BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031768
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R833|ACO13_PONAB Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1
Length = 140
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 51 PGLVSCTFK------DRNGNLANGAIANLVDEVGG-AVVYVE-GLPMKVSVDMSISFVST 102
PG V C K + G L G A LVD + A++ E G P VSVDM+I+++S
Sbjct: 35 PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAP-GVSVDMNITYMSP 93
Query: 103 AKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
AK+ +++ IT VL Q + T V + NKATG++IA+GRH+
Sbjct: 94 AKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
>sp|Q9NPJ3|ACO13_HUMAN Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN=ACOT13 PE=1 SV=1
Length = 140
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 51 PGLVSCTFK------DRNGNLANGAIANLVDEVGG-AVVYVE-GLPMKVSVDMSISFVST 102
PG V C K + G L G A LVD + A++ E G P VSVDM+I+++S
Sbjct: 35 PGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAP-GVSVDMNITYMSP 93
Query: 103 AKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
AK+ +++ IT VL Q + T V + NKATG++IA+GRH+
Sbjct: 94 AKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
>sp|Q9CQR4|ACO13_MOUSE Acyl-coenzyme A thioesterase 13 OS=Mus musculus GN=Acot13 PE=1 SV=1
Length = 140
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 38 DFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGG-AVVYVE-GLPM 89
D L + + P + C K ++ G L G A LVD + A++ E G P
Sbjct: 22 DRVLEKVTLVSAAPEKLICEMKVEEQHTNKLGTLHGGLTATLVDSISTMALMCTERGAP- 80
Query: 90 KVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144
VSVDM+I+++S AK+ +E+ IT +L Q + V + NK TG++IA+GRH+
Sbjct: 81 GVSVDMNITYMSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHT 135
>sp|P87304|YB22_SCHPO Putative esterase C31F10.02 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC31F10.02 PE=3 SV=1
Length = 161
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 41/139 (29%)
Query: 36 YEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEGLPM 89
++ + I++ PG V C+ K +R GNL G IA L D G + GL +
Sbjct: 27 FDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGGCIAALTDLGGSLALASRGLFI 86
Query: 90 K-VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNK---------------- 132
VS+DM+ +F+ Q GG G+ +L+ K
Sbjct: 87 SGVSIDMNQTFL-----------------QSGGTLGSSILLHAKCDRLGSNIAFTSVDFL 129
Query: 133 -ATGEVIAEGRHSLFGRQP 150
++ EV A+GRH+ F R
Sbjct: 130 TSSNEVFAKGRHTKFVRNA 148
>sp|P34419|YLZ6_CAEEL Putative esterase F42H10.6 OS=Caenorhabditis elegans GN=F42H10.6
PE=1 SV=2
Length = 169
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 60 DRNGNLANGAIANLVDEVG----GAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRV 115
+ G L G A L D + G V +G+ SV++++S++ KV D LEIT V
Sbjct: 66 NSKGTLHGGQTATLTDVITARAVGVTVKDKGM---ASVELAVSYLLPVKVGDVLEITAHV 122
Query: 116 LGQRGGYSGTIVLMRNKATGEVIAEGRHSL--FGRQP 150
L + T R K+ G++ A+G+H+L QP
Sbjct: 123 LKVGRTMAFTDCEFRRKSDGKMSAKGKHTLAFLPNQP 159
>sp|Q5FLZ3|GCP_LACAC Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56
/ N2 / NCFM) GN=gcp PE=3 SV=1
Length = 349
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 55 SCTFKDRNG---NLANGAIANLVDEVGGA--VVYVEGLPMKVSVDMSISFVSTAKVNDEL 109
+C++KD + G + L+ V A V G+P+ + VD + + A++ DE+
Sbjct: 73 NCSWKDIDAIAVTYGPGLVGALLIGVSAAKAVSMATGIPL-IGVDHIMGHIMAAQLKDEI 131
Query: 110 EITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPSKM 153
E L GG++ IVL+++ E+I + R G K+
Sbjct: 132 EYPAIALQVSGGHT-EIVLLKDPTHFEIIGDTRDDAAGEAYDKI 174
>sp|Q045T6|GCP_LACGA Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
GN=gcp PE=3 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 86 GLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145
G+P+ + VD + + A++ DE+E L GG++ IVLM++ E++ + R
Sbjct: 108 GIPL-IGVDHIMGHIMAAQLKDEIEYPALALQVSGGHT-EIVLMKDPIHFEIVGDTRDDA 165
Query: 146 FGRQPSKM 153
G K+
Sbjct: 166 AGEAYDKI 173
>sp|Q74KY8|GCP_LACJO Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=gcp PE=3 SV=1
Length = 348
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 86 GLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145
G+P+ + VD + + A++ DE+E L GG++ IVLM++ E++ + R
Sbjct: 108 GIPL-IGVDHIMGHIMAAQLKDEIEYPALALQVSGGHT-EIVLMKDPIHFEIVGDTRDDA 165
Query: 146 FGRQPSKM 153
G K+
Sbjct: 166 AGEAYDKI 173
>sp|P44018|Y585_HAEIN Putative uncharacterized transporter HI_0585 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0585 PE=5 SV=1
Length = 279
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 40 ALRGIRVDRVEPGLVSCTFKDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISF 99
A+ GI V R+ P ++ F + GN + AN++ + A V+V GL +VD +ISF
Sbjct: 118 AIYGIIVTRISPVKITEEFFNGMGN----SYANVLGIIIAASVFVAGLKSTGAVDAAISF 173
Query: 100 V 100
+
Sbjct: 174 L 174
>sp|Q8NMB8|ISPD_CORGL 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM
20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=ispD PE=3
SV=1
Length = 256
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 58 FKDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEIT 112
F D N A+L++ G VV V+G PM V I + ++ DE E T
Sbjct: 195 FADPNPGFIPTDDASLMEWYGADVVCVQGDPMAFKVTTPIDMMLAQRITDEAEPT 249
>sp|A4QH60|ISPD_CORGB 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Corynebacterium glutamicum (strain R) GN=ispD PE=3
SV=1
Length = 256
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 58 FKDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEIT 112
F D N A+L++ G VV V+G PM V I + ++ DE E T
Sbjct: 195 FADPNPGFIPTDDASLMEWYGADVVCVQGDPMAFKVTTPIDMMLAQRITDEAEPT 249
>sp|A5GNX9|RBFA_SYNPW Ribosome-binding factor A OS=Synechococcus sp. (strain WH7803)
GN=rbfA PE=3 SV=1
Length = 140
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 27 RVGATEFSFYEDFALRGIRVDRVEPGLVSCTFKDRNGNLANGAI--ANLVDEVGGAVVYV 84
RV A + + GIR DRV GL+S T D +G+L + I + L D G A V +
Sbjct: 9 RVAALIRKETSELLMHGIRDDRVHQGLISITQVDVSGDLQHCKIFVSVLADPEGRAQV-M 67
Query: 85 EGL 87
EGL
Sbjct: 68 EGL 70
>sp|Q566R0|THEM4_RAT Acyl-coenzyme A thioesterase THEM4 OS=Rattus norvegicus GN=Them4
PE=2 SV=1
Length = 230
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 63 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM----SISFVSTAKVNDELE-ITGRVL 116
G + GAIA ++D G + EG+ M ++++ I +S VN +L+ I GR L
Sbjct: 140 GFVHGGAIATIIDITAGMCAFSEGIVMTANLNIDYKKPIPLLSVVVVNSQLQKIEGRKL 198
>sp|P80065|INVB_DAUCA Beta-fructofuranosidase, soluble isoenzyme I OS=Daucus carota
GN=INV*DC4 PE=1 SV=2
Length = 661
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 81 VVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATG 135
V++ E L M++ VD SI V + IT RV R YS V + N ATG
Sbjct: 584 VLHGESLSMRLLVDHSI--VESFAQGGRTVITSRVYPTRAIYSAARVFLFNNATG 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,083,864
Number of Sequences: 539616
Number of extensions: 2144213
Number of successful extensions: 5629
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5613
Number of HSP's gapped (non-prelim): 37
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)