Query 031764
Match_columns 153
No_of_seqs 124 out of 177
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnj_A SLL1418 protein, putati 99.7 5.2E-22 1.8E-26 154.7 0.0 72 78-149 11-87 (170)
2 2xb3_A PSBP protein; photosynt 99.8 3.4E-20 1.2E-24 142.7 7.9 73 78-150 5-79 (165)
3 1v2b_A 23-kDa polypeptide of p 99.8 6.5E-20 2.2E-24 145.2 3.7 69 79-149 7-82 (177)
4 3hlz_A Uncharacterized protein 85.4 0.94 3.2E-05 37.9 4.6 46 82-127 5-50 (269)
5 1tu1_A Hypothetical protein PA 56.7 11 0.00039 27.5 3.9 44 81-129 3-48 (148)
6 1g6p_A Cold shock protein TMCS 25.6 31 0.0011 22.2 1.6 25 83-114 6-30 (66)
7 3a0j_A Cold shock protein; OB- 23.9 60 0.0021 21.2 2.9 24 82-112 6-29 (73)
8 3cam_A Cold-shock domain famil 23.6 49 0.0017 21.3 2.3 26 82-113 6-31 (67)
9 3i2z_B RNA chaperone, negative 21.2 68 0.0023 20.8 2.6 28 80-113 8-35 (71)
10 1c9o_A CSPB, cold-shock protei 20.3 45 0.0015 21.3 1.6 24 83-113 7-30 (66)
No 1
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.72 E-value=5.2e-22 Score=154.72 Aligned_cols=72 Identities=31% Similarity=0.637 Sum_probs=69.0
Q ss_pred ccCceeeecCCCceEEecCCCCcccccc----CccEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHH
Q 031764 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA----GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQA 149 (153)
Q Consensus 78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~----G~dv~F~D~~~~~eNVsV~VsPv~~-~sL~dfGsPeeVg~~L~~a 149 (153)
..||++|+|+.|||+|+||++|++++++ |+|++|+|+++.++||+|+|+|+++ ++|+|||+|+|||++|+++
T Consensus 11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~va~~l~~~ 87 (170)
T 2lnj_A 11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATDVGYRFMKT 87 (170)
Confidence 3699999999999999999999999988 9999999999999999999999986 9999999999999999987
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.81 E-value=3.4e-20 Score=142.73 Aligned_cols=73 Identities=37% Similarity=0.645 Sum_probs=68.8
Q ss_pred ccCceeeecCCCceEEecCCCCcccccc-CccEEeecCCCCCceeEEEEeeCCC-CCcccCCCHHHHHHHHHHHH
Q 031764 78 EMELQRYTDSNEGFTLLRPSSWIKVDKA-GATVLFEEANKGTNNLGVVVNPVRV-ASLGEFGTPQFVADKLIQAE 150 (153)
Q Consensus 78 ~~gf~~y~D~~dGYsflyP~gW~~v~~~-G~dv~F~D~~~~~eNVsV~VsPv~~-~sL~dfGsPeeVg~~L~~ae 150 (153)
..||++|.|+.+||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.+ ++|+|||+|++||++|+++.
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~va~~l~~~~ 79 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNI 79 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHHHHHHHHHHT
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHHHHHHHHHHh
Confidence 4599999999999999999999999998 9999999999999999999999984 99999999999999999864
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.78 E-value=6.5e-20 Score=145.16 Aligned_cols=69 Identities=30% Similarity=0.532 Sum_probs=61.2
Q ss_pred cCceeeecCCCceEEecCCCCcccc---ccCccEEeecCCCCCceeEEEEeeCCCCCcccCCCHHH----HHHHHHHH
Q 031764 79 MELQRYTDSNEGFTLLRPSSWIKVD---KAGATVLFEEANKGTNNLGVVVNPVRVASLGEFGTPQF----VADKLIQA 149 (153)
Q Consensus 79 ~gf~~y~D~~dGYsflyP~gW~~v~---~~G~dv~F~D~~~~~eNVsV~VsPv~~~sL~dfGsPee----Vg~~L~~a 149 (153)
.||++|. +|||+|+||++|++++ .+|+|++|+|+++.++||+|+|+|+++++|+|||+|++ ||++|.++
T Consensus 7 ~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~~~ 82 (177)
T 1v2b_A 7 TDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQ 82 (177)
T ss_dssp CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC---
T ss_pred CCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHHHH
Confidence 5999997 8999999999999765 45999999999999999999999999999999999999 57777664
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.39 E-value=0.94 Score=37.88 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=39.1
Q ss_pred eeeecCCCceEEecCCCCccccccCccEEeecCCCCCceeEEEEee
Q 031764 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGTNNLGVVVNP 127 (153)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~eNVsV~VsP 127 (153)
.-|..++.=|++.||.+|.++.....--+|-+|..=+-|..+.--.
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISayk 50 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK 50 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEecc
Confidence 4588889999999999999999887788899999999999665443
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=56.68 E-value=11 Score=27.53 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=26.8
Q ss_pred ceeeecCCCceEEecCCCCccccccCccEEeecCCCCC--ceeEEEEeeCC
Q 031764 81 LQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEEANKGT--NNLGVVVNPVR 129 (153)
Q Consensus 81 f~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~~~~~--eNVsV~VsPv~ 129 (153)
+..| ..+.++|..|.+|+.- ...|++-....+. -||.|...+..
T Consensus 3 m~~y--~~~Egsl~lP~gw~D~---t~nv~~~~~~~~~g~~~lvIsR~~~~ 48 (148)
T 1tu1_A 3 MTLY--RLHEADLEIPDAWQDQ---SINIFKLPASGPAREASFVISRDASQ 48 (148)
T ss_dssp EEEE--ECSSEEEEEETTSEEC---CBEEEEECCBTTBCCEEEEEEEECCC
T ss_pred CceE--EECCEEEeCCCCcEee---eEEEEEcCCCCCCCceEEEEEeccCC
Confidence 4567 4789999999999932 3455554433222 46655555554
No 6
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=25.57 E-value=31 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.516 Sum_probs=17.2
Q ss_pred eeecCCCceEEecCCCCccccccCccEEeecC
Q 031764 83 RYTDSNEGFTLLRPSSWIKVDKAGATVLFEEA 114 (153)
Q Consensus 83 ~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D~ 114 (153)
..-|...||-|+-|.+ |.|++||-.
T Consensus 6 k~fn~~kGfGFI~~~~-------g~dvFvH~s 30 (66)
T 1g6p_A 6 KWFDSKKGYGFITKDE-------GGDVFVHWS 30 (66)
T ss_dssp EEEETTTTEEEEEETT-------SCBCBBCSS
T ss_pred EEEECCCCEEEEecCC-------CceEEEEhH
Confidence 3446789999999874 466666543
No 7
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.94 E-value=60 Score=21.17 Aligned_cols=24 Identities=8% Similarity=0.426 Sum_probs=16.5
Q ss_pred eeeecCCCceEEecCCCCccccccCccEEee
Q 031764 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFE 112 (153)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~ 112 (153)
...-|...||-|+-|.+ |.||+||
T Consensus 6 Vk~fn~~kGfGFI~~~~-------g~dvFvH 29 (73)
T 3a0j_A 6 VKWFNAEKGYGFIEREG-------DTDVFVH 29 (73)
T ss_dssp EEEEETTTTEEEEECTT-------SCCEEEE
T ss_pred EEEEECCCCEEEEecCC-------CCcEEEE
Confidence 34456789999999874 3555555
No 8
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=23.56 E-value=49 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.478 Sum_probs=18.0
Q ss_pred eeeecCCCceEEecCCCCccccccCccEEeec
Q 031764 82 QRYTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (153)
Q Consensus 82 ~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (153)
-..-|...||-|+-|.+ .|.||+||-
T Consensus 6 Vk~fn~~kGfGFI~~~~------gg~dvFvH~ 31 (67)
T 3cam_A 6 VKWFNDAKGFGFITPDE------GGEDLFAHF 31 (67)
T ss_dssp EEEEETTTTEEEEEETT------SCCCEEEEG
T ss_pred EEEEECCCCeEEEecCC------CCccEEEEH
Confidence 34456789999999864 356676653
No 9
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=21.18 E-value=68 Score=20.81 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=19.8
Q ss_pred CceeeecCCCceEEecCCCCccccccCccEEeec
Q 031764 80 ELQRYTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (153)
Q Consensus 80 gf~~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (153)
|-...-|...||-|+-|.+ .|.||+||=
T Consensus 8 G~Vk~fn~~kGfGFI~~~~------g~~dvFvH~ 35 (71)
T 3i2z_B 8 GNVKWFNESKGFGFITPED------GSKDVFVHF 35 (71)
T ss_dssp EEEEEEETTTTEEEEEETT------CCCCEEEEG
T ss_pred EEEEEEECCCCcEEEecCC------CCccEEEEh
Confidence 5455567789999998854 347777763
No 10
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=20.26 E-value=45 Score=21.29 Aligned_cols=24 Identities=13% Similarity=0.475 Sum_probs=16.7
Q ss_pred eeecCCCceEEecCCCCccccccCccEEeec
Q 031764 83 RYTDSNEGFTLLRPSSWIKVDKAGATVLFEE 113 (153)
Q Consensus 83 ~y~D~~dGYsflyP~gW~~v~~~G~dv~F~D 113 (153)
..-|...||-|+-|.+ |.||+||-
T Consensus 7 k~fn~~kGfGFI~~~~-------g~dvFvH~ 30 (66)
T 1c9o_A 7 KWFNNEKGYGFIEVEG-------GSDVFVHF 30 (66)
T ss_dssp EEEETTTTEEEEEETT-------EEEEEEEG
T ss_pred EEEECCCCeEEEecCC-------CccEEEEH
Confidence 3446788999998874 35666654
Done!