEEEEEEEEeCCCCEEEEe
Confidence 7788889999999987754
No 85
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.58 E-value=1.7e+02 Score=17.80 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=17.1
Q ss_pred eeCCCceeeEEEEEEEEEeCCCCEEE
Q 031759 60 YANEGKSDLSCKVIMEEIDYENNKIT 85 (153)
Q Consensus 60 ~~~~~~~~~~~kErl~~~D~~~~~~~ 85 (153)
|..|. .++=|+..+|++++++.
T Consensus 43 ~~~G~----~i~~kVi~id~~~~~i~ 64 (66)
T cd05695 43 YKEGQ----KVRARILYVDPSTKVVG 64 (66)
T ss_pred cCCCC----EEEEEEEEEeCCCCEEe
Confidence 45555 88889999999988764
No 86
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=20.33 E-value=4.1e+02 Score=20.44 Aligned_cols=115 Identities=8% Similarity=0.018 Sum_probs=68.2
Q ss_pred eEEEEEEeCCCHHHHHHHHhhCcccccccCCCCeeEEEEEeCCcCCCCcEEEEEeeCC----CceeeEEEEEEEEEeCCC
Q 031759 6 QVEAGVEIKAPASTVREYFCSKLHHVSSACPDKVQSVDLLEGEWGKAGSVIFGRYANE----GKSDLSCKVIMEEIDYEN 81 (153)
Q Consensus 6 ~~~~ei~i~a~a~kvw~~~~~~~~~lpk~~P~~v~s~~~~eGdg~~~Gsir~~~~~~~----~~~~~~~kErl~~~D~~~ 81 (153)
.+..+++++++++++...+-++ .++|.++ +.+.++++--+. .-..+-+... .+..+.+.-|.-..|..+
T Consensus 53 ~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~---~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDS---QTEIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCC---CceEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 4667889999999999999743 6899995 666677664211 1122222211 122214444444445555
Q ss_pred CEEEEEEEecc---cc-C--ceeEEEEEEEEEecC-CCeEEEEEEEEEcCCCC
Q 031759 82 NKITFKVIEGN---LL-D--QYKSFCCFFQVTPKG-EGSFVTWTLKYEKPNEN 127 (153)
Q Consensus 82 ~~~~y~v~eG~---~~-~--~y~~~~~t~~v~p~~-~gs~v~W~~~ye~~~~~ 127 (153)
..+........ ++ . ....+.+-+.++|.+ |+|.++..+..++.+..
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 55433333221 22 1 133456677888975 57999999998888663
No 87
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=20.32 E-value=1.6e+02 Score=17.05 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=9.4
Q ss_pred CcEEEEEeeCCC
Q 031759 53 GSVIFGRYANEG 64 (153)
Q Consensus 53 Gsir~~~~~~~~ 64 (153)
|++|.++|.++.
T Consensus 1 GAvR~~kFsP~~ 12 (43)
T PF10313_consen 1 GAVRCCKFSPEP 12 (43)
T ss_pred CCeEEEEeCCCC
Confidence 789999998543
Done!