Query 031762
Match_columns 153
No_of_seqs 51 out of 53
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 19.7 35 0.0012 19.8 0.8 11 27-37 4-14 (29)
2 2bn5_B U1 small nuclear ribonu 15.0 66 0.0023 17.9 1.2 13 33-45 9-22 (26)
3 3fbi_A Mediator of RNA polymer 13.6 56 0.0019 22.9 0.8 12 28-39 8-19 (84)
4 1g2b_A Spectrin alpha chain; c 13.4 31 0.0011 21.1 -0.5 9 143-151 53-61 (62)
5 1rr7_A Middle operon regulator 7.8 95 0.0032 22.6 0.3 10 107-116 63-72 (129)
6 1i1j_A Melanoma derived growth 7.7 65 0.0022 22.6 -0.7 7 145-151 59-65 (108)
7 2jmc_A Spectrin alpha chain, b 7.0 1.2E+02 0.0041 19.2 0.4 7 144-150 24-30 (77)
8 1awj_A ITK; transferase, regul 6.7 1.4E+02 0.0048 18.8 0.7 8 143-150 52-59 (77)
9 2lx7_A GAS-7, growth arrest-sp 6.7 97 0.0033 19.5 -0.2 8 144-151 37-44 (60)
10 1k1z_A VAV; SH3, proto-oncogen 6.6 98 0.0033 19.6 -0.2 8 143-150 51-58 (78)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=19.72 E-value=35 Score=19.75 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.6
Q ss_pred CcccccccCCC
Q 031762 27 SGIFGSIFSPP 37 (153)
Q Consensus 27 sgiF~SIFppp 37 (153)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 35899999975
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=15.02 E-value=66 Score=17.95 Aligned_cols=13 Identities=54% Similarity=1.150 Sum_probs=7.2
Q ss_pred ccC-CCccccCccc
Q 031762 33 IFS-PPSKVLGRES 45 (153)
Q Consensus 33 IFp-pps~v~gr~s 45 (153)
||+ ||+..+||.-
T Consensus 9 mfsvppppi~gr~n 22 (26)
T 2bn5_B 9 MFSVPPPPILGRGX 22 (26)
T ss_dssp CCSCCCCSCCCCC-
T ss_pred eecCCCCCcccCCc
Confidence 555 4455777753
No 3
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=13.60 E-value=56 Score=22.86 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=6.9
Q ss_pred cccccccCCCcc
Q 031762 28 GIFGSIFSPPSK 39 (153)
Q Consensus 28 giF~SIFppps~ 39 (153)
-.++|+||||+.
T Consensus 8 n~isSlfPpPPP 19 (84)
T 3fbi_A 8 NEVSSLYPPPPP 19 (84)
T ss_dssp ----CCSCCCCG
T ss_pred cccccCCCCCCc
Confidence 356799998874
No 4
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=13.39 E-value=31 Score=21.09 Aligned_cols=9 Identities=22% Similarity=1.110 Sum_probs=6.9
Q ss_pred CCccCCccc
Q 031762 143 RGNWWQGSL 151 (153)
Q Consensus 143 RGnWWqGSl 151 (153)
.++||+|-|
T Consensus 53 ~~~Ww~g~~ 61 (62)
T 1g2b_A 53 NKDWWKVEV 61 (62)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 478999865
No 5
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=7.81 E-value=95 Score=22.56 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=8.7
Q ss_pred eecCccccCC
Q 031762 107 YYGGQDVYSP 116 (153)
Q Consensus 107 yYGGqd~Ys~ 116 (153)
||||+.+|-|
T Consensus 63 ~~gG~~iYIP 72 (129)
T 1rr7_A 63 HLGGGQVYIP 72 (129)
T ss_dssp HHCSSCCCCC
T ss_pred HHCCeeEEee
Confidence 7899999983
No 6
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=7.66 E-value=65 Score=22.63 Aligned_cols=7 Identities=43% Similarity=1.161 Sum_probs=5.7
Q ss_pred ccCCccc
Q 031762 145 NWWQGSL 151 (153)
Q Consensus 145 nWWqGSl 151 (153)
|||+|.+
T Consensus 59 dWW~G~~ 65 (108)
T 1i1j_A 59 LFWGGSV 65 (108)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 6999864
No 7
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=6.96 E-value=1.2e+02 Score=19.23 Aligned_cols=7 Identities=29% Similarity=1.327 Sum_probs=5.7
Q ss_pred CccCCcc
Q 031762 144 GNWWQGS 150 (153)
Q Consensus 144 GnWWqGS 150 (153)
++||.|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 7899984
No 8
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=6.67 E-value=1.4e+02 Score=18.78 Aligned_cols=8 Identities=25% Similarity=0.995 Sum_probs=6.3
Q ss_pred CCccCCcc
Q 031762 143 RGNWWQGS 150 (153)
Q Consensus 143 RGnWWqGS 150 (153)
.++||+|.
T Consensus 52 ~~~Ww~~~ 59 (77)
T 1awj_A 52 EIHWWRVQ 59 (77)
T ss_dssp SSSBCCCC
T ss_pred CCCCEEEE
Confidence 36899985
No 9
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=6.66 E-value=97 Score=19.49 Aligned_cols=8 Identities=50% Similarity=1.739 Sum_probs=6.0
Q ss_pred CccCCccc
Q 031762 144 GNWWQGSL 151 (153)
Q Consensus 144 GnWWqGSl 151 (153)
.+||.|.+
T Consensus 37 ~~Ww~g~~ 44 (60)
T 2lx7_A 37 GGWWEGEK 44 (60)
T ss_dssp TSCEEEEC
T ss_pred CCeEEEEe
Confidence 57999864
No 10
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=6.63 E-value=98 Score=19.57 Aligned_cols=8 Identities=50% Similarity=1.635 Sum_probs=6.3
Q ss_pred CCccCCcc
Q 031762 143 RGNWWQGS 150 (153)
Q Consensus 143 RGnWWqGS 150 (153)
..+||+|.
T Consensus 51 ~~gWw~g~ 58 (78)
T 1k1z_A 51 EHNWWEGR 58 (78)
T ss_dssp SCSCEEEE
T ss_pred CCCeEEEE
Confidence 46899986
Done!