BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031768
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 91 VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
VSVDM+I+++S AK+ +++ IT VL Q + T V + NKATG++IA+GRH+
Sbjct: 82 VSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 91 VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
VSVDM+I+++S AK+ +++ IT VL Q + T V + NKATG++IA+GRH+
Sbjct: 87 VSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 140
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 91 VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
VSVD +I++ S AK+ +++ IT VL Q + T V + NKATG++IA+GRH+
Sbjct: 82 VSVDXNITYXSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 91 VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
VSVD +I++ S AK+ +E+ IT +L Q + V + NK TG++IA+GRH+
Sbjct: 82 VSVDXNITYXSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHT 135
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 9 ELNQEESDSVARLAIHPYRVGATEFSFYED 38
ELN E S S +L P R+ T F+ YED
Sbjct: 67 ELNYEPSISADKLTWTPTRLAKTVFNTYED 96
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The
3d Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The
3d Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The
3d Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The
3d Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The
3d Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 9 ELNQEESDSVARLAIHPYRVGATEFSFYED 38
ELN E S S +L P R+ T F+ YED
Sbjct: 39 ELNYEPSISADKLTWTPTRLAKTVFNTYED 68
>pdb|3D33|A Chain A, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
pdb|3D33|B Chain B, Crystal Structure Of A Duf3244 Family Protein With An
Immunoglobulin- Like Beta-Sandwich Fold (Bvu_0276) From
Bacteroides Vulgatus Atcc 8482 At 1.70 A Resolution
Length = 108
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 74 VDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGY 122
D G VVY +P S ++IS + +LEITG G GY
Sbjct: 56 TDXAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTPSGHLTGY 104
>pdb|3K6G|A Chain A, Crystal Structure Of Rap1 And Trf2 Complex
pdb|3K6G|B Chain B, Crystal Structure Of Rap1 And Trf2 Complex
pdb|3K6G|C Chain C, Crystal Structure Of Rap1 And Trf2 Complex
Length = 111
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 76 EVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVL--GQRG-GY 122
EVG A+ + L K ++D+S + K + ELE T L GQR GY
Sbjct: 9 EVGAAIKIIRQLXEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGY 58
>pdb|3O7M|A Chain A, 1.98 Angstrom Resolution Crystal Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-2)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3O7M|B Chain B, 1.98 Angstrom Resolution Crystal Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-2)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3O7M|C Chain C, 1.98 Angstrom Resolution Crystal Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-2)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3O7M|D Chain D, 1.98 Angstrom Resolution Crystal Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-2)
From Bacillus Anthracis Str. 'ames Ancestor'
Length = 186
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 77 VGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRV 115
+ G+ V+ L + D++I F+S + ++ E TG+V
Sbjct: 44 LKGSFVFAADLIRHIKNDVTIDFISASSYGNQTETTGKV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,847,663
Number of Sequences: 62578
Number of extensions: 128611
Number of successful extensions: 378
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 11
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)