Query 031771
Match_columns 153
No_of_seqs 191 out of 1099
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 53.3 18 0.00062 25.2 4.3 31 5-35 47-77 (189)
2 2hfr_A Fowlicidin-3, cathelici 53.1 5.9 0.0002 18.3 1.1 18 77-94 2-19 (27)
3 2l9u_A Receptor tyrosine-prote 41.3 35 0.0012 17.1 3.3 18 26-43 18-35 (40)
4 1p58_D Envelope protein M; fla 31.7 35 0.0012 20.2 2.5 22 55-76 26-47 (75)
5 3j27_B Matrix protein, small e 31.3 33 0.0011 20.3 2.3 21 55-75 26-46 (75)
6 1ytr_A Bacteriocin plantaricin 26.6 31 0.0011 15.5 1.2 15 56-70 12-26 (26)
7 2lbg_A Major prion protein; co 25.2 62 0.0021 15.1 2.8 20 24-43 6-25 (27)
8 2l48_A N-acetylmuramoyl-L-alan 21.4 37 0.0013 20.7 1.2 18 55-72 65-82 (85)
9 2j3w_B ZGC 92866, trafficking 12.9 1.8E+02 0.0061 20.2 3.3 17 57-73 81-97 (188)
10 1a92_A Delta antigen; leucine 12.3 1.6E+02 0.0054 15.8 2.1 23 45-67 3-25 (50)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=53.31 E-value=18 Score=25.16 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 031771 5 ESSFQLGGGYLFGLPVGFVADSIGATIGAGA 35 (153)
Q Consensus 5 ~~~~~~~~G~lfg~~~~~~~~~~g~~lG~~~ 35 (153)
+++..+.+|+++|+..|.+...+...+++..
T Consensus 47 ~~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 47 SDVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GGHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998888888766
No 2
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=53.11 E-value=5.9 Score=18.26 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=13.0
Q ss_pred hhcCCCChhhHHHHhhcC
Q 031771 77 RLVPLLPFNMLNYLLSVT 94 (153)
Q Consensus 77 r~~P~~p~~~~~~~aG~~ 94 (153)
||.|.+|-.+...++|+-
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 788999966666666754
No 3
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=41.26 E-value=35 Score=17.10 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 031771 26 SIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 26 ~~g~~lG~~~~y~igr~~ 43 (153)
.+-.++|+...||=||+-
T Consensus 18 vif~~lg~tflywrgrrh 35 (40)
T 2l9u_A 18 VIFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCceeEEEccccc
Confidence 344578999999999874
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=31.73 E-value=35 Score=20.22 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhcchhHhhHHH
Q 031771 55 YPQFRSVALAIQRSGFKIVLLL 76 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~ 76 (153)
.++++|.|+|.-||..+.+...
T Consensus 26 ~~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 26 WKHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHHChHHHHHHH
Confidence 3689999999999987776654
No 5
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=31.29 E-value=33 Score=20.34 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=16.3
Q ss_pred chHHHHHHHHHhcchhHhhHH
Q 031771 55 YPQFRSVALAIQRSGFKIVLL 75 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~ 75 (153)
+++++|.|+|.-||..+.+..
T Consensus 26 ~~~l~rvE~WilrNp~~al~~ 46 (75)
T 3j27_B 26 WKHAQRIETWILRHPGFTIMA 46 (75)
T ss_dssp HHHHHHHHHHHHHCCTHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHH
Confidence 368899999998887666554
No 6
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=26.63 E-value=31 Score=15.50 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcchh
Q 031771 56 PQFRSVALAIQRSGF 70 (153)
Q Consensus 56 ~~~~~~~~~~~~~g~ 70 (153)
..++++++.++|+|+
T Consensus 12 taikqvkklfkkwgw 26 (26)
T 1ytr_A 12 TAIKQVKKLFKKWGW 26 (26)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 456677788888875
No 7
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=25.23 E-value=62 Score=15.09 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031771 24 ADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 24 ~~~~g~~lG~~~~y~igr~~ 43 (153)
....|..+|+.-.|++|+..
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 34578888888889888753
No 8
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=21.36 E-value=37 Score=20.66 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.0
Q ss_pred chHHHHHHHHHhcchhHh
Q 031771 55 YPQFRSVALAIQRSGFKI 72 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~ 72 (153)
..+++++..+++++|++.
T Consensus 65 ~~eLdk~t~wLD~rgWwY 82 (85)
T 2l48_A 65 DAQLKAMKEYLDRKGWWY 82 (85)
T ss_dssp HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhccCceE
Confidence 468999999999998763
No 9
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=12.91 E-value=1.8e+02 Score=20.21 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcchhHhh
Q 031771 57 QFRSVALAIQRSGFKIV 73 (153)
Q Consensus 57 ~~~~~~~~~~~~g~~~~ 73 (153)
+...+.+.+.|..|+.+
T Consensus 81 d~ld~l~fI~k~~Wk~l 97 (188)
T 2j3w_B 81 KVLNILLFIKVNVWKAL 97 (188)
T ss_dssp SHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444555566555443
No 10
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=12.28 E-value=1.6e+02 Score=15.79 Aligned_cols=23 Identities=0% Similarity=0.108 Sum_probs=0.0
Q ss_pred hHHHHHhhcCchHHHHHHHHHhc
Q 031771 45 KPFVISKLKDYPQFRSVALAIQR 67 (153)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~ 67 (153)
.+.++++...+++.+.+++.++|
T Consensus 3 ee~LeqWv~~Rkk~eeler~lrk 25 (50)
T 1a92_A 3 EDILEQWVSGRKKLEELERDLRK 25 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!