BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031772
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1MK05|RN170_BOVIN E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3
SV=2
Length = 259
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
W +GS L A CP+CR+ +TLL+P Q D V + Q + YNR F G +
Sbjct: 116 WRYGSWLGAISCPICRQTVTLLLPVFGENDQSQD--VVSLHQDISDYNRRFSG--QPRSI 171
Query: 64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
+RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+D +PEAL GI+G
Sbjct: 172 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 230
Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
LDD + L ++++ +YR V+ R
Sbjct: 231 FLDDFFVIFLLLIYISIMYREVITQR 256
>sp|Q28DS3|RN170_XENTR E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170
PE=2 SV=1
Length = 257
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
W +GS L A CP+CR+ +TL+ P + Q +IL++ YNR F G L
Sbjct: 115 WRYGSWLGAINCPICRQTVTLIFPLFQATEQEDS---QNILREAIGYNRRFSG--QPRSL 169
Query: 64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+DIIPEA+ G++G
Sbjct: 170 MDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIVLCLLGALFYLVSPLDIIPEAVFGLLG 228
Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
LDD + L ++++ +YR V+ R
Sbjct: 229 FLDDFFVLFLLLIYISIMYREVVTQR 254
>sp|Q8CBG9|RN170_MOUSE E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1
SV=1
Length = 286
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
W +GS L A CP+CR+ +TLL+ Q D V + Q V YNR F G +
Sbjct: 143 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VIRLRQDVNDYNRRFSG--QPRSI 198
Query: 64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
+RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+D +PEAL GI+G
Sbjct: 199 MERIMDLPTLLRHAFREVFSVG-GLFWMFRIRIMLCLMGAFFYLISPLDFVPEALFGILG 257
Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
LDD + L ++++ +YR V+ R
Sbjct: 258 FLDDFFVIFLLLIYISIMYREVITQR 283
>sp|Q96K19|RN170_HUMAN E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1
SV=2
Length = 258
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
W +GS L A CP+CR+ +TLL+ Q D V + Q + YNR F G +
Sbjct: 115 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQD--VLRLHQDINDYNRRFSG--QPRSI 170
Query: 64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
+RI DLP LLR RE+ L + R R+ + ++ + Y+ SP+D +PEAL GI+G
Sbjct: 171 MERIMDLPTLLRHAFREMFSVG-GLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILG 229
Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
LDD + L ++++ +YR V+ R
Sbjct: 230 FLDDFFVIFLLLIYISIMYREVITQR 255
>sp|Q7SZN2|RN170_DANRE E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2
SV=1
Length = 266
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIP----NDDSLRQRHDPAVGD-ILQKVESYNRIFGGPT 58
W +G+ L A CP+CR+ +TLL P ++ S P IL + YNR F G
Sbjct: 116 WRYGTWLGAISCPICRQMVTLLFPLFQDSEQSAVAADSPVEPTLILTDISDYNRRFSG-- 173
Query: 59 TANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEAL 118
L R++D+P LLR RE+ L + R R+ + + + Y+ SP+D +PE +
Sbjct: 174 QPRSLLDRLRDVPTLLRHAFREMFSVG-GLFWMFRVRILLCVCGALAYLVSPLDFLPEGV 232
Query: 119 LGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGG 152
LG++G LDD + LL F++++ +YR V+ R G
Sbjct: 233 LGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266
>sp|Q5PPX5|RN170_XENLA E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2
SV=1
Length = 257
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPTTANGL 63
W +G+ L A CP+CR+ +TLL P + Q +ILQ+ YNR F G L
Sbjct: 115 WRYGTWLGAINCPICRQTVTLLFPLFGATDQED---AQNILQEATGYNRRFSG--QPRSL 169
Query: 64 FQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVG 123
RI DLP LLR RE+ L + R R+ + ++ + +Y+ SP+DIIPEAL GI+G
Sbjct: 170 MDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIVLCLLGALLYLVSPLDIIPEALFGILG 228
Query: 124 LLDDLLIALLCFLHVAALYRAVLYNR 149
LDDL + L ++++ +YR V+ R
Sbjct: 229 FLDDLFVLFLLLIYISIMYREVVTQR 254
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1
PE=1 SV=2
Length = 2364
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 5 DHGSTLQACRCPLCRRRITLLIPNDDSLR---QRHDPAVGDILQKVESYNRIFGGPT-TA 60
DHG LQ + LLI + +L+ Q H P + DI ++ S N + + +A
Sbjct: 1512 DHGHNLQT---------VQLLIKKNQTLQKEIQGHQPRIDDIFER--SQNIVTDSSSLSA 1560
Query: 61 NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVY 97
+ QR+ DL L L+ E HR L RA+ Y
Sbjct: 1561 EAIRQRLADLKQLWGLLIEETEKRHRRLEEAHRAQQY 1597
>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus GN=Sptbn1
PE=1 SV=2
Length = 2363
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 5 DHGSTLQACRCPLCRRRITLLIPNDDSLR---QRHDPAVGDILQKVESYNRIFGGPT-TA 60
DHG LQ + LLI + +L+ Q H P + DI ++ S N I + A
Sbjct: 1512 DHGHNLQT---------VQLLIKKNQTLQKEIQGHQPRIDDIFER--SQNIITDSSSLNA 1560
Query: 61 NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVY 97
+ QR+ DL L L+ E HR L +A+ Y
Sbjct: 1561 EAIRQRLADLKQLWGLLIEETEKRHRRLEEAHKAQQY 1597
>sp|O15040|TCPR2_HUMAN Tectonin beta-propeller repeat-containing protein 2 OS=Homo sapiens
GN=TECPR2 PE=1 SV=4
Length = 1411
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 4 WDHGSTLQACRCPLCRRRITLLIPNDDSLRQ----RHDPAVGDILQKVESYNRIFGGPTT 59
W+H LQAC+ L R + PN D R+ +PA GD +K+ F T
Sbjct: 1306 WEHVPGLQACQLALSTRTVWARCPNGDLARRYGVTDKNPA-GDYWKKIPGSVSCF--TVT 1362
Query: 60 ANGLFQRIQDLPFLLRRLVRELVDPH 85
A+ + +LL+RL + H
Sbjct: 1363 ASDELWAVGPPGYLLQRLTKTFSHSH 1388
>sp|P29586|YPV9_METTF Uncharacterized protein ORF9 OS=Methanobacterium thermoformicicum
PE=4 SV=1
Length = 146
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 72 FLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPEALLGIVGLLDDLLIA 131
FLL L+R SL V R +V A+ +S SP+D+ PE + G L DL ++
Sbjct: 38 FLLAELLR-----SESLEEVDRLKVAAALGYSV----SPLDMFPEEIYGPYSFLGDLFVS 88
Query: 132 L 132
L
Sbjct: 89 L 89
>sp|P53791|SC5A1_SHEEP Sodium/glucose cotransporter 1 OS=Ovis aries GN=SLC5A1 PE=2 SV=1
Length = 664
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 93 RARVYIAMIFSAVYIFSPI--DIIPEALLGIVGLLDDLLIALLCFLHVAALY 142
R +VY++++ +YIF+ I DI A+ + L DL +A+ L + ALY
Sbjct: 140 RIQVYLSVLSLVLYIFTKISADIFSGAIFINLALGLDLYLAIFILLAITALY 191
>sp|Q20502|HUTH_CAEEL Probable histidine ammonia-lyase OS=Caenorhabditis elegans
GN=F47B10.2 PE=1 SV=1
Length = 677
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 1 MLVWDHGSTL--QACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPT 58
+L+ D S L RC I L + ++D +R+ L+K+ S +R G T
Sbjct: 129 LLILDGNSLLPEDLVRCEKGECAIQLSMESEDRIRKART-----FLEKIASEHRAVYGVT 183
Query: 59 TANGLFQRIQDLPFLLRRLVRELVDPHRS---LPLVI-RARVYIAM 100
T G F + P L++L L+ H + PL RAR+ +A+
Sbjct: 184 TGFGTFSNVTIPPEKLKKLQLNLIRSHATGYGEPLAPNRARMLLAL 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.148 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,113,962
Number of Sequences: 539616
Number of extensions: 2238426
Number of successful extensions: 6174
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6154
Number of HSP's gapped (non-prelim): 18
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)