Query 031760
Match_columns 153
No_of_seqs 117 out of 232
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_P 60S ribosomal protein L 100.0 3.2E-81 1.1E-85 512.0 10.2 134 1-134 1-134 (204)
2 4a17_L RPL15, ribosomal protei 100.0 4.7E-81 1.6E-85 511.2 10.1 134 1-134 1-134 (204)
3 3jyw_L 60S ribosomal protein L 100.0 1.2E-80 4.2E-85 505.1 7.0 133 2-134 1-133 (192)
4 1vq8_M 50S ribosomal protein L 100.0 5.7E-80 1.9E-84 501.7 9.4 132 1-134 2-133 (194)
5 1ffk_I Ribosomal protein L15E; 100.0 8.6E-80 2.9E-84 500.6 9.5 132 1-134 2-133 (194)
6 3j21_M 50S ribosomal protein L 100.0 1.4E-79 4.9E-84 499.4 9.8 132 1-134 1-132 (194)
7 1u07_A TONB protein; beta-hair 59.5 14 0.00047 24.5 4.3 35 34-71 4-38 (90)
8 2k9k_A TONB2; metal transport; 34.2 34 0.0012 23.2 3.1 32 37-71 22-53 (106)
9 1skh_A Major prion protein 2; 28.8 33 0.0011 20.4 1.9 14 138-151 10-23 (30)
10 3dxe_B Amyloid beta A4 protein 26.7 14 0.00047 22.7 0.0 10 123-132 23-32 (35)
11 4e9m_A Nucleotide-binding olig 22.3 23 0.00079 27.5 0.6 13 39-51 65-77 (144)
12 2i0f_A 6,7-dimethyl-8-ribityll 21.5 40 0.0014 26.0 1.7 28 81-112 109-136 (157)
No 1
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=100.00 E-value=3.2e-81 Score=512.02 Aligned_cols=134 Identities=83% Similarity=1.385 Sum_probs=132.7
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (153)
Q Consensus 1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~ 80 (153)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 3iz5_P 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (204)
T ss_dssp CCTHHHHHHHHHCTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHTTTCCCCSTTEEEEEEEEESSCCCCSCTTSCC
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
||||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 81 ~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL 134 (204)
T 3iz5_P 81 YGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 134 (204)
T ss_dssp CSCGGGCCSSSSCCSSCHHHHHHHHHHHHSTTEEEEEEEEEEECSSEEEEEEEE
T ss_pred ccCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEE
Confidence 999999999999999999999999999999999999999999999999999774
No 2
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=100.00 E-value=4.7e-81 Score=511.17 Aligned_cols=134 Identities=60% Similarity=1.084 Sum_probs=131.8
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (153)
Q Consensus 1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~ 80 (153)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+|
T Consensus 1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~ 80 (204)
T 4a17_L 1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIV 80 (204)
T ss_dssp -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCC
T ss_pred CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
||||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 81 ~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL 134 (204)
T 4a17_L 81 YGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVIL 134 (204)
T ss_dssp CSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEE
T ss_pred ccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEE
Confidence 999999999999999999999999999999999999999999999999999774
No 3
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=100.00 E-value=1.2e-80 Score=505.06 Aligned_cols=133 Identities=68% Similarity=1.136 Sum_probs=131.5
Q ss_pred chhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCccc
Q 031760 2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY 81 (153)
Q Consensus 2 gaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~~ 81 (153)
|||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+||
T Consensus 1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~ 80 (192)
T 3jyw_L 1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATY 80 (192)
T ss_dssp CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSC
T ss_pred CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 82 gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
|||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 81 gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL 133 (192)
T 3jyw_L 81 GKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVIL 133 (192)
T ss_dssp SSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEE
T ss_pred cCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999774
No 4
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=100.00 E-value=5.7e-80 Score=501.68 Aligned_cols=132 Identities=37% Similarity=0.552 Sum_probs=130.6
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (153)
Q Consensus 1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~ 80 (153)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1vq8_M 2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG- 80 (194)
T ss_dssp CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
|||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 81 -~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVIL 133 (194)
T 1vq8_M 81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVIL 133 (194)
T ss_dssp -CCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999764
No 5
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=100.00 E-value=8.6e-80 Score=500.62 Aligned_cols=132 Identities=37% Similarity=0.628 Sum_probs=130.8
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (153)
Q Consensus 1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~ 80 (153)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+
T Consensus 2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~- 80 (194)
T 1ffk_I 2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG- 80 (194)
T ss_pred ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
|||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 81 -~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVIL 133 (194)
T 1ffk_I 81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVIL 133 (194)
T ss_pred -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999875
No 6
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-79 Score=499.43 Aligned_cols=132 Identities=44% Similarity=0.753 Sum_probs=130.6
Q ss_pred CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760 1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV 80 (153)
Q Consensus 1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~ 80 (153)
||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+
T Consensus 1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~- 79 (194)
T 3j21_M 1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG- 79 (194)
T ss_dssp CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC-
T ss_pred CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF 134 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~ 134 (153)
|||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus 80 -~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL 132 (194)
T 3j21_M 80 -RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIM 132 (194)
T ss_dssp -CCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEE
T ss_pred -CCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999774
No 7
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=59.48 E-value=14 Score=24.55 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=28.1
Q ss_pred CceeEeCCCCcchhhhhccccccCceEEEEEEeeecCC
Q 031760 34 PSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGR 71 (153)
Q Consensus 34 ~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgr 71 (153)
|....-..|.-|..|++.|. +|-|++++.|..-|.
T Consensus 4 p~~l~~~~~~YP~~a~~~~~---~G~V~v~~~i~~~G~ 38 (90)
T 1u07_A 4 PRALSRNQPQYPARAQALRI---EGQVKVKFDVTPDGR 38 (90)
T ss_dssp CCEEECCCCCCCHHHHHHTC---CEEEEEEEEECTTSC
T ss_pred CcCcccCCCCCcHHHHHCCC---ceEEEEEEEECCCCC
Confidence 45555567899999999886 899999999986653
No 8
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=34.21 E-value=34 Score=23.20 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=25.5
Q ss_pred eEeCCCCcchhhhhccccccCceEEEEEEeeecCC
Q 031760 37 VRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGR 71 (153)
Q Consensus 37 ~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgr 71 (153)
.....|.-|..|++.|- +|.|++++.|..-|.
T Consensus 22 ~~~~~~~YP~~A~~~~~---eG~V~v~f~I~~~G~ 53 (106)
T 2k9k_A 22 LYRVEPVYPSRALKRGV---EGFVTLSFTIDTTGK 53 (106)
T ss_dssp SSCSSCCCCSHHHHHCC---CCEEEEEEEEETTTE
T ss_pred eccCCCCCCHHHHHcCC---eeEEEEEEEECCCCc
Confidence 33467888999998875 799999999987653
No 9
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=28.83 E-value=33 Score=20.40 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhcc
Q 031760 138 SLVLFVMTLFETGL 151 (153)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (153)
.|||||.|.-|.||
T Consensus 10 ilvLfva~wsdvgl 23 (30)
T 1skh_A 10 ILVLFVAMWSDVGL 23 (30)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHH
Confidence 47899999999887
No 10
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=26.71 E-value=14 Score=22.72 Aligned_cols=10 Identities=10% Similarity=-0.160 Sum_probs=8.3
Q ss_pred cCCchhHHHH
Q 031760 123 EVCSLISMSL 132 (153)
Q Consensus 123 eDg~yK~fe~ 132 (153)
|.-||||||-
T Consensus 23 ENPTYkyfE~ 32 (35)
T 3dxe_B 23 ENPTYKFFEQ 32 (35)
T ss_dssp ECHHHHHHHH
T ss_pred cCcHHHHHHh
Confidence 6679999985
No 11
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=22.31 E-value=23 Score=27.51 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=11.2
Q ss_pred eCCCCcchhhhhc
Q 031760 39 VTRPTRPDKARRL 51 (153)
Q Consensus 39 v~rPTR~dkARrL 51 (153)
.+.||++||||+|
T Consensus 65 ~~~~T~~dKaRrL 77 (144)
T 4e9m_A 65 CACPTQPDKVRKI 77 (144)
T ss_dssp HTSSSHHHHHHHH
T ss_pred hccCChHHHHHHH
Confidence 3489999999987
No 12
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=21.46 E-value=40 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.1
Q ss_pred cCCcccccceecccccchhHHHHHHhhcccCC
Q 031760 81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGG 112 (153)
Q Consensus 81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~n 112 (153)
++.|.-.|| |++. |.++ |+||+|-+.+|
T Consensus 109 ~~vPV~~GV--LT~~-~~eQ-A~~Rag~~~~n 136 (157)
T 2i0f_A 109 ESIAIGNGI--LTVE-NEEQ-AWVHARREDKD 136 (157)
T ss_dssp TTCCEEEEE--EEES-SHHH-HHHHHCTTTTC
T ss_pred cCCCEEEEE--eCCC-CHHH-HHHHhCccccc
Confidence 689999998 6666 5555 99999866554
Done!