Query 031772
Match_columns 153
No_of_seqs 166 out of 787
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 90.4 0.052 1.8E-06 33.9 0.0 17 13-29 45-61 (63)
2 2ea5_A Cell growth regulator w 90.3 0.097 3.3E-06 33.3 1.3 19 13-31 47-65 (68)
3 2vje_A E3 ubiquitin-protein li 89.7 0.072 2.5E-06 33.3 0.3 17 13-29 46-62 (64)
4 1jm7_A BRCA1, breast cancer ty 89.2 0.64 2.2E-05 31.3 4.9 43 11-58 57-101 (112)
5 1chc_A Equine herpes virus-1 r 87.8 0.21 7.3E-06 30.8 1.6 17 13-29 41-57 (68)
6 2kiz_A E3 ubiquitin-protein li 85.3 0.27 9.2E-06 30.4 1.0 16 14-29 53-68 (69)
7 2ecg_A Baculoviral IAP repeat- 84.6 0.33 1.1E-05 30.9 1.2 17 13-29 57-73 (75)
8 4ic3_A E3 ubiquitin-protein li 83.5 0.32 1.1E-05 31.0 0.8 17 13-29 56-72 (74)
9 1iym_A EL5; ring-H2 finger, ub 83.2 0.32 1.1E-05 28.6 0.7 13 12-24 43-55 (55)
10 2yho_A E3 ubiquitin-protein li 82.1 0.47 1.6E-05 30.8 1.2 18 14-31 51-68 (79)
11 2ep4_A Ring finger protein 24; 79.9 0.68 2.3E-05 28.9 1.3 15 14-28 54-68 (74)
12 2ysl_A Tripartite motif-contai 76.4 0.83 2.8E-05 28.3 1.0 14 11-24 56-69 (73)
13 2ea6_A Ring finger protein 4; 76.1 0.72 2.5E-05 28.1 0.6 12 12-23 56-67 (69)
14 1bor_A Transcription factor PM 76.0 0.9 3.1E-05 27.2 1.0 14 11-24 36-49 (56)
15 2ecm_A Ring finger and CHY zin 75.7 0.73 2.5E-05 26.9 0.5 11 13-23 44-54 (55)
16 1x4j_A Ring finger protein 38; 75.5 0.75 2.6E-05 28.9 0.6 12 12-23 60-71 (75)
17 1e4u_A Transcriptional repress 74.7 0.96 3.3E-05 29.4 1.0 14 11-24 49-62 (78)
18 2ect_A Ring finger protein 126 73.7 0.89 3.1E-05 28.6 0.6 12 13-24 53-64 (78)
19 2xeu_A Ring finger protein 4; 72.9 0.97 3.3E-05 27.0 0.6 13 12-24 44-56 (64)
20 2ecy_A TNF receptor-associated 72.6 1.2 4E-05 27.3 0.9 14 11-24 49-62 (66)
21 3ng2_A RNF4, snurf, ring finge 72.5 1 3.4E-05 27.7 0.6 11 13-23 52-62 (71)
22 2ecl_A Ring-box protein 2; RNF 71.8 1 3.6E-05 29.0 0.6 13 12-24 64-76 (81)
23 2ct2_A Tripartite motif protei 71.4 1.3 4.4E-05 28.3 1.0 14 11-24 55-68 (88)
24 1g25_A CDK-activating kinase a 70.9 1.4 4.8E-05 26.8 1.0 13 12-24 43-55 (65)
25 2egp_A Tripartite motif-contai 70.8 1.4 4.7E-05 27.6 1.0 14 11-24 52-65 (79)
26 2d8t_A Dactylidin, ring finger 70.5 1.2 4E-05 27.7 0.6 12 13-24 50-61 (71)
27 2y43_A E3 ubiquitin-protein li 69.9 2.9 9.8E-05 27.6 2.5 12 13-24 58-69 (99)
28 2ecv_A Tripartite motif-contai 68.2 1.6 5.6E-05 27.4 0.9 14 11-24 58-71 (85)
29 3lrq_A E3 ubiquitin-protein li 67.4 1.3 4.6E-05 29.5 0.4 12 13-24 59-70 (100)
30 2ecw_A Tripartite motif-contai 67.2 1.7 5.8E-05 27.3 0.9 14 11-24 58-71 (85)
31 2djb_A Polycomb group ring fin 67.0 2.2 7.5E-05 26.5 1.4 13 13-25 51-63 (72)
32 4ayc_A E3 ubiquitin-protein li 66.7 1.5 5.2E-05 31.0 0.6 13 12-24 87-99 (138)
33 2ecn_A Ring finger protein 141 66.5 1.3 4.4E-05 27.2 0.2 14 11-24 47-60 (70)
34 2ckl_A Polycomb group ring fin 65.0 3.6 0.00012 27.5 2.2 13 13-25 51-63 (108)
35 2csy_A Zinc finger protein 183 62.0 2.2 7.5E-05 27.1 0.6 12 12-23 49-60 (81)
36 3l11_A E3 ubiquitin-protein li 61.0 2.5 8.5E-05 28.7 0.8 13 12-24 50-62 (115)
37 1v87_A Deltex protein 2; ring- 60.8 2.4 8.3E-05 28.5 0.7 15 11-25 81-95 (114)
38 2ckl_B Ubiquitin ligase protei 60.7 1.5 5.1E-05 31.8 -0.4 12 12-23 90-101 (165)
39 3fl2_A E3 ubiquitin-protein li 60.3 2.8 9.5E-05 28.9 1.0 14 11-24 86-99 (124)
40 2yur_A Retinoblastoma-binding 57.9 3.4 0.00011 25.8 1.0 11 12-22 52-62 (74)
41 1t1h_A Gspef-atpub14, armadill 56.6 3.6 0.00012 25.7 0.9 13 12-24 43-55 (78)
42 3tx3_A Uncharacterized protein 54.6 74 0.0025 24.8 9.8 89 37-151 102-190 (249)
43 3ztg_A E3 ubiquitin-protein li 52.7 4.4 0.00015 26.1 0.9 12 12-23 50-61 (92)
44 2d8s_A Cellular modulator of i 49.9 6.6 0.00022 25.4 1.4 15 12-26 58-72 (80)
45 4ap4_A E3 ubiquitin ligase RNF 49.7 4.7 0.00016 27.3 0.7 12 13-24 49-60 (133)
46 1jm7_B BARD1, BRCA1-associated 48.1 15 0.00051 24.8 3.1 11 13-23 56-66 (117)
47 3hct_A TNF receptor-associated 47.5 5.1 0.00017 27.3 0.6 11 14-24 55-65 (118)
48 1rmd_A RAG1; V(D)J recombinati 44.5 6 0.00021 26.7 0.6 13 12-24 58-70 (116)
49 1l8d_A DNA double-strand break 43.8 31 0.0011 23.1 4.2 11 13-23 48-58 (112)
50 3vhs_A ATPase wrnip1; zinc fin 43.1 4.5 0.00015 21.3 -0.2 12 11-22 5-16 (29)
51 2ct0_A Non-SMC element 1 homol 41.8 14 0.00049 23.7 2.1 15 13-27 53-67 (74)
52 2jrr_A Uncharacterized protein 41.3 3.9 0.00013 26.2 -0.8 15 10-24 38-52 (67)
53 3epz_A DNA (cytosine-5)-methyl 40.2 8.4 0.00029 31.0 0.9 15 9-23 15-29 (268)
54 1wvk_A AT2G23090/F21P24.15; st 39.5 4.7 0.00016 27.1 -0.6 12 11-22 44-55 (86)
55 2wul_A Glutaredoxin related pr 39.2 12 0.00041 26.1 1.5 17 11-27 31-47 (118)
56 2yu4_A E3 SUMO-protein ligase 38.9 13 0.00043 24.4 1.5 20 2-21 37-59 (94)
57 4ayb_P DNA-directed RNA polyme 38.8 8.9 0.00031 22.9 0.6 19 10-28 21-39 (48)
58 3h0g_L DNA-directed RNA polyme 35.9 12 0.00041 23.6 0.9 14 10-23 36-49 (63)
59 3tdg_A DSBG, putative uncharac 35.7 6.3 0.00022 31.7 -0.5 12 12-23 156-167 (273)
60 1wgm_A Ubiquitin conjugation f 35.2 12 0.0004 25.0 0.9 12 13-24 58-69 (98)
61 2kre_A Ubiquitin conjugation f 33.3 13 0.00046 24.8 0.9 13 12-24 63-75 (100)
62 2jvm_A Uncharacterized protein 33.2 8.3 0.00028 25.5 -0.2 15 10-24 51-65 (80)
63 3htk_C E3 SUMO-protein ligase 32.0 11 0.00037 30.3 0.3 20 2-24 211-232 (267)
64 1vyx_A ORF K3, K3RING; zinc-bi 31.6 16 0.00055 22.2 1.0 13 12-24 47-59 (60)
65 1wim_A KIAA0161 protein; ring 31.0 8 0.00027 25.2 -0.6 20 2-21 37-61 (94)
66 3gv1_A Disulfide interchange p 29.6 9 0.00031 27.3 -0.5 12 12-23 23-34 (147)
67 2kr4_A Ubiquitin conjugation f 29.4 49 0.0017 21.1 3.2 12 13-24 49-60 (85)
68 3vk6_A E3 ubiquitin-protein li 28.6 16 0.00054 25.2 0.6 13 13-25 38-50 (101)
69 2jvx_A NF-kappa-B essential mo 28.0 13 0.00046 19.6 0.1 9 13-21 4-12 (28)
70 3hcs_A TNF receptor-associated 28.0 16 0.00055 26.2 0.6 11 14-24 55-65 (170)
71 3mjh_B Early endosome antigen 27.5 16 0.00055 20.1 0.4 12 12-23 5-16 (34)
72 2m0e_A Zinc finger and BTB dom 27.5 23 0.00078 16.1 1.0 12 12-23 2-13 (29)
73 4dvc_A Thiol:disulfide interch 27.4 10 0.00036 26.6 -0.5 8 13-20 31-38 (184)
74 2lqo_A Putative glutaredoxin R 26.7 14 0.00049 24.3 0.1 18 11-28 10-27 (92)
75 1aba_A Glutaredoxin; electron 25.6 12 0.0004 23.6 -0.5 16 11-26 10-25 (87)
76 1p7a_A BF3, BKLF, kruppel-like 25.6 24 0.00084 17.5 0.9 14 10-23 9-22 (37)
77 3ipz_A Monothiol glutaredoxin- 25.4 15 0.0005 24.5 -0.0 15 13-27 31-45 (109)
78 1ard_A Yeast transcription fac 24.2 28 0.00096 15.9 1.0 12 12-23 2-13 (29)
79 1lv3_A Hypothetical protein YA 24.0 18 0.00061 23.2 0.2 13 11-23 8-20 (68)
80 2jz8_A Uncharacterized protein 23.7 18 0.00063 24.2 0.2 15 10-24 46-60 (87)
81 2kw0_A CCMH protein; oxidoredu 23.7 80 0.0027 21.1 3.4 31 11-50 22-52 (90)
82 2m0f_A Zinc finger and BTB dom 23.5 19 0.00064 16.5 0.2 12 12-23 2-13 (29)
83 1q16_C Cytochrome B-NR, respir 22.9 2.4E+02 0.0081 21.0 7.4 51 98-148 61-116 (225)
84 1klr_A Zinc finger Y-chromosom 22.6 32 0.0011 15.7 1.0 12 12-23 2-13 (30)
85 1znf_A 31ST zinc finger from X 22.0 29 0.00098 15.6 0.7 12 12-23 1-12 (27)
86 2lvu_A Zinc finger and BTB dom 27.6 19 0.00065 16.3 0.0 12 12-23 2-13 (26)
87 3ga8_A HTH-type transcriptiona 22.0 24 0.00083 22.3 0.5 18 37-54 49-66 (78)
88 3gmf_A Protein-disulfide isome 21.7 16 0.00054 27.4 -0.5 9 13-21 25-33 (205)
89 2e72_A POGO transposable eleme 21.3 31 0.001 20.7 0.8 17 11-27 11-27 (49)
90 2elr_A Zinc finger protein 406 21.1 34 0.0012 16.7 0.9 14 10-23 7-20 (36)
91 3knv_A TNF receptor-associated 21.1 14 0.00049 26.2 -0.8 12 12-23 66-77 (141)
92 2lvt_A Zinc finger and BTB dom 26.3 21 0.00071 16.6 0.0 12 12-23 2-13 (29)
93 1x4u_A Zinc finger, FYVE domai 20.8 50 0.0017 21.2 1.9 23 2-26 6-28 (84)
94 3o9x_A Uncharacterized HTH-typ 20.6 28 0.00096 23.7 0.7 10 12-21 2-11 (133)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=90.38 E-value=0.052 Score=33.93 Aligned_cols=17 Identities=35% Similarity=0.901 Sum_probs=13.9
Q ss_pred CCCCcccccccccccCC
Q 031772 13 CRCPLCRRRITLLIPND 29 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~ 29 (153)
-+||+||++|+..++.+
T Consensus 45 ~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 45 ASCPICKKEIQLVIKVF 61 (63)
T ss_dssp CBCTTTCCBCCEEEEEE
T ss_pred CcCCCcCchhhceEEEe
Confidence 48999999998876654
No 2
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.29 E-value=0.097 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=15.4
Q ss_pred CCCCcccccccccccCCCc
Q 031772 13 CRCPLCRRRITLLIPNDDS 31 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~~~ 31 (153)
-+||+||++|+..++.+.+
T Consensus 47 ~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 47 QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcchhceEEeecC
Confidence 4799999999988777643
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=89.69 E-value=0.072 Score=33.34 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=13.7
Q ss_pred CCCCcccccccccccCC
Q 031772 13 CRCPLCRRRITLLIPND 29 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~ 29 (153)
-+||+||++|+..++.+
T Consensus 46 ~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 46 KPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp CCCTTTCCCCCEEEEEE
T ss_pred CcCCCcCcchhceEeee
Confidence 47999999998776654
No 4
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.18 E-value=0.64 Score=31.29 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=28.9
Q ss_pred CCCCCCcccccccc--cccCCCcccccCChHHHHHHHHHHHHHHHhCCCC
Q 031772 11 QACRCPLCRRRITL--LIPNDDSLRQRHDPAVGDILQKVESYNRIFGGPT 58 (153)
Q Consensus 11 ~~~~CP~CR~~i~~--L~p~~~~~~~~~d~~~~~v~~~i~~YNr~fs~~~ 58 (153)
++.+||+||++++. +.+. ..-++.++++.+.++++....+...
T Consensus 57 ~~~~CP~Cr~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (112)
T 1jm7_A 57 GPSQCPLCKNDITKRSLQES-----TRFSQLVEELLKIICAFQLDTGLEY 101 (112)
T ss_dssp SSCCCTTTSCCCCTTTCBCC-----CSSSHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCcCCCCcCCHhhcCcc-----HHHHHHHHHHHHHHHHhccCccccc
Confidence 45789999999874 2221 1335677777888888887776543
No 5
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=87.83 E-value=0.21 Score=30.77 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.9
Q ss_pred CCCCcccccccccccCC
Q 031772 13 CRCPLCRRRITLLIPND 29 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~ 29 (153)
-+||+||++++.+.+..
T Consensus 41 ~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 41 PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CSTTTTCCCCCCEECCC
T ss_pred CcCcCCChhhHhhhhcc
Confidence 48999999999876654
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=85.29 E-value=0.27 Score=30.44 Aligned_cols=16 Identities=38% Similarity=1.115 Sum_probs=13.3
Q ss_pred CCCcccccccccccCC
Q 031772 14 RCPLCRRRITLLIPND 29 (153)
Q Consensus 14 ~CP~CR~~i~~L~p~~ 29 (153)
+||+||++++...|.+
T Consensus 53 ~CP~Cr~~~~~~~~~~ 68 (69)
T 2kiz_A 53 KCPICRVDIEAQLPSE 68 (69)
T ss_dssp BCTTTCSBSCSCCCCC
T ss_pred CCcCcCccccCcCCCC
Confidence 6999999999877653
No 7
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.64 E-value=0.33 Score=30.91 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCCCcccccccccccCC
Q 031772 13 CRCPLCRRRITLLIPND 29 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~ 29 (153)
-+||+||++|+..++.+
T Consensus 57 ~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 57 DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp SBCTTTCCBCCCCCBCC
T ss_pred CCCccCCceecCcEEEe
Confidence 47999999998766554
No 8
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=83.54 E-value=0.32 Score=31.02 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=13.9
Q ss_pred CCCCcccccccccccCC
Q 031772 13 CRCPLCRRRITLLIPND 29 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p~~ 29 (153)
-+||+||++|+..++.+
T Consensus 56 ~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 56 DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp SBCTTTCCBCSEEEECB
T ss_pred ccCCCcCcCccCcEEEe
Confidence 58999999998776554
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.18 E-value=0.32 Score=28.60 Aligned_cols=13 Identities=38% Similarity=1.048 Sum_probs=10.3
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-+||+||+++++
T Consensus 43 ~~~CP~Cr~~~~v 55 (55)
T 1iym_A 43 HSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCSSSCCCSCC
T ss_pred CCcCcCCCCEeEC
Confidence 4589999998763
No 10
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=82.09 E-value=0.47 Score=30.84 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=14.7
Q ss_pred CCCcccccccccccCCCc
Q 031772 14 RCPLCRRRITLLIPNDDS 31 (153)
Q Consensus 14 ~CP~CR~~i~~L~p~~~~ 31 (153)
+||+||++|+..++.+.+
T Consensus 51 ~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 51 SCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp BCTTTCCBCCEEEECBCT
T ss_pred cCCCCCchhhCeEEEEeC
Confidence 899999999987666543
No 11
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.87 E-value=0.68 Score=28.92 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.1
Q ss_pred CCCcccccccccccC
Q 031772 14 RCPLCRRRITLLIPN 28 (153)
Q Consensus 14 ~CP~CR~~i~~L~p~ 28 (153)
+||+||+++..+.+.
T Consensus 54 ~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 54 VCPLCNMPVLQLAQL 68 (74)
T ss_dssp BCTTTCCBCSSCCSC
T ss_pred cCCCcCccccccccc
Confidence 899999999876544
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.38 E-value=0.83 Score=28.29 Aligned_cols=14 Identities=29% Similarity=0.864 Sum_probs=11.4
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||++++.
T Consensus 56 ~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 56 GFFKCPLCKTSVRK 69 (73)
T ss_dssp SCCCCSSSCCCCCC
T ss_pred CCCCCCCCCCcCCc
Confidence 56789999998763
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.06 E-value=0.72 Score=28.07 Aligned_cols=12 Identities=50% Similarity=1.229 Sum_probs=9.9
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
.-+||+||++++
T Consensus 56 ~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 56 ANTCPTCRKKIN 67 (69)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCCCCCCCCccC
Confidence 458999999876
No 14
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.05 E-value=0.9 Score=27.20 Aligned_cols=14 Identities=29% Similarity=0.880 Sum_probs=11.3
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
...+||+||+++++
T Consensus 36 ~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 36 SGMQCPICQAPWPL 49 (56)
T ss_dssp SSSSCSSCCSSSSC
T ss_pred CCCCCCcCCcEeec
Confidence 35689999999875
No 15
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.67 E-value=0.73 Score=26.89 Aligned_cols=11 Identities=45% Similarity=1.102 Sum_probs=9.0
Q ss_pred CCCCccccccc
Q 031772 13 CRCPLCRRRIT 23 (153)
Q Consensus 13 ~~CP~CR~~i~ 23 (153)
.+||+||+++.
T Consensus 44 ~~CP~Cr~~~~ 54 (55)
T 2ecm_A 44 YRCPLCSGPSS 54 (55)
T ss_dssp CCCTTSCCSSC
T ss_pred CcCCCCCCcCC
Confidence 67999998764
No 16
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.55 E-value=0.75 Score=28.89 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=9.3
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
.-+||+||++++
T Consensus 60 ~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 60 NRTCPICRADSG 71 (75)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCcCcCcCCcCC
Confidence 347999998875
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=74.65 E-value=0.96 Score=29.37 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.6
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
..-+||.||++++.
T Consensus 49 ~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 49 ENGLCPACRKPYPE 62 (78)
T ss_dssp SCSBCTTTCCBCSS
T ss_pred CCCCCCCCCCccCC
Confidence 35689999999985
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=73.68 E-value=0.89 Score=28.64 Aligned_cols=12 Identities=42% Similarity=1.029 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-+||+||++++.
T Consensus 53 ~~CP~Cr~~~~~ 64 (78)
T 2ect_A 53 DSCPVCRKSLTG 64 (78)
T ss_dssp CSCTTTCCCCCC
T ss_pred CcCcCcCCccCC
Confidence 489999999885
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=72.91 E-value=0.97 Score=27.02 Aligned_cols=13 Identities=46% Similarity=1.086 Sum_probs=10.4
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-+||+||++++.
T Consensus 44 ~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 44 ANTCPTCRKKINH 56 (64)
T ss_dssp CSBCTTTCCBCTT
T ss_pred CCCCCCCCccCCc
Confidence 3489999999873
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.64 E-value=1.2 Score=27.25 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=10.9
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||++++.
T Consensus 49 ~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 49 SSPKCTACQESIVK 62 (66)
T ss_dssp SSCCCTTTCCCCCT
T ss_pred CcCCCCCCCcCCCh
Confidence 35689999998763
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=72.47 E-value=1 Score=27.69 Aligned_cols=11 Identities=45% Similarity=1.268 Sum_probs=9.6
Q ss_pred CCCCccccccc
Q 031772 13 CRCPLCRRRIT 23 (153)
Q Consensus 13 ~~CP~CR~~i~ 23 (153)
-+||+||++++
T Consensus 52 ~~CP~Cr~~~~ 62 (71)
T 3ng2_A 52 NTCPTCRKKIN 62 (71)
T ss_dssp SBCTTTCCBCC
T ss_pred CCCCCCCCccC
Confidence 48999999887
No 22
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.83 E-value=1 Score=29.00 Aligned_cols=13 Identities=38% Similarity=1.022 Sum_probs=10.1
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-.||+||+++..
T Consensus 64 ~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 64 NNRCPLCQQDWVV 76 (81)
T ss_dssp CCBCTTTCCBCCE
T ss_pred CCCCCCcCCCcch
Confidence 3479999998753
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.41 E-value=1.3 Score=28.32 Aligned_cols=14 Identities=29% Similarity=0.966 Sum_probs=11.3
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||+++..
T Consensus 55 ~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 55 NGVRCPFCSKITRI 68 (88)
T ss_dssp SCBCCTTTCCCBCC
T ss_pred CCcCCCCCCCcccc
Confidence 45799999998764
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.94 E-value=1.4 Score=26.76 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.8
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
..+||+||++++.
T Consensus 43 ~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 43 AGNCPECGTPLRK 55 (65)
T ss_dssp SSSCTTTCCCCSS
T ss_pred CCcCCCCCCcccc
Confidence 5689999999864
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=70.83 E-value=1.4 Score=27.60 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=11.8
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||++++.
T Consensus 52 ~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 52 GKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCSSSCCCCCS
T ss_pred CCCcCCCCCCcCCH
Confidence 47799999999874
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.54 E-value=1.2 Score=27.69 Aligned_cols=12 Identities=50% Similarity=1.030 Sum_probs=10.5
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-+||+||++++.
T Consensus 50 ~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 50 KRCALCRQEIPE 61 (71)
T ss_dssp SBCSSSCCBCCH
T ss_pred CcCcCcCchhCH
Confidence 689999999874
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=69.92 E-value=2.9 Score=27.55 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=10.4
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-+||.||++++.
T Consensus 58 ~~CP~Cr~~~~~ 69 (99)
T 2y43_A 58 TQCPTCCVTVTE 69 (99)
T ss_dssp CBCTTTCCBCCG
T ss_pred CCCCCCCCcCCh
Confidence 589999999875
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.20 E-value=1.6 Score=27.42 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=11.8
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||++++.
T Consensus 58 ~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 58 GESSCPVCRISYQP 71 (85)
T ss_dssp SCCCCTTTCCSSCS
T ss_pred CCCcCCCCCCccCH
Confidence 36799999999884
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=67.43 E-value=1.3 Score=29.55 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=10.2
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-.||+||++++.
T Consensus 59 ~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 59 AQCPHCRAPLQL 70 (100)
T ss_dssp SBCTTTCCBCCG
T ss_pred CCCCCCCCcCCH
Confidence 589999999863
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.24 E-value=1.7 Score=27.33 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=11.7
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+..+||+||++++.
T Consensus 58 ~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 58 GKGNCPVCRVPYPF 71 (85)
T ss_dssp SCBCCTTTCCCCCT
T ss_pred CCCCCCCCCCcCCH
Confidence 46899999999874
No 31
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.03 E-value=2.2 Score=26.46 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=10.6
Q ss_pred CCCCccccccccc
Q 031772 13 CRCPLCRRRITLL 25 (153)
Q Consensus 13 ~~CP~CR~~i~~L 25 (153)
-+||+||++++.-
T Consensus 51 ~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 51 NRCPKCNIVVHQT 63 (72)
T ss_dssp SSCTTTCCCCCSS
T ss_pred CcCCCcCcccCcc
Confidence 5899999998763
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=66.74 E-value=1.5 Score=30.99 Aligned_cols=13 Identities=38% Similarity=1.060 Sum_probs=10.3
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-+||+||++++.
T Consensus 87 ~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 87 KIECPICRKDIKS 99 (138)
T ss_dssp CSBCTTTCCBCCC
T ss_pred CCcCCCCCCcCCC
Confidence 3479999999864
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.54 E-value=1.3 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.5
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+.-+||+||++++.
T Consensus 47 ~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 47 RHRNCPICRLQMTG 60 (70)
T ss_dssp CCSSCHHHHHCTTC
T ss_pred CcCcCCCcCCcccC
Confidence 45689999999874
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=65.05 E-value=3.6 Score=27.54 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=11.1
Q ss_pred CCCCccccccccc
Q 031772 13 CRCPLCRRRITLL 25 (153)
Q Consensus 13 ~~CP~CR~~i~~L 25 (153)
.+||.||++++.-
T Consensus 51 ~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 51 KYCPICDVQVHKT 63 (108)
T ss_dssp SBCTTTCCBSCSS
T ss_pred CcCcCCCcccccc
Confidence 6899999998864
No 35
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.96 E-value=2.2 Score=27.06 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.2
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
.-.||+||++++
T Consensus 49 ~~~CP~Cr~~~~ 60 (81)
T 2csy_A 49 TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCCBCC
T ss_pred CCcCCCcCcccc
Confidence 347999999997
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.99 E-value=2.5 Score=28.66 Aligned_cols=13 Identities=46% Similarity=1.193 Sum_probs=11.2
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
..+||.||++++.
T Consensus 50 ~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 50 SLCCPFCRRRVSS 62 (115)
T ss_dssp TSBCTTTCCBCHH
T ss_pred cCCCCCCCcccCc
Confidence 4689999999985
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.81 E-value=2.4 Score=28.54 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=12.1
Q ss_pred CCCCCCccccccccc
Q 031772 11 QACRCPLCRRRITLL 25 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L 25 (153)
..-.||+||..+...
T Consensus 81 ~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 81 GSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCBCTTTCCBSSSC
T ss_pred CCCcCCCCCCccCCC
Confidence 456899999988765
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=60.72 E-value=1.5 Score=31.81 Aligned_cols=12 Identities=33% Similarity=1.096 Sum_probs=10.2
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
...||+||.+++
T Consensus 90 ~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 90 NKECPTCRKKLV 101 (165)
T ss_dssp CCBCTTTCCBCC
T ss_pred cCCCCCCCCcCC
Confidence 467999999985
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=60.29 E-value=2.8 Score=28.87 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.3
Q ss_pred CCCCCCcccccccc
Q 031772 11 QACRCPLCRRRITL 24 (153)
Q Consensus 11 ~~~~CP~CR~~i~~ 24 (153)
+...||.||++++.
T Consensus 86 ~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 86 QVFSCPACRYDLGR 99 (124)
T ss_dssp TCCBCTTTCCBCCT
T ss_pred CcCCCCCCCccCCC
Confidence 34589999999875
No 40
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=57.89 E-value=3.4 Score=25.82 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.0
Q ss_pred CCCCCcccccc
Q 031772 12 ACRCPLCRRRI 22 (153)
Q Consensus 12 ~~~CP~CR~~i 22 (153)
..+||+||+++
T Consensus 52 ~~~CP~Cr~~~ 62 (74)
T 2yur_A 52 EHTCPTCHQND 62 (74)
T ss_dssp SSCCSSSCCSS
T ss_pred CCcCCCCCCcC
Confidence 46899999964
No 41
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=56.59 E-value=3.6 Score=25.68 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=10.8
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-+||.||++++.
T Consensus 43 ~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 43 HKTCPKSQETLLH 55 (78)
T ss_dssp CCBCTTTCCBCSS
T ss_pred cCCCCCCcCCCCh
Confidence 5689999999864
No 42
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=54.63 E-value=74 Score=24.79 Aligned_cols=89 Identities=22% Similarity=0.376 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCchhHHHHhhHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhccCCcCCc
Q 031772 37 DPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAMIFSAVYIFSPIDIIPE 116 (153)
Q Consensus 37 d~~~~~v~~~i~~YNr~fs~~~~~~~~~~~l~~~p~l~~~l~~~~~~~~~~~~~~~~~r~~~~i~~al~Y~isP~D~IPd 116 (153)
.++.+.+-|++|++- ....+...+..+-.+|+|..+++-++.+. .-....+...++|++ |
T Consensus 102 apF~~~LAE~VE~~l--~g~~~~~~~~~~~~~~l~r~l~~~l~~l~-----------~~l~~~l~ll~L~f~-----I-- 161 (249)
T 3tx3_A 102 APFNGLLAEKVERYE--SGESLGDEGFLGLFKDIPRTLKREMQKLM-----------YYIPRALGFFLLSLV-----I-- 161 (249)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCTTCSSGGGSSSHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-----S--
T ss_pred HHhhHHHHHHHHHHH--cCCCCCccchhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhc-----c--
Confidence 567788888888743 22222112334456777766665444321 000112222233331 3
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031772 117 ALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHG 151 (153)
Q Consensus 117 ~i~g~lG~lDD~~v~~~~l~~v~~~yr~~~~~r~~ 151 (153)
|++|. ++-.++---.++..|-++-.+|||
T Consensus 162 ---P~vg~---vl~~~~~~~~lg~ey~d~~~~r~~ 190 (249)
T 3tx3_A 162 ---PVIGQ---VLWYIFVCWMMSIQYLDYPFDNHK 190 (249)
T ss_dssp ---TTHHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---chHHH---HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34565 333333444566778888888886
No 43
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=52.68 E-value=4.4 Score=26.09 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.9
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
...||.||++++
T Consensus 50 ~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 50 EHTCPTCHQNDV 61 (92)
T ss_dssp TCCCTTTCCSSC
T ss_pred CCcCcCCCCcCC
Confidence 468999999864
No 44
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.90 E-value=6.6 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.529 Sum_probs=11.7
Q ss_pred CCCCCcccccccccc
Q 031772 12 ACRCPLCRRRITLLI 26 (153)
Q Consensus 12 ~~~CP~CR~~i~~L~ 26 (153)
...||+||+++.+-.
T Consensus 58 ~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 58 TRCCELCKYEFIMET 72 (80)
T ss_dssp CSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeeecCc
Confidence 458999999987643
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=49.70 E-value=4.7 Score=27.30 Aligned_cols=12 Identities=42% Similarity=1.110 Sum_probs=10.3
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-+||.||++++.
T Consensus 49 ~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 49 NTCPTCRKKINH 60 (133)
T ss_dssp SBCTTTCCBCTT
T ss_pred CCCCCCCCcCcc
Confidence 489999999874
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=48.14 E-value=15 Score=24.82 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=9.4
Q ss_pred CCCCccccccc
Q 031772 13 CRCPLCRRRIT 23 (153)
Q Consensus 13 ~~CP~CR~~i~ 23 (153)
.+||.||++++
T Consensus 56 ~~CP~Cr~~~~ 66 (117)
T 1jm7_B 56 TGCPVCYTPAW 66 (117)
T ss_dssp TBCSSSCCBCS
T ss_pred CCCcCCCCcCc
Confidence 57999999974
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=47.48 E-value=5.1 Score=27.31 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q 031772 14 RCPLCRRRITL 24 (153)
Q Consensus 14 ~CP~CR~~i~~ 24 (153)
+||+||++++.
T Consensus 55 ~CP~Cr~~~~~ 65 (118)
T 3hct_A 55 KCPVDNEILLE 65 (118)
T ss_dssp BCTTTCCBCCG
T ss_pred CCCCCCCCcCH
Confidence 89999998874
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=44.51 E-value=6 Score=26.68 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.5
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
.-+||+||++++.
T Consensus 58 ~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 58 GSYCPSCRYPCFP 70 (116)
T ss_dssp CSBCTTTCCBCCG
T ss_pred cCcCCCCCCCCCH
Confidence 3579999999875
No 49
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.80 E-value=31 Score=23.09 Aligned_cols=11 Identities=45% Similarity=1.286 Sum_probs=9.2
Q ss_pred CCCCccccccc
Q 031772 13 CRCPLCRRRIT 23 (153)
Q Consensus 13 ~~CP~CR~~i~ 23 (153)
-.||+|-+++.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 35999999887
No 50
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=43.09 E-value=4.5 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.969 Sum_probs=9.1
Q ss_pred CCCCCCcccccc
Q 031772 11 QACRCPLCRRRI 22 (153)
Q Consensus 11 ~~~~CP~CR~~i 22 (153)
-...||+|.|..
T Consensus 5 f~vqcpvcqq~m 16 (29)
T 3vhs_A 5 FQVQCPVCQQMM 16 (29)
T ss_dssp CEEECTTTCCEE
T ss_pred eeeeChHHHHhC
Confidence 357899999754
No 51
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.81 E-value=14 Score=23.65 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=11.3
Q ss_pred CCCCccccccccccc
Q 031772 13 CRCPLCRRRITLLIP 27 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p 27 (153)
-+||+||++...-.|
T Consensus 53 ~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 53 PRCPHCNDYWPHEIP 67 (74)
T ss_dssp CCCTTTCSCCCSCCC
T ss_pred CCCCCCcCcCCCCCC
Confidence 589999988765444
No 52
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=41.30 E-value=3.9 Score=26.23 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.3
Q ss_pred CCCCCCCcccccccc
Q 031772 10 LQACRCPLCRRRITL 24 (153)
Q Consensus 10 ~~~~~CP~CR~~i~~ 24 (153)
-++..||||.+.+.+
T Consensus 38 ~g~~~CpYCg~~f~l 52 (67)
T 2jrr_A 38 TGWVECPYCDCKYVL 52 (67)
T ss_dssp TSEEEETTTTEEEEE
T ss_pred CCeEECCCCCCEEEE
Confidence 368899999988765
No 53
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=40.22 E-value=8.4 Score=31.00 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.4
Q ss_pred CCCCCCCCccccccc
Q 031772 9 TLQACRCPLCRRRIT 23 (153)
Q Consensus 9 ~~~~~~CP~CR~~i~ 23 (153)
...|.+|+.|||.+.
T Consensus 15 ~~~~~~c~~c~q~ld 29 (268)
T 3epz_A 15 YFQGPKCIQCGQYLD 29 (268)
T ss_dssp ---CCBCTTTCCBTT
T ss_pred CCCCchhHHHHhhcc
Confidence 357999999999987
No 54
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=39.51 E-value=4.7 Score=27.11 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.8
Q ss_pred CCCCCCcccccc
Q 031772 11 QACRCPLCRRRI 22 (153)
Q Consensus 11 ~~~~CP~CR~~i 22 (153)
--+.|++||+++
T Consensus 44 ~~i~C~VCr~tF 55 (86)
T 1wvk_A 44 MSIQCKVCMQTF 55 (86)
T ss_dssp CCEEETTTTEEE
T ss_pred hCCCChHhHhhH
Confidence 357899999977
No 55
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=39.23 E-value=12 Score=26.10 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.4
Q ss_pred CCCCCCccccccccccc
Q 031772 11 QACRCPLCRRRITLLIP 27 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L~p 27 (153)
....||+|++-..+|--
T Consensus 31 ~~P~C~fc~~ak~lL~~ 47 (118)
T 2wul_A 31 EQPQCGFSNAVVQILRL 47 (118)
T ss_dssp SSBSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45679999999988743
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.88 E-value=13 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=12.6
Q ss_pred cccccC-CCCCCCCCCc--cccc
Q 031772 2 LVWDHG-STLQACRCPL--CRRR 21 (153)
Q Consensus 2 ~yW~~~-~~~~~~~CP~--CR~~ 21 (153)
+||+.+ ..-+...||+ |+..
T Consensus 37 ~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 37 RMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp HHHHHHHTTTCCBCCCSTTCCCC
T ss_pred HHHHHccCcCCCCCCCcCcCccc
Confidence 355543 2235789999 8865
No 57
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.84 E-value=8.9 Score=22.93 Aligned_cols=19 Identities=32% Similarity=0.889 Sum_probs=13.2
Q ss_pred CCCCCCCcccccccccccC
Q 031772 10 LQACRCPLCRRRITLLIPN 28 (153)
Q Consensus 10 ~~~~~CP~CR~~i~~L~p~ 28 (153)
+--++||+|--+|-.-++.
T Consensus 21 lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 21 LPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp CSSSCCTTTCCSCEECCCC
T ss_pred CCCcccCccCcEEEEEecC
Confidence 4578999998666554443
No 58
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.89 E-value=12 Score=23.60 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=11.5
Q ss_pred CCCCCCCccccccc
Q 031772 10 LQACRCPLCRRRIT 23 (153)
Q Consensus 10 ~~~~~CP~CR~~i~ 23 (153)
..+++||.|.-+|=
T Consensus 36 ~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 36 KEVIRCRECGHRVM 49 (63)
T ss_dssp SSCCCCSSSCCCCC
T ss_pred CCceECCCCCcEEE
Confidence 46899999998764
No 59
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=35.72 E-value=6.3 Score=31.69 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=9.2
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
-.+|||||+--.
T Consensus 156 Dp~CPYCkkl~~ 167 (273)
T 3tdg_A 156 DPMCPHCQKELT 167 (273)
T ss_dssp CTTCHHHHHHHH
T ss_pred CcCChhHHHHHH
Confidence 468999997544
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=35.18 E-value=12 Score=24.98 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=10.0
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-.||+||++++.
T Consensus 58 ~~cP~~~~~l~~ 69 (98)
T 1wgm_A 58 QTDPFNRSPLTM 69 (98)
T ss_dssp CBCTTTCSBCCT
T ss_pred CCCCCCCCCCCh
Confidence 489999998874
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=33.26 E-value=13 Score=24.81 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.5
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
...||.||++++.
T Consensus 63 ~~~cP~~~~~l~~ 75 (100)
T 2kre_A 63 SPTDPFNRQTLTE 75 (100)
T ss_dssp CSBCSSSCCBCCT
T ss_pred CCCCCCCCCCCCh
Confidence 3589999998774
No 62
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=33.19 E-value=8.3 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=11.9
Q ss_pred CCCCCCCcccccccc
Q 031772 10 LQACRCPLCRRRITL 24 (153)
Q Consensus 10 ~~~~~CP~CR~~i~~ 24 (153)
-++..||||-..+.+
T Consensus 51 ~g~~~CpYCg~~f~l 65 (80)
T 2jvm_A 51 TGFVECGYCDRRYIH 65 (80)
T ss_dssp TCEEECSSSSCEEEE
T ss_pred CCeEECCCCCCEEEe
Confidence 367899999987754
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.04 E-value=11 Score=30.33 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=14.5
Q ss_pred cccccCCCCCCCCCCc--ccccccc
Q 031772 2 LVWDHGSTLQACRCPL--CRRRITL 24 (153)
Q Consensus 2 ~yW~~~~~~~~~~CP~--CR~~i~~ 24 (153)
+||+.+ +..+||. ||++++.
T Consensus 211 ~~~~~~---~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 211 NYLQGY---TTRDCPQAACSQVVSM 232 (267)
T ss_dssp HHSTTC---SCEECSGGGCSCEECG
T ss_pred HHHHhC---CCCCCCcccccCcCch
Confidence 467753 4478999 9997764
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=31.65 E-value=16 Score=22.16 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=10.1
Q ss_pred CCCCCcccccccc
Q 031772 12 ACRCPLCRRRITL 24 (153)
Q Consensus 12 ~~~CP~CR~~i~~ 24 (153)
...||+|+.++.+
T Consensus 47 ~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 47 NTACQICGVVYNT 59 (60)
T ss_dssp CSBCTTTCCBCCC
T ss_pred CCccCCCCCeeec
Confidence 4689999988753
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.99 E-value=8 Score=25.16 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=13.9
Q ss_pred cccccC---CCCCCCCCCc--cccc
Q 031772 2 LVWDHG---STLQACRCPL--CRRR 21 (153)
Q Consensus 2 ~yW~~~---~~~~~~~CP~--CR~~ 21 (153)
+||+.. ....+++||. |++.
T Consensus 37 ~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 37 QYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp HHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred HHHHHHhhcCCcccccCccccCCCC
Confidence 466643 2236899999 9987
No 66
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=29.60 E-value=9 Score=27.34 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=8.9
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
-..||+||+--.
T Consensus 23 D~~Cp~C~~~~~ 34 (147)
T 3gv1_A 23 DPDCPFCKRLEH 34 (147)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCChhHHHHHH
Confidence 458999997443
No 67
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=29.44 E-value=49 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=9.6
Q ss_pred CCCCcccccccc
Q 031772 13 CRCPLCRRRITL 24 (153)
Q Consensus 13 ~~CP~CR~~i~~ 24 (153)
-.||.||++++.
T Consensus 49 ~~cP~~~~~l~~ 60 (85)
T 2kr4_A 49 PTDPFNRQMLTE 60 (85)
T ss_dssp SBCTTTCCBCCG
T ss_pred CCCCCCcCCCCh
Confidence 579999988764
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=28.58 E-value=16 Score=25.22 Aligned_cols=13 Identities=23% Similarity=0.616 Sum_probs=10.9
Q ss_pred CCCCccccccccc
Q 031772 13 CRCPLCRRRITLL 25 (153)
Q Consensus 13 ~~CP~CR~~i~~L 25 (153)
-.||+||++|.-+
T Consensus 38 k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 38 KMCPGCSDPVQRI 50 (101)
T ss_dssp CBCTTTCCBCSEE
T ss_pred CCCcCcCCeeeee
Confidence 4799999999864
No 69
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.98 E-value=13 Score=19.62 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=7.0
Q ss_pred CCCCccccc
Q 031772 13 CRCPLCRRR 21 (153)
Q Consensus 13 ~~CP~CR~~ 21 (153)
-+||.|+.+
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 479999954
No 70
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=27.96 E-value=16 Score=26.23 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=9.7
Q ss_pred CCCcccccccc
Q 031772 14 RCPLCRRRITL 24 (153)
Q Consensus 14 ~CP~CR~~i~~ 24 (153)
+||.||++++.
T Consensus 55 ~CP~Cr~~~~~ 65 (170)
T 3hcs_A 55 KCPVDNEILLE 65 (170)
T ss_dssp BCTTTCCBCCG
T ss_pred CCCCCccCcch
Confidence 89999998875
No 71
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.53 E-value=16 Score=20.15 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=8.8
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
.--||.|.....
T Consensus 5 GFiCP~C~~~l~ 16 (34)
T 3mjh_B 5 GFICPQCMKSLG 16 (34)
T ss_dssp EEECTTTCCEES
T ss_pred ccCCcHHHHHcC
Confidence 457999986654
No 72
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.52 E-value=23 Score=16.10 Aligned_cols=12 Identities=25% Similarity=1.018 Sum_probs=8.6
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..++
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 2m0e_A 2 EHKCPHCDKKFN 13 (29)
T ss_dssp CCCCSSCCCCCC
T ss_pred CCcCCCCCcccC
Confidence 567999876554
No 73
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=27.35 E-value=10 Score=26.60 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=6.7
Q ss_pred CCCCcccc
Q 031772 13 CRCPLCRR 20 (153)
Q Consensus 13 ~~CP~CR~ 20 (153)
-.||+|++
T Consensus 31 y~Cp~C~~ 38 (184)
T 4dvc_A 31 FYCPHCNT 38 (184)
T ss_dssp TTCHHHHH
T ss_pred CCCHhHHH
Confidence 47999986
No 74
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.65 E-value=14 Score=24.26 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=13.4
Q ss_pred CCCCCCcccccccccccC
Q 031772 11 QACRCPLCRRRITLLIPN 28 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L~p~ 28 (153)
..-.||+|++--.+|-..
T Consensus 10 s~~~Cp~C~~aK~~L~~~ 27 (92)
T 2lqo_A 10 TTSWCGYCLRLKTALTAN 27 (92)
T ss_dssp ECTTCSSHHHHHHHHHHT
T ss_pred cCCCCHhHHHHHHHHHhc
Confidence 345799999888877543
No 75
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=25.61 E-value=12 Score=23.57 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=12.3
Q ss_pred CCCCCCcccccccccc
Q 031772 11 QACRCPLCRRRITLLI 26 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L~ 26 (153)
....||+|++-..+|-
T Consensus 10 ~~~~Cp~C~~ak~~L~ 25 (87)
T 1aba_A 10 NIHKCGPCDNAKRLLT 25 (87)
T ss_dssp TTSCCHHHHHHHHHHH
T ss_pred CCCcCccHHHHHHHHH
Confidence 4458999998877763
No 76
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.57 E-value=24 Score=17.50 Aligned_cols=14 Identities=29% Similarity=0.918 Sum_probs=11.0
Q ss_pred CCCCCCCccccccc
Q 031772 10 LQACRCPLCRRRIT 23 (153)
Q Consensus 10 ~~~~~CP~CR~~i~ 23 (153)
-.|-+|+.|-..++
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 36889999987665
No 77
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=25.43 E-value=15 Score=24.51 Aligned_cols=15 Identities=13% Similarity=0.272 Sum_probs=12.1
Q ss_pred CCCCccccccccccc
Q 031772 13 CRCPLCRRRITLLIP 27 (153)
Q Consensus 13 ~~CP~CR~~i~~L~p 27 (153)
-.||+|++-..+|--
T Consensus 31 p~Cp~C~~ak~~L~~ 45 (109)
T 3ipz_A 31 PMCGFSNTVVQILKN 45 (109)
T ss_dssp BSSHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 479999998888743
No 78
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.16 E-value=28 Score=15.86 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=8.5
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..++
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 567888876654
No 79
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=23.96 E-value=18 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.843 Sum_probs=10.9
Q ss_pred CCCCCCccccccc
Q 031772 11 QACRCPLCRRRIT 23 (153)
Q Consensus 11 ~~~~CP~CR~~i~ 23 (153)
...+||.|.++++
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 4568999999986
No 80
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=23.70 E-value=18 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.6
Q ss_pred CCCCCCCcccccccc
Q 031772 10 LQACRCPLCRRRITL 24 (153)
Q Consensus 10 ~~~~~CP~CR~~i~~ 24 (153)
-+...||||...+.+
T Consensus 46 ~g~~~CpYCg~~y~~ 60 (87)
T 2jz8_A 46 TDEKICPYCSTLYRY 60 (87)
T ss_dssp CCEECCTTTCCEEEC
T ss_pred CCeEECCCCCCEeEc
Confidence 367899999977653
No 81
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.67 E-value=80 Score=21.09 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=16.9
Q ss_pred CCCCCCcccccccccccCCCcccccCChHHHHHHHHHHHH
Q 031772 11 QACRCPLCRRRITLLIPNDDSLRQRHDPAVGDILQKVESY 50 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L~p~~~~~~~~~d~~~~~v~~~i~~Y 50 (153)
.-..||.|.- ++..+-+.+...+++.+|.+-
T Consensus 22 ~~LRCpvCqn---------qsI~dSnA~iA~dlR~~Vre~ 52 (90)
T 2kw0_A 22 EELRCPKCQN---------NSIADSNSMIATDLRQKVYEL 52 (90)
T ss_dssp HSSBCSCTTS---------CTTTSCCCHHHHHHHHHHHHH
T ss_pred HcCcCCCCCC---------CchhhcCcHHHHHHHHHHHHH
Confidence 3578999973 232233345555566555443
No 82
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.50 E-value=19 Score=16.51 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=8.2
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..++
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 567888876554
No 83
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=22.93 E-value=2.4e+02 Score=20.97 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhccC---C-cCCccchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031772 98 IAMIFSAVYIFSPI---D-IIPEALLGI-VGLLDDLLIALLCFLHVAALYRAVLYN 148 (153)
Q Consensus 98 ~~i~~al~Y~isP~---D-~IPd~i~g~-lG~lDD~~v~~~~l~~v~~~yr~~~~~ 148 (153)
+..++.+..++.|- + ++||....+ ..++.|++-++.++.-+.-++||....
T Consensus 61 ~l~~g~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~G~~~l~~RR~~~~ 116 (225)
T 1q16_C 61 GIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCLIGGVLLLKRRLFSP 116 (225)
T ss_dssp HHHHHHHHHHHSCTTC-CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhhHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34445544445454 3 367744455 888999999999988888999988644
No 84
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.59 E-value=32 Score=15.69 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=8.4
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..+.
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1klr_A 2 TYQCQYCEFRSA 13 (30)
T ss_dssp CCCCSSSSCCCS
T ss_pred CccCCCCCCccC
Confidence 567888876554
No 85
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.02 E-value=29 Score=15.62 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=7.6
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..+.
T Consensus 1 ~~~C~~C~k~f~ 12 (27)
T 1znf_A 1 XYKCGLCERSFV 12 (27)
T ss_dssp -CBCSSSCCBCS
T ss_pred CccCCCCCCcCC
Confidence 347888876554
No 86
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.60 E-value=19 Score=16.35 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=8.6
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..++
T Consensus 2 p~~C~~C~k~f~ 13 (26)
T 2lvu_A 2 PYVCERCGKRFV 13 (26)
Confidence 557888887655
No 87
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=21.97 E-value=24 Score=22.35 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 031772 37 DPAVGDILQKVESYNRIF 54 (153)
Q Consensus 37 d~~~~~v~~~i~~YNr~f 54 (153)
+++.+++.+.+++.+++=
T Consensus 49 ~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 49 KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666666544
No 88
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.68 E-value=16 Score=27.41 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=7.2
Q ss_pred CCCCccccc
Q 031772 13 CRCPLCRRR 21 (153)
Q Consensus 13 ~~CP~CR~~ 21 (153)
-.||+|++-
T Consensus 25 ~~Cp~C~~~ 33 (205)
T 3gmf_A 25 YTCPHCSHF 33 (205)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 479999963
No 89
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.30 E-value=31 Score=20.65 Aligned_cols=17 Identities=18% Similarity=0.426 Sum_probs=14.1
Q ss_pred CCCCCCccccccccccc
Q 031772 11 QACRCPLCRRRITLLIP 27 (153)
Q Consensus 11 ~~~~CP~CR~~i~~L~p 27 (153)
.+-.||-|-..++++-|
T Consensus 11 ~~~~CPrCn~~f~~~~s 27 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEA 27 (49)
T ss_dssp SCCCCTTTCCCCSSHHH
T ss_pred CceeCCcccccccchHH
Confidence 67889999999987644
No 90
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12 E-value=34 Score=16.72 Aligned_cols=14 Identities=14% Similarity=0.591 Sum_probs=10.9
Q ss_pred CCCCCCCccccccc
Q 031772 10 LQACRCPLCRRRIT 23 (153)
Q Consensus 10 ~~~~~CP~CR~~i~ 23 (153)
-.+-+|+.|-..++
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 36889999987664
No 91
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=21.07 E-value=14 Score=26.18 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=9.6
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
..+||.||+++.
T Consensus 66 ~~~CP~Cr~~~~ 77 (141)
T 3knv_A 66 PQNCAACVHEGI 77 (141)
T ss_dssp CEECHHHHHTTC
T ss_pred CCCCCCCCCccc
Confidence 358999999874
No 92
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.35 E-value=21 Score=16.60 Aligned_cols=12 Identities=33% Similarity=1.162 Sum_probs=8.8
Q ss_pred CCCCCccccccc
Q 031772 12 ACRCPLCRRRIT 23 (153)
Q Consensus 12 ~~~CP~CR~~i~ 23 (153)
|-+|+.|-..++
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2lvt_A 2 PCQCVMCGKAFT 13 (29)
Confidence 567889987655
No 93
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.76 E-value=50 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=17.0
Q ss_pred cccccCCCCCCCCCCcccccccccc
Q 031772 2 LVWDHGSTLQACRCPLCRRRITLLI 26 (153)
Q Consensus 2 ~yW~~~~~~~~~~CP~CR~~i~~L~ 26 (153)
.+|.... ..-.|+.|.++++++-
T Consensus 6 ~~W~pd~--~~~~C~~C~~~F~~~~ 28 (84)
T 1x4u_A 6 SGRYPTN--NFGNCTGCSATFSVLK 28 (84)
T ss_dssp CCSCSCC--CCSSCSSSCCCCCSSS
T ss_pred CccccCC--CCCcCcCcCCccccch
Confidence 3566554 4568999999998764
No 94
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.64 E-value=28 Score=23.66 Aligned_cols=10 Identities=30% Similarity=1.148 Sum_probs=8.2
Q ss_pred CCCCCccccc
Q 031772 12 ACRCPLCRRR 21 (153)
Q Consensus 12 ~~~CP~CR~~ 21 (153)
.++||.|...
T Consensus 2 ~M~Cp~Cg~~ 11 (133)
T 3o9x_A 2 HMKCPVCHQG 11 (133)
T ss_dssp CCBCTTTSSS
T ss_pred CcCCCcCCCC
Confidence 4799999865
Done!