Query 031768
Match_columns 153
No_of_seqs 211 out of 1144
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:04:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 2.4E-27 5.2E-32 174.4 16.9 112 32-148 17-136 (136)
2 KOG3328 HGG motif-containing t 100.0 2.6E-27 5.5E-32 174.3 14.0 119 33-153 20-145 (148)
3 PRK10254 thioesterase; Provisi 100.0 1.4E-26 3E-31 170.6 17.1 112 32-148 17-136 (137)
4 PLN02322 acyl-CoA thioesterase 99.9 8.9E-26 1.9E-30 169.1 17.3 112 33-147 10-133 (154)
5 PRK11688 hypothetical protein; 99.9 6.7E-26 1.5E-30 169.4 15.8 111 32-147 20-153 (154)
6 TIGR00369 unchar_dom_1 unchara 99.9 3.3E-25 7.2E-30 157.9 16.1 109 34-147 1-117 (117)
7 TIGR02286 PaaD phenylacetic ac 99.9 7E-25 1.5E-29 155.8 17.3 106 41-148 3-114 (114)
8 COG2050 PaaI HGG motif-contain 99.9 4.1E-25 8.9E-30 162.7 16.6 117 31-151 16-140 (141)
9 TIGR02447 yiiD_Cterm thioester 99.8 6E-20 1.3E-24 135.2 14.9 112 31-149 4-138 (138)
10 cd03443 PaaI_thioesterase PaaI 99.8 3.9E-19 8.5E-24 124.0 16.1 102 43-146 3-112 (113)
11 PF03061 4HBT: Thioesterase su 99.7 5.1E-16 1.1E-20 101.7 11.4 77 62-139 1-79 (79)
12 cd03442 BFIT_BACH Brown fat-in 99.7 3.6E-15 7.7E-20 105.2 15.4 100 50-149 4-114 (123)
13 cd00556 Thioesterase_II Thioes 99.7 6.7E-16 1.4E-20 105.5 10.2 84 62-146 14-98 (99)
14 PF14539 DUF4442: Domain of un 99.6 3.6E-15 7.7E-20 108.9 12.6 109 33-147 13-132 (132)
15 PRK10694 acyl-CoA esterase; Pr 99.6 1.3E-13 2.8E-18 101.1 14.9 89 60-148 24-120 (133)
16 PRK04424 fatty acid biosynthes 99.5 3.1E-12 6.8E-17 98.5 16.8 98 45-147 76-181 (185)
17 COG1607 Acyl-CoA hydrolase [Li 99.5 1.2E-12 2.7E-17 98.2 13.5 89 60-148 26-119 (157)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.3 1.8E-10 3.8E-15 78.2 13.4 87 60-147 13-108 (110)
19 cd03440 hot_dog The hotdog fol 99.1 6.2E-09 1.3E-13 66.4 13.4 85 60-145 13-99 (100)
20 KOG4781 Uncharacterized conser 99.1 7.3E-10 1.6E-14 87.3 9.1 84 48-131 121-211 (237)
21 PLN02647 acyl-CoA thioesterase 99.1 3.7E-09 8.1E-14 90.9 13.1 90 60-149 106-210 (437)
22 PLN02647 acyl-CoA thioesterase 99.0 7E-09 1.5E-13 89.2 13.1 90 60-149 303-402 (437)
23 cd03445 Thioesterase_II_repeat 98.9 2.7E-08 5.8E-13 68.6 11.4 79 62-146 15-93 (94)
24 PF13622 4HBT_3: Thioesterase- 98.9 3E-08 6.5E-13 78.6 13.2 82 62-149 9-90 (255)
25 cd03449 R_hydratase (R)-hydrat 98.9 9.4E-08 2E-12 67.8 12.7 81 62-146 45-127 (128)
26 PF09500 YiiD_Cterm: Putative 98.8 3.4E-07 7.4E-12 68.0 14.8 104 41-148 17-143 (144)
27 PRK10800 acyl-CoA thioesterase 98.7 1.8E-06 3.9E-11 62.0 15.5 94 54-148 7-111 (130)
28 TIGR02799 thio_ybgC tol-pal sy 98.7 2.2E-06 4.8E-11 60.7 15.2 93 54-148 5-109 (126)
29 TIGR00051 acyl-CoA thioester h 98.6 3.9E-06 8.4E-11 58.3 13.5 93 55-148 3-107 (117)
30 PRK00006 fabZ (3R)-hydroxymyri 98.5 4E-05 8.8E-10 56.2 17.1 85 62-148 57-145 (147)
31 cd01288 FabZ FabZ is a 17kD be 98.4 6.6E-05 1.4E-09 53.4 16.3 83 63-147 43-130 (131)
32 cd03455 SAV4209 SAV4209 is a S 98.4 1.2E-05 2.5E-10 57.4 11.5 78 63-145 44-122 (123)
33 COG0824 FcbC Predicted thioest 98.4 4.2E-05 9.2E-10 56.0 14.5 86 60-147 18-112 (137)
34 cd03441 R_hydratase_like (R)-h 98.3 1.4E-05 3E-10 56.2 11.5 81 61-144 41-125 (127)
35 TIGR00189 tesB acyl-CoA thioes 98.3 6.5E-06 1.4E-10 66.1 10.6 78 63-146 21-98 (271)
36 cd03451 FkbR2 FkbR2 is a Strep 98.3 1.3E-05 2.7E-10 58.4 9.9 85 62-150 53-145 (146)
37 PF13279 4HBT_2: Thioesterase- 98.2 0.00016 3.5E-09 50.7 14.6 87 60-147 7-103 (121)
38 cd03453 SAV4209_like SAV4209_l 98.2 4.3E-05 9.3E-10 54.8 11.6 78 62-144 44-125 (127)
39 cd03446 MaoC_like MoaC_like 98.2 2.3E-05 5E-10 56.6 9.8 80 63-146 51-139 (140)
40 cd03447 FAS_MaoC FAS_MaoC, the 98.2 9.8E-05 2.1E-09 53.3 12.7 82 62-145 42-123 (126)
41 cd03454 YdeM YdeM is a Bacillu 98.0 9.4E-05 2E-09 53.6 10.2 82 64-147 50-139 (140)
42 PRK07531 bifunctional 3-hydrox 98.0 0.00041 8.9E-09 60.8 15.6 88 60-148 358-453 (495)
43 PRK13692 (3R)-hydroxyacyl-ACP 98.0 0.00011 2.4E-09 55.2 10.4 59 90-149 84-146 (159)
44 PRK10526 acyl-CoA thioesterase 98.0 0.00011 2.4E-09 60.0 11.1 99 44-148 12-111 (286)
45 cd03452 MaoC_C MaoC_C The C-t 98.0 0.00017 3.6E-09 52.9 10.7 80 63-148 51-139 (142)
46 cd01289 FabA_like Domain of un 98.0 0.0024 5.1E-08 46.7 16.7 55 91-148 81-137 (138)
47 COG4109 Predicted transcriptio 97.9 0.0001 2.3E-09 61.9 10.4 107 36-145 318-428 (432)
48 PLN02868 acyl-CoA thioesterase 97.9 8.7E-05 1.9E-09 63.4 10.1 100 43-148 135-237 (413)
49 cd00493 FabA_FabZ FabA/Z, beta 97.9 0.0033 7.1E-08 44.4 16.3 50 92-143 78-127 (131)
50 TIGR01750 fabZ beta-hydroxyacy 97.9 0.0024 5.3E-08 46.2 15.6 49 96-146 91-139 (140)
51 PRK08190 bifunctional enoyl-Co 97.9 0.00033 7.2E-09 61.0 12.9 82 64-149 60-143 (466)
52 PRK13691 (3R)-hydroxyacyl-ACP 97.9 0.00054 1.2E-08 51.9 12.2 58 91-149 85-146 (166)
53 cd03444 Thioesterase_II_repeat 97.8 0.00055 1.2E-08 47.8 11.1 80 64-144 16-101 (104)
54 COG5496 Predicted thioesterase 97.8 0.00078 1.7E-08 48.9 11.3 91 60-152 26-118 (130)
55 TIGR00189 tesB acyl-CoA thioes 97.7 0.00087 1.9E-08 53.8 11.2 81 63-144 181-267 (271)
56 PF13622 4HBT_3: Thioesterase- 97.6 0.00065 1.4E-08 53.7 9.8 77 70-147 175-255 (255)
57 PRK13188 bifunctional UDP-3-O- 97.6 0.0093 2E-07 52.1 17.5 100 48-149 344-461 (464)
58 KOG2763 Acyl-CoA thioesterase 97.5 0.00047 1E-08 58.1 8.0 70 60-130 212-283 (357)
59 PF07977 FabA: FabA-like domai 97.5 0.015 3.3E-07 42.1 14.7 79 62-142 47-138 (138)
60 PLN02370 acyl-ACP thioesterase 97.4 0.041 8.9E-07 47.6 18.5 89 60-148 152-255 (419)
61 COG0764 FabA 3-hydroxymyristoy 97.4 0.0071 1.5E-07 45.1 12.0 57 90-149 88-145 (147)
62 PF01575 MaoC_dehydratas: MaoC 97.2 0.0026 5.6E-08 45.2 8.0 56 61-118 49-104 (122)
63 PRK13693 (3R)-hydroxyacyl-ACP 97.1 0.015 3.3E-07 42.7 11.6 80 62-146 54-140 (142)
64 PRK10526 acyl-CoA thioesterase 97.1 0.01 2.2E-07 48.5 11.3 85 63-148 192-283 (286)
65 PF13452 MaoC_dehydrat_N: N-te 97.0 0.0037 7.9E-08 44.7 7.2 51 89-140 74-131 (132)
66 cd03450 NodN NodN (nodulation 97.0 0.013 2.9E-07 43.5 10.4 82 63-144 57-144 (149)
67 COG2030 MaoC Acyl dehydratase 96.9 0.02 4.4E-07 42.8 10.9 82 64-149 69-156 (159)
68 cd01287 FabA FabA, beta-hydrox 96.9 0.11 2.4E-06 38.7 15.1 47 96-144 92-143 (150)
69 KOG3016 Acyl-CoA thioesterase 96.8 0.02 4.4E-07 47.0 10.7 103 44-152 14-121 (294)
70 cd03448 HDE_HSD HDE_HSD The R 96.8 0.025 5.3E-07 40.6 10.0 73 62-141 44-116 (122)
71 COG1946 TesB Acyl-CoA thioeste 96.7 0.0072 1.6E-07 49.6 7.4 86 63-149 192-284 (289)
72 TIGR02278 PaaN-DH phenylacetic 96.5 0.016 3.5E-07 52.7 8.8 81 64-147 575-661 (663)
73 PLN02868 acyl-CoA thioesterase 96.4 0.024 5.2E-07 48.5 8.7 80 63-143 325-409 (413)
74 PRK11563 bifunctional aldehyde 96.2 0.025 5.3E-07 51.5 8.4 80 64-147 587-673 (675)
75 PLN02864 enoyl-CoA hydratase 96.0 0.18 3.9E-06 41.8 11.8 78 62-146 227-304 (310)
76 PF01643 Acyl-ACP_TE: Acyl-ACP 95.8 0.78 1.7E-05 36.8 14.4 90 60-149 16-120 (261)
77 PF02551 Acyl_CoA_thio: Acyl-C 95.7 0.097 2.1E-06 38.3 8.2 78 65-142 46-127 (131)
78 PLN02864 enoyl-CoA hydratase 95.6 0.13 2.9E-06 42.6 9.6 61 90-150 94-158 (310)
79 COG1946 TesB Acyl-CoA thioeste 95.5 0.078 1.7E-06 43.6 7.7 100 44-149 12-112 (289)
80 TIGR01749 fabA beta-hydroxyacy 94.1 2 4.3E-05 32.6 15.9 49 91-142 104-156 (169)
81 PRK05174 3-hydroxydecanoyl-(ac 93.4 2.7 5.9E-05 31.9 16.7 45 96-142 111-159 (172)
82 KOG2763 Acyl-CoA thioesterase 93.2 1.6 3.4E-05 37.1 10.7 90 60-149 21-126 (357)
83 KOG3016 Acyl-CoA thioesterase 93.1 0.41 8.8E-06 39.5 6.9 79 62-141 207-291 (294)
84 PF14765 PS-DH: Polyketide syn 92.0 4.3 9.4E-05 32.2 11.6 97 42-146 174-286 (295)
85 PF03756 AfsA: A-factor biosyn 89.7 5.7 0.00012 28.2 14.3 55 90-146 72-131 (132)
86 PF01643 Acyl-ACP_TE: Acyl-ACP 87.5 5.5 0.00012 31.9 8.8 81 60-145 178-259 (261)
87 COG3884 FatA Acyl-ACP thioeste 78.5 20 0.00044 28.9 8.4 57 90-148 56-112 (250)
88 PF11684 DUF3280: Protein of u 62.9 27 0.00058 25.7 5.6 41 105-145 79-119 (140)
89 TIGR02813 omega_3_PfaA polyket 59.2 35 0.00077 36.3 7.4 75 71-147 2493-2572(2582)
90 TIGR00074 hypC_hupF hydrogenas 55.3 23 0.0005 23.4 3.7 24 90-113 23-46 (76)
91 COG3884 FatA Acyl-ACP thioeste 55.2 1.1E+02 0.0024 24.7 8.5 60 60-123 165-224 (250)
92 PF01835 A2M_N: MG2 domain; I 52.6 65 0.0014 21.2 6.6 42 101-143 8-55 (99)
93 PLN02370 acyl-ACP thioesterase 52.0 95 0.0021 27.1 7.9 84 60-148 314-403 (419)
94 KOG1206 Peroxisomal multifunct 51.4 11 0.00023 30.6 1.9 66 64-139 193-258 (272)
95 PF08496 Peptidase_S49_N: Pept 40.6 22 0.00048 26.7 2.0 18 50-67 130-147 (155)
96 PF10648 Gmad2: Immunoglobulin 38.5 1E+02 0.0023 20.6 5.0 44 96-144 2-49 (88)
97 COG3777 Uncharacterized conser 32.2 1E+02 0.0022 25.3 4.6 73 60-143 198-271 (273)
98 PF09252 Feld-I_B: Allergen Fe 31.6 22 0.00047 23.0 0.7 16 1-16 36-51 (67)
99 PRK10409 hydrogenase assembly 29.3 97 0.0021 21.1 3.6 24 90-113 23-52 (90)
100 cd04316 ND_PkAspRS_like_N ND_P 28.2 1.6E+02 0.0034 20.0 4.7 36 99-137 5-42 (108)
101 PF13313 DUF4082: Domain of un 28.0 2.6E+02 0.0056 20.9 6.3 50 91-144 17-66 (149)
102 PF11974 MG1: Alpha-2-macroglo 27.7 1.8E+02 0.0039 19.7 4.8 33 109-142 15-48 (97)
103 PF01455 HupF_HypC: HupF/HypC 27.2 29 0.00062 22.3 0.7 24 90-113 25-48 (68)
104 cd04317 EcAspRS_like_N EcAspRS 26.7 1.6E+02 0.0035 20.7 4.7 39 96-137 4-44 (135)
105 PTZ00437 glutaminyl-tRNA synth 24.9 1.1E+02 0.0023 27.9 4.0 31 49-79 47-79 (574)
106 PLN03233 putative glutamate-tR 24.6 83 0.0018 28.3 3.3 28 50-77 8-37 (523)
107 PF04052 TolB_N: TolB amino-te 24.4 1.9E+02 0.0041 19.3 4.5 41 95-136 63-103 (105)
108 PF04775 Bile_Hydr_Trans: Acyl 22.9 2.8E+02 0.0061 19.6 6.0 42 93-137 5-46 (126)
109 smart00634 BID_1 Bacterial Ig- 22.0 1.2E+02 0.0027 19.9 3.1 10 122-131 19-28 (92)
110 PF11141 DUF2914: Protein of u 21.8 1.9E+02 0.004 18.2 3.7 24 120-144 41-64 (66)
111 PRK04156 gltX glutamyl-tRNA sy 21.5 1.5E+02 0.0033 26.9 4.4 30 50-79 98-129 (567)
112 PF00924 MS_channel: Mechanose 21.4 2.7E+02 0.0058 20.7 5.2 40 95-139 53-95 (206)
113 PF11138 DUF2911: Protein of u 20.8 2.7E+02 0.0059 20.6 4.9 58 92-151 12-76 (145)
114 TIGR00463 gltX_arch glutamyl-t 20.8 1.5E+02 0.0034 26.8 4.2 30 50-79 90-121 (560)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.96 E-value=2.4e-27 Score=174.41 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=100.6
Q ss_pred CCCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcC--CCeeEEEEEEEEeeeCC
Q 031768 32 EFSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTA 103 (153)
Q Consensus 32 ~~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~--~~~~vT~~l~i~fl~pa 103 (153)
+.||.. ++|+++.++++|+++++++ |+.|.+|||++++|+|.++++++.+.. ....+|+++++||++|+
T Consensus 17 ~~~~~~---~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~ 93 (136)
T PRK10293 17 EGNMVG---LLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSA 93 (136)
T ss_pred cccHHH---hcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEeccc
Confidence 367775 5599999999999999999 999999999999999999998776542 23579999999999999
Q ss_pred CCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 104 KVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 104 ~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
+.| .|+++|+++|.||++++++++++|+ +|+++|.+++|+++.
T Consensus 94 ~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 94 REG-RVRGVCKPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred CCc-eEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 987 6999999999999999999999997 899999999999873
No 2
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.95 E-value=2.6e-27 Score=174.33 Aligned_cols=119 Identities=42% Similarity=0.609 Sum_probs=108.4
Q ss_pred CCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHH-hcCCCeeEEEEEEEEeeeCCCC
Q 031768 33 FSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVY-VEGLPMKVSVDMSISFVSTAKV 105 (153)
Q Consensus 33 ~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~-~~~~~~~vT~~l~i~fl~pa~~ 105 (153)
+.|.++ +.++++...+||+++|+|+ |+.+++|||++|+|+|..+++|+. +.+.++.|++||+++||+|+++
T Consensus 20 ~~Fd~~--~~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~Akl 97 (148)
T KOG3328|consen 20 FGFDRV--LNNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKL 97 (148)
T ss_pred cchhhh--cCceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCC
Confidence 445654 4799999999999999999 999999999999999999998654 4455578999999999999999
Q ss_pred CCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEecCCCC
Q 031768 106 NDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPSKM 153 (153)
Q Consensus 106 g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~~~k~ 153 (153)
|+.|++++.++|.||.++|++|+++.+.+|+++|.+++++|+.|.+++
T Consensus 98 Ge~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 98 GEELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred CCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 999999999999999999999999998889999999999999998874
No 3
>PRK10254 thioesterase; Provisional
Probab=99.95 E-value=1.4e-26 Score=170.60 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred CCCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhc--CCCeeEEEEEEEEeeeCC
Q 031768 32 EFSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVE--GLPMKVSVDMSISFVSTA 103 (153)
Q Consensus 32 ~~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~--~~~~~vT~~l~i~fl~pa 103 (153)
++||.. ..|+++.++++|+++++++ |+.|++|||++++|+|.++++|+.+. .....+|+++++|||+|+
T Consensus 17 ~~~~~~---~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~ 93 (137)
T PRK10254 17 DNTMVA---HLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPV 93 (137)
T ss_pred ccchHH---hhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccC
Confidence 367775 4599999999999999999 99999999999999999999987653 233579999999999999
Q ss_pred CCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 104 KVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 104 ~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
+.| .|+++|+++|.||++.+++++++|+ +|+++|.+++|..+.
T Consensus 94 ~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 94 SEG-KVRGVCQPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred cCC-eEEEEEEEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 877 7999999999999999999999997 899999999998775
No 4
>PLN02322 acyl-CoA thioesterase
Probab=99.94 E-value=8.9e-26 Score=169.13 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=99.4
Q ss_pred CCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhc-CCCeeEEEEEEEEeeeCCCC
Q 031768 33 FSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVE-GLPMKVSVDMSISFVSTAKV 105 (153)
Q Consensus 33 ~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~-~~~~~vT~~l~i~fl~pa~~ 105 (153)
.||.. ++|+++.++++|+++++++ |+.|++|||++++|+|+++++++... +....+|+++++||++|++.
T Consensus 10 dpf~~---~LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~ 86 (154)
T PLN02322 10 DPPLH---MLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADL 86 (154)
T ss_pred chHHH---HCCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCC
Confidence 57886 4599999999999999999 99999999999999999999876543 33347999999999999999
Q ss_pred CCEEEEEEEEEeecCcEEEEEEEEEEC----C-CCeEEEEEEEEEEE
Q 031768 106 NDELEITGRVLGQRGGYSGTIVLMRNK----A-TGEVIAEGRHSLFG 147 (153)
Q Consensus 106 g~~l~~~a~v~~~gr~~~~~~~~i~~~----~-~g~lvA~a~~t~~i 147 (153)
|+.|+++|+++|.||++.++++++++. + +|+++|.++.|+.+
T Consensus 87 G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~ 133 (154)
T PLN02322 87 GDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLIC 133 (154)
T ss_pred CCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEE
Confidence 999999999999999999999999983 1 37999999999855
No 5
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=6.7e-26 Score=169.39 Aligned_cols=111 Identities=24% Similarity=0.414 Sum_probs=98.1
Q ss_pred CCCccccccccceEEEEEcCCEEEEEEe------C--CCCcccHHHHHHHHHHHHHHHHHhcCC---------------C
Q 031768 32 EFSFYEDFALRGIRVDRVEPGLVSCTFK------D--RNGNLANGAIANLVDEVGGAVVYVEGL---------------P 88 (153)
Q Consensus 32 ~~~f~~~~~~~gi~~~~~~~g~v~~~~~------N--~~G~lHGG~iatl~D~a~g~a~~~~~~---------------~ 88 (153)
..||.. +.|+++.++++|.++++++ | +.|.+|||+++||+|+++++++++... .
T Consensus 20 ~~pf~~---~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~ 96 (154)
T PRK11688 20 HMPFNR---LLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLS 96 (154)
T ss_pred cCCHHH---HhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 367775 4599999999999999999 4 589999999999999999998865310 1
Q ss_pred eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEE
Q 031768 89 MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 147 (153)
Q Consensus 89 ~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i 147 (153)
..+|++|++||++|++ |++|+++|+++|.||++++++++++++ +|+++|+++++|++
T Consensus 97 ~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 97 RLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred cceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 2489999999999996 889999999999999999999999997 79999999999986
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.94 E-value=3.3e-25 Score=157.85 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=97.5
Q ss_pred CccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhc--CCCeeEEEEEEEEeeeCCCC
Q 031768 34 SFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVE--GLPMKVSVDMSISFVSTAKV 105 (153)
Q Consensus 34 ~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~--~~~~~vT~~l~i~fl~pa~~ 105 (153)
||.. +.|+++.++++|+++++++ |+.|++|||++++++|.++++++... .....+|++++++|++|++.
T Consensus 1 p~~~---~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~ 77 (117)
T TIGR00369 1 PLVS---FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPARE 77 (117)
T ss_pred Cccc---ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCC
Confidence 4554 4599999999999999999 99999999999999999998766543 23356999999999999999
Q ss_pred CCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEE
Q 031768 106 NDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 147 (153)
Q Consensus 106 g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i 147 (153)
| .|++++++++.||++++++++++++ +|+++|+++++|++
T Consensus 78 g-~l~a~a~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~~ 117 (117)
T TIGR00369 78 G-KVRAIAQVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTAV 117 (117)
T ss_pred C-EEEEEEEEEecCceEEEEEEEEECC-CCCEEEEEEEEEcC
Confidence 9 8999999999999999999999997 79999999999974
No 7
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.94 E-value=7e-25 Score=155.77 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=97.0
Q ss_pred ccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEE
Q 031768 41 LRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGR 114 (153)
Q Consensus 41 ~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~ 114 (153)
+.|+++.++++|++.++++ |+.|++|||++++++|.++++++...+. ..+|++++++|++|++.|+.|+++++
T Consensus 3 ~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~~-~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 3 ALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYGD-AAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred ccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCCC-ceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 3499999999999999999 9999999999999999999887755443 36899999999999999999999999
Q ss_pred EEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 115 VLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 115 v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
+++.|+++.+++++++++ +|+++|++++++++.
T Consensus 82 v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRRL 114 (114)
T ss_pred EEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEEC
Confidence 999999999999999996 899999999999863
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=4.1e-25 Score=162.67 Aligned_cols=117 Identities=22% Similarity=0.336 Sum_probs=104.4
Q ss_pred CCCCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcCC--CeeEEEEEEEEeeeC
Q 031768 31 TEFSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEGL--PMKVSVDMSISFVST 102 (153)
Q Consensus 31 ~~~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~~--~~~vT~~l~i~fl~p 102 (153)
...||.+ ..|+++.++++|+++++++ |+.|++|||++++++|.++++++++... ...+|+++++||+||
T Consensus 16 ~~~~~~~---~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~ 92 (141)
T COG2050 16 ERSPFLK---TLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRP 92 (141)
T ss_pred cccchhh---hcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccC
Confidence 3467776 4499999999999999999 8999999999999999999999987643 235899999999999
Q ss_pred CCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Q 031768 103 AKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPS 151 (153)
Q Consensus 103 a~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~~~ 151 (153)
++.|+ +.++|+++|.||+++++++++++.+.++++|++++|+++.+..
T Consensus 93 ~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 93 VKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred CCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 99998 9999999999999999999999765679999999999998753
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.85 E-value=6e-20 Score=135.17 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=92.8
Q ss_pred CCCCccccccccceEEEEEcCCEEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHh----cCC-CeeEEEEEEEEee
Q 031768 31 TEFSFYEDFALRGIRVDRVEPGLVSCTFK-----DRNGNLANGAIANLVDEVGGAVVYV----EGL-PMKVSVDMSISFV 100 (153)
Q Consensus 31 ~~~~f~~~~~~~gi~~~~~~~g~v~~~~~-----N~~G~lHGG~iatl~D~a~g~a~~~----~~~-~~~vT~~l~i~fl 100 (153)
...||.. .+|+++.++++|+++++++ |+.|++|||+++||+|.+++.++.. .+. ...+|++++++|+
T Consensus 4 ~~ip~~~---~lGi~v~e~~~g~~~v~~pl~~n~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl 80 (138)
T TIGR02447 4 SAIPLSE---AMGIAVSSYTGGELRLSAPLAANINHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYL 80 (138)
T ss_pred hhCCHHH---HcCCEEEEeeCCEEEEEeECCCCcCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEc
Confidence 3467776 4599999999999999999 9999999999999999887654421 121 2469999999999
Q ss_pred eCCCCCCEEEEEEEE-------------EeecCcEEEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 101 STAKVNDELEITGRV-------------LGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 101 ~pa~~g~~l~~~a~v-------------~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
+|++.+ +.+++++ .+.||+..++++++++ +|+++|+++++|++.+
T Consensus 81 ~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 81 APVTGD--PVANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVALP 138 (138)
T ss_pred CCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEeC
Confidence 999743 6777777 7889999999999996 5799999999998754
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.84 E-value=3.9e-19 Score=124.05 Aligned_cols=102 Identities=27% Similarity=0.425 Sum_probs=93.1
Q ss_pred ceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcC--CCeeEEEEEEEEeeeCCCCCCEEEEEEE
Q 031768 43 GIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAKVNDELEITGR 114 (153)
Q Consensus 43 gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~--~~~~vT~~l~i~fl~pa~~g~~l~~~a~ 114 (153)
|+++.+.+++.++++++ |+.|.+|||++++++|.+++..+.... ....++.+++++|++|++. +.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~ 81 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARAR 81 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEE
Confidence 78899999999999999 899999999999999999998776653 3346999999999999999 89999999
Q ss_pred EEeecCcEEEEEEEEEECCCCeEEEEEEEEEE
Q 031768 115 VLGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 146 (153)
Q Consensus 115 v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 146 (153)
+.+.|++..+++++++++ +|+++|+|+++++
T Consensus 82 v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 82 VVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred EEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 999999999999999986 6999999999875
No 11
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.69 E-value=5.1e-16 Score=101.72 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCC--CeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGL--PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIA 139 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~--~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 139 (153)
+|++|||.+++++|.++..++...+. ...++.+++++|++|++.||++++++++.+.|++.++++++++++ +++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE-DGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET-TSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC-CCcEEC
Confidence 58999999999999999998877654 356999999999999999999999999999999999999999997 788876
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.68 E-value=3.6e-15 Score=105.22 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=83.3
Q ss_pred cCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEE-EEEeeeCCCCCCEEEEEEEEEeecCcE
Q 031768 50 EPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGGY 122 (153)
Q Consensus 50 ~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l-~i~fl~pa~~g~~l~~~a~v~~~gr~~ 122 (153)
+++.++++++ |+.|++|||++++++|.+++.++........++..+ +++|++|++.|+.|.+++++.+.|++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~ 83 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTS 83 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCe
Confidence 4566666666 899999999999999999988765443333567777 799999999999999999999999999
Q ss_pred EEEEEEEEECC----CCeEEEEEEEEEEEec
Q 031768 123 SGTIVLMRNKA----TGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 123 ~~~~~~i~~~~----~g~lvA~a~~t~~i~~ 149 (153)
+.+++++++.+ +++++|+|..++....
T Consensus 84 ~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 84 MEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 99999999863 2479999999887654
No 13
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.67 E-value=6.7e-16 Score=105.53 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=75.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcC-CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEG-LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 140 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~-~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~ 140 (153)
.+.+|||++++++|.+++.++.... ....+|++++++|++|++.++++++++++++.|+++++.+++++++ +|+++|+
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~G~lva~ 92 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-DGKLVAS 92 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC-CCcEEEE
Confidence 6899999999999999988776542 2246999999999999999999999999999999999999999997 7999999
Q ss_pred EEEEEE
Q 031768 141 GRHSLF 146 (153)
Q Consensus 141 a~~t~~ 146 (153)
++.++.
T Consensus 93 ~~~~~~ 98 (99)
T cd00556 93 ATQSFL 98 (99)
T ss_pred EEEeEc
Confidence 998875
No 14
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.65 E-value=3.6e-15 Score=108.93 Aligned_cols=109 Identities=23% Similarity=0.392 Sum_probs=80.4
Q ss_pred CCccccccccceEEEEEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHh-cCCC-eeEEEEEEEEeeeCCC
Q 031768 33 FSFYEDFALRGIRVDRVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYV-EGLP-MKVSVDMSISFVSTAK 104 (153)
Q Consensus 33 ~~f~~~~~~~gi~~~~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~-~~~~-~~vT~~l~i~fl~pa~ 104 (153)
.||+. ..|+++.++++++++++++ |+.|++|||++++++|.++|+.+.. .+.. .....+++++|++|++
T Consensus 13 ~P~~~---~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~ 89 (132)
T PF14539_consen 13 VPFFG---TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR 89 (132)
T ss_dssp SHHHH---CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---
T ss_pred cCccc---cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC
Confidence 35554 3599999999999999999 9999999999999999999986654 3444 4578999999999985
Q ss_pred CCCEEEEEEEEEee---cCcEEEEEEEEEECCCCeEEEEEEEEEEE
Q 031768 105 VNDELEITGRVLGQ---RGGYSGTIVLMRNKATGEVIAEGRHSLFG 147 (153)
Q Consensus 105 ~g~~l~~~a~v~~~---gr~~~~~~~~i~~~~~g~lvA~a~~t~~i 147 (153)
| .|.+++++... .+....++++++|+ +|+.+|+++.++|+
T Consensus 90 -g-~v~a~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 90 -G-DVTATAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWYV 132 (132)
T ss_dssp -S--EEEEEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEEE
T ss_pred -C-cEEEEEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEEC
Confidence 5 48999988642 24556778999997 89999999999986
No 15
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.58 E-value=1.3e-13 Score=101.10 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=74.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEE-EEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECC-----
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKA----- 133 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l-~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~----- 133 (153)
|+.|.+|||.+++++|+++++++........+|+.+ .++|++|++.||.|.++++|.+.|++...++++++.+.
T Consensus 24 N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~~~~~~~~ 103 (133)
T PRK10694 24 NANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWVKKVASEP 103 (133)
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEEeecccCC
Confidence 999999999999999999998776554444789999 57999999999999999999999999999999998521
Q ss_pred CC--eEEEEEEEEEEEe
Q 031768 134 TG--EVIAEGRHSLFGR 148 (153)
Q Consensus 134 ~g--~lvA~a~~t~~i~ 148 (153)
.| ++++++..||...
T Consensus 104 ~g~~~~~~~~~~tfVav 120 (133)
T PRK10694 104 IGQRYKATEALFTYVAV 120 (133)
T ss_pred CCcEEEEEEEEEEEEEE
Confidence 12 4567777777443
No 16
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.49 E-value=3.1e-12 Score=98.48 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=81.5
Q ss_pred EEEEEcCC-EEEEEEe-------CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEE
Q 031768 45 RVDRVEPG-LVSCTFK-------DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVL 116 (153)
Q Consensus 45 ~~~~~~~g-~v~~~~~-------N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~ 116 (153)
++.++++| ++++.+. |..+++|||++++++|.++.++ .+....++...+++|++|+.+||.|.++++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~ 152 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---IDAELALTGVANIRFKRPVKLGERVVAKAEVV 152 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEE
Confidence 56677888 5777666 6678999999999999863322 23344678888999999999999999999999
Q ss_pred eecCcEEEEEEEEEECCCCeEEEEEEEEEEE
Q 031768 117 GQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 147 (153)
Q Consensus 117 ~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i 147 (153)
+.+++...++++++. +|+++++|+.+++.
T Consensus 153 ~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 153 RKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999889999985 68999999998876
No 17
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.49 E-value=1.2e-12 Score=98.21 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=73.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEE-EEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECC--CC-
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMS-ISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKA--TG- 135 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~-i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~--~g- 135 (153)
|+.|.+|||-+++++|.++++++..+....+||+.+. ++|++|++.||.|.+.|++.+.||+...+.+++|.++ ++
T Consensus 26 N~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~ 105 (157)
T COG1607 26 NPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGE 105 (157)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCc
Confidence 9999999999999999999998766644447888776 9999999999999999999999999999999999742 12
Q ss_pred -eEEEEEEEEEEEe
Q 031768 136 -EVIAEGRHSLFGR 148 (153)
Q Consensus 136 -~lvA~a~~t~~i~ 148 (153)
+..+++..+|.-.
T Consensus 106 ~~~~t~~~ft~VAv 119 (157)
T COG1607 106 RRLATSAYFTFVAV 119 (157)
T ss_pred ceEeeeEEEEEEEE
Confidence 3455566665433
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.30 E-value=1.8e-10 Score=78.16 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=76.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC---------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR 130 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~---------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~ 130 (153)
|+.|.+|+|.+.+++|++....+...+ ....++.+.+++|++|++.|+.|.+++++.+.+++....+.+++
T Consensus 13 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 92 (110)
T cd00586 13 DAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIF 92 (110)
T ss_pred CCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEE
Confidence 899999999999999999987655432 12358899999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEEEEEEE
Q 031768 131 NKATGEVIAEGRHSLFG 147 (153)
Q Consensus 131 ~~~~g~lvA~a~~t~~i 147 (153)
++ +|+++|+++.++..
T Consensus 93 ~~-~g~~~a~~~~~~~~ 108 (110)
T cd00586 93 RE-DGELLATAETVLVC 108 (110)
T ss_pred CC-CCeEEEEEEEEEEE
Confidence 86 79999999987654
No 19
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.12 E-value=6.2e-09 Score=66.41 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=74.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC--CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~--~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
+..+.+|||.+..++|.+....+.... ....++.+++++|++|++.|+.+.++.++.+.+++....+..+++. +|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 91 (100)
T cd03440 13 DGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNE-DGKL 91 (100)
T ss_pred CcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECC-CCCE
Confidence 678999999999999999987665442 2346889999999999999999999999999999999999999986 7999
Q ss_pred EEEEEEEE
Q 031768 138 IAEGRHSL 145 (153)
Q Consensus 138 vA~a~~t~ 145 (153)
++.+..++
T Consensus 92 ~~~~~~~~ 99 (100)
T cd03440 92 VATATATF 99 (100)
T ss_pred EEEEEEEe
Confidence 99987654
No 20
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=7.3e-10 Score=87.29 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=68.2
Q ss_pred EEcCCEEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcC-CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecC
Q 031768 48 RVEPGLVSCTFK------DRNGNLANGAIANLVDEVGGAVVYVEG-LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG 120 (153)
Q Consensus 48 ~~~~g~v~~~~~------N~~G~lHGG~iatl~D~a~g~a~~~~~-~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr 120 (153)
..+.++.++-+. ++.|.+|||+|||++|++++++.+... .+.++|.+|+++|.+|++....+.+++.+.+..+
T Consensus 121 d~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~~G 200 (237)
T KOG4781|consen 121 DPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEG 200 (237)
T ss_pred ecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhhcC
Confidence 445556666555 899999999999999999999887654 3568999999999999999999999999997777
Q ss_pred cEEEEEEEEEE
Q 031768 121 GYSGTIVLMRN 131 (153)
Q Consensus 121 ~~~~~~~~i~~ 131 (153)
|.+-+.+++..
T Consensus 201 rk~~~~g~l~~ 211 (237)
T KOG4781|consen 201 RKCKTFGELNV 211 (237)
T ss_pred cccceeeEEEE
Confidence 65555555554
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.05 E-value=3.7e-09 Score=90.92 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=75.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCC--------eeEEEEEE-EEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLP--------MKVSVDMS-ISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR 130 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~--------~~vT~~l~-i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~ 130 (153)
|+.|.+|||-|+.++|.++++++..+... ..||+.+. ++|++|++.|+.|.++|+|...|++...+.++++
T Consensus 106 N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~ 185 (437)
T PLN02647 106 NPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEVI 185 (437)
T ss_pred CCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEEE
Confidence 99999999999999999999987665322 46888776 9999999999999999999999999999999999
Q ss_pred ECC------CCeEEEEEEEEEEEec
Q 031768 131 NKA------TGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 131 ~~~------~g~lvA~a~~t~~i~~ 149 (153)
.+. +..++++|.+||.-..
T Consensus 186 ~~~~~~~~~~~~~~~~a~FtfVA~D 210 (437)
T PLN02647 186 QPTKDESNTSDSVALTANFTFVARD 210 (437)
T ss_pred EccccCCCCcEEEEEEEEEEEEEEc
Confidence 742 1246788888875543
No 22
>PLN02647 acyl-CoA thioesterase
Probab=99.01 E-value=7e-09 Score=89.23 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEE-EEeeeCCCCCCEEEEEEEEEeecC-----cEEEEEEE--EEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMS-ISFVSTAKVNDELEITGRVLGQRG-----GYSGTIVL--MRN 131 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~-i~fl~pa~~g~~l~~~a~v~~~gr-----~~~~~~~~--i~~ 131 (153)
|.+|.+|||.++.++|+++++++..+.....+|+.+. ++|++|+++|+.|.++|.|+..+. ....+++. +.+
T Consensus 303 N~~g~iFGG~LM~~~De~A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~ 382 (437)
T PLN02647 303 NIHGRIFGGFLMRRAFELAFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTR 382 (437)
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEc
Confidence 9999999999999999999987766544335777776 999999999999999999987664 34455544 444
Q ss_pred CC--CCeEEEEEEEEEEEec
Q 031768 132 KA--TGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 132 ~~--~g~lvA~a~~t~~i~~ 149 (153)
.+ +++++.++..||...+
T Consensus 383 ~~~~~~~~~n~~~fTfva~d 402 (437)
T PLN02647 383 PELRSSEVSNTFYFTFTVRP 402 (437)
T ss_pred CCCCcceEEEEEEEEEEEec
Confidence 32 3467778888887654
No 23
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.94 E-value=2.7e-08 Score=68.64 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=65.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
.+.+|||.+++++..++...+ ... ....+++++|++|+..+.+++.+.+++|.||++++.+++++. +|+++..+
T Consensus 15 ~~~~~GG~l~a~a~~Aa~~~~---~~~-~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q--~g~~~~~a 88 (94)
T cd03445 15 GRGVFGGQVLAQALVAAARTV---PDD-RVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ--NGKVIFTA 88 (94)
T ss_pred CCceEHHHHHHHHHHHHHhhC---CCC-CCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE--CCEEEEEE
Confidence 678999999999877765433 221 245689999999998888899999999999999999999987 58999999
Q ss_pred EEEEE
Q 031768 142 RHSLF 146 (153)
Q Consensus 142 ~~t~~ 146 (153)
+.+|-
T Consensus 89 ~~sf~ 93 (94)
T cd03445 89 TASFQ 93 (94)
T ss_pred EEEEe
Confidence 88763
No 24
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.93 E-value=3e-08 Score=78.57 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
.+.+|||++++++=.++-... .+.. ....+++++|++|++.| .++++++++|.||++++.++++++ +|++++++
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~--~~~~-~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a 82 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA--PPPG-FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATA 82 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH--TTTS-SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc--cCCC-CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEE
Confidence 567999988877755554433 1212 36788999999999999 999999999999999999999998 58999999
Q ss_pred EEEEEEec
Q 031768 142 RHSLFGRQ 149 (153)
Q Consensus 142 ~~t~~i~~ 149 (153)
+++|....
T Consensus 83 ~~~f~~~~ 90 (255)
T PF13622_consen 83 TASFGRPE 90 (255)
T ss_dssp EEEEE--T
T ss_pred EEEEccCc
Confidence 99886654
No 25
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.87 E-value=9.4e-08 Score=67.79 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=64.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecC--cEEEEEEEEEECCCCeEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG--GYSGTIVLMRNKATGEVIA 139 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr--~~~~~~~~i~~~~~g~lvA 139 (153)
.-++||..++++++.+++.. ......+..+.+++|++|+.+||+|.++++++.... ....+++++++. +|++++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~~---~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~ 120 (128)
T cd03449 45 GRIAHGMLTASLISAVLGTL---LPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVI 120 (128)
T ss_pred CceecHHHHHHHHHHHHhcc---CCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEE
Confidence 46899999999987654321 122234667889999999999999999999996655 788899999996 799999
Q ss_pred EEEEEEE
Q 031768 140 EGRHSLF 146 (153)
Q Consensus 140 ~a~~t~~ 146 (153)
+++++.+
T Consensus 121 ~g~~~~~ 127 (128)
T cd03449 121 EGEAVVL 127 (128)
T ss_pred EEEEEEe
Confidence 9998765
No 26
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.83 E-value=3.4e-07 Score=68.01 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=72.0
Q ss_pred ccceEEEEEcCCEEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHh----cCCC-eeEEEEEEEEeeeCCCCCCEEE
Q 031768 41 LRGIRVDRVEPGLVSCTFK-----DRNGNLANGAIANLVDEVGGAVVYV----EGLP-MKVSVDMSISFVSTAKVNDELE 110 (153)
Q Consensus 41 ~~gi~~~~~~~g~v~~~~~-----N~~G~lHGG~iatl~D~a~g~a~~~----~~~~-~~vT~~l~i~fl~pa~~g~~l~ 110 (153)
.+|+++.+.+++.++++.| |..|++.||-+++++=-++...++. .+.. ..|-.+-+++|++|+. ++ +.
T Consensus 17 ~Mgi~v~~~~~~~l~~~APL~pN~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~-~d-~~ 94 (144)
T PF09500_consen 17 AMGIKVTSYTGQRLELSAPLAPNINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT-GD-FT 94 (144)
T ss_dssp HTT-EEEEEETTEEEEE--SGGGB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S----S---E
T ss_pred hcCcEEEEEcCCEEEEeccCCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC-CC-cE
Confidence 3499999999999999999 8999999999999997776543332 2322 3588999999999996 43 67
Q ss_pred EEEEEE-------------eecCcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 111 ITGRVL-------------GQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 111 ~~a~v~-------------~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
+++++- +.||--..+++++++ +|+++|+.++.|.+.
T Consensus 95 A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 95 ARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp EEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred EEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 888775 667778888999997 588999999998764
No 27
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=98.73 E-value=1.8e-06 Score=61.97 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=76.7
Q ss_pred EEEEEe--CCCCcccHHHHHHHHHHHHHHHHHhcC---------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcE
Q 031768 54 VSCTFK--DRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGY 122 (153)
Q Consensus 54 v~~~~~--N~~G~lHGG~iatl~D~a~g~a~~~~~---------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~ 122 (153)
+++++. +..|.+|=+.+..+++.+........+ ....+.++++++|++|+..||.|.++.++.+.|++.
T Consensus 7 ~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s 86 (130)
T PRK10800 7 VRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRGTS 86 (130)
T ss_pred EEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEE
Confidence 344555 889999999999999999775443322 123478899999999999999999999999999988
Q ss_pred EEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 123 SGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 123 ~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
....-++++. +|+++|+|..++...
T Consensus 87 ~~~~~~i~~~-~g~~~a~~~~~~v~~ 111 (130)
T PRK10800 87 LTFTQRIVNA-EGTLLNEAEVLIVCV 111 (130)
T ss_pred EEEEEEEEcC-CCeEEEEEEEEEEEE
Confidence 7788889986 799999999886554
No 28
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.70 E-value=2.2e-06 Score=60.67 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=75.9
Q ss_pred EEEEEe--CCCCcccHHHHHHHHHHHHHHHHHhcC----------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCc
Q 031768 54 VSCTFK--DRNGNLANGAIANLVDEVGGAVVYVEG----------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGG 121 (153)
Q Consensus 54 v~~~~~--N~~G~lHGG~iatl~D~a~g~a~~~~~----------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~ 121 (153)
.++++. ++.|.+|.+.+..+++.+....+...+ ....+..+++++|++|++.||.|.+++++.+.|++
T Consensus 5 ~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~ 84 (126)
T TIGR02799 5 IRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELKGA 84 (126)
T ss_pred EEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecCce
Confidence 445555 899999999999999988665433221 11247889999999999999999999999999999
Q ss_pred EEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 122 YSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 122 ~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
......++++ +|+++|.|..++...
T Consensus 85 ~~~~~~~i~~--~g~~~a~~~~~~v~v 109 (126)
T TIGR02799 85 SLVFAQEVRR--GDTLLCEATVEVACV 109 (126)
T ss_pred EEEEEEEEEe--CCEEEEEEEEEEEEE
Confidence 9999999995 689999998876443
No 29
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.59 E-value=3.9e-06 Score=58.30 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=72.8
Q ss_pred EEEEe--CCCCcccHHHHHHHHHHHHHHHHHhcC---------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEE
Q 031768 55 SCTFK--DRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYS 123 (153)
Q Consensus 55 ~~~~~--N~~G~lHGG~iatl~D~a~g~a~~~~~---------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~ 123 (153)
++++. ++.|.+|-+.+..+++.+........+ ....+.++++++|++|++.||.|.++.++.+.|++..
T Consensus 3 ~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~ 82 (117)
T TIGR00051 3 RVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFSF 82 (117)
T ss_pred EEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEEE
Confidence 44555 889999999999999999765433222 1224789999999999999999999999999999998
Q ss_pred EEEEEEEECCCCeEEEEEEEEE-EEe
Q 031768 124 GTIVLMRNKATGEVIAEGRHSL-FGR 148 (153)
Q Consensus 124 ~~~~~i~~~~~g~lvA~a~~t~-~i~ 148 (153)
..+-++++. ++++++.+..+. ++.
T Consensus 83 ~~~~~i~~~-~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 83 VFSQEIFNE-DEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEeC-CCcEEEeeEEEEEEEE
Confidence 889999986 566666665433 443
No 30
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.48 E-value=4e-05 Score=56.20 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhc-C--CCeeEEEE-EEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVE-G--LPMKVSVD-MSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~-~--~~~~vT~~-l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
...+||=++.-++..+.++..... + ........ -++.|++|+++||+|.+++++...++++..++++++. +|++
T Consensus 57 ~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~--~g~~ 134 (147)
T PRK00006 57 YPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATV--DGKL 134 (147)
T ss_pred CCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEE
Confidence 345777666555555555433222 1 12222222 2799999999999999999999999999999999975 6899
Q ss_pred EEEEEEEEEEe
Q 031768 138 IAEGRHSLFGR 148 (153)
Q Consensus 138 vA~a~~t~~i~ 148 (153)
+++++.++++.
T Consensus 135 v~~~~~~~~~~ 145 (147)
T PRK00006 135 VAEAELMFAIR 145 (147)
T ss_pred EEEEEEEEEEE
Confidence 99999988864
No 31
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.41 E-value=6.6e-05 Score=53.36 Aligned_cols=83 Identities=13% Similarity=0.022 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcC----CCee-EEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEG----LPMK-VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~----~~~~-vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
..++|=++.-++..++++...... .... ...--++.|++|+++|+.+++++++.+.+++...++++++. +|++
T Consensus 43 pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~--~g~~ 120 (131)
T cd01288 43 PIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYV--DGKL 120 (131)
T ss_pred CcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEE
Confidence 678887777777777666443221 2222 23335799999999999999999999999999999999975 6899
Q ss_pred EEEEEEEEEE
Q 031768 138 IAEGRHSLFG 147 (153)
Q Consensus 138 vA~a~~t~~i 147 (153)
+++|+.+++.
T Consensus 121 v~~~~~~~~~ 130 (131)
T cd01288 121 VAEAELMFAI 130 (131)
T ss_pred EEEEEEEEEE
Confidence 9999988764
No 32
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.37 E-value=1.2e-05 Score=57.39 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=59.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCc-EEEEEEEEEECCCCeEEEEE
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGG-YSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~-~~~~~~~i~~~~~g~lvA~a 141 (153)
=++||..+++++..+..-. .+.. ..-..++++|++|+.+||+|.++++|...... ++.+++++.|. +|+++.++
T Consensus 44 ~ia~G~~~~~~~~~~~~~~---~~~~-~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq-~G~~v~~g 118 (123)
T cd03455 44 LYVNGPTLAGLVIRYVTDW---AGPD-ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS-EGDHVMAG 118 (123)
T ss_pred eEEEHHHHHHHHHHHHHHc---cCCc-ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-CCCEEEeE
Confidence 3589999999998654321 1221 34456899999999999999999999844332 77788888886 79999999
Q ss_pred EEEE
Q 031768 142 RHSL 145 (153)
Q Consensus 142 ~~t~ 145 (153)
+++.
T Consensus 119 ~a~v 122 (123)
T cd03455 119 TATV 122 (123)
T ss_pred EEEE
Confidence 8764
No 33
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.35 E-value=4.2e-05 Score=56.02 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCC---------CeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGL---------PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR 130 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~---------~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~ 130 (153)
...|.+|=+....+++.+-.-.+...+. -..+.++++++|++|++.||.++++.++.+.|+......-+|+
T Consensus 18 D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~ 97 (137)
T COG0824 18 DAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIV 97 (137)
T ss_pred CcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEE
Confidence 7899999999999999997654443221 1258999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEEEEEEE
Q 031768 131 NKATGEVIAEGRHSLFG 147 (153)
Q Consensus 131 ~~~~g~lvA~a~~t~~i 147 (153)
++ + +++|+|+.+...
T Consensus 98 ~~-~-~l~a~~~~~~V~ 112 (137)
T COG0824 98 NE-D-ELLATGETTLVC 112 (137)
T ss_pred eC-C-EEEEEEEEEEEE
Confidence 86 3 999999987543
No 34
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.35 E-value=1.4e-05 Score=56.25 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecC----cEEEEEEEEEECCCCe
Q 031768 61 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG----GYSGTIVLMRNKATGE 136 (153)
Q Consensus 61 ~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr----~~~~~~~~i~~~~~g~ 136 (153)
+.-++||..+++++..+...... +.........+++|++|+.+||+|.+++++..... ....++.++.|. +|+
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~ 117 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLP--GTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGE 117 (127)
T ss_pred CCceechHHHHHHHHhhhhhhcc--CcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCC
Confidence 35689999999999876644322 11234667889999999999999999999986543 577889999986 788
Q ss_pred EEEEEEEE
Q 031768 137 VIAEGRHS 144 (153)
Q Consensus 137 lvA~a~~t 144 (153)
++..++.+
T Consensus 118 ~v~~g~~~ 125 (127)
T cd03441 118 VVLSGEAT 125 (127)
T ss_pred EEEEEEEE
Confidence 88887654
No 35
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.33 E-value=6.5e-06 Score=66.09 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=62.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEE
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGR 142 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~ 142 (153)
+.++||.+++.+=.++.. +.+.. ..-.+|+++|++|+..+..++++.+++|.||+++..+++++. +|+++++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~---tv~~~-~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~a~ 94 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASK---TVPEE-FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFTLQ 94 (271)
T ss_pred CceEccHHHHHHHHHHHh---cCCCC-CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEEEE
Confidence 589999999876433332 22322 122469999999998888999999999999999999999997 589999999
Q ss_pred EEEE
Q 031768 143 HSLF 146 (153)
Q Consensus 143 ~t~~ 146 (153)
++|-
T Consensus 95 asf~ 98 (271)
T TIGR00189 95 ASFQ 98 (271)
T ss_pred EEcc
Confidence 8876
No 36
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.26 E-value=1.3e-05 Score=58.42 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=58.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCC-CeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecC-------cEEEEEEEEEECC
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGL-PMKVSVDMSISFVSTAKVNDELEITGRVLGQRG-------GYSGTIVLMRNKA 133 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~-~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr-------~~~~~~~~i~~~~ 133 (153)
.-++||..+.+++-. +....... ......-.+++|++|+.+||+|.++++|+.... .++.++++++|.
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq- 128 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ- 128 (146)
T ss_pred CccccHHhHHHHHhh---heehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-
Confidence 346899888876532 11111111 111111238999999999999999999985432 487888888876
Q ss_pred CCeEEEEEEEEEEEecC
Q 031768 134 TGEVIAEGRHSLFGRQP 150 (153)
Q Consensus 134 ~g~lvA~a~~t~~i~~~ 150 (153)
+|+++++++.+..++..
T Consensus 129 ~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 129 DGEPVLSFERTALVPKR 145 (146)
T ss_pred CCCEEEEEEehhEEEcC
Confidence 79999999998877653
No 37
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.22 E-value=0.00016 Score=50.70 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhc-------CCC-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVE-------GLP-MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRN 131 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~-------~~~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~ 131 (153)
+ .|.+|-+....++|.+-....... +.. ..+..+.+++|++|++.||.+.++.++.+.|++....+-++++
T Consensus 7 D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~ 85 (121)
T PF13279_consen 7 D-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFR 85 (121)
T ss_dssp --TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred c-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEE
Confidence 5 789999999999999865433211 112 3589999999999999999999999999999999999999998
Q ss_pred CCCCeE--EEEEEEEEEE
Q 031768 132 KATGEV--IAEGRHSLFG 147 (153)
Q Consensus 132 ~~~g~l--vA~a~~t~~i 147 (153)
.++|+. +|++..+...
T Consensus 86 ~~~g~~~~~a~~~~~~v~ 103 (121)
T PF13279_consen 86 PADGKGELAATGRTVMVF 103 (121)
T ss_dssp CSTTEEEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEEEEE
Confidence 445655 9999877544
No 38
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.21 E-value=4.3e-05 Score=54.79 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=57.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEe----ecCcEEEEEEEEEECCCCeE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLG----QRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~----~gr~~~~~~~~i~~~~~g~l 137 (153)
.=++||-.+++++.....-. .... ..-.+++++|++|+.+||+|.++++|+. .++.++.++.+++|. +|++
T Consensus 44 ~~i~~G~~~~~~~~~~~~~~---~~~~-~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq-~g~~ 118 (127)
T cd03453 44 GVIAHGMLTMGLLGRLVTDW---VGDP-GRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQ-AGGK 118 (127)
T ss_pred CcEecHHHHHHHHHHHHHHH---cCCc-cceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEc-CCCE
Confidence 34789999888885443221 1212 2225788999999999999999999973 245688899999997 7999
Q ss_pred EEEEEEE
Q 031768 138 IAEGRHS 144 (153)
Q Consensus 138 vA~a~~t 144 (153)
+.+++++
T Consensus 119 v~~g~a~ 125 (127)
T cd03453 119 KVLGRAI 125 (127)
T ss_pred EEEEEEE
Confidence 8888865
No 39
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=2.3e-05 Score=56.64 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=54.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcCCC---eeEEEEEEEEeeeCCCCCCEEEEEEEEEeec------CcEEEEEEEEEECC
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEGLP---MKVSVDMSISFVSTAKVNDELEITGRVLGQR------GGYSGTIVLMRNKA 133 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~~~---~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g------r~~~~~~~~i~~~~ 133 (153)
-++||..+++++..+.. ...+.. ......-+++|++|+++||+|.++++|.... +.++.++.+++|.
T Consensus 51 ~ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq- 126 (140)
T cd03446 51 RIAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ- 126 (140)
T ss_pred ceeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-
Confidence 36888888776643321 111111 1111223899999999999999999998542 2477788888886
Q ss_pred CCeEEEEEEEEEE
Q 031768 134 TGEVIAEGRHSLF 146 (153)
Q Consensus 134 ~g~lvA~a~~t~~ 146 (153)
+|+++++++++..
T Consensus 127 ~g~~v~~~~~~~l 139 (140)
T cd03446 127 RGEVVQSGEMSLL 139 (140)
T ss_pred CCCEEEEEEEeee
Confidence 8999999987654
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.16 E-value=9.8e-05 Score=53.33 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=60.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
.=++||-..++++-.+.+- +..+.......+++++|++|+.+||+|.++.+++........++.++++.++|+++.++
T Consensus 42 ~~iahG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g 119 (126)
T cd03447 42 GTITHGMYTSAAVRALVET--WAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRG 119 (126)
T ss_pred CCeechhHHHHHHHHHHHH--hccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEE
Confidence 3568999988888554422 11122223456689999999999999999999997666667788899987338999888
Q ss_pred EEEE
Q 031768 142 RHSL 145 (153)
Q Consensus 142 ~~t~ 145 (153)
+++.
T Consensus 120 ~~~v 123 (126)
T cd03447 120 EAEV 123 (126)
T ss_pred EEEE
Confidence 8654
No 41
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.01 E-value=9.4e-05 Score=53.60 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=55.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCeeEE-EEEEEEeeeCCCCCCEEEEEEEEEee-------cCcEEEEEEEEEECCCC
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLPMKVS-VDMSISFVSTAKVNDELEITGRVLGQ-------RGGYSGTIVLMRNKATG 135 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~~~vT-~~l~i~fl~pa~~g~~l~~~a~v~~~-------gr~~~~~~~~i~~~~~g 135 (153)
++||-.+++++=....-... ........ ...+++|++|+.+||+|.++++|... ++.++.++++++|. +|
T Consensus 50 ia~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g 127 (140)
T cd03454 50 AASGWHTAAITMRLLVDAGL-SGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RG 127 (140)
T ss_pred eechHHHHHHHHHhhhhhcc-ccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CC
Confidence 67887777765321110110 11111122 22489999999999999999999844 34588889999986 89
Q ss_pred eEEEEEEEEEEE
Q 031768 136 EVIAEGRHSLFG 147 (153)
Q Consensus 136 ~lvA~a~~t~~i 147 (153)
+++++++++..+
T Consensus 128 ~~v~~~~~~~~~ 139 (140)
T cd03454 128 EVVLTFEATVLV 139 (140)
T ss_pred CEEEEEEehhee
Confidence 999999987654
No 42
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.99 E-value=0.00041 Score=60.75 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC--------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG--------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRN 131 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~--------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~ 131 (153)
+..|.++=+.+..++|.+..-.....+ ....+.++.+++|++|++.||.|.++.++.+.|++....+-++++
T Consensus 358 D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~ 437 (495)
T PRK07531 358 DYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYD 437 (495)
T ss_pred CCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEEC
Confidence 899999999999999988664333322 112478999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEEEEEEEe
Q 031768 132 KATGEVIAEGRHSLFGR 148 (153)
Q Consensus 132 ~~~g~lvA~a~~t~~i~ 148 (153)
. +|+++|+++.++...
T Consensus 438 ~-~g~l~A~g~~~~v~v 453 (495)
T PRK07531 438 A-GGELIATAEHMLLHV 453 (495)
T ss_pred C-CCcEEEEEEEEEEEE
Confidence 5 799999999876543
No 43
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=97.98 E-value=0.00011 Score=55.22 Aligned_cols=59 Identities=25% Similarity=0.256 Sum_probs=50.0
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEEEEEe--e--cCcEEEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 90 KVSVDMSISFVSTAKVNDELEITGRVLG--Q--RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a~v~~--~--gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
.+-.+.+++|++|+.+||+|.++.+|.. . ++.++.++++++|. +|++|.++++++++..
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~ 146 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRA 146 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEec
Confidence 3455568999999999999999999973 2 45688999999986 8999999999998875
No 44
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.98 E-value=0.00011 Score=60.03 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=73.2
Q ss_pred eEEEEEcCCEEEEEEe-CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcE
Q 031768 44 IRVDRVEPGLVSCTFK-DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGY 122 (153)
Q Consensus 44 i~~~~~~~g~v~~~~~-N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~ 122 (153)
+.++.++++.-+..-. .....+.||.+++.+=.|+. .+.+.. -.--++++.|++|+..+..|+.+.+.+|.||++
T Consensus 12 l~l~~~~~~~f~g~~~~~~~r~~fGGqv~AQal~AA~---~tv~~~-~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSf 87 (286)
T PRK10526 12 LNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAK---ETVPEE-RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSF 87 (286)
T ss_pred cCcEEccCCeEECcCCCCCCCceechHHHHHHHHHHH---hcCCCC-CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCce
Confidence 4555666664433333 44678999999876533332 222222 133578999999999899999999999999999
Q ss_pred EEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 123 SGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 123 ~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
+..+++++. +|+++.+++++|-..
T Consensus 88 str~V~a~Q--~g~~if~~~~sF~~~ 111 (286)
T PRK10526 88 SARRVAAIQ--NGKPIFYMTASFQAP 111 (286)
T ss_pred EeEEEEEEE--CCEEEEEEEEEeccC
Confidence 999999998 689999999888743
No 45
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.96 E-value=0.00017 Score=52.87 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=57.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcCCCeeEEE---EEEEEeeeCCCCCCEEEEEEEEEeec--C----cEEEEEEEEEECC
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEGLPMKVSV---DMSISFVSTAKVNDELEITGRVLGQR--G----GYSGTIVLMRNKA 133 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~---~l~i~fl~pa~~g~~l~~~a~v~~~g--r----~~~~~~~~i~~~~ 133 (153)
-++||-.+++++..... ..... ..-. .-+++|++|+.+||+|.++++|.... + .++.+++++.|.
T Consensus 51 ~ia~G~l~~s~~~~l~~----~~~~~-~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq- 124 (142)
T cd03452 51 RVAHGYFVLSAAAGLFV----DPAPG-PVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQ- 124 (142)
T ss_pred eeecHHHHHHHHhhhCc----cCCcc-cEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEec-
Confidence 36888888888765321 11111 1112 23899999999999999999998441 1 377788999986
Q ss_pred CCeEEEEEEEEEEEe
Q 031768 134 TGEVIAEGRHSLFGR 148 (153)
Q Consensus 134 ~g~lvA~a~~t~~i~ 148 (153)
+|+++.+++.+.++.
T Consensus 125 ~g~~V~~~~~~~~~~ 139 (142)
T cd03452 125 NGELVASYDILTLVA 139 (142)
T ss_pred CCCEEEEEEehHeeE
Confidence 799999999876654
No 46
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=97.95 E-value=0.0024 Score=46.75 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=47.3
Q ss_pred EEEEEEEEeeeCCCC-CCEEEEEEEEEeecC-cEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 91 VSVDMSISFVSTAKV-NDELEITGRVLGQRG-GYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 91 vT~~l~i~fl~pa~~-g~~l~~~a~v~~~gr-~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
..++ +++|.+|+.+ ||.+.++++..+..+ .+...+|+++. +|+++|+|+.+.|++
T Consensus 81 ~~i~-~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~~~p 137 (138)
T cd01289 81 LGSR-KYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNVYQP 137 (138)
T ss_pred EEEE-EEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEEEcC
Confidence 3444 7999999755 999999999998885 99999999997 689999999988875
No 47
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.94 E-value=0.0001 Score=61.94 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=83.0
Q ss_pred cccccccceEEEEEcCCEEEEEEe----CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEE
Q 031768 36 YEDFALRGIRVDRVEPGLVSCTFK----DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEI 111 (153)
Q Consensus 36 ~~~~~~~gi~~~~~~~g~v~~~~~----N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~ 111 (153)
++..+..++.-...+ ..+.++.. |+.|++--|+++.++-++.-..+........+--++++-||+|++.++.|++
T Consensus 318 ~~d~I~~~l~e~~~~-~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~iyflk~vqid~~l~I 396 (432)
T COG4109 318 ISDQIANNLSEKGDE-YGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQIDSVLEI 396 (432)
T ss_pred HHHHHHhhhhhhccc-cceEEEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCceEEEeeeeeeecceecccEEEE
Confidence 444444555543333 33445555 9999999999999999998877665433334667899999999999999999
Q ss_pred EEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEE
Q 031768 112 TGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145 (153)
Q Consensus 112 ~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 145 (153)
..+++..||+.+.++++++. +|.++|.|-.+.
T Consensus 397 ~prIl~~gR~~a~idvei~~--~~~ivaKAiv~~ 428 (432)
T COG4109 397 YPRILEEGRKFAKIDVEIYH--DGQIVAKAIVTV 428 (432)
T ss_pred eeeeeccccccceeEEEEee--Ccchhhhheeee
Confidence 99999999999999999998 477888887654
No 48
>PLN02868 acyl-CoA thioesterase family protein
Probab=97.93 E-value=8.7e-05 Score=63.42 Aligned_cols=100 Identities=12% Similarity=0.064 Sum_probs=73.1
Q ss_pred ceEEEEEcCCEEEEEEe-C--CCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeec
Q 031768 43 GIRVDRVEPGLVSCTFK-D--RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQR 119 (153)
Q Consensus 43 gi~~~~~~~g~v~~~~~-N--~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g 119 (153)
-+.++.++++.-+.... + ..+.++||.+++.+=.++ ..+.+.. ..-.++++.|++|...+.+++.+.+++|.|
T Consensus 135 ~~~l~~~~~~~f~~~~~~~~~~~~~~fGG~~~aqal~Aa---~~~~~~~-~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~G 210 (413)
T PLN02868 135 ILHLEPLEVDIFRGITLPDAPTFGKVFGGQLVGQALAAA---SKTVDPL-KLVHSLHAYFLLVGDINLPIIYQVERIRDG 210 (413)
T ss_pred hcCcEeccCCeEECCcCCCCcccccccchHHHHHHHHHH---HccCCCC-CCceEeeeeecCCCCCCCCEEEEEEEEcCC
Confidence 35566666665555444 3 258899999998743322 2232222 123578999999998878899999999999
Q ss_pred CcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 120 GGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 120 r~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
|+++..+++++. +|+++.++.++|-..
T Consensus 211 rs~~~r~v~~~Q--~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 211 HNFATRRVDAIQ--KGKVIFTLFASFQKE 237 (413)
T ss_pred CceEeeEEEEEE--CCeeEEEEeeccccC
Confidence 999999999987 589999998887554
No 49
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.90 E-value=0.0033 Score=44.37 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=44.2
Q ss_pred EEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEE
Q 031768 92 SVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRH 143 (153)
Q Consensus 92 T~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~ 143 (153)
..--++.|++|+.+|+.+++++++...+..++..++++++ +|+++++++.
T Consensus 78 ~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~ 127 (131)
T cd00493 78 AGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAEL 127 (131)
T ss_pred EEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEE
Confidence 3334899999999999999999999988889999999998 5899999983
No 50
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=97.88 E-value=0.0024 Score=46.24 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=44.9
Q ss_pred EEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEE
Q 031768 96 SISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 146 (153)
Q Consensus 96 ~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 146 (153)
++.|++|+++||+|++++++.+..+....++++++. +|+++|+++.++.
T Consensus 91 ~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 91 KAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred eeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 899999999999999999999988899999999975 6999999998774
No 51
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.88 E-value=0.00033 Score=60.97 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=61.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEe--ecCcEEEEEEEEEECCCCeEEEEE
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLG--QRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~--~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
++||-.+++++....+. .......+-...+++|.+|+.+||+|+++.+++. .++.+..++++++|. +|+++.++
T Consensus 60 IahG~l~~s~~~~l~~~---~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g 135 (466)
T PRK08190 60 VAHGMWGGALISAVLGT---RLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQ-DGEVVITG 135 (466)
T ss_pred eeCHHHHHHHHHHHHhh---hCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeC-CCCEEEEE
Confidence 58998888877533221 1122224556789999999999999999999973 366677888899996 89999999
Q ss_pred EEEEEEec
Q 031768 142 RHSLFGRQ 149 (153)
Q Consensus 142 ~~t~~i~~ 149 (153)
+++..++.
T Consensus 136 ~~~~l~~~ 143 (466)
T PRK08190 136 TAEVIAPT 143 (466)
T ss_pred EEEeeccc
Confidence 98877654
No 52
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.86 E-value=0.00054 Score=51.89 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=48.2
Q ss_pred EEEEEEEEeeeCCCCCCEEEEEEEEEee----cCcEEEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 91 VSVDMSISFVSTAKVNDELEITGRVLGQ----RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 91 vT~~l~i~fl~pa~~g~~l~~~a~v~~~----gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
+-.+-+.+|++|+.+||+|.++.+|... ++.++.++.++.|. +|+++++++.+.++..
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQ 146 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEec
Confidence 3345578899999999999999999833 44688889999986 8999999999887765
No 53
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.84 E-value=0.00055 Score=47.78 Aligned_cols=80 Identities=24% Similarity=0.220 Sum_probs=68.2
Q ss_pred cccHHHHHHHHHHHHHHHH-HhcCCC-----eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 64 NLANGAIANLVDEVGGAVV-YVEGLP-----MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~-~~~~~~-----~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
.+|=.+++-+.|......+ ...+.. ...|++-++.|.+|....+++..+.+..+.+...+..+++++++ +|++
T Consensus 16 ~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~G~L 94 (104)
T cd03444 16 RLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-DGEL 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-CCCE
Confidence 6888899999999986544 344432 46899999999999988899999999999999999999999998 8999
Q ss_pred EEEEEEE
Q 031768 138 IAEGRHS 144 (153)
Q Consensus 138 vA~a~~t 144 (153)
+|+..-.
T Consensus 95 vAs~~Q~ 101 (104)
T cd03444 95 VASVAQE 101 (104)
T ss_pred EEEEEEe
Confidence 9988754
No 54
>COG5496 Predicted thioesterase [General function prediction only]
Probab=97.78 E-value=0.00078 Score=48.89 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhc-C-CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVE-G-LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~-~-~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
.....+--+.+..++..++.-++... + ...+|-.+..++.+.|+++|..+.+.+++.+..++-...+.+..+ +|.+
T Consensus 26 ~~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~--~~~~ 103 (130)
T COG5496 26 GMLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAME--GGDK 103 (130)
T ss_pred CccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEee--CCcE
Confidence 34566778889999999988766543 2 234689999999999999999999999999988888778888774 7899
Q ss_pred EEEEEEEEEEecCCC
Q 031768 138 IAEGRHSLFGRQPSK 152 (153)
Q Consensus 138 vA~a~~t~~i~~~~k 152 (153)
+-+++++-++.|..|
T Consensus 104 Ig~g~h~R~iv~~~k 118 (130)
T COG5496 104 IGEGTHTRVIVPREK 118 (130)
T ss_pred EeeeEEEEEEecHHH
Confidence 999999998887643
No 55
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.66 E-value=0.00087 Score=53.77 Aligned_cols=81 Identities=21% Similarity=0.119 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHHH-HHHHHhcCC-----CeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCe
Q 031768 63 GNLANGAIANLVDEVG-GAVVYVEGL-----PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 136 (153)
Q Consensus 63 G~lHGG~iatl~D~a~-g~a~~~~~~-----~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~ 136 (153)
-.+|=-.++.+.|... ..++..++. ....|++.++.|++|.+.++|+..+.+....+......+++++|+ +|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~-~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTR-DGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECC-CCC
Confidence 3456688999999832 233443332 134799999999999889999999999998888888899999997 899
Q ss_pred EEEEEEEE
Q 031768 137 VIAEGRHS 144 (153)
Q Consensus 137 lvA~a~~t 144 (153)
+||+.+-.
T Consensus 260 lvAs~~Qe 267 (271)
T TIGR00189 260 LIASTVQE 267 (271)
T ss_pred EEEEEEee
Confidence 99998754
No 56
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.61 E-value=0.00065 Score=53.68 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCC---CeeEEEEEEEEe-eeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEE
Q 031768 70 IANLVDEVGGAVVYVEGL---PMKVSVDMSISF-VSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145 (153)
Q Consensus 70 iatl~D~a~g~a~~~~~~---~~~vT~~l~i~f-l~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 145 (153)
++.++|............ ...+|++++|+| ..|...++++.++++....+...+..+++++|+ +|++||+++..-
T Consensus 175 l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~~ 253 (255)
T PF13622_consen 175 LAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDE-DGRLVASSRQEA 253 (255)
T ss_dssp HHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEET-TS-EEEEEEEEE
T ss_pred HHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECC-CCCEEEEEEEEe
Confidence 788888885554443333 234699999997 556666899999999998888888999999998 899999998765
Q ss_pred EE
Q 031768 146 FG 147 (153)
Q Consensus 146 ~i 147 (153)
+|
T Consensus 254 lv 255 (255)
T PF13622_consen 254 LV 255 (255)
T ss_dssp E-
T ss_pred eC
Confidence 53
No 57
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.60 E-value=0.0093 Score=52.11 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=67.3
Q ss_pred EEcCCEEEEEEe---------C---CCCcccHHHHHHHHHHHHHHHHH-hcC---CCeeEEEEE-EEEeeeCCCCCCEEE
Q 031768 48 RVEPGLVSCTFK---------D---RNGNLANGAIANLVDEVGGAVVY-VEG---LPMKVSVDM-SISFVSTAKVNDELE 110 (153)
Q Consensus 48 ~~~~g~v~~~~~---------N---~~G~lHGG~iatl~D~a~g~a~~-~~~---~~~~vT~~l-~i~fl~pa~~g~~l~ 110 (153)
+++++.+++... + ....+||=++.-.+=.+.++.+. ..+ .+...-..+ ++.|++|+.+||+|+
T Consensus 344 ~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~ 423 (464)
T PRK13188 344 ELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLI 423 (464)
T ss_pred EEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEE
Confidence 444667777665 1 24567776655333333344332 212 122233333 789999999999999
Q ss_pred EEEEEEe-ecCcEEEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 111 ITGRVLG-QRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 111 ~~a~v~~-~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
+++++++ ..+.++..+++++. +|+++++++.++++..
T Consensus 424 I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 424 FKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 9999986 55778889999985 7999999999887753
No 58
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.51 E-value=0.00047 Score=58.06 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=54.7
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC--CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR 130 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~--~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~ 130 (153)
|.+|.+|||+++-.+++.+...+.... .+...++| .|+|.+|+..|..|...+.|.....+-.++.++..
T Consensus 212 N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD-~i~F~~pVdvG~~L~f~s~V~yT~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 212 NIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVD-DIEFQKPVDVGCVLTFSSFVTYTDNKSIYVQVKAV 283 (357)
T ss_pred CccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEec-hhhccCcceeeeEEEEeeEEEEecCCceeEEEEEe
Confidence 999999999999999999987655543 33335555 69999999999999999999977777334444444
No 59
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.47 E-value=0.015 Score=42.06 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=51.4
Q ss_pred CCcccHHHHH-HHHHHHHHHHHHhcC---CC-----eeEEEEEEEEeeeCCCCCC-EEEEEEEEEe---ecCcEEEEEEE
Q 031768 62 NGNLANGAIA-NLVDEVGGAVVYVEG---LP-----MKVSVDMSISFVSTAKVND-ELEITGRVLG---QRGGYSGTIVL 128 (153)
Q Consensus 62 ~G~lHGG~ia-tl~D~a~g~a~~~~~---~~-----~~vT~~l~i~fl~pa~~g~-~l~~~a~v~~---~gr~~~~~~~~ 128 (153)
...+=|=++. +++-.+..++..... .. .....--++.|++|+.+|+ .+.+++++.+ ....++..+++
T Consensus 47 ~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~ 126 (138)
T PF07977_consen 47 DPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGT 126 (138)
T ss_dssp S--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEE
Confidence 3455555555 344444444444321 11 1233344899999999999 9999999999 99999999999
Q ss_pred EEECCCCeEEEEEE
Q 031768 129 MRNKATGEVIAEGR 142 (153)
Q Consensus 129 i~~~~~g~lvA~a~ 142 (153)
++. +|++++++.
T Consensus 127 ~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 127 AYV--DGELVAEAE 138 (138)
T ss_dssp EEE--TTEEEEEEE
T ss_pred EEE--CCEEEEEEC
Confidence 998 689999874
No 60
>PLN02370 acyl-ACP thioesterase
Probab=97.39 E-value=0.041 Score=47.57 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=71.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC---------------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG---------------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSG 124 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~---------------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~ 124 (153)
+..|.+.=..|+.++-+++...+...+ ...-|-..++++|.||.+.||.|+++.++...++..+.
T Consensus 152 D~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~ 231 (419)
T PLN02370 152 GADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMR 231 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEE
Confidence 788888888888888666554332211 11247889999999999999999999999999999988
Q ss_pred EEEEEEECCCCeEEEEEEEEEEEe
Q 031768 125 TIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 125 ~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
-+-+++|.++|+++++|+.++.+.
T Consensus 232 Rdf~I~D~~~Ge~la~A~SvWV~m 255 (419)
T PLN02370 232 RDWLVRDCKTGETLTRASSVWVMM 255 (419)
T ss_pred EEEEEEECCCCeEEEEEEEEEEEE
Confidence 899999865799999999887654
No 61
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.37 E-value=0.0071 Score=45.11 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=49.9
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEEEEEeec-CcEEEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 90 KVSVDMSISFVSTAKVNDELEITGRVLGQR-GGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g-r~~~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
..+++ ++.|.+|+.+|+.+.++.++++.+ +.+....++... +|+++++|+..++...
T Consensus 88 ~~gid-~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~V--dg~~v~~a~~~~~~~~ 145 (147)
T COG0764 88 FLGID-NAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATV--DGKVVAEAELLFAGVE 145 (147)
T ss_pred EEEec-ceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEE--CCEEEEEEEEEEEEee
Confidence 46676 899999999999999999999999 888888888886 7999999998887754
No 62
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.22 E-value=0.0026 Score=45.20 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEee
Q 031768 61 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ 118 (153)
Q Consensus 61 ~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~ 118 (153)
+.-++||-.+++++-....-... +........++++|++|+.+||+|.+++++...
T Consensus 49 ~~~ivhG~~~~a~~~~~~~~~~~--~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~ 104 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLGDWLG--PNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEK 104 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHHHHHS--TTECEEEEEEEEEESS--BTTEEEEEEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHHHHhcc--CccceEEEEEEEEEeccccCCCEEEEEEEEEEE
Confidence 34579999999887654433222 112357788999999999999999999999843
No 63
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.14 E-value=0.015 Score=42.70 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCC-C----EEEEEEEEEe--ecCcEEEEEEEEEECCC
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVN-D----ELEITGRVLG--QRGGYSGTIVLMRNKAT 134 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g-~----~l~~~a~v~~--~gr~~~~~~~~i~~~~~ 134 (153)
.-++||-..++++-.+..- + .+.+..+ .+++++|.+|+.+| | ++.++++|.. .+++.+.+++.+.+. +
T Consensus 54 ~~iahG~~~~a~~~~~~~~--~-~~~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~ 128 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTS--W-VGDPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-G 128 (142)
T ss_pred CcEecHHHHHHHHHHHHHH--h-cCCCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-C
Confidence 4568999998888664322 1 1222123 46899999999753 3 8999999984 466788888888875 5
Q ss_pred CeEEEEEEEEEE
Q 031768 135 GEVIAEGRHSLF 146 (153)
Q Consensus 135 g~lvA~a~~t~~ 146 (153)
++++..|++...
T Consensus 129 ~~~~~~~~~~~~ 140 (142)
T PRK13693 129 KKIFGRAIASAK 140 (142)
T ss_pred cEEEEEEEEEEE
Confidence 666777766543
No 64
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.09 E-value=0.01 Score=48.48 Aligned_cols=85 Identities=12% Similarity=-0.008 Sum_probs=67.0
Q ss_pred CcccHHHHHHHHHHHH-HHHHHhcCC-----C-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 031768 63 GNLANGAIANLVDEVG-GAVVYVEGL-----P-MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATG 135 (153)
Q Consensus 63 G~lHGG~iatl~D~a~-g~a~~~~~~-----~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 135 (153)
..+|=-+++-+.|.-. ..++..++. . ...+++-++.|.+|.+.++|+..+.+....+....+.++++|+. +|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~-~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQ-DG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECC-CC
Confidence 3588888887777443 334444432 1 35799999999999999999999999998888888899999997 89
Q ss_pred eEEEEEEEEEEEe
Q 031768 136 EVIAEGRHSLFGR 148 (153)
Q Consensus 136 ~lvA~a~~t~~i~ 148 (153)
+++|+..---.++
T Consensus 271 ~LvAs~~Qegl~r 283 (286)
T PRK10526 271 VLVASTVQEGVMR 283 (286)
T ss_pred CEEEEEEeeEEEE
Confidence 9999988665554
No 65
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=97.02 E-value=0.0037 Score=44.66 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=37.1
Q ss_pred eeEEEEEEEEeeeCCCCCCEEEEEEEEE----eec---CcEEEEEEEEEECCCCeEEEE
Q 031768 89 MKVSVDMSISFVSTAKVNDELEITGRVL----GQR---GGYSGTIVLMRNKATGEVIAE 140 (153)
Q Consensus 89 ~~vT~~l~i~fl~pa~~g~~l~~~a~v~----~~g---r~~~~~~~~i~~~~~g~lvA~ 140 (153)
..+-.+.++.|.+|+++||.|.++++|. |.| ..+..++.+++|. +|+++++
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 3577888999999999999999999997 432 2234556788886 8999985
No 66
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.02 E-value=0.013 Score=43.47 Aligned_cols=82 Identities=12% Similarity=0.005 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcCCCe-eEEEEEEEEeeeCCCCCCEEEEEEEEEe----ecC-cEEEEEEEEEECCCCe
Q 031768 63 GNLANGAIANLVDEVGGAVVYVEGLPM-KVSVDMSISFVSTAKVNDELEITGRVLG----QRG-GYSGTIVLMRNKATGE 136 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~a~~~~~~~~-~vT~~l~i~fl~pa~~g~~l~~~a~v~~----~gr-~~~~~~~~i~~~~~g~ 136 (153)
-++||-.+++++.....-.....+... ..-...+++|++|+.+||+|.++++|.. .+. ..+++++++.-....+
T Consensus 57 ~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (149)
T cd03450 57 TIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDK 136 (149)
T ss_pred eEECHHHHHHHHHHHHHhcccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCC
Confidence 468999988887665433211111111 1123347999999999999999999982 222 3677777777654567
Q ss_pred EEEEEEEE
Q 031768 137 VIAEGRHS 144 (153)
Q Consensus 137 lvA~a~~t 144 (153)
+...++-.
T Consensus 137 p~~~~~~~ 144 (149)
T cd03450 137 PACVAEWI 144 (149)
T ss_pred ceEEEEEE
Confidence 77776644
No 67
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.94 E-value=0.02 Score=42.82 Aligned_cols=82 Identities=21% Similarity=0.153 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCC-e-eEEEEEEEEeeeCCCCCCEEEEEEEEEeec----CcEEEEEEEEEECCCCeE
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLP-M-KVSVDMSISFVSTAKVNDELEITGRVLGQR----GGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~-~-~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g----r~~~~~~~~i~~~~~g~l 137 (153)
+.||-..++++ +++........ . ..-.--+++|.+|+.+||+|.++.+++... +.+..++.+..+. +|++
T Consensus 69 iahG~~t~a~~---~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~-~g~~ 144 (159)
T COG2030 69 IAHGMLTLALA---MGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQ-EGEL 144 (159)
T ss_pred ehhHHHHHHHH---HHHHHHhccCcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEcc-CCcE
Confidence 67887776654 33322222211 1 122333799999999999999999998432 2667788888886 7889
Q ss_pred EEEEEEEEEEec
Q 031768 138 IAEGRHSLFGRQ 149 (153)
Q Consensus 138 vA~a~~t~~i~~ 149 (153)
+....++..+..
T Consensus 145 v~~~~~~~~~~~ 156 (159)
T COG2030 145 VLTLEATVLVLR 156 (159)
T ss_pred EEEEEEeEeEee
Confidence 888887766553
No 68
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=96.89 E-value=0.11 Score=38.69 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=42.1
Q ss_pred EEEeeeCCCCCC-EEEEEEEEEeec----CcEEEEEEEEEECCCCeEEEEEEEE
Q 031768 96 SISFVSTAKVND-ELEITGRVLGQR----GGYSGTIVLMRNKATGEVIAEGRHS 144 (153)
Q Consensus 96 ~i~fl~pa~~g~-~l~~~a~v~~~g----r~~~~~~~~i~~~~~g~lvA~a~~t 144 (153)
++.|.+|+.+|+ .|.+++++.+.+ +.++..++.++. +|+++++++..
T Consensus 92 ~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~ 143 (150)
T cd01287 92 EWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDI 143 (150)
T ss_pred EEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEcc
Confidence 799999999998 899999999886 499999999997 69999999853
No 69
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.83 E-value=0.02 Score=47.01 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=78.5
Q ss_pred eEEEEEcCCEEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEee
Q 031768 44 IRVDRVEPGLVSCTFK-----DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ 118 (153)
Q Consensus 44 i~~~~~~~g~v~~~~~-----N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~ 118 (153)
+.++.++++.-+.+-. ++.+.+.||-+++= +..+|..+.... .+--+|+..|++...+..+|.-..+-+|.
T Consensus 14 l~l~~lD~n~f~~~~l~~g~~~~~~~~fGG~i~sQ---aLaAA~~TV~e~-f~p~SlH~YFI~~gd~~~pI~Y~V~rird 89 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKGREIPSNHAYGGQIASQ---ALAAASKTVEEM-FIPHSLHCYFILVGDPNIPIIYDVKRIRD 89 (294)
T ss_pred heeeecCCCceecccCCccccccCcccccceehHH---HHHHHHhccccc-cccceeeeeeeecCCCCCceEEEeeeecC
Confidence 5667777775444433 67889999988763 344444444332 24467999999999999999999999999
Q ss_pred cCcEEEEEEEEEECCCCeEEEEEEEEEEEecCCC
Q 031768 119 RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPSK 152 (153)
Q Consensus 119 gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~~~~k 152 (153)
||+.+.-.++... +|++|-++..+|-...+|+
T Consensus 90 Gr~F~~R~V~AvQ--~~k~If~~qiSF~~~~ks~ 121 (294)
T KOG3016|consen 90 GRNFATRSVDAVQ--KGKTIFTLQISFQQSEKSS 121 (294)
T ss_pred CceeEEEEEEEEE--CCeEEEEEEEEEccccCCC
Confidence 9999999999997 6999999998888655543
No 70
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.80 E-value=0.025 Score=40.56 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=46.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
.-++||-.+++++..+..-. ...+ ....-..++++|.+|+.+||+|.++.+. .++ .+.+++++.+ +|+++.++
T Consensus 44 ~~iahG~~t~a~~~~~~~~~-~~~~-~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~~--~g~~v~~g 116 (122)
T cd03448 44 RPILHGLCTYGFAARAVLEA-FADG-DPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVVE--RDVVVLSN 116 (122)
T ss_pred CceehhHHHHHHHHHHHHHH-hcCC-CcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEcc--CCcEEEEC
Confidence 35689988888876554211 1112 2233455699999999999999988874 444 4455666643 57776554
No 71
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.72 E-value=0.0072 Score=49.61 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHHHHH-HHHhcCC-----C-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 031768 63 GNLANGAIANLVDEVGGA-VVYVEGL-----P-MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATG 135 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~-a~~~~~~-----~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 135 (153)
-.+|-=.++=+-|...-. |...++. . ..+|+|=++-|+||.+.+||+....+.-.....-+++++++++. +|
T Consensus 192 ~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~r-~G 270 (289)
T COG1946 192 PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFDR-DG 270 (289)
T ss_pred HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEEcC-CC
Confidence 346666666666766543 4444542 2 46899999999999999999998888876666667799999997 89
Q ss_pred eEEEEEEEEEEEec
Q 031768 136 EVIAEGRHSLFGRQ 149 (153)
Q Consensus 136 ~lvA~a~~t~~i~~ 149 (153)
+++|...--..+..
T Consensus 271 ~LiA~~~QEG~~r~ 284 (289)
T COG1946 271 QLIASVVQEGLIRY 284 (289)
T ss_pred CEEEEEeeeEEEec
Confidence 99998876555543
No 72
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=96.48 E-value=0.016 Score=52.68 Aligned_cols=81 Identities=12% Similarity=-0.012 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEee--c----CcEEEEEEEEEECCCCeE
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ--R----GGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~--g----r~~~~~~~~i~~~~~g~l 137 (153)
+.||-.+++++...... ...+....-...-+++|++|+.+||+|.++++|+.. . ..++.+++++.|. +|++
T Consensus 575 Ia~G~l~~sl~~~l~~~--~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq-~G~~ 651 (663)
T TIGR02278 575 VAHGYFVLSAAAGLFVD--PAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQ-NGEP 651 (663)
T ss_pred eeCHHHHHHHHHHHhhc--cCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcC-CCCE
Confidence 68888888888443211 001111001122389999999999999999999833 1 1267888999986 7999
Q ss_pred EEEEEEEEEE
Q 031768 138 IAEGRHSLFG 147 (153)
Q Consensus 138 vA~a~~t~~i 147 (153)
+.++....++
T Consensus 652 Vl~~~~~~lv 661 (663)
T TIGR02278 652 VATYDVLTLV 661 (663)
T ss_pred EEEEEEHHhc
Confidence 9999876554
No 73
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.36 E-value=0.024 Score=48.48 Aligned_cols=80 Identities=18% Similarity=0.065 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHHHHH-HHHhcCC---C-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 63 GNLANGAIANLVDEVGGA-VVYVEGL---P-MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 63 G~lHGG~iatl~D~a~g~-a~~~~~~---~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
-.+|=-+++-+.|...-. ++..++. . ..++++-++.|++|...++|+..+.+....+...++.++++|+. +|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~~~-~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMFNR-KGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEECC-CCCE
Confidence 367888899999976543 3333322 1 25789999999999999999999999998888888899999997 8999
Q ss_pred EEEEEE
Q 031768 138 IAEGRH 143 (153)
Q Consensus 138 vA~a~~ 143 (153)
||+.+-
T Consensus 404 vAs~~Q 409 (413)
T PLN02868 404 VVSLTQ 409 (413)
T ss_pred EEEEEe
Confidence 998763
No 74
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.22 E-value=0.025 Score=51.53 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCC-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeec------CcEEEEEEEEEECCCCe
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLP-MKVSVDMSISFVSTAKVNDELEITGRVLGQR------GGYSGTIVLMRNKATGE 136 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g------r~~~~~~~~i~~~~~g~ 136 (153)
++||-.+++++-....- ...+.. ...-.+ +++|++|+.+||+|+++.+|+... ..++.+++++.|. +|+
T Consensus 587 ia~G~l~~sl~~~l~~~--~~~~~~~~~~g~~-~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~G~ 662 (675)
T PRK11563 587 VAHGYFVLSAAAGLFVD--PAPGPVLANYGLE-NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQ-DGE 662 (675)
T ss_pred eeCHHHHHHHHHHHhhc--cCccchhhhcccc-eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEEC-CCC
Confidence 57888777776543310 000100 001112 799999999999999999998441 2377889999986 899
Q ss_pred EEEEEEEEEEE
Q 031768 137 VIAEGRHSLFG 147 (153)
Q Consensus 137 lvA~a~~t~~i 147 (153)
++.++....++
T Consensus 663 ~V~~~~~~~lv 673 (675)
T PRK11563 663 LVATYDILTLV 673 (675)
T ss_pred EEEEEEEHHhc
Confidence 99999876554
No 75
>PLN02864 enoyl-CoA hydratase
Probab=95.98 E-value=0.18 Score=41.81 Aligned_cols=78 Identities=8% Similarity=-0.120 Sum_probs=48.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEE
Q 031768 62 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 141 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a 141 (153)
.-++||=+.++++-.+..-.. .......-.+++++|.+|+.+||+|.++.+. .++ .+..++.+ +. +|+++.++
T Consensus 227 ~~IaHGm~t~g~~~~~~~~~~--~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~~~-~v~~~~~~-~~-~g~~vl~G 299 (310)
T PLN02864 227 RPILHGLCTLGFAVRAVIKCF--CNGDPTAVKTISGRFLLHVYPGETLVTEMWL--EGL-RVIYQTKV-KE-RNKAVLSG 299 (310)
T ss_pred CceeccHHHHHHHHHHHHhhh--cCCCCceEEEEEEEEcCCccCCCEEEEEEEe--CCC-EEEEEEEE-ec-CCeEEEEE
Confidence 456899777776544321111 1112223356899999999999999777653 343 44556665 33 68888888
Q ss_pred EEEEE
Q 031768 142 RHSLF 146 (153)
Q Consensus 142 ~~t~~ 146 (153)
.++.-
T Consensus 300 ~a~~~ 304 (310)
T PLN02864 300 YVDLR 304 (310)
T ss_pred EEEEe
Confidence 77654
No 76
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=95.76 E-value=0.78 Score=36.81 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=63.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcC---------------CCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEG---------------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSG 124 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~---------------~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~ 124 (153)
+..|.+.=-.++.++-++++..+...| ...-+-....+++.++...|+.|.++.++...+|-.++
T Consensus 16 d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~ 95 (261)
T PF01643_consen 16 DPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAY 95 (261)
T ss_dssp -TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEE
Confidence 567777777777777666654333222 11237788899999999999999999999999999999
Q ss_pred EEEEEEECCCCeEEEEEEEEEEEec
Q 031768 125 TIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 125 ~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
=+-++++.++|+++++|+..|.+.-
T Consensus 96 R~f~i~d~~~G~~l~~a~s~WvliD 120 (261)
T PF01643_consen 96 RDFEIYDAEDGELLARATSIWVLID 120 (261)
T ss_dssp EEEEEE--TTS-EEEEEEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEEEEEEE
Confidence 9999999338999999999887653
No 77
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=95.75 E-value=0.097 Score=38.33 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=51.8
Q ss_pred ccHHHHHHHHHHHHHH-HHHhcC--C-CeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEE
Q 031768 65 LANGAIANLVDEVGGA-VVYVEG--L-PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 140 (153)
Q Consensus 65 lHGG~iatl~D~a~g~-a~~~~~--~-~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~ 140 (153)
+|-=+++=+-|...-- +...++ . ...+|+|=++-|.+|.+.++++.-+.+--.....-.++++++++..+|++||+
T Consensus 46 ~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas 125 (131)
T PF02551_consen 46 IHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVAS 125 (131)
T ss_dssp CCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEE
T ss_pred HhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEE
Confidence 4444444444544332 222333 1 23469999999999999999999988888888888889999993348999998
Q ss_pred EE
Q 031768 141 GR 142 (153)
Q Consensus 141 a~ 142 (153)
..
T Consensus 126 ~~ 127 (131)
T PF02551_consen 126 VV 127 (131)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 78
>PLN02864 enoyl-CoA hydratase
Probab=95.60 E-value=0.13 Score=42.62 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=47.8
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEEEEE--e-ecC-cEEEEEEEEEECCCCeEEEEEEEEEEEecC
Q 031768 90 KVSVDMSISFVSTAKVNDELEITGRVL--G-QRG-GYSGTIVLMRNKATGEVIAEGRHSLFGRQP 150 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a~v~--~-~gr-~~~~~~~~i~~~~~g~lvA~a~~t~~i~~~ 150 (153)
.+-.+-++.|.||++.++.+.+++++. + +|+ .+..++.++.++.+|+++++.+.|++++..
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 466677899999999999999999996 2 333 234567777775589999999999988753
No 79
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=95.49 E-value=0.078 Score=43.61 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=70.5
Q ss_pred eEEEEEcCCEEEEEEe-CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcE
Q 031768 44 IRVDRVEPGLVSCTFK-DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGY 122 (153)
Q Consensus 44 i~~~~~~~g~v~~~~~-N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~ 122 (153)
++++.++++-.+-.-+ -..-.+.||-+.+-+ ..+|..+.+... +-=+++.-|++|....++|.-..+.+|.||++
T Consensus 12 L~Le~le~~lfrG~s~~~g~~~vFGGqvvaQA---L~Aa~~TV~~~r-~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sf 87 (289)
T COG1946 12 LDLERLESNLFRGSSPDSGLRRVFGGQVVAQA---LVAALRTVPEDR-VVHSLHSYFLRPGDPEQPIIYDVERLRDGRSF 87 (289)
T ss_pred hhcccccccceecCCCCcCCccccccchHHHH---HHHHHhhcCCCC-CcceehhhhcCCCCcCCceEEEEEeccCCCce
Confidence 4455555554433333 234567788776543 223333444332 33457789999999999999999999999999
Q ss_pred EEEEEEEEECCCCeEEEEEEEEEEEec
Q 031768 123 SGTIVLMRNKATGEVIAEGRHSLFGRQ 149 (153)
Q Consensus 123 ~~~~~~i~~~~~g~lvA~a~~t~~i~~ 149 (153)
+.-+++... +|++|..++++|-+..
T Consensus 88 s~rrV~aiQ--~g~~If~~~ASF~~~e 112 (289)
T COG1946 88 STRRVDAIQ--HGKLIFSATASFQVPE 112 (289)
T ss_pred EeEEEEEEE--CCEEEEEEEeeccCCC
Confidence 999999997 6999999999887643
No 80
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=94.07 E-value=2 Score=32.60 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=40.2
Q ss_pred EEEEEEEEeeeCCCCCCEE-EEEEEEEee---cCcEEEEEEEEEECCCCeEEEEEE
Q 031768 91 VSVDMSISFVSTAKVNDEL-EITGRVLGQ---RGGYSGTIVLMRNKATGEVIAEGR 142 (153)
Q Consensus 91 vT~~l~i~fl~pa~~g~~l-~~~a~v~~~---gr~~~~~~~~i~~~~~g~lvA~a~ 142 (153)
..++ +.+|.+|+.+|+.+ ..+.++.+. .+.+...+|+++. +|+++|+++
T Consensus 104 ~gi~-~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~ 156 (169)
T TIGR01749 104 LGVG-EVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVLV--DGRLIYTAS 156 (169)
T ss_pred eecc-EEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEEE--CCEEEEEEE
Confidence 4445 89999999999886 788888764 4568999999997 689999966
No 81
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=93.38 E-value=2.7 Score=31.93 Aligned_cols=45 Identities=9% Similarity=-0.031 Sum_probs=39.2
Q ss_pred EEEeeeCCCCCCE-EEEEEEEEee---cCcEEEEEEEEEECCCCeEEEEEE
Q 031768 96 SISFVSTAKVNDE-LEITGRVLGQ---RGGYSGTIVLMRNKATGEVIAEGR 142 (153)
Q Consensus 96 ~i~fl~pa~~g~~-l~~~a~v~~~---gr~~~~~~~~i~~~~~g~lvA~a~ 142 (153)
+..|.+++.+|+. +..+.++.+. .+.+...+|+++. +|+++|+++
T Consensus 111 ~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~ 159 (172)
T PRK05174 111 EVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVLV--DGEEIYTAK 159 (172)
T ss_pred EEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEEE--CCEEEEEEE
Confidence 7999999999988 8898888875 5678999999997 689999994
No 82
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=93.25 E-value=1.6 Score=37.12 Aligned_cols=90 Identities=18% Similarity=0.323 Sum_probs=68.3
Q ss_pred CCCCcccHH-HHHHHHHHHHHHHHHhcC-------C-C-eeEEEEEE-EEeeeCCCCC-CEEEEEEEEEeecCcEEEEEE
Q 031768 60 DRNGNLANG-AIANLVDEVGGAVVYVEG-------L-P-MKVSVDMS-ISFVSTAKVN-DELEITGRVLGQRGGYSGTIV 127 (153)
Q Consensus 60 N~~G~lHGG-~iatl~D~a~g~a~~~~~-------~-~-~~vT~~l~-i~fl~pa~~g-~~l~~~a~v~~~gr~~~~~~~ 127 (153)
|..|..++| -+.-++|++..+|.+.+. . + ..||.... |+|.+|...| ..+.+.|.|...|++..-+.+
T Consensus 21 ~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i 100 (357)
T KOG2763|consen 21 NHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKSSMEVSI 100 (357)
T ss_pred ccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEeccccceEEEE
Confidence 677999999 599999999888765431 1 1 24666665 9999988777 567788999999999988888
Q ss_pred EEEEC--CC--CeEEEEEEEEEEEec
Q 031768 128 LMRNK--AT--GEVIAEGRHSLFGRQ 149 (153)
Q Consensus 128 ~i~~~--~~--g~lvA~a~~t~~i~~ 149 (153)
.+..+ .+ -.++-+|..+|.-++
T Consensus 101 ~V~q~~~~~~~~~~~~kA~f~fVard 126 (357)
T KOG2763|consen 101 YVMQEDLATGEKSLVLKATFTFVARD 126 (357)
T ss_pred EEEEehhccchhhheeeeEEEEEEec
Confidence 88872 12 357788888887663
No 83
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=93.13 E-value=0.41 Score=39.49 Aligned_cols=79 Identities=20% Similarity=0.126 Sum_probs=63.5
Q ss_pred CCcccHHHHHHHHHHHHHH-HHHhcCC----CeeEEEEEEEEeeeC-CCCCCEEEEEEEEEeecCcEEEEEEEEEECCCC
Q 031768 62 NGNLANGAIANLVDEVGGA-VVYVEGL----PMKVSVDMSISFVST-AKVNDELEITGRVLGQRGGYSGTIVLMRNKATG 135 (153)
Q Consensus 62 ~G~lHGG~iatl~D~a~g~-a~~~~~~----~~~vT~~l~i~fl~p-a~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g 135 (153)
.-.+|==+++-+-|..+-- +++.+.. ...+|++=+|-|.++ +++++|+.-++.....+..-+++++.+|+. ||
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw~r-dG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLWNR-DG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEEcc-CC
Confidence 4557777888888988764 3343321 245788888999998 899999999999999999999999999996 89
Q ss_pred eEEEEE
Q 031768 136 EVIAEG 141 (153)
Q Consensus 136 ~lvA~a 141 (153)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 998864
No 84
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=92.04 E-value=4.3 Score=32.15 Aligned_cols=97 Identities=24% Similarity=0.208 Sum_probs=62.8
Q ss_pred cceEEEEEcCCEEEEEEe---CC-----CCcccHHHHHHHHHHHHHHHH--Hhc-C--CC--eeEEEEEEEEeee-CCCC
Q 031768 42 RGIRVDRVEPGLVSCTFK---DR-----NGNLANGAIANLVDEVGGAVV--YVE-G--LP--MKVSVDMSISFVS-TAKV 105 (153)
Q Consensus 42 ~gi~~~~~~~g~v~~~~~---N~-----~G~lHGG~iatl~D~a~g~a~--~~~-~--~~--~~vT~~l~i~fl~-pa~~ 105 (153)
.+++-... +.+.+++. +. .-.+|. +++|.++-.+. ... . .. ..+.++ ++.+.+ |.+.
T Consensus 174 r~i~~i~~--~~~~~~~~~~~~~~~~~~~~~l~P----~llD~~lq~~~~~~~~~~~~~~~~lP~~i~-~~~~~~~~~~~ 246 (295)
T PF14765_consen 174 RGIESIRR--GEALAEVRLPDDPASDPDPFVLHP----ALLDAALQAAGLALWEDDDRGRVFLPVSIE-RIRIFRAPPPP 246 (295)
T ss_dssp HHEEEEEE--SEEEEEEECGTTTGGGGGGSSS-H----HHHHHHHHGHGCCHTSTTTTTSEEEEEEEE-EEEESSS--SS
T ss_pred cchhhhhh--ccceEEEEEEeeccCCCCceeECH----HHHHHHHHHHHHHhccccCCCCEEcccEeC-EEEEEeccCCC
Confidence 35554444 66666665 22 123343 67788876331 111 1 12 225555 688884 6677
Q ss_pred CCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEE
Q 031768 106 NDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 146 (153)
Q Consensus 106 g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~ 146 (153)
++.+.+.++..+.+......++.++|+ +|+++++-+.-.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~dv~v~d~-~G~~~~~~~gl~~ 286 (295)
T PF14765_consen 247 GDRLYVYARLVKSDDDTITGDVTVFDE-DGRVVAELEGLTF 286 (295)
T ss_dssp TSEEEEEEEEESTTTTEEEEEEEEEET-TSBEEEEEEEEEE
T ss_pred CCEEEEEEEEecccceEEEEEEEEECC-CCCEEEEEccEEE
Confidence 899999999999899999999999996 8999998886433
No 85
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=89.67 E-value=5.7 Score=28.21 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=42.2
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEEEEEeecC-----cEEEEEEEEEECCCCeEEEEEEEEEE
Q 031768 90 KVSVDMSISFVSTAKVNDELEITGRVLGQRG-----GYSGTIVLMRNKATGEVIAEGRHSLF 146 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr-----~~~~~~~~i~~~~~g~lvA~a~~t~~ 146 (153)
.+-.+++++|.+++....++.++.++.-... +-..++++++. +|+++|+++.++-
T Consensus 72 ~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~t 131 (132)
T PF03756_consen 72 FVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTFT 131 (132)
T ss_pred EEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEE--CCEEEEEEEEEEE
Confidence 4677899999999977778888887763322 35567888887 6999999998763
No 86
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=87.52 E-value=5.5 Score=31.86 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeec-CcEEEEEEEEEECCCCeEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQR-GGYSGTIVLMRNKATGEVI 138 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~g-r~~~~~~~~i~~~~~g~lv 138 (153)
..+|.++--....++-++....... . ..-.++.|+|.+.+..|+.|.+...+.... .....+.-.+.++ +|+.+
T Consensus 178 D~N~HVNN~~Yl~w~~d~lp~~~~~---~-~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~~~-~g~~~ 252 (261)
T PF01643_consen 178 DMNGHVNNARYLDWALDALPEEFLE---K-YQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIRNE-DGEEV 252 (261)
T ss_dssp ETTTCE-HHHHHHHHHCCS-HHHHC---C-EEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEECT--TCEE
T ss_pred CCCCCcCHHHHHHHHHHhCcchhhc---c-CCcEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEEcC-CCceE
Confidence 4567777666665554443332221 1 234678999999999999999888875333 3444566778876 59999
Q ss_pred EEEEEEE
Q 031768 139 AEGRHSL 145 (153)
Q Consensus 139 A~a~~t~ 145 (153)
|.++..|
T Consensus 253 ~~~~~~W 259 (261)
T PF01643_consen 253 ARARTEW 259 (261)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998655
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=78.46 E-value=20 Score=28.87 Aligned_cols=57 Identities=7% Similarity=-0.025 Sum_probs=49.1
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEEEEe
Q 031768 90 KVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 148 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~~i~ 148 (153)
-+-....++++||..-|+.++++-+.....++.+..+.++.+ .|..+.+..++|.+.
T Consensus 56 WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilm 112 (250)
T COG3884 56 WIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILM 112 (250)
T ss_pred EEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEE
Confidence 366888999999999999999999999999999999999998 466666777777664
No 88
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=62.92 E-value=27 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=35.7
Q ss_pred CCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEE
Q 031768 105 VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145 (153)
Q Consensus 105 ~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 145 (153)
.|..+.+.++|-|...-+..+.+.+.|.++|+++...+..+
T Consensus 79 ~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 79 LGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred cCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 45678899999999999999999999988999998877554
No 89
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=59.16 E-value=35 Score=36.31 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHHHHH-HHhc---CCC-eeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEEE
Q 031768 71 ANLVDEVGGAV-VYVE---GLP-MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 145 (153)
Q Consensus 71 atl~D~a~g~a-~~~~---~~~-~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t~ 145 (153)
.-++|.++=++ +|.. +.. ....+. ++...+|.+.|+..++..+|.+...+...++++++|. +|+++++-....
T Consensus 2493 p~~~D~~~Q~~~vW~~~~~g~~sLP~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~-~g~~~~~~~~~~ 2570 (2582)
T TIGR02813 2493 PFAEDILLQAMLVWARLKYGAASLPSSIG-EFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELYHQ-DGRLSSEMKSAK 2570 (2582)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCcccc-eEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEECC-CCcEEEEEeCCe
Confidence 45677775443 3432 221 112233 6778888889999999999999999999999999997 899999877654
Q ss_pred EE
Q 031768 146 FG 147 (153)
Q Consensus 146 ~i 147 (153)
..
T Consensus 2571 ~~ 2572 (2582)
T TIGR02813 2571 VT 2572 (2582)
T ss_pred EE
Confidence 43
No 90
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=55.35 E-value=23 Score=23.36 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEE
Q 031768 90 KVSVDMSISFVSTAKVNDELEITG 113 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a 113 (153)
+++.+.++.++.++++||++.+.+
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEEec
Confidence 577888999998899999998765
No 91
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=55.21 E-value=1.1e+02 Score=24.73 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEE
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYS 123 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~ 123 (153)
...|.+.--..-+.+-+.++.-....-.+ ..+++.|.+|+.+|+.|++.-++...+..-.
T Consensus 165 D~f~HvNNskY~~wi~e~l~~~~~~~~~p----~r~~l~y~keva~G~~iti~~e~~~~~s~~~ 224 (250)
T COG3884 165 DMFGHVNNSKYWSWIEEVLGSEFLKLYGP----LRLTLEYVKEVAPGEKITIVYEVHPLESKHQ 224 (250)
T ss_pred ccccccccceehHHHHHHHhhhhHhhccc----ceeEEEEEcccCCCCeEEEEEEEcccCceee
Confidence 55666666666677766666544333222 5578899999999999999998887766543
No 92
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=52.57 E-value=65 Score=21.25 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=29.1
Q ss_pred eCC-CCCCEEEEEEEEEeecCc-----EEEEEEEEEECCCCeEEEEEEE
Q 031768 101 STA-KVNDELEITGRVLGQRGG-----YSGTIVLMRNKATGEVIAEGRH 143 (153)
Q Consensus 101 ~pa-~~g~~l~~~a~v~~~gr~-----~~~~~~~i~~~~~g~lvA~a~~ 143 (153)
||+ ++||.|.+++-+...... -.-+.++|.|+ +|+.+.+-..
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp-~g~~v~~~~~ 55 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDP-SGNEVFRWSV 55 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEET-TSEEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEECC-CCCEEEEEEe
Confidence 555 679999999888766521 13467888898 7888876554
No 93
>PLN02370 acyl-ACP thioesterase
Probab=51.99 E-value=95 Score=27.05 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEE-----ee-cCcEEEEEEEEEECC
Q 031768 60 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVL-----GQ-RGGYSGTIVLMRNKA 133 (153)
Q Consensus 60 N~~G~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~-----~~-gr~~~~~~~~i~~~~ 133 (153)
..+|.+.-.....++=++.-.-... . ..-..+.|+|.+.+..|+.|.+...+. .. ......+...+.. +
T Consensus 314 D~NgHVNNvkYi~Wild~lP~e~l~-~---~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~~-~ 388 (419)
T PLN02370 314 DVNQHVNNVKYIGWILESAPPPIME-S---HELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLRL-E 388 (419)
T ss_pred cccCccccHHHHHHHHhhCchhhhh-c---ceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEEc-C
Confidence 4556666666555543333221111 1 234678999999999999988776542 11 1110112233333 4
Q ss_pred CCeEEEEEEEEEEEe
Q 031768 134 TGEVIAEGRHSLFGR 148 (153)
Q Consensus 134 ~g~lvA~a~~t~~i~ 148 (153)
+|+.++.++..|.-.
T Consensus 389 dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 389 DGAEIVRGRTEWRPK 403 (419)
T ss_pred CCeEEEEEEEEEEEC
Confidence 899999999776544
No 94
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=51.39 E-value=11 Score=30.55 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEE
Q 031768 64 NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIA 139 (153)
Q Consensus 64 ~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 139 (153)
++||=+..++.--+++... . +.+-..++++|-+|+-+|++|.. .+-+.|+++.|=...+. .|++|-
T Consensus 193 ilHGlc~lg~~~riv~a~~---~--~a~y~~~kvrF~spV~pGdtll~--~~wK~g~r~~fqt~vv~---t~~~v~ 258 (272)
T KOG1206|consen 193 ILHGLCTLGFSARIVGAQF---P--PAVYKAQKVRFSSPVGPGDTLLV--LVWKQGLRITFQTYVVE---TGKIVI 258 (272)
T ss_pred hhhhHHHhhhhHHHHHHhc---C--chhhheeeeeecCCCCCchhHHH--HHHhhhceeEEEEEEEE---EEEEEe
Confidence 4899777665444333211 1 24567789999999999997543 34467777655433332 344543
No 95
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=40.65 E-value=22 Score=26.66 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=16.2
Q ss_pred cCCEEEEEEeCCCCcccH
Q 031768 50 EPGLVSCTFKDRNGNLAN 67 (153)
Q Consensus 50 ~~g~v~~~~~N~~G~lHG 67 (153)
+++.|.+++.++.|.+||
T Consensus 130 ~~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 130 PEDEVLVRLESPGGMVHG 147 (155)
T ss_pred CCCeEEEEEecCCceeec
Confidence 447899999999999998
No 96
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=38.55 E-value=1e+02 Score=20.61 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred EEEeeeCCCCCC----EEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEE
Q 031768 96 SISFVSTAKVND----ELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144 (153)
Q Consensus 96 ~i~fl~pa~~g~----~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t 144 (153)
+|.-..|.+ |+ .+.+.++-.-. -+.+..++.|. +|++++++..+
T Consensus 2 ~I~V~~P~p-g~~V~sp~~V~G~A~~F---Egtv~~rv~D~-~g~vl~e~~~~ 49 (88)
T PF10648_consen 2 NIWVTAPAP-GDTVSSPVKVSGKARVF---EGTVNIRVRDG-HGEVLAEGFVT 49 (88)
T ss_pred ceEEcCCCC-cCCcCCCEEEEEEEEEe---eeEEEEEEEcC-CCcEEEEeeEE
Confidence 455566764 44 34444443322 23346777786 78888666543
No 97
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=32.21 E-value=1e+02 Score=25.25 Aligned_cols=73 Identities=21% Similarity=0.090 Sum_probs=50.1
Q ss_pred CCCC-cccHHHHHHHHHHHHHHHHHhcCCCeeEEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEE
Q 031768 60 DRNG-NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVI 138 (153)
Q Consensus 60 N~~G-~lHGG~iatl~D~a~g~a~~~~~~~~~vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lv 138 (153)
|+.| ++||-.+++++=.++-- ...+ .-..+.-+=|+|+-.++++++.++....|+--.+ ..+. +|.++
T Consensus 198 gYpgLVvhGPl~atlll~~~~~----~~pq--~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~~w----~~~~-~~pv~ 266 (273)
T COG3777 198 GYPGLVVHGPLIATLLLRAFQP----FLPQ--PIRRFRFRNLSPAFPNETLTICGSLSGSGGAELW----TIRG-DGPVA 266 (273)
T ss_pred CCCCceecchHHHHHHHHHhhh----hccc--cchheeccccccccCCCCeeEeeEecCCCceEEE----EecC-Ccchh
Confidence 7665 58999999998555421 1122 1355677789999999999999999988865422 1122 56677
Q ss_pred EEEEE
Q 031768 139 AEGRH 143 (153)
Q Consensus 139 A~a~~ 143 (153)
.+|+.
T Consensus 267 mrarV 271 (273)
T COG3777 267 MRARV 271 (273)
T ss_pred heeee
Confidence 77764
No 98
>PF09252 Feld-I_B: Allergen Fel d I-B chain; InterPro: IPR015332 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans. The nomenclature system uses the first three letters of the genus, followed by the first letter of the species name, followed by a number (additional letters can be added to the name as required to discriminate between similar designations). Fel d 1 is allergen 1 from Felis silvestris catus (Cat), which is an important agent in human allergic reactions []. The protein is expressed in saliva and sebaceous glands. The complete primary structure of Fel d 1 has been determined []. The allergen is tetrameric glycoprotein consisting of two disulphide-linked heterodimers of chains 1 and 2, which have been shown to be encoded by different genes. Fel d 1 chains 1 and 2 share structural similarity with uteroglobin, a secretoglobin superfamily member; chain 2 is a glycoprotein with N-linked oligosaccharides. This entry represents Fel d 1 chain 2.; GO: 0005615 extracellular space; PDB: 1ZKR_B 1PUO_B 2EJN_B.
Probab=31.56 E-value=22 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.408 Sum_probs=12.8
Q ss_pred ChHHHHHHhhcccccc
Q 031768 1 MEKARQCLELNQEESD 16 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (153)
+||||||+.+.+-...
T Consensus 36 feKIQdCynE~Glk~K 51 (67)
T PF09252_consen 36 FEKIQDCYNEEGLKAK 51 (67)
T ss_dssp HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhccCchhh
Confidence 4899999998876553
No 99
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=29.28 E-value=97 Score=21.13 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=19.8
Q ss_pred eEEEEEEEEeee------CCCCCCEEEEEE
Q 031768 90 KVSVDMSISFVS------TAKVNDELEITG 113 (153)
Q Consensus 90 ~vT~~l~i~fl~------pa~~g~~l~~~a 113 (153)
+++.+.++.++- ++++||+|.+.+
T Consensus 23 Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHa 52 (90)
T PRK10409 23 GIQRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_pred CeEEEEEEeeecccCCCCccCCCCEEEEec
Confidence 578889999995 588999998765
No 100
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=28.21 E-value=1.6e+02 Score=19.99 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=23.3
Q ss_pred eeeCCCCCCEEEEEEEEE--eecCcEEEEEEEEEECCCCeE
Q 031768 99 FVSTAKVNDELEITGRVL--GQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 99 fl~pa~~g~~l~~~a~v~--~~gr~~~~~~~~i~~~~~g~l 137 (153)
.+++...|+.+.+.++|. |.-+.++|++ ++|. +|.+
T Consensus 5 ~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~--LrD~-~g~i 42 (108)
T cd04316 5 EITPELDGEEVTVAGWVHEIRDLGGIKFVI--LRDR-EGIV 42 (108)
T ss_pred hCchhhCCCEEEEEEEEEeeeccCCeEEEE--EecC-CeeE
Confidence 445555789999999997 3334566654 4654 4543
No 101
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=28.02 E-value=2.6e+02 Score=20.89 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=33.4
Q ss_pred EEEEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeEEEEEEEE
Q 031768 91 VSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 144 (153)
Q Consensus 91 vT~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~lvA~a~~t 144 (153)
..++|-++|...+ .|. |. --|..|.-.....-.+.+|+. +|+++|+++.+
T Consensus 17 ~~vELG~kF~~~~-~G~-vt-gvrfYk~~~ntgthtgsLWsa-~G~lLAt~tft 66 (149)
T PF13313_consen 17 GAVELGVKFRSSV-AGQ-VT-GVRFYKGAGNTGTHTGSLWSA-DGTLLATATFT 66 (149)
T ss_pred CceEEEeEEEecC-CcE-EE-EEEEEeCCCCCCceEEEEECC-CCCEEEEEEEc
Confidence 4577888887776 363 32 234444444455557999997 89999988764
No 102
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=27.71 E-value=1.8e+02 Score=19.67 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=22.9
Q ss_pred EEEEEEEEeecCcEEEEEEEEEE-CCCCeEEEEEE
Q 031768 109 LEITGRVLGQRGGYSGTIVLMRN-KATGEVIAEGR 142 (153)
Q Consensus 109 l~~~a~v~~~gr~~~~~~~~i~~-~~~g~lvA~a~ 142 (153)
+.+-+.=++.|+-+.-+++++++ . +|+++++++
T Consensus 15 ~~v~v~~L~tg~Pv~ga~V~l~~~~-~~~~l~~g~ 48 (97)
T PF11974_consen 15 LLVWVTSLSTGKPVAGAEVELYDSR-NGQVLASGK 48 (97)
T ss_pred EEEEEeeCCCCCccCCCEEEEEECC-CCcEeeeee
Confidence 45555556777777777777777 5 677777775
No 103
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=27.18 E-value=29 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=17.9
Q ss_pred eEEEEEEEEeeeCCCCCCEEEEEE
Q 031768 90 KVSVDMSISFVSTAKVNDELEITG 113 (153)
Q Consensus 90 ~vT~~l~i~fl~pa~~g~~l~~~a 113 (153)
+...+.++.++.++++||++.+.+
T Consensus 25 G~~~~V~~~lv~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 25 GVRREVSLALVPDVKVGDYVLVHA 48 (68)
T ss_dssp TEEEEEEGTTCTSB-TT-EEEEET
T ss_pred CcEEEEEEEEeCCCCCCCEEEEec
Confidence 467788899999999999987653
No 104
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=26.66 E-value=1.6e+02 Score=20.73 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred EEEeeeCCCCCCEEEEEEEEE--eecCcEEEEEEEEEECCCCeE
Q 031768 96 SISFVSTAKVNDELEITGRVL--GQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 96 ~i~fl~pa~~g~~l~~~a~v~--~~gr~~~~~~~~i~~~~~g~l 137 (153)
++.-+.+...|+.|.+.|+|. |.-+.++|++ +.|. +|.+
T Consensus 4 ~~~~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~--LrD~-~g~~ 44 (135)
T cd04317 4 YCGELRESHVGQEVTLCGWVQRRRDHGGLIFID--LRDR-YGIV 44 (135)
T ss_pred ehhhCChhHCCCEEEEEEeEehhcccCCEEEEE--EecC-CeeE
Confidence 344555566789999999997 3333477755 4654 4543
No 105
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=24.94 E-value=1.1e+02 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=23.2
Q ss_pred EcCCEEEEEEe-CCCCccc-HHHHHHHHHHHHH
Q 031768 49 VEPGLVSCTFK-DRNGNLA-NGAIANLVDEVGG 79 (153)
Q Consensus 49 ~~~g~v~~~~~-N~~G~lH-GG~iatl~D~a~g 79 (153)
+..|.++.+|+ +|.|.+| |++-++|+....+
T Consensus 47 ~~~gkv~tRFaPsPtG~LHiGharaalln~~~A 79 (574)
T PTZ00437 47 VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSA 79 (574)
T ss_pred ccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHH
Confidence 35688999999 9999999 5566666655443
No 106
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=24.58 E-value=83 Score=28.25 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=17.1
Q ss_pred cCCEEEEEEe-CCCCccc-HHHHHHHHHHH
Q 031768 50 EPGLVSCTFK-DRNGNLA-NGAIANLVDEV 77 (153)
Q Consensus 50 ~~g~v~~~~~-N~~G~lH-GG~iatl~D~a 77 (153)
+.|.++.||+ +|.|.+| |++-++|+...
T Consensus 8 ~~g~v~tRFAPsPtG~LHiGharaAlln~l 37 (523)
T PLN03233 8 IAGQIVTRFPPEPSGYLHIGHAKAALLNDY 37 (523)
T ss_pred CCCeEEEeeCCCCCCcccHHHHHHHHHHHH
Confidence 4456777777 7777777 44444444443
No 107
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=24.35 E-value=1.9e+02 Score=19.32 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=25.6
Q ss_pred EEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCe
Q 031768 95 MSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 136 (153)
Q Consensus 95 l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~ 136 (153)
-.++|-.=-..|-...+.+++.+.|.. ..++.+++|-.+|+
T Consensus 63 ~~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv~~~~ 103 (105)
T PF04052_consen 63 SQVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDVASGK 103 (105)
T ss_dssp GG--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-----
T ss_pred CCcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEeccccc
Confidence 345555444567788999999999998 78999999965554
No 108
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=22.89 E-value=2.8e+02 Score=19.60 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=23.5
Q ss_pred EEEEEEeeeCCCCCCEEEEEEEEEeecCcEEEEEEEEEECCCCeE
Q 031768 93 VDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEV 137 (153)
Q Consensus 93 ~~l~i~fl~pa~~g~~l~~~a~v~~~gr~~~~~~~~i~~~~~g~l 137 (153)
+++.++-|.| ++.++++++.....+..-...+.....++|.+
T Consensus 5 ~~I~v~GL~p---~~~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 5 VDIRVSGLPP---GQEVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp -EEEEES--T---T-EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred eEEEEeCCCC---CCEEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 3455665555 67899999999776666566676665557754
No 109
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=22.03 E-value=1.2e+02 Score=19.88 Aligned_cols=10 Identities=0% Similarity=-0.150 Sum_probs=3.9
Q ss_pred EEEEEEEEEE
Q 031768 122 YSGTIVLMRN 131 (153)
Q Consensus 122 ~~~~~~~i~~ 131 (153)
..++.+++.|
T Consensus 19 ~~~i~v~v~D 28 (92)
T smart00634 19 AITLTATVTD 28 (92)
T ss_pred cEEEEEEEEC
Confidence 3333333333
No 110
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=21.83 E-value=1.9e+02 Score=18.25 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=18.5
Q ss_pred CcEEEEEEEEEECCCCeEEEEEEEE
Q 031768 120 GGYSGTIVLMRNKATGEVIAEGRHS 144 (153)
Q Consensus 120 r~~~~~~~~i~~~~~g~lvA~a~~t 144 (153)
....-.++++.++ +|++++..+++
T Consensus 41 ~~~G~WrV~V~~~-~G~~l~~~~F~ 64 (66)
T PF11141_consen 41 DQPGDWRVEVVDE-DGQVLGSLRFS 64 (66)
T ss_pred CCCcCEEEEEEcC-CCCEEEEEEEE
Confidence 3555678999997 89999877654
No 111
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.48 E-value=1.5e+02 Score=26.86 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred cCCEEEEEEe-CCCCccc-HHHHHHHHHHHHH
Q 031768 50 EPGLVSCTFK-DRNGNLA-NGAIANLVDEVGG 79 (153)
Q Consensus 50 ~~g~v~~~~~-N~~G~lH-GG~iatl~D~a~g 79 (153)
++|.++.+|. +|.|.+| |.+-++++....+
T Consensus 98 e~g~V~tRFaPsPtG~LHIGharaalln~~~A 129 (567)
T PRK04156 98 EKGKVVMRFAPNPSGPLHLGHARAAILNDEYA 129 (567)
T ss_pred CCCeEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3678999999 9999999 6666666655443
No 112
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=21.43 E-value=2.7e+02 Score=20.68 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=24.5
Q ss_pred EEEEeeeCCCCCCEEE---EEEEEEeecCcEEEEEEEEEECCCCeEEE
Q 031768 95 MSISFVSTAKVNDELE---ITGRVLGQRGGYSGTIVLMRNKATGEVIA 139 (153)
Q Consensus 95 l~i~fl~pa~~g~~l~---~~a~v~~~gr~~~~~~~~i~~~~~g~lvA 139 (153)
+-+.|-+|.+.||+|. .+++|.+.|=+. ..+++. +|+++.
T Consensus 53 i~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~----t~l~~~-~g~~v~ 95 (206)
T PF00924_consen 53 IIILFERPFKVGDRIEIGGVEGRVEEIGLRS----TRLRTW-DGEIVI 95 (206)
T ss_dssp HHHHCC-SS-TT-EEESSS-EEEEEEE-SSE----EEEEET-TS-EEE
T ss_pred HHHhccCCccCCCEEEEEEeehHHHhcCcce----eeeecC-CCCEEE
Confidence 4567888999999998 568888888887 334554 676654
No 113
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=20.85 E-value=2.7e+02 Score=20.60 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=37.1
Q ss_pred EEEEEEEeeeCCCCCCEEEEE----EEEEeecCcEEE---EEEEEEECCCCeEEEEEEEEEEEecCC
Q 031768 92 SVDMSISFVSTAKVNDELEIT----GRVLGQRGGYSG---TIVLMRNKATGEVIAEGRHSLFGRQPS 151 (153)
Q Consensus 92 T~~l~i~fl~pa~~g~~l~~~----a~v~~~gr~~~~---~~~~i~~~~~g~lvA~a~~t~~i~~~~ 151 (153)
..+++|+|=||..-|-.|.-. ++|=|.|=+-+. ..-.+.- .|+.+.-|+-++|..|..
T Consensus 12 ~~~i~V~YsrP~~kGR~IFG~LvPygkvWRtGAN~aT~i~f~~dv~i--gGk~l~AG~Ysl~tiP~~ 76 (145)
T PF11138_consen 12 LTDITVDYSRPSVKGRKIFGGLVPYGKVWRTGANEATTITFSKDVTI--GGKKLKAGTYSLFTIPGE 76 (145)
T ss_pred CeEEEEEECCCCcCCcccccccccCCCeecCCCCcceEEEECCCeEE--CCEEcCCeeEEEEEecCC
Confidence 467899999999888665422 333355544321 1122222 589999999898888864
No 114
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=20.78 E-value=1.5e+02 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred cCCEEEEEEe-CCCCccc-HHHHHHHHHHHHH
Q 031768 50 EPGLVSCTFK-DRNGNLA-NGAIANLVDEVGG 79 (153)
Q Consensus 50 ~~g~v~~~~~-N~~G~lH-GG~iatl~D~a~g 79 (153)
+.|.++.||+ +|.|.+| |.+-++++....+
T Consensus 90 ~~~~vvtRFaPsPtG~LHiGharaalln~~~A 121 (560)
T TIGR00463 90 KMGEVVMRFAPNPSGPLHIGHARAAILNQYFA 121 (560)
T ss_pred cCCeeEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4578999999 9999999 6666667665544
Done!