Query 031770
Match_columns 153
No_of_seqs 27 out of 29
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 07:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031770.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031770hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tm9a_ a.225.1.1 (A:) Hypothe 45.5 5.7 0.00042 28.7 2.4 63 56-127 52-117 (137)
2 d2enda_ a.18.1.1 (A:) T4 endon 25.9 13 0.00098 26.8 1.7 15 8-22 72-86 (137)
3 d1u5ra_ d.144.1.7 (A:) Serine/ 25.4 13 0.00096 27.6 1.6 17 125-141 169-185 (309)
4 d2axti1 f.23.37.1 (I:1-35) Pho 20.8 30 0.0022 19.9 2.2 16 101-116 7-22 (35)
5 d1qf8a_ g.41.4.1 (A:) Casein k 20.4 10 0.00073 28.0 -0.0 7 115-121 153-159 (173)
6 d1jb0i_ f.23.17.1 (I:) Subunit 20.2 19 0.0014 21.2 1.2 31 91-121 3-33 (38)
7 d1pv0a_ a.2.12.1 (A:) Sporulat 19.8 24 0.0018 21.4 1.7 15 7-21 27-41 (46)
8 d1jb0x_ f.23.20.1 (X:) Subunit 18.3 57 0.0042 17.8 3.0 21 93-113 4-24 (29)
9 d1fota_ d.144.1.7 (A:) cAMP-de 16.6 31 0.0022 25.4 2.0 16 126-141 160-175 (316)
10 d1xl4a2 f.14.1.1 (A:23-138) In 16.6 63 0.0046 20.4 3.4 23 95-117 29-51 (116)
No 1
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=45.47 E-value=5.7 Score=28.69 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=38.3
Q ss_pred hhccchHHHHHH-hHhhhccCccCcchhHHHHHhhcch--hhhhhhHHHHHHHHHHHHHHHhhcCccccCCCCCC
Q 031770 56 EIDKSLADQRER-SMALNSEGLEGLVPRAKLLLTLGGT--FFLGFWPLILVTVGFFSALYFYFGPTFVHDASNSP 127 (153)
Q Consensus 56 e~~r~~~~QreR-SmaLNSEGLEGLipRAk~Ll~lG~t--fFl~F~Pli~~~~~~F~a~Y~~fG~~FiH~g~~~~ 127 (153)
++-+++.+|-|- ..|.|+ -|-|-+.|.| +.-+|.--=--....||++||++-=.|+||..+..
T Consensus 52 ei~k~e~~q~ei~k~ai~n---------iktlssvgasgqy~as~fst~~e~aiifci~yflyhf~fl~d~nkkq 117 (137)
T d1tm9a_ 52 EITKDENQQIEITKIAVNN---------IKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQ 117 (137)
T ss_dssp TTSCSHHHHHHHHHHHHHH---------HHHHTTCCSSCCCSTHHHHSCHHHHHHHHHHHHHHHTTCSCCCCCSS
T ss_pred HHhhCcchhhhHHHHHHhh---------hhhHhhcCcchhhHHHHhccCCCceehhhHHHHHHHhcccccccHHH
Confidence 445567888773 344443 4666666732 23333221112234589999999999999998764
No 2
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=25.88 E-value=13 Score=26.81 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.3
Q ss_pred hHHHHHHHcCCCCCC
Q 031770 8 LFMKELKRRGMTPTS 22 (153)
Q Consensus 8 lF~kELkRRgmap~s 22 (153)
.-++||+|||+.|.-
T Consensus 72 ~L~~Em~~RGy~~~~ 86 (137)
T d2enda_ 72 ELIAECLKRGFNIKD 86 (137)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCCCCh
Confidence 457999999998773
No 3
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.38 E-value=13 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCchhhcc
Q 031770 125 NSPMSPAQYGDPYALLE 141 (153)
Q Consensus 125 ~~~~~pp~yidP~~LLe 141 (153)
...+++|.|++|+.+..
T Consensus 169 ~~~~GT~~Y~APE~~~~ 185 (309)
T d1u5ra_ 169 NSFVGTPYWMAPEVILA 185 (309)
T ss_dssp CCCCSCGGGCCHHHHTT
T ss_pred CccccCccccCHHHHhc
Confidence 34578899999999974
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.79 E-value=30 Score=19.94 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 031770 101 ILVTVGFFSALYFYFG 116 (153)
Q Consensus 101 i~~~~~~F~a~Y~~fG 116 (153)
.+-+++.|.+..|.||
T Consensus 7 ~Vy~vV~fFv~lFiFG 22 (35)
T d2axti1 7 TVYIVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHh
Confidence 3445555666666777
No 5
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.39 E-value=10 Score=27.95 Aligned_cols=7 Identities=57% Similarity=1.132 Sum_probs=2.7
Q ss_pred hcCcccc
Q 031770 115 FGPTFVH 121 (153)
Q Consensus 115 fG~~FiH 121 (153)
||++|.|
T Consensus 153 FG~sFph 159 (173)
T d1qf8a_ 153 FGTGFPH 159 (173)
T ss_dssp TCSSHHH
T ss_pred ccCchHH
Confidence 3333333
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=20.22 E-value=19 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhhcCcccc
Q 031770 91 GTFFLGFWPLILVTVGFFSALYFYFGPTFVH 121 (153)
Q Consensus 91 ~tfFl~F~Pli~~~~~~F~a~Y~~fG~~FiH 121 (153)
|.+--+|+|-|+|-++-...--.+.|--|||
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHhee
Confidence 4566788899888776555544555555555
No 7
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=19.83 E-value=24 Score=21.39 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.3
Q ss_pred hhHHHHHHHcCCCCC
Q 031770 7 SLFMKELKRRGMTPT 21 (153)
Q Consensus 7 SlF~kELkRRgmap~ 21 (153)
.|+++|+.||.++-.
T Consensus 27 ~Lie~Ei~RRsL~hk 41 (46)
T d1pv0a_ 27 ELIENEIKRRSLGHI 41 (46)
T ss_dssp HHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhhhhh
Confidence 478999999998654
No 8
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=18.27 E-value=57 Score=17.85 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 031770 93 FFLGFWPLILVTVGFFSALYF 113 (153)
Q Consensus 93 fFl~F~Pli~~~~~~F~a~Y~ 113 (153)
.|-.||-+.+..+-|.++-|.
T Consensus 4 ~frt~wa~lllainflvaayy 24 (29)
T d1jb0x_ 4 AFRTFWAVLLLAINFLVAAYY 24 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366789988887777777764
No 9
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.61 E-value=31 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=12.6
Q ss_pred CCCCCCCCCCchhhcc
Q 031770 126 SPMSPAQYGDPYALLE 141 (153)
Q Consensus 126 ~~~~pp~yidP~~LLe 141 (153)
+..+.|.|++|+.+..
T Consensus 160 ~~~Gt~~Y~APE~l~~ 175 (316)
T d1fota_ 160 TLCGTPDYIAPEVVST 175 (316)
T ss_dssp CCCSCTTTCCHHHHTT
T ss_pred cccCcccccCHHHHcC
Confidence 4567899999998754
No 10
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=16.56 E-value=63 Score=20.41 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcC
Q 031770 95 LGFWPLILVTVGFFSALYFYFGP 117 (153)
Q Consensus 95 l~F~Pli~~~~~~F~a~Y~~fG~ 117 (153)
+.+.-+.+++..+|+++|++.+.
T Consensus 29 ~~~~~~~~~~~~~fa~~y~~~~~ 51 (116)
T d1xl4a2 29 TLITGLYLVTNALFALAYLACGD 51 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455666778888887654
Done!