BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031770
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3IZI5|RLMH_RHOS4 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=rlmH PE=3 SV=1
Length = 155
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 17 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIG--------FSRRNTVST-EIDKSLADQRE- 66
G+ P LLE R G++ + L + + R T+S+ E LA R+
Sbjct: 35 GLPPVQLLEFEDRKGGGMEAEADLIAKAVAPGAALVVLDERGRTLSSPEFADHLAHWRDS 94
Query: 67 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 112
R +AL G +GL PR + L +F WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLAMSFGRMVWPHMLVRVMLAEQLY 141
>sp|A3PMR2|RLMH_RHOS1 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmH PE=3
SV=1
Length = 155
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 17 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIG--------FSRRNTVST-EIDKSLADQRE- 66
G+ P LLE R G++ + L + + R T+S+ E LA R+
Sbjct: 35 GLPPVQLLELEDRKGGGMEAEADLIAKAVAPGAALVILDERGRTLSSPEFADHLAHWRDS 94
Query: 67 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 112
R +AL G +GL PR + L + WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLAMSLGRMVWPHMLVRVMLAEQLY 141
>sp|A4WNV2|RLMH_RHOS5 Ribosomal RNA large subunit methyltransferase H OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rlmH PE=3
SV=1
Length = 155
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 17 GMTPTSLLEDSSRTDSGLDDKTKLKEEDIG--------FSRRNTVST-EIDKSLADQRE- 66
G+ LLE R G++ + L + R T+S+ E + LA R+
Sbjct: 35 GLPAVQLLEVEDRKGGGMEAEADLLARAMAPGAVLAILDERGRTLSSPEFAEQLARWRDA 94
Query: 67 -RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALY 112
R +AL G +GL PR + L +F WP +LV V LY
Sbjct: 95 GRDVALAIGGADGLAPRLRDRADLALSFGRMVWPHMLVRVMLAEQLY 141
>sp|A1WIG8|SYA_VEREI Alanine--tRNA ligase OS=Verminephrobacter eiseniae (strain EF01-2)
GN=alaS PE=3 SV=1
Length = 872
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 31 DSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGLVPRAKLLLTLG 90
D+ LD KL D+ F +T +D S RER +A++ G + R K
Sbjct: 378 DAALDGGAKLLPGDVAFKLHDTYGFPLDLSADMCRERGVAVDEAGFHLAMERQKTQARAA 437
Query: 91 GTF 93
G F
Sbjct: 438 GKF 440
>sp|Q05202|FCUA_YEREN Ferrichrome receptor FcuA OS=Yersinia enterocolitica GN=fcuA PE=1
SV=1
Length = 758
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 12 ELKRRGMTPTSLLE----DSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRER 67
E KR G TP + + +S+ LD + ++D R N + E + ++ DQ+ER
Sbjct: 214 EPKRAGDTPLTRVTVDYGSASQVGGALDVGRRYGDDDQFGVRVNVLHREGESAIHDQKER 273
Query: 68 SMALNSEGLEGLVPRAKLLLTLG 90
+ A+ S GL+ RA+ L +G
Sbjct: 274 TTAV-STGLDYRGDRARTSLDVG 295
>sp|A4IGI7|CTNA2_XENTR Catenin alpha-2 OS=Xenopus tropicalis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 643 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 683
>sp|P30997|CTNA2_CHICK Catenin alpha-2 OS=Gallus gallus GN=CTNNA2 PE=1 SV=1
Length = 906
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 632 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 672
>sp|Q5R416|CTNA2_PONAB Catenin alpha-2 OS=Pongo abelii GN=CTNNA2 PE=2 SV=3
Length = 905
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 631 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 671
>sp|Q61301|CTNA2_MOUSE Catenin alpha-2 OS=Mus musculus GN=Ctnna2 PE=1 SV=3
Length = 953
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 631 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 671
>sp|P26232|CTNA2_HUMAN Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5
Length = 953
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 631 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 671
>sp|P26404|RFBM_SALTY Mannose-1-phosphate guanylyltransferase RfbM OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rfbM PE=1 SV=1
Length = 479
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 4 PPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNT 52
PP ++ L+ GMTP L+E S T G DD +L E+ GFS+ T
Sbjct: 430 PPNTI--HALENPGMTPLKLIEIQSGTYLGEDDIIRL-EQRSGFSKEWT 475
>sp|Q6GLP0|CTNA2_XENLA Catenin alpha-2 OS=Xenopus laevis GN=ctnna2 PE=2 SV=1
Length = 966
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 29 RTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSM 69
RT L+D + ++ED R +V TE D+ +A Q R++
Sbjct: 643 RTPEELEDDSDFEQEDYDVRSRTSVQTEDDQLIAGQSARAI 683
>sp|B0Y2U0|SLX1_ASPFC Structure-specific endonuclease subunit slx1 OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=slx1 PE=3 SV=1
Length = 423
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 8 LFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRER 67
L MKEL R LLE R +D K ++ S R TVS ++D E
Sbjct: 316 LMMKELSFRSRAKQELLEILKRK-RRVDRKQGAVTGEVESSSRRTVSVDLDDRFGQHAED 374
Query: 68 SMALNSEGLEGLV 80
L+ + EGL
Sbjct: 375 EFLLDEDWWEGLA 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,911,748
Number of Sequences: 539616
Number of extensions: 2199004
Number of successful extensions: 6106
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6088
Number of HSP's gapped (non-prelim): 33
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)