Query 031770
Match_columns 153
No_of_seqs 27 out of 29
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14472 F0F1 ATP synthase sub 77.6 2 4.4E-05 33.4 2.5 33 85-117 6-42 (175)
2 PF09188 DUF1951: Domain of un 67.0 4.1 8.8E-05 32.8 2.0 61 58-127 54-117 (137)
3 TIGR00869 sec62 protein transl 59.0 11 0.00024 32.2 3.3 33 87-119 150-183 (232)
4 PF06024 DUF912: Nucleopolyhed 58.0 8.8 0.00019 28.2 2.2 42 89-134 60-101 (101)
5 PF00430 ATP-synt_B: ATP synth 57.2 8.7 0.00019 27.5 2.0 21 97-117 3-23 (132)
6 PRK13453 F0F1 ATP synthase sub 55.9 11 0.00024 29.4 2.6 25 93-117 18-42 (173)
7 PF09451 ATG27: Autophagy-rela 54.2 11 0.00024 31.5 2.5 22 103-124 208-229 (268)
8 PRK07352 F0F1 ATP synthase sub 51.5 20 0.00042 27.9 3.3 21 97-117 23-43 (174)
9 PF04799 Fzo_mitofusin: fzo-li 48.9 5.7 0.00012 32.7 0.0 40 75-114 21-62 (171)
10 PRK09173 F0F1 ATP synthase sub 42.7 20 0.00044 27.3 2.2 18 96-113 4-21 (159)
11 PRK14473 F0F1 ATP synthase sub 42.4 25 0.00053 27.0 2.6 25 93-117 8-32 (164)
12 COG3966 DltD Protein involved 41.1 18 0.0004 33.6 2.0 26 95-123 5-30 (415)
13 PRK13454 F0F1 ATP synthase sub 39.7 28 0.0006 27.6 2.6 23 95-117 33-55 (181)
14 PRK13460 F0F1 ATP synthase sub 37.0 27 0.00059 27.1 2.1 22 96-117 19-40 (173)
15 PRK13460 F0F1 ATP synthase sub 34.9 37 0.0008 26.4 2.6 27 90-116 7-34 (173)
16 PF06210 DUF1003: Protein of u 34.8 35 0.00076 25.8 2.3 35 96-134 2-36 (108)
17 PF14162 YozD: YozD-like prote 34.4 29 0.00063 24.4 1.7 16 7-22 15-30 (57)
18 COG2886 Uncharacterized small 33.9 27 0.00059 26.0 1.6 16 7-22 56-71 (88)
19 KOG4452 Predicted membrane pro 33.4 38 0.00083 25.1 2.3 25 85-112 54-78 (79)
20 PF06692 MNSV_P7B: Melon necro 32.6 51 0.0011 23.5 2.7 34 100-134 18-53 (61)
21 CHL00118 atpG ATP synthase CF0 31.4 53 0.0011 25.2 2.9 20 98-117 27-46 (156)
22 PRK06569 F0F1 ATP synthase sub 31.2 50 0.0011 26.6 2.8 19 97-115 9-27 (155)
23 PF13150 DUF3989: Protein of u 30.8 60 0.0013 23.7 2.9 21 76-96 19-39 (85)
24 PRK13455 F0F1 ATP synthase sub 30.7 35 0.00075 26.8 1.8 19 98-116 31-49 (184)
25 COG4736 CcoQ Cbb3-type cytochr 30.6 68 0.0015 22.4 3.0 25 94-118 9-33 (60)
26 COG3462 Predicted membrane pro 30.6 47 0.001 26.3 2.5 30 97-126 52-81 (117)
27 KOG2927 Membrane component of 30.4 47 0.001 30.6 2.8 20 97-116 232-251 (372)
28 PF09753 Use1: Membrane fusion 29.7 73 0.0016 26.2 3.6 46 67-114 202-247 (251)
29 PRK08476 F0F1 ATP synthase sub 29.7 55 0.0012 25.0 2.7 23 95-117 9-31 (141)
30 PRK14471 F0F1 ATP synthase sub 29.0 55 0.0012 25.0 2.6 23 95-117 10-32 (164)
31 PRK13461 F0F1 ATP synthase sub 27.7 60 0.0013 24.7 2.6 22 96-117 8-29 (159)
32 TIGR02454 CbiQ_TIGR cobalt ABC 27.0 1.1E+02 0.0024 23.3 4.0 15 81-95 3-17 (198)
33 TIGR03147 cyt_nit_nrfF cytochr 27.0 74 0.0016 25.0 3.0 22 89-110 98-119 (126)
34 PRK07021 fliL flagellar basal 26.6 96 0.0021 24.1 3.6 15 103-117 28-42 (162)
35 PRK06568 F0F1 ATP synthase sub 26.3 56 0.0012 26.1 2.3 22 96-117 7-28 (154)
36 PF12955 DUF3844: Domain of un 26.1 79 0.0017 24.2 3.0 27 90-116 65-91 (103)
37 PF02416 MttA_Hcf106: mttA/Hcf 26.0 67 0.0014 21.3 2.3 20 95-118 1-20 (53)
38 PF14257 DUF4349: Domain of un 25.8 83 0.0018 25.8 3.3 23 75-97 210-232 (262)
39 PF07219 HemY_N: HemY protein 25.3 74 0.0016 23.0 2.6 19 97-115 16-34 (108)
40 PF09777 OSTMP1: Osteopetrosis 25.3 65 0.0014 27.1 2.6 13 114-126 206-218 (237)
41 TIGR02976 phageshock_pspB phag 25.0 84 0.0018 22.6 2.8 21 93-114 3-23 (75)
42 PRK14475 F0F1 ATP synthase sub 24.8 58 0.0013 25.3 2.1 19 97-115 12-30 (167)
43 PRK09174 F0F1 ATP synthase sub 24.6 67 0.0014 26.3 2.5 14 100-113 55-68 (204)
44 TIGR00998 8a0101 efflux pump m 24.6 87 0.0019 25.7 3.2 27 94-120 4-31 (334)
45 KOG2365 Uncharacterized membra 24.1 62 0.0013 32.3 2.5 32 86-117 740-776 (808)
46 COG1972 NupC Nucleoside permea 24.1 64 0.0014 30.1 2.5 25 89-113 86-110 (404)
47 PRK08476 F0F1 ATP synthase sub 24.1 78 0.0017 24.1 2.6 19 98-116 7-25 (141)
48 PF07790 DUF1628: Protein of u 23.7 1.2E+02 0.0027 20.5 3.3 23 96-118 8-30 (80)
49 PRK14655 mraY phospho-N-acetyl 23.6 1.2E+02 0.0027 26.4 4.1 34 61-94 88-121 (304)
50 MTH00119 CYTB cytochrome b; Pr 23.4 1.3E+02 0.0028 26.9 4.2 24 114-137 245-272 (380)
51 PLN03156 GDSL esterase/lipase; 23.1 62 0.0013 28.1 2.1 33 93-125 5-43 (351)
52 PF05478 Prominin: Prominin; 23.0 80 0.0017 30.6 3.1 20 91-110 467-486 (806)
53 PRK03625 tatE twin arginine tr 23.0 75 0.0016 22.5 2.2 21 94-118 3-23 (67)
54 PRK05886 yajC preprotein trans 22.6 87 0.0019 24.0 2.6 17 95-115 5-21 (109)
55 COG1862 YajC Preprotein transl 22.6 75 0.0016 23.9 2.2 17 92-108 7-23 (97)
56 PF06422 PDR_CDR: CDR ABC tran 22.0 86 0.0019 22.9 2.4 16 100-115 54-69 (103)
57 PF02361 CbiQ: Cobalt transpor 22.0 1.6E+02 0.0034 22.3 3.9 21 77-97 6-26 (224)
58 PF03918 CcmH: Cytochrome C bi 21.7 31 0.00066 27.2 0.0 27 88-114 97-123 (148)
59 PF02468 PsbN: Photosystem II 21.5 84 0.0018 20.9 2.0 23 94-117 7-29 (43)
60 PF10031 DUF2273: Small integr 21.4 1.2E+02 0.0026 20.2 2.8 20 93-112 25-44 (51)
61 PRK04598 tatA twin arginine tr 21.4 87 0.0019 23.1 2.3 20 95-118 4-23 (81)
62 PHA03030 hypothetical protein; 21.2 84 0.0018 24.9 2.3 17 100-116 6-22 (122)
63 PRK05585 yajC preprotein trans 21.2 86 0.0019 23.5 2.3 15 93-107 17-31 (106)
64 PRK14859 tatA twin arginine tr 21.1 86 0.0019 21.9 2.1 21 94-118 3-23 (63)
65 PF04304 DUF454: Protein of un 21.1 2.2E+02 0.0047 18.9 4.1 15 78-92 23-37 (71)
66 PF10805 DUF2730: Protein of u 20.6 81 0.0018 23.3 2.1 28 93-120 4-32 (106)
67 PF13334 DUF4094: Domain of un 20.6 98 0.0021 22.9 2.5 16 98-113 4-19 (95)
68 COG5416 Uncharacterized integr 20.4 76 0.0017 24.4 1.9 15 96-110 57-71 (98)
69 PRK08475 F0F1 ATP synthase sub 20.3 84 0.0018 24.6 2.2 22 96-117 25-46 (167)
70 PF03013 Pyr_excise: Pyrimidin 20.2 64 0.0014 25.2 1.5 18 8-25 67-84 (130)
71 PRK14857 tatA twin arginine tr 20.0 89 0.0019 23.3 2.1 22 93-118 4-25 (90)
No 1
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=77.59 E-value=2 Score=33.41 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=18.0
Q ss_pred HHHhhcchhhhh----hhHHHHHHHHHHHHHHHhhcC
Q 031770 85 LLLTLGGTFFLG----FWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 85 ~Ll~lG~tfFl~----F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
+.|.-||.|.+- ||-+|...+++|+..||+|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kp 42 (175)
T PRK14472 6 IILLSGGLLSPNPGLIFWTAVTFVIVLLILKKIAWGP 42 (175)
T ss_pred hhhhcCCccCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345566654443 455555555555555666655
No 2
>PF09188 DUF1951: Domain of unknown function (DUF1951); InterPro: IPR015271 Members of this family of Mycoplasma hypothetical proteins adopt a multi-helical structure that contains a buried central helix. Their function has not, as yet, been determined. ; PDB: 1TM9_A.
Probab=66.98 E-value=4.1 Score=32.77 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccchHHHHH-HhHhhhccCccCcchhHHHHHhhc--chhhhhhhHHHHHHHHHHHHHHHhhcCccccCCCCCC
Q 031770 58 DKSLADQRE-RSMALNSEGLEGLVPRAKLLLTLG--GTFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSP 127 (153)
Q Consensus 58 ~r~~~~Qre-RSmaLNSEGLEGLipRAk~Ll~lG--~tfFl~F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~~ 127 (153)
-.++.+|-+ |-.+.|+ .+-|.+.| |-..++|.--=--+...||..||+|-.+|.||.++.+
T Consensus 54 ~~nE~~q~~~~k~~inn---------~~T~~tv~~~~q~v~S~Fstn~e~~~~FC~~YfLy~~~F~~D~nkkq 117 (137)
T PF09188_consen 54 IKNEPTQHEIRKFAINN---------IKTLSTVGEEGQYVASLFSTNKEIAIIFCLYYFLYHFSFLFDDNKKQ 117 (137)
T ss_dssp S-SHHHHHHHHHHHHHH---------HHHHTT--SS---STHHHHS-HHHHHHHHHHHHHHHTT-S-----SS
T ss_pred HhcCchHHHHHHHHHHH---------HHHHHHhhhhHHHHHHHHhcCchHHHHHHHHHHHHHhhccccchHHH
Confidence 345667765 6677665 46667777 2334444322222334699999999999999998753
No 3
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=58.97 E-value=11 Score=32.25 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=23.3
Q ss_pred Hhhcchhhhh-hhHHHHHHHHHHHHHHHhhcCcc
Q 031770 87 LTLGGTFFLG-FWPLILVTVGFFSALYFYFGPTF 119 (153)
Q Consensus 87 l~lG~tfFl~-F~Pli~~~~~~F~a~Y~~fG~~F 119 (153)
++.|+..|+| |.=++++=.++|+++|+..|..|
T Consensus 150 lS~~~lgll~~~~~laivRlilF~i~~~~~g~~f 183 (232)
T TIGR00869 150 LSLGALGIIGGFFAVAILRLILFVLTLIVVKPGI 183 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 5566666665 44555666789999999988665
No 4
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=58.00 E-value=8.8 Score=28.22 Aligned_cols=42 Identities=12% Similarity=0.350 Sum_probs=27.0
Q ss_pred hcchhhhhhhHHHHHHHHHHHHHHHhhcCccccCCCCCCCCCCCCC
Q 031770 89 LGGTFFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSPMSPAQYG 134 (153)
Q Consensus 89 lG~tfFl~F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~~~~pp~yi 134 (153)
.+...+++...+++++|++++..||+. +-+..+.....|.||
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVI----LRer~~~~~~~p~~~ 101 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVI----LRERQKSIRNQPSFM 101 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEE----EecccccccCCCCcC
Confidence 355667777778888887777777653 444555555566664
No 5
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=57.22 E-value=8.7 Score=27.50 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q 031770 97 FWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
||-+|..++++|+.-||+|+|
T Consensus 3 ~~~~i~Flil~~~l~~~~~~p 23 (132)
T PF00430_consen 3 FWQLINFLILFFLLNKFLYKP 23 (132)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788888888776
No 6
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=55.88 E-value=11 Score=29.44 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcC
Q 031770 93 FFLGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
.+..||-+|..++++|+.-||+|+|
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~p 42 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGP 42 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666777765
No 7
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=54.24 E-value=11 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhcCccccCCC
Q 031770 103 VTVGFFSALYFYFGPTFVHDAS 124 (153)
Q Consensus 103 ~~~~~F~a~Y~~fG~~FiH~g~ 124 (153)
+++++|.++||.||+-+=|..-
T Consensus 208 i~~~l~~~~Y~i~g~~~n~~~~ 229 (268)
T PF09451_consen 208 IILFLFLAAYLIFGSWYNYNRY 229 (268)
T ss_pred HHHHHHHHHHhhhhhheeeccC
Confidence 3445556999999998876653
No 8
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.48 E-value=20 Score=27.91 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q 031770 97 FWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
+|-+|-.++++|...||++.|
T Consensus 23 ~~~iinflIl~~lL~~fl~kp 43 (174)
T PRK07352 23 ETNLINLAIVIGLLYYFGRGF 43 (174)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 355555555555555555554
No 9
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=48.93 E-value=5.7 Score=32.72 Aligned_cols=40 Identities=30% Similarity=0.656 Sum_probs=0.0
Q ss_pred CccCcchhHHHH-Hhhcchhh-hhhhHHHHHHHHHHHHHHHh
Q 031770 75 GLEGLVPRAKLL-LTLGGTFF-LGFWPLILVTVGFFSALYFY 114 (153)
Q Consensus 75 GLEGLipRAk~L-l~lG~tfF-l~F~Pli~~~~~~F~a~Y~~ 114 (153)
|+.-+..|...= +=+||.++ -.=|++|+++.++|.++|+|
T Consensus 21 ~~as~~S~~s~g~liv~gvv~rtvGWrvIa~~~~~Yg~lYlY 62 (171)
T PF04799_consen 21 GLASVTSRGSMGVLIVGGVVWRTVGWRVIAVSGSLYGGLYLY 62 (171)
T ss_dssp ------------------------------------------
T ss_pred HHHHHhcCCchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444445554421 22233333 23499999999999999998
No 10
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=42.70 E-value=20 Score=27.26 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 031770 96 GFWPLILVTVGFFSALYF 113 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~ 113 (153)
.||-+|..++.+|+..||
T Consensus 4 ~~w~~i~f~i~l~~l~~~ 21 (159)
T PRK09173 4 TFWAFVGLVLFLALVVYL 21 (159)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 467777666666666666
No 11
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=42.40 E-value=25 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcC
Q 031770 93 FFLGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
.++.+|=+|..++++|..-||+|+|
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~kp 32 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLYRP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777788776
No 12
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=41.07 E-value=18 Score=33.60 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCccccCC
Q 031770 95 LGFWPLILVTVGFFSALYFYFGPTFVHDA 123 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~~FiH~g 123 (153)
+.|+|||++.++|+.+++ +|+=+|.|
T Consensus 5 ~~fGPlliA~alf~~~if---~Pss~~~~ 30 (415)
T COG3966 5 MIFGPLLIAFALFILLIF---LPSSWFTG 30 (415)
T ss_pred cchhHHHHHHHHHHHHHH---hhhHHhhc
Confidence 579999999988877665 45444443
No 13
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.75 E-value=28 Score=27.64 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcC
Q 031770 95 LGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
..||-+|..++++|..-+|+|.|
T Consensus 33 q~~~~lI~F~iL~~ll~k~l~~P 55 (181)
T PRK13454 33 QIFWLLVTLVAIYFVLTRVALPR 55 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676666666666666776654
No 14
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.95 E-value=27 Score=27.14 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC
Q 031770 96 GFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
.||-+|...+++|..-||+|+|
T Consensus 19 ~~~~~i~Flil~~iL~~~~~kp 40 (173)
T PRK13460 19 VVWTLVTFLVVVLVLKKFAWDV 40 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4454555555555555666654
No 15
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=34.94 E-value=37 Score=26.41 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=17.2
Q ss_pred cchhhhhhhH-HHHHHHHHHHHHHHhhc
Q 031770 90 GGTFFLGFWP-LILVTVGFFSALYFYFG 116 (153)
Q Consensus 90 G~tfFl~F~P-li~~~~~~F~a~Y~~fG 116 (153)
||.=.|.|+| .+++.++.|+.+|+++.
T Consensus 7 ~~~~~l~~~~~~~~~~~i~Flil~~iL~ 34 (173)
T PRK13460 7 KGLSLLDVNPGLVVWTLVTFLVVVLVLK 34 (173)
T ss_pred CCCCccCCcHhHHHHHHHHHHHHHHHHH
Confidence 4433444454 77777888888887653
No 16
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.77 E-value=35 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCccccCCCCCCCCCCCCC
Q 031770 96 GFWPLILVTVGFFSALYFYFGPTFVHDASNSPMSPAQYG 134 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~~~~pp~yi 134 (153)
|-|+||++.+++| ++|+....-.+.. .+..|+|||
T Consensus 2 GS~~Fi~~~~~~~-~~Wi~~N~~~~~~---~~fDpyPFi 36 (108)
T PF06210_consen 2 GSWTFIIIFTVFL-AVWILLNILAPPR---PAFDPYPFI 36 (108)
T ss_pred CcHHHHHHHHHHH-HHHHHHHhhcccc---CCCCCccHH
Confidence 4588887776654 4566555444333 234666654
No 17
>PF14162 YozD: YozD-like protein
Probab=34.43 E-value=29 Score=24.41 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.3
Q ss_pred hhHHHHHHHcCCCCCC
Q 031770 7 SLFMKELKRRGMTPTS 22 (153)
Q Consensus 7 SlF~kELkRRgmap~s 22 (153)
.-|-+||.|||.-|+-
T Consensus 15 efFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 15 EFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHccCCCcH
Confidence 3589999999998863
No 18
>COG2886 Uncharacterized small protein [Function unknown]
Probab=33.89 E-value=27 Score=26.00 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.3
Q ss_pred hhHHHHHHHcCCCCCC
Q 031770 7 SLFMKELKRRGMTPTS 22 (153)
Q Consensus 7 SlF~kELkRRgmap~s 22 (153)
-.|++||++||..+-+
T Consensus 56 ~ef~~eL~~R~i~l~~ 71 (88)
T COG2886 56 NEFEEELRKRGIPLYD 71 (88)
T ss_pred HHHHHHHHHhCCCccc
Confidence 4699999999997654
No 19
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=33.41 E-value=38 Score=25.05 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=15.3
Q ss_pred HHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 031770 85 LLLTLGGTFFLGFWPLILVTVGFFSALY 112 (153)
Q Consensus 85 ~Ll~lG~tfFl~F~Pli~~~~~~F~a~Y 112 (153)
+|+++-.+.|+||+-+ +..+.+++|
T Consensus 54 LlIsl~aSvFlGFG~v---FLLLwVGIY 78 (79)
T KOG4452|consen 54 LLISLTASVFLGFGSV---FLLLWVGIY 78 (79)
T ss_pred HHHHHHHHHHHhhhHH---HHHHHHhhc
Confidence 4567777778887743 344455554
No 20
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=32.64 E-value=51 Score=23.48 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHh--hcCccccCCCCCCCCCCCCC
Q 031770 100 LILVTVGFFSALYFY--FGPTFVHDASNSPMSPAQYG 134 (153)
Q Consensus 100 li~~~~~~F~a~Y~~--fG~~FiH~g~~~~~~pp~yi 134 (153)
||++++.+|..+|++ =|++++|.-++..+ .-+||
T Consensus 18 Liliis~~f~lI~~l~qq~~~y~HH~d~Ss~-KTQyv 53 (61)
T PF06692_consen 18 LILIISFVFFLITSLGQQGNTYVHHFDNSSV-KTQYV 53 (61)
T ss_pred HHHHHHHHHHHHhhhccCCCeeEEeecCccc-eeEEE
Confidence 345555566655554 36789998776532 33444
No 21
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=31.42 E-value=53 Score=25.21 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHhhcC
Q 031770 98 WPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 98 ~Pli~~~~~~F~a~Y~~fG~ 117 (153)
|=+|...+.+|..-+|+|+|
T Consensus 27 ~~~inFliL~~lL~k~l~~P 46 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYKP 46 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666665
No 22
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.18 E-value=50 Score=26.63 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 031770 97 FWPLILVTVGFFSALYFYF 115 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~f 115 (153)
|+..|+.+++.|+++|+++
T Consensus 9 ~~sqifw~iI~FlILy~ll 27 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFV 27 (155)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 23
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=30.82 E-value=60 Score=23.69 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=15.0
Q ss_pred ccCcchhHHHHHhhcchhhhh
Q 031770 76 LEGLVPRAKLLLTLGGTFFLG 96 (153)
Q Consensus 76 LEGLipRAk~Ll~lG~tfFl~ 96 (153)
+++|.|+.+.-+-+...++++
T Consensus 19 c~~Lsp~~R~~vvl~ml~~fa 39 (85)
T PF13150_consen 19 CGRLSPKQRLRVVLVMLVLFA 39 (85)
T ss_pred HhcCCHHHHHHHHHHHHHHHH
Confidence 689999999887765444333
No 24
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=30.68 E-value=35 Score=26.75 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 031770 98 WPLILVTVGFFSALYFYFG 116 (153)
Q Consensus 98 ~Pli~~~~~~F~a~Y~~fG 116 (153)
|-.|..++++|...||+++
T Consensus 31 ~~~inflil~~iL~~f~~~ 49 (184)
T PRK13455 31 VVTLAFLLFIGILVYFKVP 49 (184)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5555555555555555444
No 25
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.61 E-value=68 Score=22.43 Aligned_cols=25 Identities=32% Similarity=0.695 Sum_probs=19.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 94 FLGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
|.-+|=+|+.+..|.+++|+.|.+.
T Consensus 9 ~a~a~~t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 9 FADAWGTIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445667888888889999999875
No 26
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.59 E-value=47 Score=26.30 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCccccCCCCC
Q 031770 97 FWPLILVTVGFFSALYFYFGPTFVHDASNS 126 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~ 126 (153)
+-|+..++|.+|..++.|+=--=+|+|+++
T Consensus 52 ImpI~~~vvli~lvvfm~~~~g~~r~~~~~ 81 (117)
T COG3462 52 IMPIFWAVVLIFLVVFMFYILGAVRRGSDD 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 558888888877777777655557778764
No 27
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.36 E-value=47 Score=30.64 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 031770 97 FWPLILVTVGFFSALYFYFG 116 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~fG 116 (153)
|.-|.+|=..+|+++|++.|
T Consensus 232 IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 232 ILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44455555678999999888
No 28
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.72 E-value=73 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=29.6
Q ss_pred HhHhhhccCccCcchhHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHh
Q 031770 67 RSMALNSEGLEGLVPRAKLLLTLGGTFFLGFWPLILVTVGFFSALYFY 114 (153)
Q Consensus 67 RSmaLNSEGLEGLipRAk~Ll~lG~tfFl~F~Pli~~~~~~F~a~Y~~ 114 (153)
..+.=|..+|..-=-|.+...+.++. ...|=+|++++++|++.|++
T Consensus 202 ~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 202 EGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777788888876666 33344556666667766665
No 29
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=29.68 E-value=55 Score=24.95 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcC
Q 031770 95 LGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
..+|=+|...+++|+.-.|+|+|
T Consensus 9 ~~~~qli~Flil~~~l~kfl~kP 31 (141)
T PRK08476 9 LMLATFVVFLLLIVILNSWLYKP 31 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556555666665
No 30
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.97 E-value=55 Score=25.02 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcC
Q 031770 95 LGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
..||=+|..++++|..-+|+|+|
T Consensus 10 ~~~~~~i~Flil~~ll~~~l~~p 32 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFAWKP 32 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555666666666666666665
No 31
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.65 E-value=60 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC
Q 031770 96 GFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
.||=+|..++++|..-||+|+|
T Consensus 8 ~~~~~inF~il~~iL~~f~~kp 29 (159)
T PRK13461 8 IIATIINFIILLLILKHFFFDK 29 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4555565566666666777765
No 32
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=27.03 E-value=1.1e+02 Score=23.32 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=9.1
Q ss_pred hhHHHHHhhcchhhh
Q 031770 81 PRAKLLLTLGGTFFL 95 (153)
Q Consensus 81 pRAk~Ll~lG~tfFl 95 (153)
||+|++..++.++..
T Consensus 3 p~~Kl~~~~~~~i~~ 17 (198)
T TIGR02454 3 PRVKLISALALLVLA 17 (198)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677766666555444
No 33
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=27.00 E-value=74 Score=25.02 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.8
Q ss_pred hcchhhhhhhHHHHHHHHHHHH
Q 031770 89 LGGTFFLGFWPLILVTVGFFSA 110 (153)
Q Consensus 89 lG~tfFl~F~Pli~~~~~~F~a 110 (153)
-|.|.+|-++|++++.+.++..
T Consensus 98 ~~~t~~LW~~P~lll~~G~~~~ 119 (126)
T TIGR03147 98 KWQTLLLWLLPVLLLLLAFVLL 119 (126)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 4789999999999987766543
No 34
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.59 E-value=96 Score=24.12 Aligned_cols=15 Identities=0% Similarity=0.106 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhcC
Q 031770 103 VTVGFFSALYFYFGP 117 (153)
Q Consensus 103 ~~~~~F~a~Y~~fG~ 117 (153)
+..+.+.+.|||++.
T Consensus 28 l~~~g~gg~~~~~~~ 42 (162)
T PRK07021 28 LAAAAGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334457788888876
No 35
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=26.27 E-value=56 Score=26.06 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC
Q 031770 96 GFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
.||-+|..++++|..-.|.|||
T Consensus 7 ~fwq~I~FlIll~ll~kfawkP 28 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKA 28 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4777777777777766666665
No 36
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=26.08 E-value=79 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=21.8
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhc
Q 031770 90 GGTFFLGFWPLILVTVGFFSALYFYFG 116 (153)
Q Consensus 90 G~tfFl~F~Pli~~~~~~F~a~Y~~fG 116 (153)
-.-|+|.+|=-|++++++-.++.++|.
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I~lL~s 91 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAIGLLFS 91 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888888888874
No 37
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=26.01 E-value=67 Score=21.30 Aligned_cols=20 Identities=35% Similarity=0.756 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 95 LGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
+|+|=++++.++.+ ++|||+
T Consensus 1 ig~~El~iI~vval----llfGp~ 20 (53)
T PF02416_consen 1 IGFPELLIILVVAL----LLFGPK 20 (53)
T ss_dssp S-HHHHHHHHHHHH----HHS-TT
T ss_pred CCHHHHHHHHHHHH----HHhCch
Confidence 35666666555443 478875
No 38
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.81 E-value=83 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=16.6
Q ss_pred CccCcchhHHHHHhhcchhhhhh
Q 031770 75 GLEGLVPRAKLLLTLGGTFFLGF 97 (153)
Q Consensus 75 GLEGLipRAk~Ll~lG~tfFl~F 97 (153)
.-.++..|.+.-++-|...|..|
T Consensus 210 ~~~~~~~~~~~al~~~~~~~~~~ 232 (262)
T PF14257_consen 210 ESPSFGSRFRDALKNGWNALVSF 232 (262)
T ss_pred CCCCcchHHHHHHHHHHHHHHHH
Confidence 55688888888787777666655
No 39
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.33 E-value=74 Score=23.01 Aligned_cols=19 Identities=21% Similarity=0.712 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 031770 97 FWPLILVTVGFFSALYFYF 115 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~f 115 (153)
+|=++++++++|+++|+++
T Consensus 16 l~~~~~~l~~~~~~l~ll~ 34 (108)
T PF07219_consen 16 LWVALILLLLLFVVLYLLL 34 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666543
No 40
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=25.26 E-value=65 Score=27.10 Aligned_cols=13 Identities=8% Similarity=0.560 Sum_probs=9.1
Q ss_pred hhcCccccCCCCC
Q 031770 114 YFGPTFVHDASNS 126 (153)
Q Consensus 114 ~fG~~FiH~g~~~ 126 (153)
+..++|||+..+.
T Consensus 206 FY~~s~~~~~~~~ 218 (237)
T PF09777_consen 206 FYLSSYLHSERKK 218 (237)
T ss_pred HHHhheeeecccc
Confidence 3346789998765
No 41
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.98 E-value=84 Score=22.59 Aligned_cols=21 Identities=33% Similarity=0.584 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q 031770 93 FFLGFWPLILVTVGFFSALYFY 114 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~~ 114 (153)
+|+-+.|+|+. +++-+.++++
T Consensus 3 ~~fl~~Pliif-~ifVap~wl~ 23 (75)
T TIGR02976 3 IFFLAIPLIIF-VIFVAPLWLI 23 (75)
T ss_pred hHHHHHHHHHH-HHHHHHHHHH
Confidence 45567887765 4444555554
No 42
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.80 E-value=58 Score=25.27 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 031770 97 FWPLILVTVGFFSALYFYF 115 (153)
Q Consensus 97 F~Pli~~~~~~F~a~Y~~f 115 (153)
||-+|..++++|..+|+.|
T Consensus 12 ~w~~i~f~il~~iL~~~k~ 30 (167)
T PRK14475 12 FWVGAGLLIFFGILIALKV 30 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6766555555555544444
No 43
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=24.62 E-value=67 Score=26.33 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 031770 100 LILVTVGFFSALYF 113 (153)
Q Consensus 100 li~~~~~~F~a~Y~ 113 (153)
-|+..++.|.++|+
T Consensus 55 ~l~w~~I~FliL~~ 68 (204)
T PRK09174 55 QLLWLAITFGLFYL 68 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444333
No 44
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=24.62 E-value=87 Score=25.68 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHH-HHHHhhcCccc
Q 031770 94 FLGFWPLILVTVGFFS-ALYFYFGPTFV 120 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~-a~Y~~fG~~Fi 120 (153)
|+.+|+++++++++++ ++|++.+.+++
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 31 (334)
T TIGR00998 4 FLLLLVVLLIVVAGAYAIYWFLVLRDYE 31 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 4445555555555555 44444555554
No 45
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.14 E-value=62 Score=32.34 Aligned_cols=32 Identities=41% Similarity=0.780 Sum_probs=26.8
Q ss_pred HHhhcchhhhh-----hhHHHHHHHHHHHHHHHhhcC
Q 031770 86 LLTLGGTFFLG-----FWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 86 Ll~lG~tfFl~-----F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
|--+||.++|| +||+|+-++.+|+-+|+..|-
T Consensus 740 LAIiGG~y~lgl~gaiiGpiilc~~~v~snIyl~~~~ 776 (808)
T KOG2365|consen 740 LAIIGGVYLLGLVGAIIGPIILCFVMVFSNIYLLQGA 776 (808)
T ss_pred ehhhccchhhhhhhhhhhhhHHHHHHHHHHHHHHhcc
Confidence 44578887776 799999999999999998764
No 46
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=24.09 E-value=64 Score=30.08 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.8
Q ss_pred hcchhhhhhhHHHHHHHHHHHHHHH
Q 031770 89 LGGTFFLGFWPLILVTVGFFSALYF 113 (153)
Q Consensus 89 lG~tfFl~F~Pli~~~~~~F~a~Y~ 113 (153)
-|..||+--+|-|+.++++++.+|-
T Consensus 86 ~gf~Fa~~VL~~IiF~saLi~iLyy 110 (404)
T COG1972 86 AGFIFAFRVLPPIIFISALISILYY 110 (404)
T ss_pred CceeeeHHhhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999984
No 47
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.05 E-value=78 Score=24.12 Aligned_cols=19 Identities=26% Similarity=0.189 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 031770 98 WPLILVTVGFFSALYFYFG 116 (153)
Q Consensus 98 ~Pli~~~~~~F~a~Y~~fG 116 (153)
|+.+++.++.|.++|+++.
T Consensus 7 ~~~~~~qli~Flil~~~l~ 25 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILN 25 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777664
No 48
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=23.67 E-value=1.2e+02 Score=20.54 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCc
Q 031770 96 GFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
|-.=+|++++++.+.++.++...
T Consensus 8 GviLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 8 GVILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34446788888888888777554
No 49
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=23.57 E-value=1.2e+02 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=26.7
Q ss_pred hHHHHHHhHhhhccCccCcchhHHHHHhhcchhh
Q 031770 61 LADQRERSMALNSEGLEGLVPRAKLLLTLGGTFF 94 (153)
Q Consensus 61 ~~~QreRSmaLNSEGLEGLipRAk~Ll~lG~tfF 94 (153)
.||-++-+..-+++|-+||.||.|++++.-.+..
T Consensus 88 ~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~ 121 (304)
T PRK14655 88 IDDFLKIRSRMRGHGKKELLAREKFPLQFLVALV 121 (304)
T ss_pred HhhhhhhhccccccccCCCCHHHHHHHHHHHHHH
Confidence 5777776666677888899999999998866544
No 50
>MTH00119 CYTB cytochrome b; Provisional
Probab=23.36 E-value=1.3e+02 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=15.2
Q ss_pred hhcCccccCC----CCCCCCCCCCCCch
Q 031770 114 YFGPTFVHDA----SNSPMSPAQYGDPY 137 (153)
Q Consensus 114 ~fG~~FiH~g----~~~~~~pp~yidP~ 137 (153)
.|.|.++++- ...|+.+|..|.|+
T Consensus 245 ~~~P~~l~~p~n~~panp~~TP~~i~PE 272 (380)
T MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPE 272 (380)
T ss_pred HhCCCcccCccccccCCCCCCCCCCCcc
Confidence 4457777764 22456677778775
No 51
>PLN03156 GDSL esterase/lipase; Provisional
Probab=23.07 E-value=62 Score=28.10 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHHHHH------HHhhcCccccCCCC
Q 031770 93 FFLGFWPLILVTVGFFSAL------YFYFGPTFVHDASN 125 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~------Y~~fG~~FiH~g~~ 125 (153)
.||.|.=+|+.++...++. .|.||.|.+--|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~aifvFGDSl~D~GN~ 43 (351)
T PLN03156 5 LFLIFFLLLAQLLVLVAETCAKVPAIIVFGDSSVDAGNN 43 (351)
T ss_pred hhhHHHHHHHHHHHHHhcccCCCCEEEEecCcCccCCCc
Confidence 4777777888888777632 68999999999975
No 52
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.04 E-value=80 Score=30.55 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=13.2
Q ss_pred chhhhhhhHHHHHHHHHHHH
Q 031770 91 GTFFLGFWPLILVTVGFFSA 110 (153)
Q Consensus 91 ~tfFl~F~Pli~~~~~~F~a 110 (153)
+..|+.||++|+++++.|.+
T Consensus 467 ~~~Flf~~~l~l~~~~~Fl~ 486 (806)
T PF05478_consen 467 GLSFLFSWFLMLLVLFYFLV 486 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567788888777665543
No 53
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=22.95 E-value=75 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 94 FLGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
-+++|=+++|.+++ .++|||.
T Consensus 3 ~ig~~elliIlvI~----lllFGpk 23 (67)
T PRK03625 3 EISITKLLVVAALV----VLLFGTK 23 (67)
T ss_pred CCcHHHHHHHHHHH----HHHcCcc
Confidence 36777666655443 3678885
No 54
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.62 E-value=87 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.653 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhh
Q 031770 95 LGFWPLILVTVGFFSALYFYF 115 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~f 115 (153)
..|+|+|+ +|.+.||++
T Consensus 5 ~~ll~lv~----i~~i~yF~~ 21 (109)
T PRK05886 5 VLFLPFLL----IMGGFMYFA 21 (109)
T ss_pred HHHHHHHH----HHHHHHHHH
Confidence 34455554 445556554
No 55
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.61 E-value=75 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=8.1
Q ss_pred hhhhhhhHHHHHHHHHH
Q 031770 92 TFFLGFWPLILVTVGFF 108 (153)
Q Consensus 92 tfFl~F~Pli~~~~~~F 108 (153)
..+..+.||+++++.||
T Consensus 7 ~~~~~ll~~vl~~~ify 23 (97)
T COG1862 7 SGLVLLLPLVLIFAIFY 23 (97)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34444555555444443
No 56
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.02 E-value=86 Score=22.91 Aligned_cols=16 Identities=19% Similarity=0.278 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 031770 100 LILVTVGFFSALYFYF 115 (153)
Q Consensus 100 li~~~~~~F~a~Y~~f 115 (153)
+|+++.++|+++++++
T Consensus 54 Ili~f~i~f~~~~~~~ 69 (103)
T PF06422_consen 54 ILIAFWIFFIVLTLLA 69 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666666544
No 57
>PF02361 CbiQ: Cobalt transport protein; InterPro: IPR003339 Cobalt transport proteins are most often found in cobalamin (vitamin B12) biosynthesis operons. Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic conditions. Not all Salmonella and Pseudomonas cobalamin synthetic genes have apparent homologs in the other species suggesting that the cobalamin biosynthetic pathways differ between the two organisms [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process
Probab=22.00 E-value=1.6e+02 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=13.3
Q ss_pred cCcchhHHHHHhhcchhhhhh
Q 031770 77 EGLVPRAKLLLTLGGTFFLGF 97 (153)
Q Consensus 77 EGLipRAk~Ll~lG~tfFl~F 97 (153)
.-+-||+|.+..+...+.+.+
T Consensus 6 ~~l~p~~kl~~~~~~~~~~~~ 26 (224)
T PF02361_consen 6 HRLDPRTKLIFLILLSVIVFL 26 (224)
T ss_pred cccCHHHHHHHHHHHHHHHHH
Confidence 446688888877665544433
No 58
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=21.67 E-value=31 Score=27.22 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=0.4
Q ss_pred hhcchhhhhhhHHHHHHHHHHHHHHHh
Q 031770 88 TLGGTFFLGFWPLILVTVGFFSALYFY 114 (153)
Q Consensus 88 ~lG~tfFl~F~Pli~~~~~~F~a~Y~~ 114 (153)
.-|.|.+|-++|++++.++++.+.+..
T Consensus 97 ~~~~~~~lW~~P~~~l~~g~~~~~~~~ 123 (148)
T PF03918_consen 97 FKGFTWLLWLGPFLLLLLGGALLFRRL 123 (148)
T ss_dssp S--------------------------
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999888877766543
No 59
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.49 E-value=84 Score=20.90 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcC
Q 031770 94 FLGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
+..|.-.+++.+.. -++|.-|||
T Consensus 7 ~~i~i~~~lv~~Tg-y~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITG-YAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHh-hhhhheeCC
Confidence 33344444444333 578999996
No 60
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.43 E-value=1.2e+02 Score=20.23 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 031770 93 FFLGFWPLILVTVGFFSALY 112 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y 112 (153)
+.+|||.-+++++....+.|
T Consensus 25 l~~GF~~tl~i~~~~~iG~~ 44 (51)
T PF10031_consen 25 LTFGFWKTLFILLFAAIGYY 44 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788888877776666554
No 61
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=21.38 E-value=87 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.781 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 95 LGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
+|+|=||+|.++ +.++||+.
T Consensus 4 lg~~elliIlvi----vlllFG~k 23 (81)
T PRK04598 4 ISIWQLLIIAVI----VVLLFGTK 23 (81)
T ss_pred ccHHHHHHHHHH----HHHHhCcc
Confidence 566655555443 34788864
No 62
>PHA03030 hypothetical protein; Provisional
Probab=21.19 E-value=84 Score=24.92 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031770 100 LILVTVGFFSALYFYFG 116 (153)
Q Consensus 100 li~~~~~~F~a~Y~~fG 116 (153)
+|++++.+|+.+|||--
T Consensus 6 ~ili~lfifl~iffYI~ 22 (122)
T PHA03030 6 LILIFLFIFLFIFFYIR 22 (122)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 56677777777888753
No 63
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.16 E-value=86 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.9
Q ss_pred hhhhhhHHHHHHHHH
Q 031770 93 FFLGFWPLILVTVGF 107 (153)
Q Consensus 93 fFl~F~Pli~~~~~~ 107 (153)
.+..++|++++++.+
T Consensus 17 ~~~~ll~lvii~~i~ 31 (106)
T PRK05585 17 GLSSLLPLVVFFAIF 31 (106)
T ss_pred cHHHHHHHHHHHHHH
Confidence 455566665544433
No 64
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=21.09 E-value=86 Score=21.94 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 94 FLGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
-+|||=++++.+++ .++|||+
T Consensus 3 giG~~ElliIlvv~----LlvfGp~ 23 (63)
T PRK14859 3 GIGMPELIVILVIV----LIVFGAG 23 (63)
T ss_pred CccHHHHHHHHHHH----HHHhCch
Confidence 35666555544432 3678875
No 65
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=21.08 E-value=2.2e+02 Score=18.88 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=8.6
Q ss_pred CcchhHHHHHhhcch
Q 031770 78 GLVPRAKLLLTLGGT 92 (153)
Q Consensus 78 GLipRAk~Ll~lG~t 92 (153)
|+..|||....+..+
T Consensus 23 ~i~~k~K~~a~~~m~ 37 (71)
T PF04304_consen 23 GIPRKAKIRALLMMW 37 (71)
T ss_pred CcCHHHHHHHHHHHH
Confidence 566777765444333
No 66
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.64 E-value=81 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=18.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh-hcCccc
Q 031770 93 FFLGFWPLILVTVGFFSALYFY-FGPTFV 120 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~~-fG~~Fi 120 (153)
|+-..||+|..++++++++|.+ ....|+
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~a 32 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIFWLWLRRTYA 32 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667899988777766655544 655554
No 67
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.63 E-value=98 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.847 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 031770 98 WPLILVTVGFFSALYF 113 (153)
Q Consensus 98 ~Pli~~~~~~F~a~Y~ 113 (153)
|.+++.+..|++++||
T Consensus 4 w~l~Lc~~SF~~G~lf 19 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLF 19 (95)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666665
No 68
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=20.35 E-value=76 Score=24.40 Aligned_cols=15 Identities=40% Similarity=0.372 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHH
Q 031770 96 GFWPLILVTVGFFSA 110 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a 110 (153)
.=||||+++...|++
T Consensus 57 ~~~PLilvil~s~v~ 71 (98)
T COG5416 57 WELPLILVILGAAVV 71 (98)
T ss_pred hhhhHHHHHHHHHHH
Confidence 348999999888764
No 69
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.33 E-value=84 Score=24.60 Aligned_cols=22 Identities=18% Similarity=-0.062 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC
Q 031770 96 GFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 96 ~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
-||=+|..+++++..-||+|+|
T Consensus 25 ~~~~~inflil~~lL~~fl~kP 46 (167)
T PRK08475 25 IIERTINFLIFVGILWYFAAKP 46 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777765
No 70
>PF03013 Pyr_excise: Pyrimidine dimer DNA glycosylase; InterPro: IPR004260 Pyrimidine dimer DNA glycosylases are enzymes responsible for initiating the base excision repair pathway, excising pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond []. One such enzyme is T4 endonuclease V, an enzyme responsible for the first step of a pyrimidine-dimer-specific excision-repair pathway []. Bacteriophage T4 that are deficient in these enzymes are extremely sensitive to UV.; PDB: 2FCC_B 1ENJ_A 1ENI_A 1ENK_A 1VAS_A 2END_A.
Probab=20.24 E-value=64 Score=25.22 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=10.1
Q ss_pred hHHHHHHHcCCCCCCCCC
Q 031770 8 LFMKELKRRGMTPTSLLE 25 (153)
Q Consensus 8 lF~kELkRRgmap~s~~~ 25 (153)
+-|+|+++||..+.+...
T Consensus 67 ~l~~EM~~RGY~~~~~~~ 84 (130)
T PF03013_consen 67 LLMAEMQRRGYKPNSPWF 84 (130)
T ss_dssp HHHHHHHHTT---S--S-
T ss_pred HHHHHHHHcCCCCChhhh
Confidence 458999999999987544
No 71
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=20.02 E-value=89 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 93 FFLGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
|.+||+=+|+|.+++ .++|||.
T Consensus 4 F~iG~~ElliIlvVa----LlvfGP~ 25 (90)
T PRK14857 4 FGIGLPEMAVILVIA----LLVFGPK 25 (90)
T ss_pred ccccHHHHHHHHHHH----HHHcCch
Confidence 457777666555542 3778874
Done!