Query 031771
Match_columns 153
No_of_seqs 191 out of 1099
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0586 DedA Uncharacterized m 100.0 4.7E-29 1E-33 184.7 13.3 128 1-129 34-170 (208)
2 COG0398 Uncharacterized conser 100.0 1.4E-27 3E-32 178.1 15.7 120 2-121 65-184 (223)
3 PF09335 SNARE_assoc: SNARE as 100.0 2.5E-27 5.4E-32 161.5 14.0 119 3-121 1-122 (123)
4 PRK10847 hypothetical protein; 99.9 3.4E-26 7.3E-31 170.7 10.3 125 2-127 48-182 (219)
5 COG1238 Predicted membrane pro 99.7 2.8E-16 6.1E-21 111.4 12.7 122 1-124 33-157 (161)
6 KOG3140 Predicted membrane pro 99.6 1.6E-15 3.5E-20 115.7 7.7 137 1-137 110-248 (275)
7 PF06695 Sm_multidrug_ex: Puta 98.0 0.00017 3.8E-09 49.0 10.4 99 16-114 14-120 (121)
8 PRK01844 hypothetical protein; 94.2 0.29 6.2E-06 30.0 5.9 34 18-51 3-36 (72)
9 PRK00523 hypothetical protein; 93.1 0.61 1.3E-05 28.6 5.9 33 19-51 5-37 (72)
10 PRK11677 hypothetical protein; 92.3 0.38 8.2E-06 33.3 4.9 25 22-46 3-27 (134)
11 PF03672 UPF0154: Uncharacteri 89.3 1.3 2.7E-05 26.7 4.5 28 24-51 2-29 (64)
12 COG3763 Uncharacterized protei 88.2 2.5 5.4E-05 25.8 5.3 33 18-50 3-35 (71)
13 PF07155 ECF-ribofla_trS: ECF- 85.5 1.6 3.6E-05 30.8 4.2 33 4-36 37-69 (169)
14 PF06295 DUF1043: Protein of u 83.4 3 6.6E-05 28.5 4.6 22 25-46 2-23 (128)
15 PRK09609 hypothetical protein; 83.0 8.9 0.00019 30.3 7.5 27 7-33 45-71 (312)
16 TIGR02359 thiW thiW protein. L 82.2 3 6.4E-05 29.8 4.3 33 4-36 33-65 (160)
17 PRK10847 hypothetical protein; 81.5 11 0.00025 28.0 7.5 66 60-125 17-98 (219)
18 PRK13661 hypothetical protein; 81.0 3.7 8E-05 29.9 4.5 33 4-36 39-71 (182)
19 COG0575 CdsA CDP-diglyceride s 80.7 1.3 2.9E-05 34.0 2.3 31 22-52 136-166 (265)
20 PRK11624 cdsA CDP-diglyceride 79.9 1.5 3.2E-05 34.2 2.3 37 23-59 155-191 (285)
21 PF01148 CTP_transf_1: Cytidyl 79.7 2.5 5.5E-05 31.6 3.5 27 20-46 130-156 (259)
22 COG2426 Predicted membrane pro 79.0 18 0.00039 24.9 8.1 104 16-121 18-137 (142)
23 PF06305 DUF1049: Protein of u 78.8 11 0.00024 22.2 5.6 11 56-66 55-65 (68)
24 COG0398 Uncharacterized conser 74.5 12 0.00026 28.1 5.9 67 57-124 34-107 (223)
25 PF10319 7TM_GPCR_Srj: Serpent 74.5 39 0.00084 26.8 8.8 91 16-111 195-292 (310)
26 COG3105 Uncharacterized protei 74.4 13 0.00028 25.6 5.3 26 20-45 6-31 (138)
27 COG1238 Predicted membrane pro 72.9 24 0.00052 25.2 6.8 65 64-129 13-82 (161)
28 COG4956 Integral membrane prot 71.8 41 0.00089 26.8 8.2 86 27-124 42-130 (356)
29 COG4035 Predicted membrane pro 69.3 15 0.00032 23.7 4.5 82 30-113 10-103 (108)
30 TIGR03750 conj_TIGR03750 conju 68.5 32 0.0007 23.0 8.3 38 31-69 53-94 (111)
31 PF12822 DUF3816: Protein of u 68.0 8.4 0.00018 27.1 3.6 32 4-35 30-61 (172)
32 PF11990 DUF3487: Protein of u 64.3 42 0.00091 22.7 8.4 37 32-69 57-97 (121)
33 COG2059 ChrA Chromate transpor 64.0 19 0.00041 26.6 4.8 64 63-128 41-107 (195)
34 PF09512 ThiW: Thiamine-precur 62.7 21 0.00046 25.2 4.6 26 4-29 29-55 (150)
35 PF06897 DUF1269: Protein of u 59.2 48 0.001 21.7 6.0 15 56-70 66-80 (102)
36 PRK12821 aspartyl/glutamyl-tRN 57.4 18 0.00039 30.2 4.1 27 6-32 99-125 (477)
37 KOG1109 Vacuole membrane prote 57.1 6.4 0.00014 32.0 1.4 86 26-112 216-321 (440)
38 PF10031 DUF2273: Small integr 56.3 36 0.00078 19.4 4.8 24 16-44 27-50 (51)
39 PF13314 DUF4083: Domain of un 56.0 40 0.00086 19.8 4.3 14 55-68 45-58 (58)
40 PF03613 EIID-AGA: PTS system 54.9 56 0.0012 25.3 6.3 95 14-113 131-228 (264)
41 PLN02953 phosphatidate cytidyl 52.8 9 0.0002 31.3 1.7 32 22-54 271-302 (403)
42 PF08285 DPM3: Dolichol-phosph 52.7 57 0.0012 20.9 5.1 50 20-71 41-90 (91)
43 COG1177 PotC ABC-type spermidi 52.6 1.1E+02 0.0023 23.7 7.8 102 13-114 66-179 (267)
44 PF07332 DUF1469: Protein of u 50.0 72 0.0016 21.0 5.6 26 17-42 70-95 (121)
45 PF04246 RseC_MucC: Positive r 49.7 59 0.0013 22.0 5.2 25 22-46 96-120 (135)
46 COG1811 Uncharacterized membra 49.6 1.1E+02 0.0024 23.1 6.9 40 55-95 76-123 (228)
47 PRK03072 heat shock protein Ht 48.9 63 0.0014 25.1 5.8 35 8-43 20-54 (288)
48 COG4720 Predicted membrane pro 48.9 62 0.0013 23.5 5.2 33 6-38 41-73 (177)
49 PRK10862 SoxR reducing system 48.1 51 0.0011 23.2 4.7 23 24-46 105-127 (154)
50 PF11286 DUF3087: Protein of u 47.9 91 0.002 22.4 5.9 56 24-79 51-117 (165)
51 PLN02594 phosphatidate cytidyl 46.6 18 0.0004 29.0 2.5 33 26-59 131-163 (342)
52 PF12123 Amidase02_C: N-acetyl 46.3 16 0.00036 20.2 1.6 18 55-72 26-43 (45)
53 PRK11677 hypothetical protein; 45.6 60 0.0013 22.5 4.6 27 18-44 3-29 (134)
54 COG3086 RseC Positive regulato 45.6 78 0.0017 22.3 5.2 24 23-46 104-127 (150)
55 COG0170 SEC59 Dolichol kinase 44.4 36 0.00079 25.3 3.7 29 18-46 112-140 (216)
56 PRK12996 ulaA PTS system ascor 42.1 65 0.0014 27.0 5.1 44 3-46 145-205 (463)
57 TIGR03370 PEPCTERM_Roseo varia 40.8 25 0.00055 17.1 1.6 14 1-14 1-14 (26)
58 COG4732 Predicted membrane pro 40.3 54 0.0012 23.3 3.7 29 3-31 37-66 (177)
59 PRK14407 membrane protein; Pro 39.0 72 0.0016 24.0 4.5 31 20-50 6-37 (219)
60 PRK04897 heat shock protein Ht 39.0 98 0.0021 24.2 5.5 24 20-43 41-64 (298)
61 TIGR00828 EIID-AGA PTS system, 38.7 1.5E+02 0.0033 23.0 6.4 52 16-69 135-186 (271)
62 PRK03001 M48 family peptidase; 38.6 78 0.0017 24.4 4.9 39 8-46 16-54 (283)
63 PRK14400 membrane protein; Pro 38.5 1E+02 0.0022 22.9 5.2 32 20-51 6-38 (201)
64 PF13807 GNVR: G-rich domain o 37.5 53 0.0012 20.2 3.2 23 4-26 56-78 (82)
65 PRK11469 hypothetical protein; 37.4 1.6E+02 0.0035 21.4 9.5 39 87-125 122-160 (188)
66 PRK01345 heat shock protein Ht 37.3 98 0.0021 24.5 5.3 36 8-43 16-51 (317)
67 PF12072 DUF3552: Domain of un 36.7 69 0.0015 23.5 4.1 27 22-48 3-29 (201)
68 PF09335 SNARE_assoc: SNARE as 36.4 1.2E+02 0.0026 19.6 8.2 34 16-49 10-43 (123)
69 PRK10527 hypothetical protein; 36.0 61 0.0013 22.1 3.5 31 36-68 36-66 (125)
70 PRK14472 F0F1 ATP synthase sub 35.5 99 0.0022 22.0 4.7 42 8-52 6-47 (175)
71 PRK14399 membrane protein; Pro 35.4 1E+02 0.0022 23.9 4.9 36 14-49 4-40 (258)
72 PF01102 Glycophorin_A: Glycop 35.1 65 0.0014 21.9 3.5 12 34-45 83-94 (122)
73 PF01864 DUF46: Putative integ 35.0 81 0.0018 22.8 4.1 23 24-46 93-115 (175)
74 PRK02898 cobalt transport prot 34.8 26 0.00056 23.0 1.4 27 20-46 67-93 (100)
75 COG1300 SpoIIM Uncharacterized 33.2 1.5E+02 0.0032 22.1 5.3 38 7-44 85-122 (207)
76 PRK03982 heat shock protein Ht 33.0 1.4E+02 0.003 23.2 5.5 34 10-43 19-52 (288)
77 PRK00220 putative glycerol-3-p 31.9 1.5E+02 0.0032 21.9 5.1 29 23-51 7-36 (198)
78 PRK14402 membrane protein; Pro 31.6 1.9E+02 0.004 21.4 5.6 30 20-50 4-34 (198)
79 PRK14219 camphor resistance pr 31.5 1.2E+02 0.0025 20.8 4.3 25 22-46 98-122 (132)
80 PRK14419 membrane protein; Pro 29.6 2E+02 0.0042 21.2 5.5 30 22-51 5-35 (199)
81 TIGR00023 acyl-phosphate glyce 29.5 1.6E+02 0.0034 21.7 5.0 29 23-51 7-36 (196)
82 PRK14413 membrane protein; Pro 29.3 1.4E+02 0.003 22.0 4.7 28 24-51 6-34 (197)
83 TIGR00844 c_cpa1 na(+)/h(+) an 29.0 4.5E+02 0.0097 24.0 9.7 52 1-52 36-99 (810)
84 PF11283 DUF3084: Protein of u 28.9 1.5E+02 0.0033 18.5 4.1 20 30-49 11-33 (79)
85 KOG4841 Dolichol-phosphate man 27.3 93 0.002 19.9 2.9 50 19-70 44-93 (95)
86 PF02659 DUF204: Domain of unk 27.2 1.4E+02 0.003 17.4 3.7 39 87-126 8-46 (67)
87 PRK14418 membrane protein; Pro 27.1 1.7E+02 0.0036 22.3 4.9 33 17-49 6-39 (236)
88 COG4064 MtrG Tetrahydromethano 27.0 1.3E+02 0.0027 18.4 3.3 22 13-34 51-72 (75)
89 PRK14410 membrane protein; Pro 26.9 1.7E+02 0.0036 22.3 4.8 28 24-51 7-35 (235)
90 PF01004 Flavi_M: Flavivirus e 26.4 71 0.0015 19.8 2.3 21 55-75 26-46 (75)
91 PRK14395 membrane protein; Pro 26.2 2.4E+02 0.0052 20.7 5.4 22 25-46 7-29 (195)
92 COG3808 OVP1 Inorganic pyropho 26.0 3.8E+02 0.0082 23.3 7.0 87 24-116 522-627 (703)
93 PF04186 FxsA: FxsA cytoplasmi 25.7 2.1E+02 0.0046 19.1 7.1 40 7-46 13-52 (119)
94 PF04892 VanZ: VanZ like famil 25.5 66 0.0014 21.3 2.3 18 27-44 110-127 (133)
95 PRK14404 membrane protein; Pro 25.2 1.7E+02 0.0036 21.8 4.4 25 23-47 4-29 (201)
96 smart00157 PRP Major prion pro 25.1 25 0.00055 25.8 0.1 27 23-49 91-117 (217)
97 PF06341 DUF1056: Protein of u 25.0 1.4E+02 0.003 17.8 3.2 41 84-124 14-54 (63)
98 PRK14392 membrane protein; Pro 24.8 1.9E+02 0.0042 21.5 4.7 29 23-51 5-34 (207)
99 PRK14415 membrane protein; Pro 24.5 1.7E+02 0.0036 21.9 4.4 30 22-51 7-37 (216)
100 TIGR00814 stp serine transport 24.5 1.5E+02 0.0032 24.2 4.5 74 21-95 32-105 (397)
101 PRK09548 PTS system ascorbate- 24.3 2.6E+02 0.0057 24.4 6.0 44 3-46 153-213 (602)
102 TIGR02840 spore_YtaF putative 24.3 2.9E+02 0.0064 20.3 9.6 36 86-125 144-179 (206)
103 PF07456 Hpre_diP_synt_I: Hept 24.2 1.8E+02 0.0039 20.4 4.3 33 11-43 55-89 (148)
104 PRK14393 membrane protein; Pro 23.8 2.4E+02 0.0052 20.7 5.1 24 24-47 7-31 (194)
105 PRK14417 membrane protein; Pro 23.8 2.3E+02 0.0049 21.6 5.0 30 22-51 6-36 (232)
106 PF10251 PEN-2: Presenilin enh 23.7 1.3E+02 0.0028 19.5 3.2 24 97-120 47-70 (94)
107 PRK14409 membrane protein; Pro 23.7 2E+02 0.0043 21.4 4.6 28 23-50 4-32 (205)
108 COG3037 SgaT Uncharacterized p 23.4 1.7E+02 0.0038 24.6 4.6 67 3-71 153-236 (481)
109 PRK14231 camphor resistance pr 23.0 1.9E+02 0.0042 19.6 4.2 27 22-48 95-121 (129)
110 TIGR03546 conserved hypothetic 22.5 2.1E+02 0.0045 20.2 4.4 13 31-43 119-131 (154)
111 PF03390 2HCT: 2-hydroxycarbox 22.2 4.6E+02 0.01 21.8 8.5 63 55-124 80-146 (414)
112 PF10112 Halogen_Hydrol: 5-bro 22.1 3.1E+02 0.0067 19.8 7.0 23 21-43 32-54 (199)
113 PRK14403 membrane protein; Pro 22.0 2.5E+02 0.0053 20.7 4.8 27 25-51 7-34 (196)
114 PRK11103 PTS system mannose-sp 21.7 4E+02 0.0086 20.9 6.8 52 16-69 145-196 (282)
115 PRK14405 membrane protein; Pro 21.7 2.3E+02 0.005 20.9 4.6 27 24-50 7-34 (202)
116 PF10702 DUF2507: Protein of u 21.6 50 0.0011 22.5 1.0 33 33-71 21-53 (124)
117 COG2261 Predicted membrane pro 21.4 2.3E+02 0.0049 17.9 4.6 23 21-43 28-50 (82)
118 COG1133 SbmA ABC-type long-cha 21.4 3E+02 0.0065 22.2 5.3 22 24-45 143-164 (405)
119 PF10131 PTPS_related: 6-pyruv 21.4 3E+02 0.0064 24.1 5.9 45 2-46 6-51 (616)
120 PF03596 Cad: Cadmium resistan 21.4 3.4E+02 0.0073 19.9 5.5 47 84-131 111-157 (191)
121 KOG1307 K+-dependent Ca2+/Na+ 21.0 60 0.0013 27.5 1.5 26 95-120 418-443 (588)
122 COG3216 Uncharacterized protei 20.8 2.8E+02 0.006 20.3 4.7 23 23-45 144-166 (184)
123 PRK14394 membrane protein; Pro 20.7 2.1E+02 0.0046 21.1 4.2 27 24-50 7-34 (195)
124 cd02433 Nodulin-21_like_2 Nodu 20.5 3.8E+02 0.0083 20.2 6.4 37 7-43 34-72 (234)
125 PRK14406 membrane protein; Pro 20.5 2.6E+02 0.0056 20.7 4.6 23 24-46 5-28 (199)
No 1
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.96 E-value=4.7e-29 Score=184.74 Aligned_cols=128 Identities=20% Similarity=0.368 Sum_probs=121.1
Q ss_pred CccchHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc----CchHHHHHHHHHhcchhH
Q 031771 1 MWYLESSFQLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK----DYPQFRSVALAIQRSGFK 71 (153)
Q Consensus 1 ~p~P~~~~~~~~G~l-----fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~----~~~~~~~~~~~~~~~g~~ 71 (153)
.|+|++++++++|++ ++++..++.+++|+++||.++|++||++|++..+++.+ ++++++|.+++++|||.+
T Consensus 34 ~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a~~~f~r~G~~ 113 (208)
T COG0586 34 PPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFERHGLF 113 (208)
T ss_pred CCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHHHHHHHHcCch
Confidence 489999999999999 78899999999999999999999999999998887655 578999999999999999
Q ss_pred hhHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhccccc
Q 031771 72 IVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 129 (153)
Q Consensus 72 ~~~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~ 129 (153)
.++++||+|++| +++++.||++|||+++|..+|.+|+++|..++++.|+.+++..+.
T Consensus 114 ~vf~~RFip~vR-t~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~~ 170 (208)
T COG0586 114 AIFLGRFIPGVR-TLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVIDV 170 (208)
T ss_pred hhhhhcccchhH-hhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 999999999999 999999999999999999999999999999999999999987663
No 2
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=178.08 Aligned_cols=120 Identities=34% Similarity=0.687 Sum_probs=117.5
Q ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhhHHHhhcCC
Q 031771 2 WYLESSFQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL 81 (153)
Q Consensus 2 p~P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~P~ 81 (153)
++|++++++++|++||++.|.+++++|+++|+.++|+++|+.++|+.+++.+++++.++.+++++|+|++.+++.|++|+
T Consensus 65 ~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~ 144 (223)
T COG0398 65 IIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPI 144 (223)
T ss_pred cCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred CChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHh
Q 031771 82 LPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 121 (153)
Q Consensus 82 ~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~ 121 (153)
+|++++||++|.+++|+++|.+++.+|++|.+..|+++|+
T Consensus 145 ~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~ 184 (223)
T COG0398 145 FPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGS 184 (223)
T ss_pred CCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.95 E-value=2.5e-27 Score=161.54 Aligned_cols=119 Identities=34% Similarity=0.633 Sum_probs=110.8
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHH---HHHHHhcchhHhhHHHhhc
Q 031771 3 YLESSFQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 79 (153)
Q Consensus 3 ~P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~r~~ 79 (153)
+|++++++++|+++|++.+++++.+|+++|+.++|++||+++++..+++..++++.++ .++.++|||.+.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997667666665555555 8999999999999999999
Q ss_pred CCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHh
Q 031771 80 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 121 (153)
Q Consensus 80 P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~ 121 (153)
|++|++++|+++|++++|+++|+.++++|.+||+.+++++|+
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~ 122 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGY 122 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997
No 4
>PRK10847 hypothetical protein; Provisional
Probab=99.94 E-value=3.4e-26 Score=170.74 Aligned_cols=125 Identities=17% Similarity=0.290 Sum_probs=113.3
Q ss_pred ccchHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh---hcCchHHHHHHHHHhcchhH
Q 031771 2 WYLESSFQLGGGYLF-------GLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISK---LKDYPQFRSVALAIQRSGFK 71 (153)
Q Consensus 2 p~P~~~~~~~~G~lf-------g~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~---~~~~~~~~~~~~~~~~~g~~ 71 (153)
|+|++.+.+++|.+. +++..++++++|+.+|+.++|++||+.|++..+++ ..++++++|.+++++|||.+
T Consensus 48 ~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~ 127 (219)
T PRK10847 48 FLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGK 127 (219)
T ss_pred CCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccccCCHHHHHHHHHHHHHcCCE
Confidence 689999999999884 35678899999999999999999999999887532 22457799999999999999
Q ss_pred hhHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhccc
Q 031771 72 IVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLS 127 (153)
Q Consensus 72 ~~~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~ 127 (153)
.++++|++|++| +++++.+|++|||+++|+..|.+|+++|+..++.+|+.+++..
T Consensus 128 ~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~~~ 182 (219)
T PRK10847 128 TIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTLP 182 (219)
T ss_pred EEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999 8999999999999999999999999999999999999998764
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.71 E-value=2.8e-16 Score=111.36 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=105.7
Q ss_pred CccchHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc-CchHHHHHHH-HHhcchhHhhHHHh
Q 031771 1 MWYLESSFQLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK-DYPQFRSVAL-AIQRSGFKIVLLLR 77 (153)
Q Consensus 1 ~p~P~~~~~~~~G~l-fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~r 77 (153)
+|+|.|++.+..-.. .+++.-.+++++|+++|+.+.|++||+.++...+++.. ++++.++.++ +++|+|.+.++++-
T Consensus 33 lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ryg~~~ll~s~ 112 (161)
T COG1238 33 LPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQEKWYRRYGVWTLLLSW 112 (161)
T ss_pred cCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 599999877665555 88999999999999999999999999998876665443 3577777776 89999999999999
Q ss_pred hcCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhh
Q 031771 78 LVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 124 (153)
Q Consensus 78 ~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~ 124 (153)
+.| +| ++++.+||..|+|+++|+....+|+..+....+++....+
T Consensus 113 lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 113 LPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred ccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 866 89 9999999999999999999999999999999998876544
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.6e-15 Score=115.68 Aligned_cols=137 Identities=28% Similarity=0.481 Sum_probs=117.3
Q ss_pred CccchH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcch-hHhhHHHhh
Q 031771 1 MWYLES-SFQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG-FKIVLLLRL 78 (153)
Q Consensus 1 ~p~P~~-~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~r~ 78 (153)
+++|+. .+.+.+|.+||.+.|+++++..+.+|+++||.+++.++|+++.++++++.+.-+.+...+|++ +..+.+.|+
T Consensus 110 faipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~~~~~~~~~~~~~~~~~lrl 189 (275)
T KOG3140|consen 110 FAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQQDVELNRNSLLNYMLFLRL 189 (275)
T ss_pred cccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 367864 789999999999999999999999999999999999999999988775333333333345555 566899999
Q ss_pred cCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhcccccccCCcccc
Q 031771 79 VPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNEFS 137 (153)
Q Consensus 79 ~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 137 (153)
.|..|+.+.|+++++.+++.+.|++++++|.+|.+++++-.|..+++.++..+..+..+
T Consensus 190 sp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~~~~ 248 (275)
T KOG3140|consen 190 SPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFSWSS 248 (275)
T ss_pred ccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccCCcc
Confidence 99999999999999999999999999999999999999999999998887776665443
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.99 E-value=0.00017 Score=49.03 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHhhcC-chHHHHHHHHHhcchhHhhHHHhhcC--CCChhhH
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF-----VISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVP--LLPFNML 87 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~-----~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~r~~P--~~p~~~~ 87 (153)
++++.+.+++.+|+++-....++.-++.-+-. .++..++ ++|.++-++..+|||+..+.+.=.+| +.--..-
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIPlP~TG~wtg 93 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIPLPGTGAWTG 93 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCcchHHHH
Confidence 67889999999999998888877777664321 1111111 34566677889999998887766666 3335677
Q ss_pred HHHhhcCCCChhHHHHHHHHhHHHHHH
Q 031771 88 NYLLSVTPVPLLEYMLASWIGMMPITL 114 (153)
Q Consensus 88 ~~~aG~~~~~~~~f~~~~~lg~~~~~~ 114 (153)
+.++-+.+++.++=+.+..+|.+.+..
T Consensus 94 al~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 94 ALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 888889999999999999999887654
No 8
>PRK01844 hypothetical protein; Provisional
Probab=94.24 E-value=0.29 Score=30.04 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Q 031771 18 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 18 ~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~ 51 (153)
.+..+++.+++..+|...+|+++|+.-++.+++.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4556677788999999999999999877766654
No 9
>PRK00523 hypothetical protein; Provisional
Probab=93.07 E-value=0.61 Score=28.61 Aligned_cols=33 Identities=6% Similarity=0.045 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Q 031771 19 PVGFVADSIGATIGAGAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 19 ~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~ 51 (153)
+..+++.+++..+|...+|+++|+.-++.+++.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~N 37 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIREN 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 345566678889999999999999877666644
No 10
>PRK11677 hypothetical protein; Provisional
Probab=92.32 E-value=0.38 Score=33.29 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
++++.+|-++|..++|+++|...+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 4667788899999999999986543
No 11
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=89.26 E-value=1.3 Score=26.65 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHh
Q 031771 24 ADSIGATIGAGAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~g~~~~~~~ 51 (153)
+..++..+|..++|+++|+..++.+++.
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~~N 29 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLKEN 29 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3456778889999999999877666543
No 12
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.20 E-value=2.5 Score=25.77 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 031771 18 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 18 ~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~ 50 (153)
.|.+++...++-..|-..+|+++|+.-++.+.+
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777888888899999876655544
No 13
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=85.50 E-value=1.6 Score=30.83 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.4
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 031771 4 LESSFQLGGGYLFGLPVGFVADSIGATIGAGAA 36 (153)
Q Consensus 4 P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~ 36 (153)
|++.....+|.+||+..|.++..+|..++|.+.
T Consensus 37 ~~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 37 LGSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999998844
No 14
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=83.36 E-value=3 Score=28.49 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 031771 25 DSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 25 ~~~g~~lG~~~~y~igr~~g~~ 46 (153)
+++|.++|..++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677888888888998887654
No 15
>PRK09609 hypothetical protein; Provisional
Probab=83.00 E-value=8.9 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 031771 7 SFQLGGGYLFGLPVGFVADSIGATIGA 33 (153)
Q Consensus 7 ~~~~~~G~lfg~~~~~~~~~~g~~lG~ 33 (153)
+....+|.+|||..|.++..+...+|.
T Consensus 45 IPviI~G~LFGPv~G~ivG~lsDLLs~ 71 (312)
T PRK09609 45 LPIKITGFIFGPIVGFFTGLLSDLISF 71 (312)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 557788889998888877777666553
No 16
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=82.20 E-value=3 Score=29.78 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=28.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 031771 4 LESSFQLGGGYLFGLPVGFVADSIGATIGAGAA 36 (153)
Q Consensus 4 P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~ 36 (153)
++++..+.+|.++||+++.+.+.+++.+++...
T Consensus 33 ~~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 33 VQHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hhHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999999999998887754
No 17
>PRK10847 hypothetical protein; Provisional
Probab=81.55 E-value=11 Score=27.98 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHhcchhHh---hHHHhh-------cCCCChhhHHHHhhcC------CCChhHHHHHHHHhHHHHHHHHHHHHhhh
Q 031771 60 SVALAIQRSGFKI---VLLLRL-------VPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 123 (153)
Q Consensus 60 ~~~~~~~~~g~~~---~~~~r~-------~P~~p~~~~~~~aG~~------~~~~~~f~~~~~lg~~~~~~~~~~~G~~~ 123 (153)
.+++.++++|.+. +++.-+ .|.+|.+.+-..+|.. .+++..-+..+.+|+.....+.-++|+..
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777543 333322 4778988888877743 26777778888899999999999999887
Q ss_pred hc
Q 031771 124 KD 125 (153)
Q Consensus 124 ~~ 125 (153)
++
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 54
No 18
>PRK13661 hypothetical protein; Provisional
Probab=81.04 E-value=3.7 Score=29.93 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=29.4
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 031771 4 LESSFQLGGGYLFGLPVGFVADSIGATIGAGAA 36 (153)
Q Consensus 4 P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~ 36 (153)
|++......+.+||+..|.++..+|..++|.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 457889999999999999999999999999873
No 19
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=80.68 E-value=1.3 Score=33.98 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhh
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKPFVISKL 52 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~ 52 (153)
.+...++...+|+.+|+.||++|++.+..+.
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~i 166 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAPKI 166 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCCcC
Confidence 4556788999999999999999987544333
No 20
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=79.93 E-value=1.5 Score=34.24 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHH
Q 031771 23 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 59 (153)
Q Consensus 23 ~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~ 59 (153)
+...+-...+|+.+|+.||.+||+.+-.++..+|.+|
T Consensus 155 l~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwE 191 (285)
T PRK11624 155 LYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWE 191 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchh
Confidence 3344556789999999999999876655555444444
No 21
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=79.71 E-value=2.5 Score=31.60 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 20 VGFVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 20 ~~~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
...+...+....||..+|..||++||.
T Consensus 130 ~~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 130 PLALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567777889999999999999987
No 22
>COG2426 Predicted membrane protein [Function unknown]
Probab=79.02 E-value=18 Score=24.85 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH----hhcC---------chHHHHHHHHHhcchhHhhHHHhhcCCC
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS----KLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLL 82 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~----~~~~---------~~~~~~~~~~~~~~g~~~~~~~r~~P~~ 82 (153)
++++.+...+.+|...=+.+.+.+-+...+ +..| ++++ ++..+|.+...||+|+.-+.+.--+| +
T Consensus 18 ~~~~Eal~~silGvL~l~~lL~~~l~~id~-im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIP-L 95 (142)
T COG2426 18 LSPLEALLLSILGVLPLSLLLPLLLDPIDR-IMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIP-L 95 (142)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeecc-C
Confidence 678888889888876666666665555432 1111 1111 12223334457889998777666666 5
Q ss_pred Ch---hhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHh
Q 031771 83 PF---NMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 121 (153)
Q Consensus 83 p~---~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~ 121 (153)
|- .--+.++-..+++.++-+.+..+|......+.+..+.
T Consensus 96 P~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s~ 137 (142)
T COG2426 96 PGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPSI 137 (142)
T ss_pred CCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhcc
Confidence 52 2345666778889888888888888777776665543
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=78.84 E-value=11 Score=22.25 Aligned_cols=11 Identities=0% Similarity=0.308 Sum_probs=6.0
Q ss_pred hHHHHHHHHHh
Q 031771 56 PQFRSVALAIQ 66 (153)
Q Consensus 56 ~~~~~~~~~~~ 66 (153)
++.++.++..+
T Consensus 55 k~l~~le~e~~ 65 (68)
T PF06305_consen 55 KELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 24
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=74.51 E-value=12 Score=28.06 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcchhH-------hhHHHhhcCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhh
Q 031771 57 QFRSVALAIQRSGFK-------IVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 124 (153)
Q Consensus 57 ~~~~~~~~~~~~g~~-------~~~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~ 124 (153)
+.+.++++++++|.+ ...+.+..|++|..+.+.+.|..==++.- .+.+.+|....+.+..+++..++
T Consensus 34 ~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G-~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 34 DPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLG-FLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred CHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677776633 33467888999988888887765333333 44566788888888888877664
No 25
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=74.46 E-value=39 Score=26.83 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhhHHHhhcC----CCChhhHHHHh
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVP----LLPFNMLNYLL 91 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~P----~~p~~~~~~~a 91 (153)
..-|.|..+.++=+...-.+-+.+|++.-++.-+ +.....+-.+.+||+=.+++.+--.+| +.| .+.++-.
T Consensus 195 ~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~----~~~~mS~~T~~lq~qL~~AL~vQT~IPi~vsf~P-c~~~wy~ 269 (310)
T PF10319_consen 195 FRSWIGIIILTIISSYSIILYFVLGYKIMKKLNK----MSSTMSKKTKRLQRQLFKALIVQTVIPICVSFSP-CVLSWYG 269 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----chhhhCHhHHHHHHHHHHHHHHHHHhHHHHhhcc-HHHHHhH
Confidence 3457777777777777788888888876543211 112222223334455555555554444 345 5666666
Q ss_pred hcCCCCh---hHHHHHHHHhHHH
Q 031771 92 SVTPVPL---LEYMLASWIGMMP 111 (153)
Q Consensus 92 G~~~~~~---~~f~~~~~lg~~~ 111 (153)
.+.++++ -.+.-..+++..|
T Consensus 270 pif~i~~~~~~n~~~~iAls~FP 292 (310)
T PF10319_consen 270 PIFGIDLGRWNNYFSVIALSAFP 292 (310)
T ss_pred HHHcCChhHHHHHHHHHHHHHcc
Confidence 6666655 3444444444443
No 26
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.42 E-value=13 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh
Q 031771 20 VGFVADSIGATIGAGAAFLLGRTIGK 45 (153)
Q Consensus 20 ~~~~~~~~g~~lG~~~~y~igr~~g~ 45 (153)
..+..+.+|-++|-.++|.+.|...+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34567788899999999999997654
No 27
>COG1238 Predicted membrane protein [Function unknown]
Probab=72.91 E-value=24 Score=25.16 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHhcchhHhhHHHh-----hcCCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhccccc
Q 031771 64 AIQRSGFKIVLLLR-----LVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 129 (153)
Q Consensus 64 ~~~~~g~~~~~~~r-----~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~ 129 (153)
..++++...+++.- +.| +|.++.-...-+.+.+.+.+...+++|+.....+--++|+...+..+.
T Consensus 13 ~~~~~a~~~Lf~vaF~eat~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 13 MSQAYAYAGLFIVAFLEATLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 34556655554443 457 666888888888889999999999999999999999999988765543
No 28
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=71.80 E-value=41 Score=26.81 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhhHHHhhcCCCC---hhhHHHHhhcCCCChhHHHH
Q 031771 27 IGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNMLNYLLSVTPVPLLEYML 103 (153)
Q Consensus 27 ~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~P~~p---~~~~~~~aG~~~~~~~~f~~ 103 (153)
+.+.+|+.+.|.++-++++.... .++++|++++|-....+++.-+=-++. ..+++......++|+..-++
T Consensus 42 v~~ligai~~~li~~~~~~~~~~-------~~~~le~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii 114 (356)
T COG4956 42 VDALIGAIIFFLISFWFGKYVLN-------WLKRLEEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTII 114 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHH
Confidence 44577888888888777643222 344555666665443333221100011 01222223344455433333
Q ss_pred HHHHhHHHHHHHHHHHHhhhh
Q 031771 104 ASWIGMMPITLALVYVGTTLK 124 (153)
Q Consensus 104 ~~~lg~~~~~~~~~~~G~~~~ 124 (153)
.+.-+.+.+|+|..++
T Consensus 115 -----~vi~t~il~y~G~~~~ 130 (356)
T COG4956 115 -----PVILTIILAYFGFQLA 130 (356)
T ss_pred -----HHHHHHHHHHHhhHHh
Confidence 3344566677777654
No 29
>COG4035 Predicted membrane protein [Function unknown]
Probab=69.34 E-value=15 Score=23.75 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhChHHHHHhhcC---chHHHHHHHHHhcchhHhhHHHhhcCCCChhh--------HHHHhhcC-CCC
Q 031771 30 TIGAGAAFLLGRTIGKPFVISKLKD---YPQFRSVALAIQRSGFKIVLLLRLVPLLPFNM--------LNYLLSVT-PVP 97 (153)
Q Consensus 30 ~lG~~~~y~igr~~g~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~r~~P~~p~~~--------~~~~aG~~-~~~ 97 (153)
..|+...|.+|...|-+...|+.++ +++.+.+.-.+.--|+..+.-+-..| +| +. +.+.+|+- +..
T Consensus 10 la~av~~Fi~Gs~iGLeySYRkY~epfve~~iDp~aL~iaV~GwtiL~ns~~~~-v~-~~~~~ag~flig~v~gMRPGYG 87 (108)
T COG4035 10 LAGAVILFIIGSFIGLEYSYRKYSEPFVEKGIDPFALAIAVFGWTILINSWMRS-VP-VPLYMAGCFLIGFVLGMRPGYG 87 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhccchHhhcCCChHHHHHHHhcceeeeeecccC-Cc-hHHHHHHHHHHHHhhccCCCCc
Confidence 3445555556655555444433332 23444444455556665555554444 44 21 12222321 133
Q ss_pred hhHHHHHHHHhHHHHH
Q 031771 98 LLEYMLASWIGMMPIT 113 (153)
Q Consensus 98 ~~~f~~~~~lg~~~~~ 113 (153)
...+..+++++.+.|.
T Consensus 88 R~Etv~Gt~LA~l~wL 103 (108)
T COG4035 88 RVETVVGTFLAVLLWL 103 (108)
T ss_pred eeehhHHHHHHHHHHH
Confidence 4556666666666654
No 30
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.52 E-value=32 Score=22.97 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhChHHHHHhhcCc----hHHHHHHHHHhcch
Q 031771 31 IGAGAAFLLGRTIGKPFVISKLKDY----PQFRSVALAIQRSG 69 (153)
Q Consensus 31 lG~~~~y~igr~~g~~~~~~~~~~~----~~~~~~~~~~~~~g 69 (153)
.|+.++..++=.+|.+++.+ +|+. =-++++|.+.++++
T Consensus 53 ~~~lig~~l~v~~gg~~l~r-lKRGrPe~yl~r~l~~~~~~~~ 94 (111)
T TIGR03750 53 TGALLGPILVVLIGGKLLAR-LKRGKPEGYLYRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHcCCCchHHHHHHHHHHHHcC
Confidence 44445555555555554543 3321 13556666666665
No 31
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=67.96 E-value=8.4 Score=27.05 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=23.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 031771 4 LESSFQLGGGYLFGLPVGFVADSIGATIGAGA 35 (153)
Q Consensus 4 P~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~ 35 (153)
|..+..+.+|+++|++.|.+...+...++...
T Consensus 30 ~~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 30 FSFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999998888766666554
No 32
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=64.29 E-value=42 Score=22.74 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhChHHHHHhhcC-c-h--HHHHHHHHHhcch
Q 031771 32 GAGAAFLLGRTIGKPFVISKLKD-Y-P--QFRSVALAIQRSG 69 (153)
Q Consensus 32 G~~~~y~igr~~g~~~~~~~~~~-~-~--~~~~~~~~~~~~g 69 (153)
+..++..++=.++..++.+ +++ + + -.+++|..+++++
T Consensus 57 ~~ll~~~~~v~~gg~~l~r-lKRGKP~~yl~r~l~~~l~~~g 97 (121)
T PF11990_consen 57 GALLGPILGVFVGGKLLAR-LKRGKPEGYLYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHHhHHHHHH-HHcCCchhHHHHHHHHHHHHhc
Confidence 4455555555555555553 332 1 1 3556666676665
No 33
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=64.02 E-value=19 Score=26.56 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=45.1
Q ss_pred HHHhcchhH-hhHHHhhcCCCChhhHHHHh--hcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhcccc
Q 031771 63 LAIQRSGFK-IVLLLRLVPLLPFNMLNYLL--SVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSD 128 (153)
Q Consensus 63 ~~~~~~g~~-~~~~~r~~P~~p~~~~~~~a--G~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~ 128 (153)
+|++++.+. .+.++.++| -| ..++.+. |.-.-.+.--+++.....+|...+...+.....+..+
T Consensus 41 ~Wis~~ef~~~laisq~lP-GP-~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~ 107 (195)
T COG2059 41 KWISEEEFADALAISQLLP-GP-IATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGD 107 (195)
T ss_pred cCCCHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 566555544 567899999 47 5555544 6655667777788888888998888888877766554
No 34
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=62.70 E-value=21 Score=25.18 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=19.3
Q ss_pred chH-HHHHHHHhhhhhHHHHHHHHHHH
Q 031771 4 LES-SFQLGGGYLFGLPVGFVADSIGA 29 (153)
Q Consensus 4 P~~-~~~~~~G~lfg~~~~~~~~~~g~ 29 (153)
|-+ .+.+.+|.+.|||++...+++-+
T Consensus 29 P~QH~iNviaaVlLGP~ya~~~Af~~s 55 (150)
T PF09512_consen 29 PMQHMINVIAAVLLGPWYAVAMAFITS 55 (150)
T ss_pred hHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 554 78899999999998776655433
No 35
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=59.18 E-value=48 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhcchh
Q 031771 56 PQFRSVALAIQRSGF 70 (153)
Q Consensus 56 ~~~~~~~~~~~~~g~ 70 (153)
...+++.+.+++++-
T Consensus 66 ~~~d~v~~~l~~~gg 80 (102)
T PF06897_consen 66 ATEDKVDAALRKFGG 80 (102)
T ss_pred CCHHHHHHHHHhcCC
Confidence 466777888888773
No 36
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=57.43 E-value=18 Score=30.16 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 031771 6 SSFQLGGGYLFGLPVGFVADSIGATIG 32 (153)
Q Consensus 6 ~~~~~~~G~lfg~~~~~~~~~~g~~lG 32 (153)
-+....+|++|||+.|.+...++..+|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356788999999999999999999888
No 37
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=57.07 E-value=6.4 Score=32.04 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhCh------HHHHHhhc---------CchHHHHHHHHH----hcchhHhhHHHhhcC-CCChh
Q 031771 26 SIGATIGAGAAFLLGRTIGK------PFVISKLK---------DYPQFRSVALAI----QRSGFKIVLLLRLVP-LLPFN 85 (153)
Q Consensus 26 ~~g~~lG~~~~y~igr~~g~------~~~~~~~~---------~~~~~~~~~~~~----~~~g~~~~~~~r~~P-~~p~~ 85 (153)
-.|+.+|..-.|+..|..-- +-..+.+. ..++.+|.+.|+ +|-|+..++++--+| ... |
T Consensus 216 g~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlf-d 294 (440)
T KOG1109|consen 216 GAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLF-D 294 (440)
T ss_pred ccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcch-h
Confidence 36788999999999996421 10000000 012344555554 445788888888887 444 8
Q ss_pred hHHHHhhcCCCChhHHHHHHHHhHHHH
Q 031771 86 MLNYLLSVTPVPLLEYMLASWIGMMPI 112 (153)
Q Consensus 86 ~~~~~aG~~~~~~~~f~~~~~lg~~~~ 112 (153)
..-.-+|..-.|+|.|+.+|++|...-
T Consensus 295 laGitcghflvpfw~ffGaTLigKaii 321 (440)
T KOG1109|consen 295 LAGITCGHFLVPFWTFFGATLIGKAII 321 (440)
T ss_pred hcccccccccchHHHHhhHHHHHHHHH
Confidence 888889999999999999999998543
No 38
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=56.29 E-value=36 Score=19.35 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIG 44 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g 44 (153)
+|+|..+++..+ ..++|.+|++..
T Consensus 27 ~GF~~tl~i~~~-----~~iG~~iG~~~d 50 (51)
T PF10031_consen 27 FGFWKTLFILLF-----AAIGYYIGKYLD 50 (51)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 455555444332 345667776653
No 39
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.97 E-value=40 Score=19.76 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=9.8
Q ss_pred chHHHHHHHHHhcc
Q 031771 55 YPQFRSVALAIQRS 68 (153)
Q Consensus 55 ~~~~~~~~~~~~~~ 68 (153)
++|++|+-+.++|+
T Consensus 45 eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 45 EQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHHHHHHccC
Confidence 36777777777764
No 40
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=54.93 E-value=56 Score=25.25 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=54.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhhHHHhhcCC---CChhhHHHH
Q 031771 14 YLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL---LPFNMLNYL 90 (153)
Q Consensus 14 ~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~P~---~p~~~~~~~ 90 (153)
..+|+..-+++..+-...-....+..|++.|++.+++. +...++++.+..+-=|... ++-+++- +. ....+.
T Consensus 131 n~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l--~~~~~~~i~~~asilGl~v--vGal~as~V~v~-~~l~~~ 205 (264)
T PF03613_consen 131 NILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL--QSGLLQKITEAASILGLMV--VGALIASYVNVS-TPLTIT 205 (264)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHH--HHHHHHHeEEEe-eeEEEe
Confidence 33566665555555567777888999999999988865 3467777766655444332 2333221 22 233344
Q ss_pred hhcCCCChhHHHHHHHHhHHHHH
Q 031771 91 LSVTPVPLLEYMLASWIGMMPIT 113 (153)
Q Consensus 91 aG~~~~~~~~f~~~~~lg~~~~~ 113 (153)
.|-..++.-..+=..+-+.+|-.
T Consensus 206 ~g~~~~~lQ~~lD~I~P~lLpl~ 228 (264)
T PF03613_consen 206 IGGVTISLQEILDGIMPGLLPLL 228 (264)
T ss_pred cCCceeeHHHhHHhHHhhHHHHH
Confidence 45555666665444444444433
No 41
>PLN02953 phosphatidate cytidylyltransferase
Probab=52.79 E-value=9 Score=31.34 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcC
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKPFVISKLKD 54 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~ 54 (153)
+++..+.....|..+|+.||.+||+.+. .+..
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~-~ISP 302 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT-SISP 302 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC-cCCC
Confidence 4456677888999999999999987664 3443
No 42
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=52.70 E-value=57 Score=20.94 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhH
Q 031771 20 VGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFK 71 (153)
Q Consensus 20 ~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (153)
+-..+..+|+-.-..++|-+...-..+-..+.+. +.++..++.++++|..
T Consensus 41 P~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~--~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 41 PFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQ--KEIKEAKADLRKKGVD 90 (91)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHH--HHHHHHHHHHHHcCCC
Confidence 4445566666666666666666544443333333 4677777888888753
No 43
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=52.58 E-value=1.1e+02 Score=23.73 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=65.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHhhcC---chH-------HHHHHHHHhcchhHhhHHHhhcC
Q 031771 13 GYLFGLPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKLKD---YPQ-------FRSVALAIQRSGFKIVLLLRLVP 80 (153)
Q Consensus 13 G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~--g~~~~~~~~~~---~~~-------~~~~~~~~~~~g~~~~~~~r~~P 80 (153)
........+...+.++..+|-..+|.+.|+- ||+.++....- -+. +.-....-...+++.++++-..-
T Consensus 66 a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~~ 145 (267)
T COG1177 66 ALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIVF 145 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 3445667788888999999999999999972 22223211110 011 11111111456889999999888
Q ss_pred CCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHH
Q 031771 81 LLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITL 114 (153)
Q Consensus 81 ~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~ 114 (153)
-+|+.+....+.+.+++..-=-.+--+|.-+|..
T Consensus 146 ~lP~v~~~v~a~l~~~d~~LeeAA~dLGAs~~~~ 179 (267)
T COG1177 146 ALPFVVVVVSARLQGFDRSLEEAARDLGASPWQT 179 (267)
T ss_pred HhhHHHHHHHHHHHhCChHHHHHHHHcCCCHHHH
Confidence 8999999999999888875544555555544443
No 44
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=50.01 E-value=72 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031771 17 GLPVGFVADSIGATIGAGAAFLLGRT 42 (153)
Q Consensus 17 g~~~~~~~~~~g~~lG~~~~y~igr~ 42 (153)
++|.+.++......+.+.+.++.+++
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~ 95 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRR 95 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666664
No 45
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=49.72 E-value=59 Score=22.04 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
-..+.+++.+|-.++|++-|++.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666788888888889988887654
No 46
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=49.63 E-value=1.1e+02 Score=23.06 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhcc--------hhHhhHHHhhcCCCChhhHHHHhhcCC
Q 031771 55 YPQFRSVALAIQRS--------GFKIVLLLRLVPLLPFNMLNYLLSVTP 95 (153)
Q Consensus 55 ~~~~~~~~~~~~~~--------g~~~~~~~r~~P~~p~~~~~~~aG~~~ 95 (153)
+++++++-++++|+ ++.+..+..+.-..- -.-+.-.|+++
T Consensus 76 ek~in~~g~~~~~~~~~~~f~e~fVta~lLfcig~m~-I~G~l~~GltG 123 (228)
T COG1811 76 EKRINNLGQKLEDKPGHGSFAEGFVTAILLFCIGSMG-ILGSLNEGLTG 123 (228)
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHhcccc-hhhHHHHhhcC
Confidence 35667777777763 555555555554344 55666677766
No 47
>PRK03072 heat shock protein HtpX; Provisional
Probab=48.90 E-value=63 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 8 FQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 8 ~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
+.++.|+++| ..+++.+.+-+.....++|+.+.+.
T Consensus 20 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~ 54 (288)
T PRK03072 20 LIVFIGALFG-RTGLGIAVLIAVGMNAYVYWNSDKL 54 (288)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444566665 3455555555666667777777654
No 48
>COG4720 Predicted membrane protein [Function unknown]
Probab=48.90 E-value=62 Score=23.49 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031771 6 SSFQLGGGYLFGLPVGFVADSIGATIGAGAAFL 38 (153)
Q Consensus 6 ~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~ 38 (153)
+.+..++.++||+..|.++..+|..+=|.++++
T Consensus 41 da~i~las~lfGs~~G~lvg~iG~al~Dll~gy 73 (177)
T COG4720 41 DAGIALASFLFGSRAGALVGGLGHALKDLLSGY 73 (177)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCC
Confidence 567888889999999999999999998888743
No 49
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=48.12 E-value=51 Score=23.23 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhChH
Q 031771 24 ADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
.+.++..+|-.++|++.|+..++
T Consensus 105 ~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 105 AALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777778888888876544
No 50
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.93 E-value=91 Score=22.41 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-hHHHHH-----hhcC-----chHHHHHHHHHhcchhHhhHHHhhc
Q 031771 24 ADSIGATIGAGAAFLLGRTIG-KPFVIS-----KLKD-----YPQFRSVALAIQRSGFKIVLLLRLV 79 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~g-~~~~~~-----~~~~-----~~~~~~~~~~~~~~g~~~~~~~r~~ 79 (153)
.+.+|.++|..++-++-+++. +|+..+ ++++ ++|++++++..+++...++.+.||-
T Consensus 51 ~NllGVil~~~~~~~~l~~~k~~p~m~Ev~YvW~LKq~ln~I~rkl~~ik~aa~~~d~~Al~iL~FY 117 (165)
T PF11286_consen 51 WNLLGVILGLLLTSALLRQLKTHPFMTEVYYVWQLKQLLNKIYRKLHKIKAAAEQGDPDALKILRFY 117 (165)
T ss_pred eeHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345777888887777777664 344432 1221 3678888888888888888887774
No 51
>PLN02594 phosphatidate cytidylyltransferase
Probab=46.57 E-value=18 Score=29.02 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHH
Q 031771 26 SIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 59 (153)
Q Consensus 26 ~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~ 59 (153)
..-....|..+|..||.+||..+. ++..++.+|
T Consensus 131 ~~lV~~nDi~AY~~G~~fGk~kL~-~iSPkKTwE 163 (342)
T PLN02594 131 ASLIVINDIAAYLFGFFFGRTPLI-KLSPKKTWE 163 (342)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCCC-ccCCCCchh
Confidence 445778999999999999997655 344334444
No 52
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=46.28 E-value=16 Score=20.25 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=13.8
Q ss_pred chHHHHHHHHHhcchhHh
Q 031771 55 YPQFRSVALAIQRSGFKI 72 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~ 72 (153)
..++++++.+++++|++.
T Consensus 26 ~~~L~k~~~wld~rgWwY 43 (45)
T PF12123_consen 26 DAELDKFTAWLDERGWWY 43 (45)
T ss_dssp HHHHHHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHHhcCcEE
Confidence 468999999999999863
No 53
>PRK11677 hypothetical protein; Provisional
Probab=45.63 E-value=60 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031771 18 LPVGFVADSIGATIGAGAAFLLGRTIG 44 (153)
Q Consensus 18 ~~~~~~~~~~g~~lG~~~~y~igr~~g 44 (153)
+..+++..++|.++|..++.+..+...
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~ 29 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLR 29 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 455667778899999999998877653
No 54
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=45.57 E-value=78 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 031771 23 VADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 23 ~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
.+..++.++|...+|++.|++.|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999988654
No 55
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=44.44 E-value=36 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 18 LPVGFVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 18 ~~~~~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
+.....++++....||.++=.+||++||+
T Consensus 112 ~~~~~~~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 112 PIEVAIAGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred cHHHHHHHHHHHHHhhHHHHHhCcccCcc
Confidence 33777788888999999999999999986
No 56
>PRK12996 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=42.12 E-value=65 Score=27.04 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.9
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHhChH
Q 031771 3 YLESSFQLGGGYLFGLPVGFVADSIG-----------------ATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 3 ~P~~~~~~~~G~lfg~~~~~~~~~~g-----------------~~lG~~~~y~igr~~g~~ 46 (153)
+|+..+.+.+|.+.|.+++..-+..= ..+|..++.++|+++|++
T Consensus 145 ~~~~~~Ii~g~l~lG~y~~v~pal~~~~~~kiTg~d~~aiGH~~~~g~~~s~~ig~~~G~k 205 (463)
T PRK12996 145 FEGVGLVFTGSLILGLVMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKG 205 (463)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCeEEEehhhHHHHHHHHHHHHhCCC
Confidence 45566777888888877666544432 467888888888888864
No 57
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=40.79 E-value=25 Score=17.11 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=10.2
Q ss_pred CccchHHHHHHHHh
Q 031771 1 MWYLESSFQLGGGY 14 (153)
Q Consensus 1 ~p~P~~~~~~~~G~ 14 (153)
.|+|+...++.+|.
T Consensus 1 VPlPA~~~LLl~gL 14 (26)
T TIGR03370 1 VPLPAGALLLLAGL 14 (26)
T ss_pred CCCcchHHHHHHHH
Confidence 37888877777665
No 58
>COG4732 Predicted membrane protein [Function unknown]
Probab=40.31 E-value=54 Score=23.33 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=22.2
Q ss_pred cchH-HHHHHHHhhhhhHHHHHHHHHHHHH
Q 031771 3 YLES-SFQLGGGYLFGLPVGFVADSIGATI 31 (153)
Q Consensus 3 ~P~~-~~~~~~G~lfg~~~~~~~~~~g~~l 31 (153)
.|.+ .+.+++|...|+|++...+.+-+.+
T Consensus 37 aP~qh~VNvlAgV~~GPwyala~A~~~sli 66 (177)
T COG4732 37 APMQHFVNVLAGVMMGPWYALAMALVTSLI 66 (177)
T ss_pred CcHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3554 7899999999999988777665543
No 59
>PRK14407 membrane protein; Provisional
Probab=39.02 E-value=72 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhChHHHHH
Q 031771 20 VGFVADSIGATIGA-GAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 20 ~~~~~~~~g~~lG~-~~~y~igr~~g~~~~~~ 50 (153)
.+.+...++-.+|+ ..+|+++|...+.-+++
T Consensus 6 ~~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~ 37 (219)
T PRK14407 6 AGAVGLAIAYLLGSTPTGYLAGKLLKGIDIRE 37 (219)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhCCCCCCc
Confidence 34555667888888 78899999864333443
No 60
>PRK04897 heat shock protein HtpX; Provisional
Probab=39.00 E-value=98 Score=24.18 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 20 VGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 20 ~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
.+.+++.+.......+.|+.+.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~ 64 (298)
T PRK04897 41 GGLIIALIIGVIYALIMIFQSTNV 64 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455666666777778888877665
No 61
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=38.72 E-value=1.5e+02 Score=22.99 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcch
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 69 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g 69 (153)
+|+..-+++..+-...-....+..|++.|.+.++ .++ .++.+++.+...-=|
T Consensus 135 lGpil~~v~~~~~~~~~~~~~~~~GY~~G~~~i~-~l~-~~~~~~it~~a~ilG 186 (271)
T TIGR00828 135 LGPLLFFFLFNLVRLATRYYGLHYGYSKGVKIVD-DMG-GNNLQKLTEGASILG 186 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHh-ccHHHHHHHHHHHHH
Confidence 5555444444444555677788888999988884 444 345666655544333
No 62
>PRK03001 M48 family peptidase; Provisional
Probab=38.62 E-value=78 Score=24.44 Aligned_cols=39 Identities=10% Similarity=-0.033 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 8 FQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 8 ~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
+.++.|++++-..+++..++....-..+.|+++-+.-.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 54 (283)
T PRK03001 16 LFIVIGGMIGGSQGMLIALLFALGMNFFSYWFSDKMVLK 54 (283)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344455555544445555555555566667666554333
No 63
>PRK14400 membrane protein; Provisional
Probab=38.49 E-value=1e+02 Score=22.89 Aligned_cols=32 Identities=25% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 20 VGFVADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 20 ~~~~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
.+.++..++-.+|+ ..+|+++|.....-+++.
T Consensus 6 ~~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~ 38 (201)
T PRK14400 6 LGAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTV 38 (201)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCcccc
Confidence 35556677888888 688999998644334433
No 64
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=37.49 E-value=53 Score=20.18 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=15.7
Q ss_pred chHHHHHHHHhhhhhHHHHHHHH
Q 031771 4 LESSFQLGGGYLFGLPVGFVADS 26 (153)
Q Consensus 4 P~~~~~~~~G~lfg~~~~~~~~~ 26 (153)
|.-.+.++.|.++|...|+.+++
T Consensus 56 P~~~lil~l~~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 56 PKRALILALGLFLGLILGIGLAF 78 (82)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776666554
No 65
>PRK11469 hypothetical protein; Provisional
Probab=37.40 E-value=1.6e+02 Score=21.39 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=20.9
Q ss_pred HHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 031771 87 LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 125 (153)
Q Consensus 87 ~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~ 125 (153)
+-..+++.+.|.........+-+..-+..=.++|+.+++
T Consensus 122 vGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~ 160 (188)
T PRK11469 122 VGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS 160 (188)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667766555555555454444444555554443
No 66
>PRK01345 heat shock protein HtpX; Provisional
Probab=37.28 E-value=98 Score=24.48 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 8 FQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 8 ~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
+.++.|++++...++++..+-...-..+.|+.+.+.
T Consensus 16 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (317)
T PRK01345 16 LFMGVGYLIGGAGGMMIALVIAAGMNLFSYWNSDKM 51 (317)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455556554444444333333355666655443
No 67
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=36.73 E-value=69 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKPFV 48 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~~~ 48 (153)
+++++++..+|..++|++.++..+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888887765444
No 68
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=36.45 E-value=1.2e+02 Score=19.56 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 49 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~ 49 (153)
-|...+.....+-+.+|+.++-.+....+|..-+
T Consensus 10 ~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 10 AGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555566677777777777777777777765543
No 69
>PRK10527 hypothetical protein; Provisional
Probab=35.99 E-value=61 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHhChHHHHHhhcCchHHHHHHHHHhcc
Q 031771 36 AFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 68 (153)
Q Consensus 36 ~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~ 68 (153)
+|..+| +.+..++++.+++.+...-+..+++
T Consensus 36 a~cfaR--sSpR~~~WL~~h~~fGp~i~~w~~~ 66 (125)
T PRK10527 36 AWCFAR--SSPRFHAWLLYRSWFGSYLRHWQQH 66 (125)
T ss_pred HHHHHc--CCHHHHHHHHcCchhhHHHHHHHHC
Confidence 455666 5677888887777766655555544
No 70
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.50 E-value=99 Score=21.97 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhh
Q 031771 8 FQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKL 52 (153)
Q Consensus 8 ~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~ 52 (153)
++++.|.++++.++.++..+-+++ +.+++-+++..+.+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~Fl---il~~lL~~~l~kpi~~~l 47 (175)
T PRK14472 6 IILLSGGLLSPNPGLIFWTAVTFV---IVLLILKKIAWGPILSAL 47 (175)
T ss_pred hhhhcCCccCCCHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHH
Confidence 445555677776655433333322 344444444433344333
No 71
>PRK14399 membrane protein; Provisional
Probab=35.40 E-value=1e+02 Score=23.88 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHH
Q 031771 14 YLFGLPVGFVADSIGATIGA-GAAFLLGRTIGKPFVI 49 (153)
Q Consensus 14 ~lfg~~~~~~~~~~g~~lG~-~~~y~igr~~g~~~~~ 49 (153)
+.++.....+...+|-.+|+ ..+|+++|...+.-++
T Consensus 4 ~~~~~l~~il~~iigYLiGSIp~g~ii~k~~~g~DIR 40 (258)
T PRK14399 4 FYMYYLGIILASVFGYFLGSISWSIIIVKKVGNIDIR 40 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCCCcc
Confidence 33333335556667888898 5669999986432344
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.15 E-value=65 Score=21.89 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCh
Q 031771 34 GAAFLLGRTIGK 45 (153)
Q Consensus 34 ~~~y~igr~~g~ 45 (153)
.+.|++.|+-.+
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 667887776544
No 73
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=35.01 E-value=81 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhChH
Q 031771 24 ADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
...+|+++|+..+-++=|+.|.+
T Consensus 93 ll~~gamlGDl~~SFIKRRlgi~ 115 (175)
T PF01864_consen 93 LLGLGAMLGDLPGSFIKRRLGIP 115 (175)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCC
Confidence 35567788888888887777754
No 74
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=34.78 E-value=26 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 20 VGFVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 20 ~~~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
..++.+.=+++-+..++|++||+-||+
T Consensus 67 ESLLFaLQAAiGAgiIgY~lG~~~gr~ 93 (100)
T PRK02898 67 ESLLFALQAALGAGIIGYILGYYKGRS 93 (100)
T ss_pred HHHHHHHHHHHhhhhhheeeeehhhhh
Confidence 455566666666778999999988764
No 75
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=33.15 E-value=1.5e+02 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031771 7 SFQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIG 44 (153)
Q Consensus 7 ~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g 44 (153)
.+...+|..+|.+.-.++..-|.++|..+.+..+....
T Consensus 85 ll~~~g~~~lGl~~il~l~fNG~ivG~~~~~~~~~~~~ 122 (207)
T COG1300 85 LLAIAGGLTLGLPTILVLLFNGFIVGFFVGLVAQKGGL 122 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHhcccH
Confidence 45677888899998888889999999999988554443
No 76
>PRK03982 heat shock protein HtpX; Provisional
Probab=33.02 E-value=1.4e+02 Score=23.16 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 10 LGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 10 ~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
++.|+.++...+.+..++..++...+.|+.+.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 52 (288)
T PRK03982 19 YAIGYLLGGSIGPIIAILLALIPNLISYYYSDKI 52 (288)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444433334444444555566666666554
No 77
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=31.89 E-value=1.5e+02 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 23 VADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 23 ~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
++..++-.+|+ ..+|+++|..++.-+++.
T Consensus 7 l~~i~~YLlGsip~~~ii~k~~~~~DiR~~ 36 (198)
T PRK00220 7 LLILLAYLLGSIPFALLVGKLFGLPDPREH 36 (198)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCChhhc
Confidence 34566788888 688999998754335544
No 78
>PRK14402 membrane protein; Provisional
Probab=31.58 E-value=1.9e+02 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhChHHHHH
Q 031771 20 VGFVADSIGATIGA-GAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 20 ~~~~~~~~g~~lG~-~~~y~igr~~g~~~~~~ 50 (153)
...+...++-.+|+ ..+|+++|..+.| +++
T Consensus 4 ~~~l~~~~~YllGsip~~~~v~k~~g~D-iR~ 34 (198)
T PRK14402 4 TAVLALLLAYLFGSIPAGAWVARTRGVD-IRK 34 (198)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCC-hhh
Confidence 34555666777887 6789999976655 443
No 79
>PRK14219 camphor resistance protein CrcB; Provisional
Probab=31.47 E-value=1.2e+02 Score=20.77 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
.....+.+.+++.++.++|...++.
T Consensus 98 a~~y~~~sl~~gl~a~~lG~~l~~~ 122 (132)
T PRK14219 98 AFLYVSCSILGGLIMSGLGYTLGDF 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666665543
No 80
>PRK14419 membrane protein; Provisional
Probab=29.61 E-value=2e+02 Score=21.23 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 22 FVADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 22 ~~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
+++..++-.+|+ ..+|+++|...+.-+++.
T Consensus 5 ~l~~l~~YllGsip~~~~i~k~~~~~DiR~~ 35 (199)
T PRK14419 5 LLIILLAYLLGSFPSGYLAGRWLKGIDLREI 35 (199)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCChhhc
Confidence 445566778888 788999998744345543
No 81
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=29.46 E-value=1.6e+02 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 23 VADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 23 ~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
+...+|-.+|+ ..+|+++|...+.-+++.
T Consensus 7 l~~~~~YLlGSip~~~~i~k~~~g~DiR~~ 36 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKILKGIDIREH 36 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCchhc
Confidence 34456777787 678999998654335443
No 82
>PRK14413 membrane protein; Provisional
Probab=29.31 E-value=1.4e+02 Score=22.01 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=18.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
...+|-.+|+ ..+|+++|...++.+++.
T Consensus 6 ~~l~~Yl~Gsip~~~ii~k~~~g~DiR~~ 34 (197)
T PRK14413 6 TSVISFLLGSIPTGYFITKKLCGIDIRTK 34 (197)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCcccc
Confidence 4456777887 678999998644335443
No 83
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=28.98 E-value=4.5e+02 Score=23.99 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.3
Q ss_pred CccchHHHHHHHHhhhhhHHH------------HHHHHHHHHHHHHHHHHHHHHhChHHHHHhh
Q 031771 1 MWYLESSFQLGGGYLFGLPVG------------FVADSIGATIGAGAAFLLGRTIGKPFVISKL 52 (153)
Q Consensus 1 ~p~P~~~~~~~~G~lfg~~~~------------~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~ 52 (153)
+|+|..++.+++|.++|+... .+..-+.-+.=+...|-.|.....+.+++.+
T Consensus 36 l~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~w 99 (810)
T TIGR00844 36 LYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHW 99 (810)
T ss_pred cCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhH
Confidence 588999999999999887421 1111133445567778888887776665543
No 84
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=28.92 E-value=1.5e+02 Score=18.52 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=10.4
Q ss_pred HHHHHHHH---HHHHHhChHHHH
Q 031771 30 TIGAGAAF---LLGRTIGKPFVI 49 (153)
Q Consensus 30 ~lG~~~~y---~igr~~g~~~~~ 49 (153)
.+|+.++| -+|++.|++.++
T Consensus 11 ~lgG~IA~~GD~iG~kvGKkrls 33 (79)
T PF11283_consen 11 LLGGLIAYLGDRIGSKVGKKRLS 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhh
Confidence 34444444 356666665554
No 85
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.29 E-value=93 Score=19.85 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchh
Q 031771 19 PVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGF 70 (153)
Q Consensus 19 ~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 70 (153)
++-.++..+|+-.+..+.|-.+..-..+-....+. ++++..++.++|+|.
T Consensus 44 ~P~~~~l~~G~Ya~~tv~Y~VATfnDc~eA~veL~--~~IkEAr~~L~rkg~ 93 (95)
T KOG4841|consen 44 WPLYLLLSAGCYALGTVGYRVATFNDCEEAAVELQ--SQIKEARADLARKGL 93 (95)
T ss_pred hHHHHHHHHHhHhhhhheeeeeccCCcHHHHHHHH--HHHHHHHHHHHHccC
Confidence 44566777888888888887777654443332222 466677777877764
No 86
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=27.22 E-value=1.4e+02 Score=17.44 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=23.5
Q ss_pred HHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhcc
Q 031771 87 LNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDL 126 (153)
Q Consensus 87 ~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~ 126 (153)
+....|+.+++.++-+.... -.-..+.+...+|..+++.
T Consensus 8 vg~~~g~~~~~~~~~~~~~~-~ig~~~~~~~~~G~~~G~~ 46 (67)
T PF02659_consen 8 VGISYGLRGISRRIILLIAL-IIGIFQFIMPLLGLLLGRR 46 (67)
T ss_pred HHHHHHHHcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 55667888888544333332 2445566666777776654
No 87
>PRK14418 membrane protein; Provisional
Probab=27.10 E-value=1.7e+02 Score=22.30 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHH
Q 031771 17 GLPVGFVADSIGATIGA-GAAFLLGRTIGKPFVI 49 (153)
Q Consensus 17 g~~~~~~~~~~g~~lG~-~~~y~igr~~g~~~~~ 49 (153)
....-.++..+|-.+|+ ..+|+++|.+.+.-++
T Consensus 6 ~~~~~i~~~l~~YLlGSIp~g~ii~k~~~g~DiR 39 (236)
T PRK14418 6 SILINLALFLLGYLIGSINFSIIVSKRFKKDDIR 39 (236)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC
Confidence 33344455677888888 6889999986432344
No 88
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=26.96 E-value=1.3e+02 Score=18.42 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=16.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 031771 13 GYLFGLPVGFVADSIGATIGAG 34 (153)
Q Consensus 13 G~lfg~~~~~~~~~~g~~lG~~ 34 (153)
|.++|...|++++.+-..+++.
T Consensus 51 GILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 51 GILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887777666654
No 89
>PRK14410 membrane protein; Provisional
Probab=26.90 E-value=1.7e+02 Score=22.28 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
+..+|-.+|+ ..+|+++|.+.+.-+++.
T Consensus 7 ~~l~~YLlGSIp~g~ii~k~~~g~DiR~~ 35 (235)
T PRK14410 7 ILAVSYLIGSIPTSIIAGKLLKGIDIRNF 35 (235)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcccc
Confidence 3455777777 578999998644334433
No 90
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=26.36 E-value=71 Score=19.78 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=16.6
Q ss_pred chHHHHHHHHHhcchhHhhHH
Q 031771 55 YPQFRSVALAIQRSGFKIVLL 75 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~ 75 (153)
.+.++|.|+|.=||..+.+..
T Consensus 26 ~~hl~rvE~WilrNp~~al~a 46 (75)
T PF01004_consen 26 WKHLTRVESWILRNPGYALAA 46 (75)
T ss_pred HHHHHHHHHHHhcCchHHHHH
Confidence 368999999998887776653
No 91
>PRK14395 membrane protein; Provisional
Probab=26.16 E-value=2.4e+02 Score=20.73 Aligned_cols=22 Identities=32% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHHHHHH-HHHHHHHHHhChH
Q 031771 25 DSIGATIGA-GAAFLLGRTIGKP 46 (153)
Q Consensus 25 ~~~g~~lG~-~~~y~igr~~g~~ 46 (153)
..+|-.+|+ ..+|+++|..+.|
T Consensus 7 ~i~~YLlGSIp~~~ii~k~~g~D 29 (195)
T PRK14395 7 FIIAYLLGAIPFAYWAGRYKGMD 29 (195)
T ss_pred HHHHHHHHhhhHHHHHHHHcCCC
Confidence 466788888 6889999976655
No 92
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=25.97 E-value=3.8e+02 Score=23.34 Aligned_cols=87 Identities=14% Similarity=0.252 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh----Ch------HHHHHhhc---------CchHHHHHHHHHhcchhHhhHHHhhcCCCCh
Q 031771 24 ADSIGATIGAGAAFLLGRTI----GK------PFVISKLK---------DYPQFRSVALAIQRSGFKIVLLLRLVPLLPF 84 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~----g~------~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~r~~P~~p~ 84 (153)
....|.++|+.+.|+++-.- || +.++|.++ .++.+.|..+...|...+-..+--++|.+--
T Consensus 522 ~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T~aAl~eMi~P~llavl~P 601 (703)
T COG3808 522 YVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVDILTKAALKEMIIPGLLAVLAP 601 (703)
T ss_pred HHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 35678888888888876542 22 11222222 1345666666666666555554444442221
Q ss_pred hhHHHHhhcCCCChhHHHHHHHHhHHHHHHHH
Q 031771 85 NMLNYLLSVTPVPLLEYMLASWIGMMPITLAL 116 (153)
Q Consensus 85 ~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~ 116 (153)
-++-+.+| +..+-+.++|.+..-+..
T Consensus 602 lvvgli~G------~~aLgg~L~G~iv~G~~~ 627 (703)
T COG3808 602 LVVGLILG------FAALGGLLLGVIVNGLFV 627 (703)
T ss_pred HHHHHHhh------HHHHHHHHHHHHHHhHHH
Confidence 33334444 667777777766554443
No 93
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=25.69 E-value=2.1e+02 Score=19.12 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhChH
Q 031771 7 SFQLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 7 ~~~~~~G~lfg~~~~~~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
.+.+..|-.+|.++.++.....+.+|..+.-.-|++.-++
T Consensus 13 ~~~i~v~~~iG~~~tll~vi~t~~lG~~llr~~g~~~~~~ 52 (119)
T PF04186_consen 13 AVLILVGSWIGFLWTLLLVILTAVLGIWLLRRQGRRALRR 52 (119)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888888888888888887766666655443
No 94
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=25.45 E-value=66 Score=21.32 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 031771 27 IGATIGAGAAFLLGRTIG 44 (153)
Q Consensus 27 ~g~~lG~~~~y~igr~~g 44 (153)
+.+++|+.++|++.+...
T Consensus 110 ~~n~~G~~lG~~l~~~~~ 127 (133)
T PF04892_consen 110 LANTLGALLGYLLYRLIR 127 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666655543
No 95
>PRK14404 membrane protein; Provisional
Probab=25.22 E-value=1.7e+02 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhChHH
Q 031771 23 VADSIGATIGA-GAAFLLGRTIGKPF 47 (153)
Q Consensus 23 ~~~~~g~~lG~-~~~y~igr~~g~~~ 47 (153)
++..++-.+|+ ..+|+++|..+.|.
T Consensus 4 l~~i~~YL~GSip~g~~i~k~~g~Di 29 (201)
T PRK14404 4 LIILLQFLSGSLMFSYWIGKIVGKDL 29 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHhCCCc
Confidence 44566778888 68899999877653
No 96
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=25.12 E-value=25 Score=25.80 Aligned_cols=27 Identities=26% Similarity=0.617 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHH
Q 031771 23 VADSIGATIGAGAAFLLGRTIGKPFVI 49 (153)
Q Consensus 23 ~~~~~g~~lG~~~~y~igr~~g~~~~~ 49 (153)
.++-+|++.|....|.+||.+.|+...
T Consensus 91 ~aAgagAv~g~~~GY~lG~~m~rp~~~ 117 (217)
T smart00157 91 GAAAAGAVVGGLGGYMLGSAMSRPLIH 117 (217)
T ss_pred HhhhcchhhhhccccccccccCCCccc
Confidence 355678889999999999988776553
No 97
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=25.02 E-value=1.4e+02 Score=17.84 Aligned_cols=41 Identities=15% Similarity=0.489 Sum_probs=33.9
Q ss_pred hhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhh
Q 031771 84 FNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 124 (153)
Q Consensus 84 ~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~ 124 (153)
+|++.+.+|+.-++.-.|..-...|-+.-...+...|...+
T Consensus 14 ~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~isE 54 (63)
T PF06341_consen 14 FDIILFILAMIFINITAFLINQIAGLISIGITLFLAGLISE 54 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888899999998888888888888887543
No 98
>PRK14392 membrane protein; Provisional
Probab=24.76 E-value=1.9e+02 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 23 VADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 23 ~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
+...++-.+|+ ..+|+++|.....-+++.
T Consensus 5 l~~l~~YLlGSIp~g~ii~k~~~g~DIR~~ 34 (207)
T PRK14392 5 LMFILAYLIGAIPSGVWIGKLFYHTDIRQA 34 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcccc
Confidence 34456777887 688999998644334433
No 99
>PRK14415 membrane protein; Provisional
Probab=24.51 E-value=1.7e+02 Score=21.94 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 22 FVADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 22 ~~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
++...+|-.+|+ ..+|+++|...+.-+++.
T Consensus 7 ~~~il~~YLlGSIp~g~ii~k~~~g~DIR~~ 37 (216)
T PRK14415 7 LLVVIVSYILGSIPFGYLVSHRGSKIDIRSF 37 (216)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCcccc
Confidence 344556777887 688999998644334433
No 100
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=24.48 E-value=1.5e+02 Score=24.24 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhhHHHhhcCCCChhhHHHHhhcCC
Q 031771 21 GFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTP 95 (153)
Q Consensus 21 ~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~P~~p~~~~~~~aG~~~ 95 (153)
|+....++..++-...|..+|..-|-.+.++.++.+-.+-.++.+.|.+-+.+-+..+.-..+ -...|..+.++
T Consensus 32 G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~-i~~aY~~~~~~ 105 (397)
T TIGR00814 32 GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYP-ILLIYSVAITN 105 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344444555555555566666544332333222334566667777777655555555444334 44444444443
No 101
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.30 E-value=2.6e+02 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.6
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHhChH
Q 031771 3 YLESSFQLGGGYLFGLPVGFVADSIG-----------------ATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 3 ~P~~~~~~~~G~lfg~~~~~~~~~~g-----------------~~lG~~~~y~igr~~g~~ 46 (153)
+|+..+.+.+|.+.|.++++.-+..= ..+|.+++.++|+++|++
T Consensus 153 ~~~~~~ii~~~~~lG~y~~v~pal~~~~~~~iTg~d~faiGH~~~~g~~~s~~ig~~~G~k 213 (602)
T PRK09548 153 ASMWETVIYGAVLMALYWGISSNIMNKPTQQVTGGAGFSIGHQQQVASWIATKIAPKLGDK 213 (602)
T ss_pred CCcHHHHHHHHHHHHHHHHHhHHHHhHHHHHhcCCCCeEEeehhhHHHHHHHHHHHHhCCC
Confidence 35556677777788877665444322 367788888888888753
No 102
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=24.30 E-value=2.9e+02 Score=20.28 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=19.6
Q ss_pred hHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 031771 86 MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKD 125 (153)
Q Consensus 86 ~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~ 125 (153)
.+.+.+|+.+++.........+ .+.+.++.|..+++
T Consensus 144 avG~s~~~~g~~~~~~~~~igi----vs~i~~~~G~~lG~ 179 (206)
T TIGR02840 144 GAGIGASLLGLNPLATSILVAV----MSFIFVSLGLFLGK 179 (206)
T ss_pred HHHHHHHHhCccHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445667778876555544444 44445555554443
No 103
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=24.24 E-value=1.8e+02 Score=20.41 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 11 GGGYLFGLP--VGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 11 ~~G~lfg~~--~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
.++.++|.. +.+..+..|..++..+.+.+-|..
T Consensus 55 l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~~ 89 (148)
T PF07456_consen 55 LGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKLF 89 (148)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445554 367777777777777777776654
No 104
>PRK14393 membrane protein; Provisional
Probab=23.83 E-value=2.4e+02 Score=20.70 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChHH
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKPF 47 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~~ 47 (153)
+..+|-.+|+ ..+|+++|..|.|.
T Consensus 7 ~~i~~YLlGSip~~~ii~k~~g~Di 31 (194)
T PRK14393 7 LLVGAYLLGSIPTGLLLAKAVGVDI 31 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 4456777777 67899999876653
No 105
>PRK14417 membrane protein; Provisional
Probab=23.81 E-value=2.3e+02 Score=21.58 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 22 FVADSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 22 ~~~~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
++...++-.+|+ ..+|+++|...+.-+++.
T Consensus 6 ll~~i~aYLlGSIp~g~li~k~~~g~DIR~~ 36 (232)
T PRK14417 6 LIMIPAGYLVGAIPMAYLLSRWRRGIDIRRY 36 (232)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhCCCChhhc
Confidence 344566777777 678999998644335443
No 106
>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex. It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].
Probab=23.73 E-value=1.3e+02 Score=19.49 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHhHHHHHHHHHHHH
Q 031771 97 PLLEYMLASWIGMMPITLALVYVG 120 (153)
Q Consensus 97 ~~~~f~~~~~lg~~~~~~~~~~~G 120 (153)
..++|...|.+|.+.|+.+.+.--
T Consensus 47 ~Ir~YVi~SaiG~~vw~v~l~~W~ 70 (94)
T PF10251_consen 47 QIRKYVIRSAIGFLVWTVVLISWI 70 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999998876543
No 107
>PRK14409 membrane protein; Provisional
Probab=23.70 E-value=2e+02 Score=21.37 Aligned_cols=28 Identities=4% Similarity=-0.030 Sum_probs=18.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhChHHHHH
Q 031771 23 VADSIGATIGA-GAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 23 ~~~~~g~~lG~-~~~y~igr~~g~~~~~~ 50 (153)
+...++-.+|+ ..+|+++|.....-+++
T Consensus 4 ~~~i~~YllGsip~~~~i~k~~~g~DiR~ 32 (205)
T PRK14409 4 IFALFSFISGSIPFGYWIALRFRGIDIRK 32 (205)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCccc
Confidence 44556778888 57899999864433443
No 108
>COG3037 SgaT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.44 E-value=1.7e+02 Score=24.64 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=38.4
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHH---------------H--HHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHH
Q 031771 3 YLESSFQLGGGYLFGLPVGFVADSI---------------G--ATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAI 65 (153)
Q Consensus 3 ~P~~~~~~~~G~lfg~~~~~~~~~~---------------g--~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~ 65 (153)
++.....+..|.+.|.+++..-+.. | ..+|.++++++|+++|++.-+ -.++.|+.|-.+.+
T Consensus 153 ~~~~~~vi~~~illGlyw~ispa~~~~~t~kvTg~~gfAiGH~q~l~~~~~~kvg~~fG~~~k~--stE~lklPk~L~ff 230 (481)
T COG3037 153 FSGWLLIIIGAILLGLYWAISPAITQKPTRKVTGGDGFAIGHQQSLAYWLAAKVGKKFGKKKKE--STEDLKLPKWLSIF 230 (481)
T ss_pred ccchHHHHHHHHHHHHHHHhchhhhhHHHHHhcCCCCeeeeehhhHHHHHHHHHHHHhCCCccC--CHHhccCcchhHHH
Confidence 4455566677777777766544432 1 356778888888888863211 11223444555566
Q ss_pred hcchhH
Q 031771 66 QRSGFK 71 (153)
Q Consensus 66 ~~~g~~ 71 (153)
|++-..
T Consensus 231 rDs~va 236 (481)
T COG3037 231 RDSIVA 236 (481)
T ss_pred hcchHH
Confidence 666543
No 109
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=22.96 E-value=1.9e+02 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 031771 22 FVADSIGATIGAGAAFLLGRTIGKPFV 48 (153)
Q Consensus 22 ~~~~~~g~~lG~~~~y~igr~~g~~~~ 48 (153)
.+...+.+.+++.++-++|+..++...
T Consensus 95 a~~y~~~s~~~gl~a~~lG~~l~~~~~ 121 (129)
T PRK14231 95 AVSYVLASFIGGLIMVKFGRMLSNKLL 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777777665433
No 110
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=22.48 E-value=2.1e+02 Score=20.23 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHh
Q 031771 31 IGAGAAFLLGRTI 43 (153)
Q Consensus 31 lG~~~~y~igr~~ 43 (153)
+.+..+|++++..
T Consensus 119 i~~~~~Y~ls~~l 131 (154)
T TIGR03546 119 ILLPPAFAISKVI 131 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 3445556665554
No 111
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=22.21 E-value=4.6e+02 Score=21.81 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=38.1
Q ss_pred chHHHHHHHHHhcchhHhhHHHhhcCCCChhhHHHHhhcCC----CChhHHHHHHHHhHHHHHHHHHHHHhhhh
Q 031771 55 YPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTP----VPLLEYMLASWIGMMPITLALVYVGTTLK 124 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~r~~P~~p~~~~~~~aG~~~----~~~~~f~~~~~lg~~~~~~~~~~~G~~~~ 124 (153)
++..+..++.+++.++...++.-++- .-..|+-| -...||+.....|.+.....-...|..++
T Consensus 80 ~~~~~~v~~fm~~~~Fl~ffIa~LI~-------GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G 146 (414)
T PF03390_consen 80 ESVVEAVTNFMKGSNFLYFFIAALIV-------GSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFG 146 (414)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHH-------hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677788888887887776665542 12233333 24456777776666666666666665554
No 112
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.13 E-value=3.1e+02 Score=19.78 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031771 21 GFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 21 ~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
.++++.+.+..+....|..++..
T Consensus 32 ~~~l~~l~~~~~~~~~~~~~~~~ 54 (199)
T PF10112_consen 32 SFLLSLLIGAVAFAVVYLFGKRR 54 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 33334444444444445555443
No 113
>PRK14403 membrane protein; Provisional
Probab=21.95 E-value=2.5e+02 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHHHHHHHH-HHHHHHHHHhChHHHHHh
Q 031771 25 DSIGATIGA-GAAFLLGRTIGKPFVISK 51 (153)
Q Consensus 25 ~~~g~~lG~-~~~y~igr~~g~~~~~~~ 51 (153)
..++-.+|+ ..+|+++|...+.-+++.
T Consensus 7 ~i~~YLiGSIp~g~ii~k~~~g~DiR~~ 34 (196)
T PRK14403 7 PILGYFIGSIPFSYLIPKWLKGIDVRKV 34 (196)
T ss_pred HHHHHHHhhhhHHHHHHHHhcCCCcccc
Confidence 355777887 456999998644335443
No 114
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=21.74 E-value=4e+02 Score=20.87 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcch
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 69 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g 69 (153)
+|+..-+++-.+-...-....+..|++.|.+.++ .++ ....+++.+...-=|
T Consensus 145 lGpil~~v~~~~~~~~~r~~~~~~GY~~G~~~i~-~l~-~~~~~~it~aasilG 196 (282)
T PRK11103 145 LGPLLFFILFNLVRLATRYYGVAYGYKKGIDIVK-DMG-GGFLQKLTEGASILG 196 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHh-cchHHHHHHHHHHHH
Confidence 4544333333334444566777788888888884 344 345666666544433
No 115
>PRK14405 membrane protein; Provisional
Probab=21.66 E-value=2.3e+02 Score=20.91 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChHHHHH
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~~~~~ 50 (153)
+..++-.+|+ ..+|+++|.....-+++
T Consensus 7 ~~l~~YLlGsip~~~iv~k~~~g~DiR~ 34 (202)
T PRK14405 7 AVVLSYLLGSVSFSYLIAKKIKGIDIRQ 34 (202)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCccc
Confidence 4456788888 56799999863333443
No 116
>PF10702 DUF2507: Protein of unknown function (DUF2507); InterPro: IPR019642 This entry represents a family of conserved proteins found primarily in Firmicutes. The function is not known. ; PDB: 3NJC_B.
Probab=21.58 E-value=50 Score=22.52 Aligned_cols=33 Identities=9% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhH
Q 031771 33 AGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFK 71 (153)
Q Consensus 33 ~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 71 (153)
+-+.||.||..+|+.-. +..+.+...+++.|+.
T Consensus 21 ~~ILYWaGK~lARk~pl------~s~edl~~FF~~agwG 53 (124)
T PF10702_consen 21 DEILYWAGKRLARKFPL------ASLEDLIEFFEQAGWG 53 (124)
T ss_dssp HHHHHHHHHHHHHHS--------SSGGGHHHHHHHTTS-
T ss_pred cchHHHhhHHHHHhCCC------CCHHHHHHHHHHcCCc
Confidence 57889999988764321 1233344556655543
No 117
>COG2261 Predicted membrane protein [Function unknown]
Probab=21.44 E-value=2.3e+02 Score=17.90 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031771 21 GFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 21 ~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
|.+.+++-..+|+.+.=++...+
T Consensus 28 G~~~nIilGIVGA~vg~~l~~~~ 50 (82)
T COG2261 28 GIFMNIILGIVGAFVGGWLLGAL 50 (82)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444443333333
No 118
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=21.42 E-value=3e+02 Score=22.16 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCh
Q 031771 24 ADSIGATIGAGAAFLLGRTIGK 45 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~g~ 45 (153)
++..+..++-.-.|+.+.+..|
T Consensus 143 IA~~~v~i~vln~ffvShyiFr 164 (405)
T COG1133 143 IALIAVVISVLNNFFVSHYIFR 164 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677777778888877664
No 119
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.41 E-value=3e+02 Score=24.07 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=27.5
Q ss_pred ccchHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhChH
Q 031771 2 WYLESSFQLGGGYLFGLPVGF-VADSIGATIGAGAAFLLGRTIGKP 46 (153)
Q Consensus 2 p~P~~~~~~~~G~lfg~~~~~-~~~~~g~~lG~~~~y~igr~~g~~ 46 (153)
|+|-.+..+.....-++..+. +...++..+|+...|..+|+.+++
T Consensus 6 PL~yyl~a~l~~l~g~~~~Ay~l~~~L~~~l~~~~~Y~~~R~~~~~ 51 (616)
T PF10131_consen 6 PLPYYLGALLSLLFGNPIVAYKLFIFLAFFLGGLGMYFLGRRLGRR 51 (616)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 444444433333332333332 345677888999999999999873
No 120
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=21.40 E-value=3.4e+02 Score=19.91 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=29.1
Q ss_pred hhhHHHHhhcCCCChhHHHHHHHHhHHHHHHHHHHHHhhhhccccccc
Q 031771 84 FNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTH 131 (153)
Q Consensus 84 ~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~~~~~~G~~~~~~~~~~~ 131 (153)
+++.-|.-=.+..+..++.... +-......+++++++.+.+...+.+
T Consensus 111 DNigIYiP~Fa~~s~~~l~v~l-~vF~ilv~v~c~la~~l~~~p~i~~ 157 (191)
T PF03596_consen 111 DNIGIYIPLFASLSLAELIVIL-IVFLILVGVWCFLAYKLARIPIIAE 157 (191)
T ss_pred CeEEEeehhhhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHH
Confidence 3444444444455555555554 3467788889999999877665443
No 121
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.98 E-value=60 Score=27.48 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCChhHHHHHHHHhHHHHHHHHHHHH
Q 031771 95 PVPLLEYMLASWIGMMPITLALVYVG 120 (153)
Q Consensus 95 ~~~~~~f~~~~~lg~~~~~~~~~~~G 120 (153)
+=+.++|+..|++|++.|...+.|+=
T Consensus 418 kp~~rkfF~vTFigSIlWIA~fSYLM 443 (588)
T KOG1307|consen 418 KPRSRKFFPVTFIGSILWIAAFSYLM 443 (588)
T ss_pred CccccceeehHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988863
No 122
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.83 E-value=2.8e+02 Score=20.28 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCh
Q 031771 23 VADSIGATIGAGAAFLLGRTIGK 45 (153)
Q Consensus 23 ~~~~~g~~lG~~~~y~igr~~g~ 45 (153)
+.+...+.+|+.+.|.+.|+.-.
T Consensus 144 vgav~~~a~~~ll~y~~~r~~v~ 166 (184)
T COG3216 144 VGAVPAGAIGGLLFYGLTRYSVT 166 (184)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777776543
No 123
>PRK14394 membrane protein; Provisional
Probab=20.69 E-value=2.1e+02 Score=21.06 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=18.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChHHHHH
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKPFVIS 50 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~~~~~ 50 (153)
+..++-.+|+ ..+|+++|..++.-+++
T Consensus 7 ~~~~~YL~Gsip~~~li~k~~~~~DiR~ 34 (195)
T PRK14394 7 IFILCYLIGSIPFGFILSYVGGIGDIRK 34 (195)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCCCccc
Confidence 3456777777 67899999876533443
No 124
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=20.51 E-value=3.8e+02 Score=20.21 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=22.6
Q ss_pred HHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 7 SFQLGGGYLF--GLPVGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 7 ~~~~~~G~lf--g~~~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
++.+.+|..- .-...+++.-++..+.+.++--+|-|.
T Consensus 34 ~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYl 72 (234)
T cd02433 34 NLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYV 72 (234)
T ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhh
Confidence 3445555541 112455566677777778888887777
No 125
>PRK14406 membrane protein; Provisional
Probab=20.50 E-value=2.6e+02 Score=20.70 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=16.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHhChH
Q 031771 24 ADSIGATIGA-GAAFLLGRTIGKP 46 (153)
Q Consensus 24 ~~~~g~~lG~-~~~y~igr~~g~~ 46 (153)
...++-.+|+ ..+|+++|..+.|
T Consensus 5 ~~i~~YLlGSIp~~~ii~k~~g~D 28 (199)
T PRK14406 5 AIIIGYFIGAIPFSFIIPKLKGID 28 (199)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCC
Confidence 3455777887 6789999975554
Done!