Query 031771
Match_columns 153
No_of_seqs 191 out of 1099
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 07:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031771.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031771hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t33a2 a.121.1.1 (A:89-220) P 23.2 47 0.0034 20.1 3.8 43 26-68 80-122 (132)
2 d2osoa1 d.278.1.3 (A:5-156) Hy 16.6 15 0.0011 23.1 0.2 40 28-73 40-79 (152)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 13.4 1E+02 0.0075 16.5 6.5 13 92-104 61-73 (86)
4 d1wc9a_ d.278.1.2 (A:) Traffic 12.0 98 0.0071 19.3 3.3 35 39-73 36-75 (161)
5 d2ckca1 d.76.2.1 (A:2563-2622) 12.0 13 0.00097 19.7 -0.9 26 55-80 23-48 (60)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 11.6 2E+02 0.015 18.8 7.0 96 18-114 83-196 (290)
7 d1z9ha1 a.45.1.1 (A:213-373) M 9.3 85 0.0062 19.7 2.2 24 16-43 58-81 (161)
8 d2q7ra1 f.56.1.1 (A:1-139) Ara 9.1 2E+02 0.015 17.2 5.3 36 29-64 16-56 (139)
9 d2j3wb1 d.278.1.2 (B:21-188) T 8.0 1.6E+02 0.012 18.2 3.3 11 60-70 64-74 (168)
10 d1otsa_ f.20.1.1 (A:) Clc chlo 7.8 1.6E+02 0.012 21.1 3.5 22 27-48 407-428 (444)
No 1
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=23.20 E-value=47 Score=20.13 Aligned_cols=43 Identities=16% Similarity=-0.015 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcc
Q 031771 26 SIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 68 (153)
Q Consensus 26 ~~g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~ 68 (153)
..-+++|.++.|.++|..-.......--..++.+++++.+.++
T Consensus 80 ~~~sivGq~l~f~var~~~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 80 HTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 4446789999998888643322221111246777777777665
No 2
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=16.65 E-value=15 Score=23.06 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHhcchhHhh
Q 031771 28 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIV 73 (153)
Q Consensus 28 g~~lG~~~~y~igr~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 73 (153)
+..-.+.+.|+.||..|++... +..+.+.+.++++|+-.+
T Consensus 40 ~~~~~~~iLY~aGk~lGr~~~~------k~~eel~~ff~~~g~G~L 79 (152)
T d2osoa1 40 KELGSETSLYEIGEEFGKMLSP------KNIEELKKIFKLMNFGDL 79 (152)
T ss_dssp C--CCCCCHHHHHHHHHHHHCC------SSHHHHHHHHHHHTCCEE
T ss_pred cccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCCceE
Confidence 3333457789999998875332 245666777777776544
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=1e+02 Score=16.49 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=5.8
Q ss_pred hcCCCChhHHHHH
Q 031771 92 SVTPVPLLEYMLA 104 (153)
Q Consensus 92 G~~~~~~~~f~~~ 104 (153)
...+++...++.+
T Consensus 61 ~~~Gi~~t~l~a~ 73 (86)
T d2vv5a3 61 GRVGVQTASVIAV 73 (86)
T ss_dssp HTTTCCSTTHHHH
T ss_pred HHhCCCHHHHHHH
Confidence 3444554444443
No 4
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.03 E-value=98 Score=19.26 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=15.2
Q ss_pred HHHHhChHHHHHhh-----cCchHHHHHHHHHhcchhHhh
Q 031771 39 LGRTIGKPFVISKL-----KDYPQFRSVALAIQRSGFKIV 73 (153)
Q Consensus 39 igr~~g~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~ 73 (153)
+|+..|.+.+++.. ++..+...+.+.+.+..|..+
T Consensus 36 ~G~~IG~RLiE~~~~r~~~~R~~~~l~~l~fI~~~~wk~~ 75 (161)
T d1wc9a_ 36 MGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMY 75 (161)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSCCCHHHHHHHHHHTHHHHH
T ss_pred hCcchhHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHH
Confidence 34444555555432 122233434445555554443
No 5
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.98 E-value=13 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=20.9
Q ss_pred chHHHHHHHHHhcchhHhhHHHhhcC
Q 031771 55 YPQFRSVALAIQRSGFKIVLLLRLVP 80 (153)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~~~~r~~P 80 (153)
.+..+.+.+|+++|.-+.+-.-+++|
T Consensus 23 AP~~~~L~~WL~~hP~y~Vd~p~~~p 48 (60)
T d2ckca1 23 APKNKDLVEWLKLHPTYTVDMPSYVP 48 (60)
T ss_dssp SCBHHHHHHHHHHCTTEEESCCCCCC
T ss_pred CcCHHHHHHHHHHCCCcEeecCccCc
Confidence 36788999999999888776666666
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=11.63 E-value=2e+02 Score=18.83 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHhhc------Cc-------hHHHHHHHHH---hcchhHhhHHHhhc
Q 031771 18 LPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKLK------DY-------PQFRSVALAI---QRSGFKIVLLLRLV 79 (153)
Q Consensus 18 ~~~~~~~~~~g~~lG~~~~y~igr~~--g~~~~~~~~~------~~-------~~~~~~~~~~---~~~g~~~~~~~r~~ 79 (153)
...+...+.+...+|-..+|.+.|+- +++......- .. ..+.+..... ..+....+++. ..
T Consensus 83 l~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~~~~~~~~~~~ii~~-~~ 161 (290)
T d2r6gg1 83 VKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFA-YL 161 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTSHHHHHHH-HT
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHHHHhhccccccchhheeehhhcccccCCcccccccCchhhhhhh-cc
Confidence 45566667777788888999998863 3333221110 00 1111111111 11122233333 33
Q ss_pred CCCChhhHHHHhhcCCCChhHHHHHHHHhHHHHHH
Q 031771 80 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITL 114 (153)
Q Consensus 80 P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~~~~~ 114 (153)
-.+|+.+..+.+++.++|...+=.+...|+-+|..
T Consensus 162 ~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~ 196 (290)
T d2r6gg1 162 GGIALHVWTIKGYFETIDSSLEEAAALDGATPWQA 196 (290)
T ss_dssp TTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHH
T ss_pred cceeeeeeccchhhhcchhhhhhhHhhcCCCHHHH
Confidence 45789999999999999988888888877755543
No 7
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=9.31 E-value=85 Score=19.66 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031771 16 FGLPVGFVADSIGATIGAGAAFLLGRTI 43 (153)
Q Consensus 16 fg~~~~~~~~~~g~~lG~~~~y~igr~~ 43 (153)
||++.-.+.. ..|+.+.|.|+++.
T Consensus 58 f~~~~r~~~~----~~Ga~~M~~I~krl 81 (161)
T d1z9ha1 58 FGAVEGAVAK----YMGAAAMYLISKRL 81 (161)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH----HcCHHHHHHHHHHH
Confidence 5555554444 45668889998865
No 8
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.12 E-value=2e+02 Score=17.17 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhChHHHHHhhc-----CchHHHHHHHH
Q 031771 29 ATIGAGAAFLLGRTIGKPFVISKLK-----DYPQFRSVALA 64 (153)
Q Consensus 29 ~~lG~~~~y~igr~~g~~~~~~~~~-----~~~~~~~~~~~ 64 (153)
+.++.....+++.+.++.+.+.+.+ .+|+++|.+|.
T Consensus 16 t~l~~~~~~~ls~~Vg~aR~k~~v~~p~~~g~~~f~ra~Ra 56 (139)
T d2q7ra1 16 TLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTA 56 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Confidence 4555566667777777654443321 13556655544
No 9
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=8.05 E-value=1.6e+02 Score=18.20 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.5
Q ss_pred HHHHHHhcchh
Q 031771 60 SVALAIQRSGF 70 (153)
Q Consensus 60 ~~~~~~~~~g~ 70 (153)
.+.+.+.|..|
T Consensus 64 ~~l~fI~k~~W 74 (168)
T d2j3wb1 64 NILLFIKVNVW 74 (168)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 10
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.81 E-value=1.6e+02 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhChHHH
Q 031771 27 IGATIGAGAAFLLGRTIGKPFV 48 (153)
Q Consensus 27 ~g~~lG~~~~y~igr~~g~~~~ 48 (153)
.-.++.+.++|+++|.++++-+
T Consensus 407 ~p~~ia~~~a~~v~~~~~~~si 428 (444)
T d1otsa_ 407 LPMIITGLGATLLAQFTGGKPL 428 (444)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCCh
Confidence 3456678889999998875433
Done!