Query 031770
Match_columns 153
No_of_seqs 27 out of 29
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf4_B Protein (activated P21C 74.7 1.8 6.1E-05 28.1 2.2 19 117-135 15-38 (44)
2 1tm9_A GI3844938, hypothetical 45.5 12 0.00042 28.7 2.4 63 56-127 52-117 (137)
3 2rdd_B UPF0092 membrane protei 35.6 23 0.00079 21.0 2.1 16 95-114 4-19 (37)
4 2l16_A SEC-independent protein 26.7 37 0.0013 23.4 2.2 21 94-118 4-24 (78)
5 1x8b_A WEE1HU, WEE1-like prote 24.6 28 0.00095 25.0 1.3 29 115-143 178-206 (289)
6 3fyr_A Sporulation inhibitor S 23.2 25 0.00085 22.8 0.8 15 7-21 29-43 (48)
7 1vf5_B Subunit IV; photosynthe 20.4 1.5E+02 0.0051 22.7 4.8 24 113-137 55-78 (160)
8 3vw7_A Proteinase-activated re 20.3 97 0.0033 24.2 3.7 24 83-106 389-412 (484)
9 2k8j_X P7TM2; P7 polypeptide, 20.1 31 0.001 20.6 0.6 13 94-106 10-22 (29)
10 3tij_A NUPC family protein; me 19.9 66 0.0023 28.6 3.0 24 90-113 100-123 (424)
No 1
>1cf4_B Protein (activated P21CDC42HS kinase); CDC42/ACK GTPase complex, G protein, transferase; HET: GNP; NMR {Homo sapiens}
Probab=74.67 E-value=1.8 Score=28.10 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=12.9
Q ss_pred CccccCCCCCCC-----CCCCCCC
Q 031770 117 PTFVHDASNSPM-----SPAQYGD 135 (153)
Q Consensus 117 ~~FiH~g~~~~~-----~pp~yid 135 (153)
-||||-|+..+. .+|.|||
T Consensus 15 ~SFiHtgHGd~~~~~sWG~P~~id 38 (44)
T 1cf4_B 15 NSFIHTGHGDSDPRHCWGFPDRID 38 (44)
T ss_dssp SCCCCCCCCCCCCSSCCCSSCCCC
T ss_pred ccceecCCCCCCcccccCChhHHh
Confidence 489999987544 3455555
No 2
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=45.47 E-value=12 Score=28.69 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=38.3
Q ss_pred hhccchHHHHHH-hHhhhccCccCcchhHHHHHhhcch--hhhhhhHHHHHHHHHHHHHHHhhcCccccCCCCCC
Q 031770 56 EIDKSLADQRER-SMALNSEGLEGLVPRAKLLLTLGGT--FFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSP 127 (153)
Q Consensus 56 e~~r~~~~QreR-SmaLNSEGLEGLipRAk~Ll~lG~t--fFl~F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~~ 127 (153)
++-+++.+|-|- ..|.|+ -|-|-+.|.| +.-+|.--=--....||++||++-=.|+||..+..
T Consensus 52 ei~k~e~~q~ei~k~ai~n---------iktlssvgasgqy~as~fst~~e~aiifci~yflyhf~fl~d~nkkq 117 (137)
T 1tm9_A 52 EITKDENQQIEITKIAVNN---------IKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQ 117 (137)
T ss_dssp TTSCSHHHHHHHHHHHHHH---------HHHHTTCCSSCCCSTHHHHSCHHHHHHHHHHHHHHHTTCSCCCCCSS
T ss_pred HHhhCcchhhhHHHHHHhh---------hhhHhhcCcchhhHHHHhccCCCceehhhHHHHHHHhcccccccHHH
Confidence 445567888773 344443 4666666732 23333221112234589999999999999998764
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=35.64 E-value=23 Score=21.00 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=7.6
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 031770 95 LGFWPLILVTVGFFSALYFY 114 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~ 114 (153)
..++|++++ |++.||+
T Consensus 4 ~~~l~~v~~----~~ifYFl 19 (37)
T 2rdd_B 4 SLILMLVVF----GLIFYFM 19 (37)
T ss_dssp HHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHH----HHHHHHH
Confidence 345555544 4444543
No 4
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=26.66 E-value=37 Score=23.44 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=13.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcCc
Q 031770 94 FLGFWPLILVTVGFFSALYFYFGPT 118 (153)
Q Consensus 94 Fl~F~Pli~~~~~~F~a~Y~~fG~~ 118 (153)
-+|+|-+|+|.+++ .++|||.
T Consensus 4 ~ig~~ElliIlvVa----LlvfGpk 24 (78)
T 2l16_A 4 NIGIPGLILIFVIA----LIIFGPS 24 (78)
T ss_dssp SSCHHHHHHHHHHH----HHHSCTT
T ss_pred CCCHHHHHHHHHHH----hheeCcc
Confidence 36777777665543 5688885
No 5
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=24.61 E-value=28 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=19.4
Q ss_pred hcCccccCCCCCCCCCCCCCCchhhcccc
Q 031770 115 FGPTFVHDASNSPMSPAQYGDPYALLEDE 143 (153)
Q Consensus 115 fG~~FiH~g~~~~~~pp~yidP~~LLede 143 (153)
||.+-..+......+++.|++|+.+....
T Consensus 178 fg~~~~~~~~~~~~gt~~y~aPE~~~~~~ 206 (289)
T 1x8b_A 178 LGHVTRISSPQVEEGDSRFLANEVLQENY 206 (289)
T ss_dssp CTTCEETTCSCCCCCCGGGCCHHHHTTCC
T ss_pred cccccccCCccccCCCccccChhHhcCCC
Confidence 45444444444556889999999987653
No 6
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=23.23 E-value=25 Score=22.82 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=10.3
Q ss_pred hhHHHHHHHcCCCCC
Q 031770 7 SLFMKELKRRGMTPT 21 (153)
Q Consensus 7 SlF~kELkRRgmap~ 21 (153)
.+..+|+.||++.+.
T Consensus 29 ~LL~~Ei~RR~L~~~ 43 (48)
T 3fyr_A 29 ELIENEIKRRSLGHI 43 (48)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCccc
Confidence 466899999999775
No 7
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=20.38 E-value=1.5e+02 Score=22.66 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.7
Q ss_pred HhhcCccccCCCCCCCCCCCCCCch
Q 031770 113 FYFGPTFVHDASNSPMSPAQYGDPY 137 (153)
Q Consensus 113 ~~fG~~FiH~g~~~~~~pp~yidP~ 137 (153)
.+|.|+..-| ...|..+|..|-|+
T Consensus 55 ~~f~P~~Lgd-pAnPl~TP~hI~PE 78 (160)
T 1vf5_B 55 SVLDPAMVGE-PANPFATPLEILPE 78 (160)
T ss_dssp HHHSCCBCCC-BCCSSCCCSCCCCT
T ss_pred HhcCcHHHHh-cccccCCCCCCCCc
Confidence 3455665544 34577888888884
No 8
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=20.29 E-value=97 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.168 Sum_probs=18.5
Q ss_pred HHHHHhhcchhhhhhhHHHHHHHH
Q 031770 83 AKLLLTLGGTFFLGFWPLILVTVG 106 (153)
Q Consensus 83 Ak~Ll~lG~tfFl~F~Pli~~~~~ 106 (153)
+|.|+-+=++|++...|+.++.++
T Consensus 389 ~k~l~~v~~~F~icwlP~~i~~l~ 412 (484)
T 3vw7_A 389 LFLSAAVFCIFIICFGPTNVLLIA 412 (484)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456677888999999998876543
No 9
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=20.07 E-value=31 Score=20.58 Aligned_cols=13 Identities=38% Similarity=1.129 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHH
Q 031770 94 FLGFWPLILVTVG 106 (153)
Q Consensus 94 Fl~F~Pli~~~~~ 106 (153)
+++.|||.+...+
T Consensus 10 ~~g~WpllLllLa 22 (29)
T 2k8j_X 10 LYGVWPLLLLLLA 22 (29)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHh
Confidence 6899999887654
No 10
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=19.86 E-value=66 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHH
Q 031770 90 GGTFFLGFWPLILVTVGFFSALYF 113 (153)
Q Consensus 90 G~tfFl~F~Pli~~~~~~F~a~Y~ 113 (153)
|..|++.-+|.|+.++++.+.+|-
T Consensus 100 ~~~Faf~vLp~IiFfsalisiLyy 123 (424)
T 3tij_A 100 GFIFAFRVLPTLIFFSALISVLYY 123 (424)
T ss_dssp GCCHHHHTHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHhHHHHHHHHHHHHHHH
Confidence 567889999999999999999984
Done!