BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031773
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 3/129 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 144
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GGQSV+H+H+H+LG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
Query: 145 GRQMNWPPG 153
GRQMNWPPG
Sbjct: 118 GRQMNWPPG 126
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 3/129 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 144
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GGQSV+H+H+H+LG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
Query: 145 GRQMNWPPG 153
GRQMNWPPG
Sbjct: 118 GRQMNWPPG 126
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 3/129 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 144
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GGQSV+H+H+H+LG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
Query: 145 GRQMNWPPG 153
GRQMNWPPG
Sbjct: 118 GRQMNWPPG 126
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%), Gaps = 3/129 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 144
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GGQSV+H+H+H+LG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLG 117
Query: 145 GRQMNWPPG 153
GRQMNWPPG
Sbjct: 118 GRQMNWPPG 126
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 24 VMASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83
+MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 2 LMADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKK 60
Query: 84 KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GGQSV+H+H+H+L
Sbjct: 61 H--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVL 118
Query: 144 GGRQMNWPPG 153
GGRQM+WPPG
Sbjct: 119 GGRQMHWPPG 128
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 90/129 (69%), Gaps = 3/129 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLG 144
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GGQSV+H+H+H+LG
Sbjct: 60 --ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLG 117
Query: 145 GRQMNWPPG 153
GRQM+WPPG
Sbjct: 118 GRQMHWPPG 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK ++ +S AE+ +L
Sbjct: 6 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 63
Query: 102 GRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 153
G L+ K A GL+ G+R+V+N+G +GGQSV+H+H+H+LGGRQMNWPPG
Sbjct: 64 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 115
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 89/128 (69%), Gaps = 3/128 (2%)
Query: 26 ASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD 85
A E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 2 ADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH- 59
Query: 86 GLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 145
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GGQSV+H+H+H+LGG
Sbjct: 60 -ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGG 118
Query: 146 RQMNWPPG 153
RQM+WPPG
Sbjct: 119 RQMHWPPG 126
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 89/128 (69%), Gaps = 3/128 (2%)
Query: 26 ASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD 85
A E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 ADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH- 58
Query: 86 GLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 145
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GGQSV+H+H+H+LGG
Sbjct: 59 -ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGG 117
Query: 146 RQMNWPPG 153
RQM+WPPG
Sbjct: 118 RQMHWPPG 125
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 3/106 (2%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP + AE H + L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE--HEQAL 62
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGR 146
GR++ A +A+QEG+ EDG+R+++N +GGQ V+HIH+HLLGGR
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR 108
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 106 bits (265), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 3/109 (2%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KI K+IPS +VYEDD++ AF+DI+P AP HIL+IP K + L++ E + +
Sbjct: 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIP--KQHIASLNEITEENEAFI 66
Query: 102 GRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNW 150
G++LY L+ K+E E G+R+V N G + GQ+V HIH H+LGG+++ W
Sbjct: 67 GKVLYKVSLIGKKECPE-GYRVVNNIGEDAGQTVKHIHFHILGGKKLAW 114
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 3/106 (2%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP + AE H + L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE--HEQAL 62
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGGR 146
GR++ A +A+QEG+ EDG+R+++N +GGQ V+HI +HLLGGR
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGR 108
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
+F KII +E+PS + YED++V+A +DI+P AP H+LIIP K+ + + + E + +IL
Sbjct: 37 CVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIP--KEHIANVKEINESNAQIL 94
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLGG 145
+ A VA+ G+ E G+R++ N G GQ+VFH+H HLLGG
Sbjct: 95 IDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG 139
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KI N EIPS VYEDD+VLAF D++P AP HIL++P K L ++ +I+
Sbjct: 6 CIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVP--KKHYDSLIDIPDKEMDIV 63
Query: 102 GRLLYTAKLVAKQEGLED-GFRIVINDGPNGGQSVFHIHVHLLGGRQM-NWPPG 153
+ +AK++G + GFR++ N G +GGQ V H+H H+L G+++ N+ G
Sbjct: 64 SHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 39 DSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHC 98
D+ IF K+I EIPS VYEDD V+AF DI PQAP H L+IPK K L E
Sbjct: 27 DNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPK-KGSRNLLDADTETLF 85
Query: 99 EILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
++ + AK V K+ DG ++ + Q+V+H+H H++
Sbjct: 86 PVIKAVQKIAKAV-KKAFQADGITVMQFNEAASQQTVYHLHFHII 129
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MAS S + +F KI+ +IPS VYED+ VLAF DI H L+IPK +
Sbjct: 21 MASMTGGQQMGRGSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPK-E 79
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
L + + + R+ A+ + K DG I+ N+ GQ+VFH HVHL+
Sbjct: 80 HVRNALEMTQTQAANLFARIPKIARALQKATK-ADGLNIINNNEETAGQTVFHAHVHLV 137
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV-KDGLTGLSKAEERHCEI 100
IF KII+ +I VYED+ VLAF DI H L+IPKV K + L+ EI
Sbjct: 11 CIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTP------EI 64
Query: 101 LGRLLYTAKLVA---KQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
+ +A K E GF ++ N+G GQ+VFH H+HL+
Sbjct: 65 ASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLI 110
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KII +IPS VYED+ VLAF DI H L+IPK T + E E+
Sbjct: 7 CIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPK-----THIENVYEFTDELA 61
Query: 102 GRLLYTAKLVA---KQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
+ + +A + E G + N+G GQSVFH H+H++
Sbjct: 62 KQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 106
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 44 FDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGR 103
F IIN+E+ VYED+K A D P + H L+IPK +A+E L +
Sbjct: 3 FCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPK--KHFENYLEADEDTLAELAK 60
Query: 104 LLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWP 151
++ L K DG R++ N G + GQ +FH+HVH++ + ++P
Sbjct: 61 VVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYP 108
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 37 PSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEER 96
P +IF KIIN+E+P + VYEDD V+AF I+P H L++P+ + + ++
Sbjct: 2 PGSMASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREE-----IDNWQDV 56
Query: 97 HCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMN 149
R++ ++L+ K + FR + G V H+HVH+ R ++
Sbjct: 57 DSAAFNRVMGVSQLIGK--AVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLS 107
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 37 PSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD-GLTGLSKAEE 95
P +F I++ + P+ +YED+ L DI P H L+IPK LT
Sbjct: 2 PGSMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETV 61
Query: 96 RHCEILGRLLYTAKLVAKQEGLE-DGFRIVINDGPNGGQSVFHIHVHLLGGRQ 147
+G+ + A A++ GL DG I INDG Q+VFHIH+H++ R
Sbjct: 62 AGMAAVGQRIARA---ARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRN 111
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KII +IP V E K LAF DI+P + H+L+IP K+ + L + +
Sbjct: 13 CIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIP--KEHASCLHELGMEDAADV 70
Query: 102 GRLLYTA-KLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL------GGRQMNW 150
G LL A + VA +G + ++ N+G Q V H+H H++ G ++ W
Sbjct: 71 GVLLAKASRAVAGPDGSMQ-YNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGW 125
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAK 113
+ ++YE D++ A D P + H L+IPK K EE L +L T + + +
Sbjct: 18 ANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE-----LSGVLDTIRHLVQ 72
Query: 114 QEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
+ G E + I+ N+G + Q VFH+H H++
Sbjct: 73 KFGFER-YNILQNNGNH--QEVFHVHFHVI 99
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 46 KIINKEIPS-KVVYEDDKVLAFRDIDPQAPTHILIIPK-VKDGLTGLSKAEERHCEILGR 103
K IP+ + Y F ++ P H+L+ PK V LT L+ AE I+ +
Sbjct: 300 KFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAK 359
Query: 104 LLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGR 146
+ ++ K + I + DG + GQ+V H+H+H+L R
Sbjct: 360 KV--QAMLEKHHNVTST-TICVQDGKDAGQTVPHVHIHILPRR 399
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAK--- 109
PS V + + A + P P H+L+ P L + + + + + L T +
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 110 LVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
V ++ + DGP GQ+V H+HVH+L
Sbjct: 67 TVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVL 100
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAK--- 109
PS V + + A + P P H+L+ P L + + + + + L T +
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 110 LVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
V ++ DGP GQ+V H+HVH+L
Sbjct: 67 TVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVL 100
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAK--- 109
PS V + + A + P P H+L+ P L + + + + + L T +
Sbjct: 12 PSVVFLKTELSFALVNRKPVVPGHVLVCP-----LRPVERFHDLRPDEVADLFQTTQRVG 66
Query: 110 LVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 143
V ++ + DGP GQ+V H++VH+L
Sbjct: 67 TVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVL 100
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 25 VIYYDDDVVLVRDMFPKSKMHLLLMTR 51
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 23 VIYYDDDVVLVRDMFPKSKMHLLLMTR 49
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 23 VIYYDDDVVLVRDMFPKSKMHLLLMTR 49
>pdb|2H0V|A Chain A, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
pdb|2H0V|B Chain B, Crystal Structure Of A Putative Quercetin 2,3-dioxygenase
(yxag, Bsu39980) From Bacillus Subtilis At 2.60 A
Resolution
Length = 338
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 109 KLVAKQEGLEDGFRIVINDGPNGGQSVFHIH------VHLLGGRQMNWPPG 153
++VA Q+ + F +V ++GP G + V H H + L G+ W G
Sbjct: 207 RIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQXTXWTDG 257
>pdb|1Y3T|A Chain A, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
pdb|1Y3T|B Chain B, Crystal Structure Of Yxag, A Dioxygenase From Bacillus
Subtilis
Length = 337
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 109 KLVAKQEGLEDGFRIVINDGPNGGQSVFHIH------VHLLGGRQMNWPPG 153
++VA Q+ + F +V ++GP G + V H H + L G+ W G
Sbjct: 206 RIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWTDG 256
>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
Length = 531
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 110 LVAKQEGLEDGFRIVINDGPNGG 132
LVA++EG D F + + GP GG
Sbjct: 317 LVAREEGCADDFILTVETGPIGG 339
>pdb|2AHU|A Chain A, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|B Chain B, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|C Chain C, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|D Chain D, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7
Length = 531
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 110 LVAKQEGLEDGFRIVINDGPNGG 132
LVA++EG D F + + GP GG
Sbjct: 317 LVAREEGCADDFILTVETGPIGG 339
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 30 EAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTG 89
E A+ + + T+ D+++ KE+ ++ E KVL D +L + K+ GL
Sbjct: 169 ERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE----DVTGEEFVLFM-KILSGLKS 223
Query: 90 LSKAEERHCEILGRLLYTAKLVAKQEGLEDGF 121
L R +LVA+Q LE F
Sbjct: 224 LQTVSGRQ--------QLVELVAEQADLEQTF 247
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 4 ENISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDK------------IINKE 51
E + T R+ +L + V E+ V PSD P+ D+ IIN +
Sbjct: 35 EGLVKTGERV-ILATDSERVKEVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDVDLIINYQ 93
Query: 52 IPSKVVYEDDKVLAFRDID 70
VYE+D L FR+++
Sbjct: 94 GDEPFVYEEDIKLIFRELE 112
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 87 LTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG 128
LT S E R+ G L Y + V K E LEDG +VI +G
Sbjct: 288 LTTFSIVESRY---RGDLAYFVESVRKIEELEDGDTVVIMEG 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,518,950
Number of Sequences: 62578
Number of extensions: 179704
Number of successful extensions: 493
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 45
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)