Query 031773
Match_columns 153
No_of_seqs 186 out of 1151
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275 Zinc-binding protein o 100.0 1.4E-37 3.1E-42 213.6 12.4 125 27-153 3-127 (127)
2 PRK10687 purine nucleoside pho 100.0 2.4E-34 5.2E-39 203.2 12.0 108 40-149 3-111 (119)
3 cd01276 PKCI_related Protein K 100.0 8.5E-33 1.8E-37 190.2 12.3 103 41-145 1-104 (104)
4 COG0537 Hit Diadenosine tetrap 100.0 4.6E-32 1E-36 196.0 12.9 104 40-148 1-107 (138)
5 cd01277 HINT_subgroup HINT (hi 100.0 2.8E-31 6.2E-36 181.9 12.4 103 41-145 1-103 (103)
6 PRK11720 galactose-1-phosphate 100.0 6.4E-31 1.4E-35 215.0 11.7 130 15-146 169-303 (346)
7 cd01275 FHIT FHIT (fragile his 100.0 2.2E-30 4.9E-35 184.2 12.8 104 42-147 1-105 (126)
8 TIGR00209 galT_1 galactose-1-p 100.0 8E-31 1.7E-35 214.5 11.6 130 15-146 169-303 (347)
9 cd00608 GalT Galactose-1-phosp 100.0 6.9E-30 1.5E-34 208.0 11.0 130 15-146 159-295 (329)
10 PLN02643 ADP-glucose phosphory 100.0 1.1E-28 2.4E-33 201.2 11.9 127 15-147 173-304 (336)
11 cd01278 aprataxin_related apra 100.0 7.5E-28 1.6E-32 165.7 11.9 100 41-144 1-104 (104)
12 PF01230 HIT: HIT domain; Int 99.9 1.5E-27 3.2E-32 162.7 9.8 97 49-147 1-97 (98)
13 cd00468 HIT_like HIT family: H 99.9 1.6E-24 3.6E-29 143.5 9.9 83 57-144 1-86 (86)
14 KOG3379 Diadenosine polyphosph 99.9 1E-21 2.2E-26 138.9 10.7 93 54-148 17-109 (150)
15 PF11969 DcpS_C: Scavenger mRN 99.9 2.8E-22 6E-27 141.0 4.7 100 41-146 1-105 (116)
16 COG1085 GalT Galactose-1-phosp 99.8 5.2E-20 1.1E-24 148.9 8.4 127 13-144 158-291 (338)
17 PF02744 GalP_UDP_tr_C: Galact 99.8 1.5E-19 3.2E-24 134.5 6.1 113 30-144 2-119 (166)
18 KOG4359 Protein kinase C inhib 99.7 5.7E-17 1.2E-21 115.2 10.0 106 35-144 26-135 (166)
19 KOG2958 Galactose-1-phosphate 99.7 1.1E-16 2.4E-21 126.1 5.3 128 16-145 175-309 (354)
20 PF04677 CwfJ_C_1: Protein sim 99.2 4.6E-10 1E-14 79.4 11.6 99 38-145 9-108 (121)
21 KOG2476 Uncharacterized conser 98.7 2.4E-07 5.1E-12 77.8 11.2 100 38-146 317-417 (528)
22 KOG0562 Predicted hydrolase (H 98.6 2.8E-08 6E-13 73.0 3.8 87 54-145 15-105 (184)
23 PLN03103 GDP-L-galactose-hexos 97.7 0.00014 3E-09 60.8 7.9 73 59-144 167-241 (403)
24 KOG3969 Uncharacterized conser 97.7 0.0004 8.7E-09 55.2 9.6 89 53-146 159-257 (310)
25 KOG2477 Uncharacterized conser 97.6 0.00054 1.2E-08 58.6 9.3 101 39-145 406-507 (628)
26 cd00608 GalT Galactose-1-phosp 97.1 0.003 6.5E-08 51.8 8.1 64 76-144 95-161 (329)
27 KOG2720 Predicted hydrolase (H 96.6 0.0025 5.3E-08 52.3 4.0 72 59-143 165-237 (431)
28 PLN02643 ADP-glucose phosphory 96.6 0.021 4.5E-07 47.1 9.3 65 75-144 108-175 (336)
29 PRK05471 CDP-diacylglycerol py 96.4 0.025 5.5E-07 44.7 8.1 97 40-143 40-144 (252)
30 COG1085 GalT Galactose-1-phosp 96.3 0.023 5E-07 46.7 7.6 103 37-144 37-162 (338)
31 COG4360 APA2 ATP adenylyltrans 96.2 0.0077 1.7E-07 47.3 4.5 73 61-146 92-164 (298)
32 TIGR00672 cdh CDP-diacylglycer 96.1 0.034 7.3E-07 43.9 7.7 96 40-142 39-142 (250)
33 PF02611 CDH: CDP-diacylglycer 95.7 0.041 8.8E-07 42.8 6.6 80 57-143 29-115 (222)
34 COG5075 Uncharacterized conser 95.5 0.026 5.7E-07 44.4 4.6 88 52-144 153-250 (305)
35 PRK11720 galactose-1-phosphate 95.4 0.11 2.3E-06 43.1 8.3 65 75-144 106-171 (346)
36 TIGR00209 galT_1 galactose-1-p 95.1 0.22 4.8E-06 41.3 9.2 65 75-144 106-171 (347)
37 COG2134 Cdh CDP-diacylglycerol 93.1 0.8 1.7E-05 35.4 8.0 78 59-143 60-144 (252)
38 PF01087 GalP_UDP_transf: Gala 83.0 4 8.7E-05 30.5 5.6 64 76-144 112-178 (183)
39 PF14317 YcxB: YcxB-like prote 75.7 5.9 0.00013 23.2 3.8 25 56-84 24-48 (62)
40 PF01076 Mob_Pre: Plasmid reco 67.0 30 0.00065 26.1 6.7 34 110-147 110-143 (196)
41 PF03432 Relaxase: Relaxase/Mo 59.5 26 0.00056 26.7 5.2 36 103-144 73-109 (242)
42 PF00367 PTS_EIIB: phosphotran 47.8 11 0.00024 20.5 1.1 14 3-16 11-29 (35)
43 KOG2958 Galactose-1-phosphate 44.6 74 0.0016 26.2 5.6 118 21-141 27-173 (354)
44 PF01446 Rep_1: Replication pr 34.4 2.2E+02 0.0048 22.2 6.9 59 76-143 24-87 (233)
45 PRK13878 conjugal transfer rel 34.4 91 0.002 28.8 5.3 33 106-144 88-121 (746)
46 smart00538 POP4 A domain found 30.9 91 0.002 20.7 3.6 27 54-84 31-57 (92)
47 PF10372 YojJ: Bacterial membr 30.2 32 0.00069 21.9 1.2 24 24-47 21-44 (70)
48 PF06156 DUF972: Protein of un 29.9 23 0.00049 24.4 0.6 9 38-46 98-106 (107)
49 PRK03879 ribonuclease P protei 29.3 1E+02 0.0022 20.7 3.6 26 54-84 33-58 (96)
50 TIGR03793 TOMM_pelo TOMM prope 28.8 65 0.0014 20.8 2.5 21 74-99 52-72 (77)
51 TIGR01239 galT_2 galactose-1-p 28.4 2.3E+02 0.0049 24.8 6.4 110 22-145 150-278 (489)
52 KOG3256 NADH:ubiquinone oxidor 25.2 34 0.00074 25.7 0.8 29 20-49 92-120 (212)
53 cd01617 DCX Ubiquitin-like dom 24.9 1.2E+02 0.0026 19.3 3.3 28 62-91 2-29 (80)
54 COG1264 PtsG Phosphotransferas 24.0 25 0.00055 23.2 -0.1 16 3-18 14-34 (88)
55 PHA03073 late transcription fa 23.8 1E+02 0.0022 22.5 3.0 11 37-47 47-57 (150)
56 PF04134 DUF393: Protein of un 22.9 22 0.00049 23.8 -0.5 11 38-48 3-13 (114)
57 smart00537 DCX Domain in the D 22.8 97 0.0021 20.3 2.6 28 62-91 7-34 (89)
58 COG1943 Transposase and inacti 22.4 2.9E+02 0.0063 19.5 7.2 14 71-84 10-23 (136)
59 COG1655 Uncharacterized protei 22.2 67 0.0014 25.4 1.9 49 35-84 15-69 (267)
60 PF02893 GRAM: GRAM domain; I 21.9 1.7E+02 0.0036 17.6 3.5 42 43-84 19-61 (69)
61 PF12239 DUF3605: Protein of u 21.3 3.2E+02 0.0069 20.0 5.3 76 61-143 72-156 (158)
62 PF01868 UPF0086: Domain of un 20.9 1.8E+02 0.0039 19.1 3.6 27 54-84 32-58 (89)
63 PF11834 DUF3354: Domain of un 20.6 1.6E+02 0.0034 18.5 3.1 45 20-65 23-68 (69)
No 1
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-37 Score=213.64 Aligned_cols=125 Identities=62% Similarity=1.013 Sum_probs=115.8
Q ss_pred HHHHHhhhcCCCCCCceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHH
Q 031773 27 SENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLY 106 (153)
Q Consensus 27 ~~~~~~~~~~~~~~~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~ 106 (153)
.|.+.|+.-...++.|+||+|+++|+|..+|||||.++||.|..|.+|+|+|||||+| ++.++.+.+.+.+++++++.
T Consensus 3 ~e~~~a~~a~~~~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~h--i~~~s~aed~~~e~Lg~ll~ 80 (127)
T KOG3275|consen 3 SEVEKAQTAAAGAAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKH--ITQLSKAEDRDDELLGHLLP 80 (127)
T ss_pred chHHHHhhhcccCCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeeccc--ccchhhcccCCHHHHHHHHH
Confidence 3455555545558899999999999999999999999999999999999999999999 88888888888899999999
Q ss_pred HHHHHHHHhCCCCceEEEEecCCCCCCccceEEEEEeCCCCCCCCCC
Q 031773 107 TAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 153 (153)
Q Consensus 107 ~~~~~~~~~~~~~~~ni~~n~g~~~gq~v~HlHlHIIPr~~~~w~~~ 153 (153)
++|+++++++..+|||+.+|+|+.+.|+|+|+|+||+|++.++||+|
T Consensus 81 ~~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 81 VAKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred HHHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 99999999998899999999999999999999999999999999997
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=100.00 E-value=2.4e-34 Score=203.16 Aligned_cols=108 Identities=53% Similarity=0.951 Sum_probs=99.6
Q ss_pred CCceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhC-CC
Q 031773 40 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG-LE 118 (153)
Q Consensus 40 ~~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~-~~ 118 (153)
++|+||+|++|+.+..+|||||.++||+|.+|.++||+||+||+| +.++.||++++..++.++++.++++++..+ .+
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H--~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~ 80 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAE 80 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhH--hCChhHCChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 469999999999999999999999999999999999999999999 899999999988899999998888776543 46
Q ss_pred CceEEEEecCCCCCCccceEEEEEeCCCCCC
Q 031773 119 DGFRIVINDGPNGGQSVFHIHVHLLGGRQMN 149 (153)
Q Consensus 119 ~~~ni~~n~g~~~gq~v~HlHlHIIPr~~~~ 149 (153)
+|||+++|+|+.+||+|+|+|+|||||++++
T Consensus 81 ~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 81 DGYRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred CceEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 8999999999999999999999999998754
No 3
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=100.00 E-value=8.5e-33 Score=190.21 Aligned_cols=103 Identities=62% Similarity=0.998 Sum_probs=97.5
Q ss_pred CceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCC-CC
Q 031773 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-ED 119 (153)
Q Consensus 41 ~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~-~~ 119 (153)
+|+||+++++|.+.++||||+.++||+|.+|.+|||+||+||+| ++++.+|++++.+++.++++.++++.+.++. ++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H--~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKH--IASLSDATEEDEELLGHLLSAAAKVAKDLGIAED 78 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecce--eCChHHcccccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 49999999999999999999999999999999999999999999 8999999999999999999999989888763 67
Q ss_pred ceEEEEecCCCCCCccceEEEEEeCC
Q 031773 120 GFRIVINDGPNGGQSVFHIHVHLLGG 145 (153)
Q Consensus 120 ~~ni~~n~g~~~gq~v~HlHlHIIPr 145 (153)
+||+++|+|+.+||+++|||+|||+|
T Consensus 79 ~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 79 GYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 99999999999999999999999986
No 4
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.98 E-value=4.6e-32 Score=196.04 Aligned_cols=104 Identities=43% Similarity=0.669 Sum_probs=90.8
Q ss_pred CCceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh---C
Q 031773 40 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---G 116 (153)
Q Consensus 40 ~~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~---~ 116 (153)
+.|+||+++++|.+..+||||++++||+|.+|.+|||+|||||+| +.++.++++++ +++++..++++++++ .
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h--~~~l~~l~~~~---~~~l~~~~~~ia~al~~~~ 75 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRH--VSDLEDLDPEE---LAELFLLAQKIAKALKEAF 75 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccc--hhhhhhCCHHH---HHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999 89999998855 445555555555543 3
Q ss_pred CCCceEEEEecCCCCCCccceEEEEEeCCCCC
Q 031773 117 LEDGFRIVINDGPNGGQSVFHIHVHLLGGRQM 148 (153)
Q Consensus 117 ~~~~~ni~~n~g~~~gq~v~HlHlHIIPr~~~ 148 (153)
.++|||+++|+|..+||.++|+|+|||||+..
T Consensus 76 ~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 76 GADGYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred CCCceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 47899999999999999999999999999963
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.97 E-value=2.8e-31 Score=181.94 Aligned_cols=103 Identities=41% Similarity=0.569 Sum_probs=92.1
Q ss_pred CceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 031773 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDG 120 (153)
Q Consensus 41 ~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~ 120 (153)
+|+||+++++|.+.++|+|++.|+||+|.+|.+|||+||+||+| ++++.+|++++..++.++++.+.+.+++...+++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H--~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKH--YENLLDLDPEELAELILAAKKVARALKKALKADG 78 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 59999999999888899999999999999999999999999999 8999999998877777776655555555445779
Q ss_pred eEEEEecCCCCCCccceEEEEEeCC
Q 031773 121 FRIVINDGPNGGQSVFHIHVHLLGG 145 (153)
Q Consensus 121 ~ni~~n~g~~~gq~v~HlHlHIIPr 145 (153)
||+++|+|+.+||+++|+|+||+||
T Consensus 79 ~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 79 LNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred eEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999998
No 6
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.97 E-value=6.4e-31 Score=214.99 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=111.7
Q ss_pred eecCCCchhhhHHHHHHhhhcCCCCCCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCc
Q 031773 15 VLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSK 92 (153)
Q Consensus 15 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~ 92 (153)
+.++.++|++++.|++++++||...+.|+||+|+++|.+ .++|+||++|+||+|++|.+|||+||+||+| +.+|.+
T Consensus 169 i~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH--~~~~~d 246 (346)
T PRK11720 169 IWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAH--VLRLTD 246 (346)
T ss_pred eeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccC--CCChhh
Confidence 457889999999999999999999999999999999987 5999999999999999999999999999999 899999
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHhCCCCceEEEEecCCCCC--CccceEEEEEeCCC
Q 031773 93 AEERHCEILGRLLYTAKLVA-KQEGLEDGFRIVINDGPNGG--QSVFHIHVHLLGGR 146 (153)
Q Consensus 93 l~~~~~~~l~~l~~~~~~~~-~~~~~~~~~ni~~n~g~~~g--q~v~HlHlHIIPr~ 146 (153)
|++++...|+++++.+.+.+ +.++...+||+++|+++.+| |.++|||+||+||+
T Consensus 247 l~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 247 LTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 99977777766665433333 33334447999999999754 57999999999984
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.97 E-value=2.2e-30 Score=184.23 Aligned_cols=104 Identities=29% Similarity=0.394 Sum_probs=93.9
Q ss_pred ceeeeccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCc
Q 031773 42 TIFDKIINKEIP-SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDG 120 (153)
Q Consensus 42 C~fC~ii~~e~~-~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~ 120 (153)
|+||+++++|.+ +++|+|++.++||+|.+|.+|||+||+||+| ++++.+|++++..++.+++..+.+.+++...+++
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H--~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRH--VPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDG 78 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999886 7999999999999999999999999999999 8999999998888887777766666666555789
Q ss_pred eEEEEecCCCCCCccceEEEEEeCCCC
Q 031773 121 FRIVINDGPNGGQSVFHIHVHLLGGRQ 147 (153)
Q Consensus 121 ~ni~~n~g~~~gq~v~HlHlHIIPr~~ 147 (153)
||+++|+|+.+||+++|+|+|||||+.
T Consensus 79 ~n~~~~~g~~~gq~v~H~HiHiiPR~~ 105 (126)
T cd01275 79 FNIGINDGKAGGGIVPHVHIHIVPRWN 105 (126)
T ss_pred eEEEEeCCcccCCCcCEEEEEEeCCcC
Confidence 999999999899999999999999974
No 8
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.97 E-value=8e-31 Score=214.51 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=111.7
Q ss_pred eecCCCchhhhHHHHHHhhhcCCCCCCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCc
Q 031773 15 VLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSK 92 (153)
Q Consensus 15 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~ 92 (153)
+.++.++|++++.|++++++||.+++.|+||+|+++|.+ .++|+||+.|+||+|++|.+|||+||+||+| +.+|.+
T Consensus 169 i~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH--~~~~~d 246 (347)
T TIGR00209 169 IWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAH--VLRITD 246 (347)
T ss_pred eeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccC--CCChhh
Confidence 357789999999999999999999999999999999874 7999999999999999999999999999999 899999
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHhCCCCceEEEEecCCCCCC--ccceEEEEEeCCC
Q 031773 93 AEERHCEILGRLLYTAKLVA-KQEGLEDGFRIVINDGPNGGQ--SVFHIHVHLLGGR 146 (153)
Q Consensus 93 l~~~~~~~l~~l~~~~~~~~-~~~~~~~~~ni~~n~g~~~gq--~v~HlHlHIIPr~ 146 (153)
|++++...|+++++.+.+.+ +.++...+||+++|+++.+|+ ..+|||+||+||+
T Consensus 247 l~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 247 LTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 99987777777666433333 333343489999999998775 6678999999995
No 9
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.96 E-value=6.9e-30 Score=207.99 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=113.9
Q ss_pred eecCCCchhhhHHHHHHhhhcCCCCCCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCc
Q 031773 15 VLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSK 92 (153)
Q Consensus 15 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~ 92 (153)
++++.++|.++..|++++++||.+.+.|+||+++++|.+ .++|+|||.|+||+|++|.+|||+||+||+| +.++.+
T Consensus 159 i~a~~~vp~~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH--~~~~~d 236 (329)
T cd00608 159 IWALPFLPPEVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRH--VSRFTD 236 (329)
T ss_pred eeeCCcCChHHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCC--cCChhH
Confidence 457789999999999999999999999999999999877 7999999999999999999999999999999 899999
Q ss_pred chhhHHHHHHHHHHHHHHHHHH-hCCCCceEEEEecCCCCC----CccceEEEEEeCCC
Q 031773 93 AEERHCEILGRLLYTAKLVAKQ-EGLEDGFRIVINDGPNGG----QSVFHIHVHLLGGR 146 (153)
Q Consensus 93 l~~~~~~~l~~l~~~~~~~~~~-~~~~~~~ni~~n~g~~~g----q~v~HlHlHIIPr~ 146 (153)
|++++...|+++++.+.+.+++ ++...+||+++|+++.+| +.++|||+||+||+
T Consensus 237 l~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~ 295 (329)
T cd00608 237 LTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRR 295 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCc
Confidence 9998888777777754433333 342458999999998764 68999999999995
No 10
>PLN02643 ADP-glucose phosphorylase
Probab=99.96 E-value=1.1e-28 Score=201.23 Aligned_cols=127 Identities=13% Similarity=0.244 Sum_probs=109.0
Q ss_pred eecCCCchhhhHHHHHHhhhcCCCCCCceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcch
Q 031773 15 VLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAE 94 (153)
Q Consensus 15 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~ 94 (153)
+.++.++|.+++.|++.+++||.+.+.|+||+++++|. +|+||++|+||+|++|.+|||+||+||+| +.++.+++
T Consensus 173 i~a~~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH--~~~~~dl~ 247 (336)
T PLN02643 173 IIALPVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDH--SSNFHEID 247 (336)
T ss_pred eEecCcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccc--cCChhhCC
Confidence 45688999999999999999999999999999999886 99999999999999999999999999999 89999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhCCCCceEEEEecCCCC--CC--ccceEEEEEeCCCC
Q 031773 95 ERHCEILGRLLYT-AKLVAKQEGLEDGFRIVINDGPNG--GQ--SVFHIHVHLLGGRQ 147 (153)
Q Consensus 95 ~~~~~~l~~l~~~-~~~~~~~~~~~~~~ni~~n~g~~~--gq--~v~HlHlHIIPr~~ 147 (153)
+++...|+++++. ++++.+.++. ++||+++|+|+.. ++ ..+|||+||+||.+
T Consensus 248 ~~e~~~La~ilk~v~~~l~~~~~~-~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~ 304 (336)
T PLN02643 248 DDKAVDLGGLLKLMLQKISKQLND-PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLS 304 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCceeeeecCCCccccCcccceEEEEEEecCcC
Confidence 9888887777664 3334344444 4999999999973 44 55777789999974
No 11
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.95 E-value=7.5e-28 Score=165.70 Aligned_cols=100 Identities=29% Similarity=0.473 Sum_probs=88.6
Q ss_pred Cceeeecccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh--C
Q 031773 41 PTIFDKIINKEI--PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE--G 116 (153)
Q Consensus 41 ~C~fC~ii~~e~--~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~--~ 116 (153)
.|+||+++++|. +.++|+||+.++||.|++|.+|||+||+||+| +.++.+|++++.++++++++.+.+.++.. .
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h--~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~ 78 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEH--IASLKALTKEDVPLLEHMETVGREKLLRSDNT 78 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCC--CCChHHCCHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 499999999987 47999999999999999999999999999999 89999999999999999988777744443 2
Q ss_pred CCCceEEEEecCCCCCCccceEEEEEeC
Q 031773 117 LEDGFRIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 117 ~~~~~ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+++||+++|+||. |+++|+|+|||.
T Consensus 79 ~~~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 79 DPSEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred CccCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 35799999999985 999999999984
No 12
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.95 E-value=1.5e-27 Score=162.71 Aligned_cols=97 Identities=39% Similarity=0.630 Sum_probs=79.6
Q ss_pred ccccCccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC
Q 031773 49 NKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG 128 (153)
Q Consensus 49 ~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g 128 (153)
++|.++.+|||||.++||++.+|.+|||+||+||+| ++++.+|++++...+.++++.+.+.++....+++||+.+|+|
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H--~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g 78 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRH--VESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNG 78 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESST--GSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEeccc--ccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccch
Confidence 468889999999999999999999999999999999 899999998665555555444333333333467999999999
Q ss_pred CCCCCccceEEEEEeCCCC
Q 031773 129 PNGGQSVFHIHVHLLGGRQ 147 (153)
Q Consensus 129 ~~~gq~v~HlHlHIIPr~~ 147 (153)
+.+||+++|+|+|||||++
T Consensus 79 ~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 79 PAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp GGGTSSSSS-EEEEEEEST
T ss_pred hhhcCccCEEEEEEecccC
Confidence 9999999999999999986
No 13
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.92 E-value=1.6e-24 Score=143.54 Aligned_cols=83 Identities=36% Similarity=0.557 Sum_probs=70.5
Q ss_pred EEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHh---CCCCceEEEEecCCCCCC
Q 031773 57 VYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---GLEDGFRIVINDGPNGGQ 133 (153)
Q Consensus 57 v~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~---~~~~~~ni~~n~g~~~gq 133 (153)
|||||.++||+|++|.+|||+||+||+| +.++.++++++...+.. .++++.+++ ...++||+.+|+|+.+||
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H--~~~~~~l~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRH--VETLPDLDEALLADLVI---TAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchh--hCChhHCCHHHHHHHHH---HHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 6899999999999999999999999999 89999998866555444 444444443 456799999999999999
Q ss_pred ccceEEEEEeC
Q 031773 134 SVFHIHVHLLG 144 (153)
Q Consensus 134 ~v~HlHlHIIP 144 (153)
+++|+|+||||
T Consensus 76 ~v~H~H~hiiP 86 (86)
T cd00468 76 SVPHVHLHVLP 86 (86)
T ss_pred cCCEEEEEeCC
Confidence 99999999998
No 14
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.87 E-value=1e-21 Score=138.88 Aligned_cols=93 Identities=27% Similarity=0.443 Sum_probs=79.2
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCC
Q 031773 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQ 133 (153)
Q Consensus 54 ~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g~~~gq 133 (153)
..++|++++.+||.+..|..|||+||+|+|- +..|.||+.+|...|-...+.+.++++.....+++++.+++|+.|||
T Consensus 17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~R~--vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQ 94 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPLRV--VPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQ 94 (150)
T ss_pred ceEEEeccceEEEEeccccccceEEEecccc--ccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCc
Confidence 7899999999999999999999999999997 89999999866554444444455556666666789999999999999
Q ss_pred ccceEEEEEeCCCCC
Q 031773 134 SVFHIHVHLLGGRQM 148 (153)
Q Consensus 134 ~v~HlHlHIIPr~~~ 148 (153)
+|+|+|+||+||++.
T Consensus 95 TVpHvHvHIlPR~~g 109 (150)
T KOG3379|consen 95 TVPHVHVHILPRKAG 109 (150)
T ss_pred ccceeEEEEcccccc
Confidence 999999999999854
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.86 E-value=2.8e-22 Score=141.00 Aligned_cols=100 Identities=37% Similarity=0.634 Sum_probs=82.9
Q ss_pred CceeeeccccccCccEEEEcCeEEEEecCCCCCCceEEEEecC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCC--
Q 031773 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV-KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-- 117 (153)
Q Consensus 41 ~C~fC~ii~~e~~~~iv~e~d~~va~~~~~p~~pgh~LViPkr-H~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~-- 117 (153)
+|+||.|.+++.+++++||||.+++|.|.+|.++.|+||+||+ | +.++.+|+.++.+.|.++.+.++++++..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~--i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~ 78 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPH--IRSLRDLTPEHLPLLERMREVARELLKEEYPGD 78 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS---SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCC--CCChHHcCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4999999999999999999999999999999999999999999 8 9999999999999999999999998887532
Q ss_pred --CCceEEEEecCCCCCCccceEEEEEeCCC
Q 031773 118 --EDGFRIVINDGPNGGQSVFHIHVHLLGGR 146 (153)
Q Consensus 118 --~~~~ni~~n~g~~~gq~v~HlHlHIIPr~ 146 (153)
...+++|++..| +++|||+|||...
T Consensus 79 ~~~~~~~~gfH~~P----S~~HLHlHvi~~~ 105 (116)
T PF11969_consen 79 LDSDDIRLGFHYPP----SVYHLHLHVISPD 105 (116)
T ss_dssp -EGGGEEEEEESS-----SSSS-EEEEEETT
T ss_pred cchhhhcccccCCC----CcceEEEEEccCC
Confidence 346788887654 8999999999843
No 16
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.81 E-value=5.2e-20 Score=148.87 Aligned_cols=127 Identities=17% Similarity=0.274 Sum_probs=107.5
Q ss_pred eeeecCCCchhhhHHHHHHhhhcCCCCCCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCC
Q 031773 13 LAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGL 90 (153)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l 90 (153)
.=++++-.+|.++++|+..+++||..++.|.||++++.|.. .|+|.|||+|+||+|+++.+|++++|+||+| +..+
T Consensus 158 ~Qi~a~~~~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~h--v~~l 235 (338)
T COG1085 158 GQIVALPVLPLEVARELRSAREYYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEH--VSFL 235 (338)
T ss_pred cceeecccCChHHHHHHHHHHHHHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHH--hhhh
Confidence 34567889999999999999999999999999999998876 5999999999999999999999999999999 8999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHh----CCCCceEEEEecCCCC-CCccceEEEEEeC
Q 031773 91 SKAEERHCEILGRLLYTAKLVAKQE----GLEDGFRIVINDGPNG-GQSVFHIHVHLLG 144 (153)
Q Consensus 91 ~~l~~~~~~~l~~l~~~~~~~~~~~----~~~~~~ni~~n~g~~~-gq~v~HlHlHIIP 144 (153)
.++++++.+.|+.+ .+.++..+ +..-.|++++++.+.. .+..+|+|+|++|
T Consensus 236 ~~~sdee~~~lA~i---lk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 236 TDLSDEELKDLAEI---LKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred hhCCHHHHHHHHHH---HHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 99999776666555 44444443 3334699999988764 4567899999999
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.79 E-value=1.5e-19 Score=134.45 Aligned_cols=113 Identities=18% Similarity=0.278 Sum_probs=71.2
Q ss_pred HHhhhcCCCC-CCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHH
Q 031773 30 EAAVAAVPSD-SPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLY 106 (153)
Q Consensus 30 ~~~~~~~~~~-~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~ 106 (153)
+.++.||.+. |.|+||++++-|.. .|+|++|++|++|.|+...+|++++|+||+| +.+|.++++++...|+++++
T Consensus 2 ~~~~~Y~~~~nGs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh--~~~l~~l~~~E~~dlA~~l~ 79 (166)
T PF02744_consen 2 ENFPHYFEGSNGSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRH--VPSLADLTDEERDDLAAILK 79 (166)
T ss_dssp HHHHHHHHHH-SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS----SSGGG--HHHHHHHHHHHH
T ss_pred ccchHHHccCCCCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCC--hhhHHHhhhHHHhhHHHHHH
Confidence 5778899887 99999999987665 6999999999999999999999999999999 89999999988777777655
Q ss_pred HHHHHHHHh-CCCCceEEEEecCCCCCCccc-eEEEEEeC
Q 031773 107 TAKLVAKQE-GLEDGFRIVINDGPNGGQSVF-HIHVHLLG 144 (153)
Q Consensus 107 ~~~~~~~~~-~~~~~~ni~~n~g~~~gq~v~-HlHlHIIP 144 (153)
.+-+-...+ ..+.+|++++++.|..+..-. ++|+|+-|
T Consensus 80 ~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 80 PILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp HHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred HHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 322223333 335689999999998665432 24555444
No 18
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.72 E-value=5.7e-17 Score=115.17 Aligned_cols=106 Identities=22% Similarity=0.426 Sum_probs=88.5
Q ss_pred cCCCCCCceeeeccccccC--ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 031773 35 AVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVA 112 (153)
Q Consensus 35 ~~~~~~~C~fC~ii~~e~~--~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~ 112 (153)
....+..|.||+|+..+.+ .-...||+.+++|-|++|.+..|.|++||+| +.++.+|+.++..++..+++..+.++
T Consensus 26 ~~~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~H--i~~~~~L~k~~V~Lve~m~~~G~~~l 103 (166)
T KOG4359|consen 26 SPEPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKH--IGNCRTLRKDQVELVENMVTVGKTIL 103 (166)
T ss_pred ccCCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHH--cCChhhcchhhHHHHHHHHHHHHHHH
Confidence 3455678999999875443 4566799999999999999999999999999 99999999999999988999988887
Q ss_pred HHhCC--CCceEEEEecCCCCCCccceEEEEEeC
Q 031773 113 KQEGL--EDGFRIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 113 ~~~~~--~~~~ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
++..+ ++...+|++..| ..+|.|||+|+|-
T Consensus 104 ~r~~~td~~~~r~GFHLPP--f~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 104 ERNNFTDFTNVRMGFHLPP--FCSVSHLHLHVIA 135 (166)
T ss_pred HHhccCCchheeEeccCCC--cceeeeeeEeeec
Confidence 76433 445677888766 5899999999874
No 19
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.65 E-value=1.1e-16 Score=126.14 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=102.8
Q ss_pred ecCCCchhhhHHHHHHhhhcCCCCCCceeeecccccc--CccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcc
Q 031773 16 LTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEI--PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKA 93 (153)
Q Consensus 16 ~~~~~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~--~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l 93 (153)
-++-.+|..+.+|....++||++.+.|.+-+.++-|. +.++|.|+++|+++.|++..+|+++|+|||+| +++|.+|
T Consensus 175 wal~~lP~~vs~e~~s~kkyfe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h--~~~~~~l 252 (354)
T KOG2958|consen 175 WALPVLPSTVSQELDSQKKYFEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRH--VSRFHEL 252 (354)
T ss_pred eecccCCcHHHHHhhhHHHHHHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhh--hhhhccc
Confidence 4677899999999999999999999999966555443 36999999999999999999999999999999 8999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHhCCCCceEEEEecCCCCC---Cccce-EEEEEeCC
Q 031773 94 EERHCEILGRLLYT-AKLVAKQEGLEDGFRIVINDGPNGG---QSVFH-IHVHLLGG 145 (153)
Q Consensus 94 ~~~~~~~l~~l~~~-~~~~~~~~~~~~~~ni~~n~g~~~g---q~v~H-lHlHIIPr 145 (153)
++.+...|+.+++. ..++.+.+.-.-.|+++++.+|.++ .-..| +|+|++|.
T Consensus 253 ~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 253 DEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred chHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhcccc
Confidence 98888877777663 3344444433348999999988642 22335 49999884
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.20 E-value=4.6e-10 Score=79.41 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCCCceeeeccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhC
Q 031773 38 SDSPTIFDKIINKEIP-SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG 116 (153)
Q Consensus 38 ~~~~C~fC~ii~~e~~-~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~ 116 (153)
..++|.||- .+...+ ..||.-++.+++.++..|..+||++|+|-.| .+++..++++..+++..+.+.++++.++.+
T Consensus 9 ~~~~C~fCl-~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H--~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 9 APDNCWFCL-SNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQH--VPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred CCCCCCCcc-CCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecce--ecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 357899996 233333 5789999999999999999999999999999 899999998888888777777777766644
Q ss_pred CCCceEEEEecCCCCCCccceEEEEEeCC
Q 031773 117 LEDGFRIVINDGPNGGQSVFHIHVHLLGG 145 (153)
Q Consensus 117 ~~~~~ni~~n~g~~~gq~v~HlHlHIIPr 145 (153)
. +. +.+-.. .....|.|+++||-
T Consensus 86 ~--~v-vf~E~~---~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 86 K--DV-VFFERV---RKRNPHTHIQCVPV 108 (121)
T ss_pred C--CE-EEEEEe---CCCCcEEEEEEEEc
Confidence 3 21 121111 34457999999994
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.4e-07 Score=77.78 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCCceeeeccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhC
Q 031773 38 SDSPTIFDKIINKEIP-SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG 116 (153)
Q Consensus 38 ~~~~C~fC~ii~~e~~-~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~ 116 (153)
..+.|+||-- +-+.. ..||--+++|++-++..|.+.+|+||+|-.| ++++..|+++..+++.+.-..++++.+..+
T Consensus 317 ~pg~CwFCLS-nP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H--~p~~~~ls~ev~~Ei~kykaal~~myk~~g 393 (528)
T KOG2476|consen 317 PPGSCWFCLS-NPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEH--IPSLVPLSAEVTQEINKYKAALRKMYKKQG 393 (528)
T ss_pred CCCceEEEec-CCChhhheEEEecceeEEeecCCCCCCCeEEEEEccc--ccccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3477999963 32333 5788999999999999999999999999999 899999998888888877777777777655
Q ss_pred CCCceEEEEecCCCCCCccceEEEEEeCCC
Q 031773 117 LEDGFRIVINDGPNGGQSVFHIHVHLLGGR 146 (153)
Q Consensus 117 ~~~~~ni~~n~g~~~gq~v~HlHlHIIPr~ 146 (153)
.. ..-+-+.+ -..-|+|+.+||--
T Consensus 394 ~~-~vvfE~~~-----~rs~Hlq~Qvipvp 417 (528)
T KOG2476|consen 394 KD-AVVFERQS-----YRSVHLQLQVIPVP 417 (528)
T ss_pred Ce-EEEEEeec-----ccceeeEEEEEecc
Confidence 42 22222211 12359999999943
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.64 E-value=2.8e-08 Score=72.96 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=61.4
Q ss_pred ccEEEEc-CeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCC---CceEEEEecCC
Q 031773 54 SKVVYED-DKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLE---DGFRIVINDGP 129 (153)
Q Consensus 54 ~~iv~e~-d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~---~~~ni~~n~g~ 129 (153)
.+++.|. |.++++.|.+|.+..|+||+|++-. +.++.....+....+..+-.+...+...+... .-|++|+
T Consensus 15 e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~-i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~---- 89 (184)
T KOG0562|consen 15 ENVYIESPDDVVVIRDKFPKARMHLLVLPRRSS-IDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGF---- 89 (184)
T ss_pred ceeeccCcccEEEEcccCccceeEEEEecccch-hHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeee----
Confidence 4555566 8999999999999999999998642 66666666666665555544454555555432 2345555
Q ss_pred CCCCccceEEEEEeCC
Q 031773 130 NGGQSVFHIHVHLLGG 145 (153)
Q Consensus 130 ~~gq~v~HlHlHIIPr 145 (153)
.++.++.++|+|||..
T Consensus 90 HavPSM~~LHLHVISk 105 (184)
T KOG0562|consen 90 HAVPSMNNLHLHVISK 105 (184)
T ss_pred ccCcchhheeEEEeec
Confidence 5677899999999974
No 23
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.74 E-value=0.00014 Score=60.82 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=50.3
Q ss_pred EcCeEEEEecCCCCCCceEEEEecC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccc
Q 031773 59 EDDKVLAFRDIDPQAPTHILIIPKV--KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVF 136 (153)
Q Consensus 59 e~d~~va~~~~~p~~pgh~LViPkr--H~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g~~~gq~v~ 136 (153)
++....++.+..|..+||+|++|.. | .+-. ++. +.+..+..++..... ++|++++|. ..|..++.
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~--lPQ~--i~~-------~~l~la~~~a~~~~~-p~frvgYNS-lGA~ASvN 233 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDC--LPQR--IDP-------DSFLLALYMAAEANN-PYFRVGYNS-LGAFATIN 233 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccC--CCeE--ecH-------HHHHHHHHHHHhcCC-CcEEEEecC-CccccCcc
Confidence 3556689999999999999999876 4 2222 222 222344455554444 479999886 44566999
Q ss_pred eEEEEEeC
Q 031773 137 HIHVHLLG 144 (153)
Q Consensus 137 HlHlHIIP 144 (153)
|||+|.+-
T Consensus 234 HLHFQa~y 241 (403)
T PLN03103 234 HLHFQAYY 241 (403)
T ss_pred eeeeeecc
Confidence 99999765
No 24
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0004 Score=55.22 Aligned_cols=89 Identities=21% Similarity=0.394 Sum_probs=64.5
Q ss_pred CccEEEEcC----eEEEEecCC--C--CCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH-hC-CCCceE
Q 031773 53 PSKVVYEDD----KVLAFRDID--P--QAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQ-EG-LEDGFR 122 (153)
Q Consensus 53 ~~~iv~e~d----~~va~~~~~--p--~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~-~~-~~~~~n 122 (153)
..++|||+. .|+.+.|.. + .-.-+++.|-.|+. +.++.||+.++.+.|-.+-..++.++.. ++ .++...
T Consensus 159 ~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~d-ikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlr 237 (310)
T KOG3969|consen 159 DDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRD-IKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLR 237 (310)
T ss_pred ccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCC-cchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEE
Confidence 468999764 567777753 2 22446777777774 9999999999999888887777766554 33 255677
Q ss_pred EEEecCCCCCCccceEEEEEeCCC
Q 031773 123 IVINDGPNGGQSVFHIHVHLLGGR 146 (153)
Q Consensus 123 i~~n~g~~~gq~v~HlHlHIIPr~ 146 (153)
+.++.- .+.+|||+||++-.
T Consensus 238 mf~HYq----PSyYHlHVHi~nik 257 (310)
T KOG3969|consen 238 MFFHYQ----PSYYHLHVHIVNIK 257 (310)
T ss_pred EEEEec----CceEEEEEEEEecc
Confidence 777754 47899999999844
No 25
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00054 Score=58.56 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=62.4
Q ss_pred CCCceeeeccccccCccEEEEcCeEEEEecC-CCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCC
Q 031773 39 DSPTIFDKIINKEIPSKVVYEDDKVLAFRDI-DPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL 117 (153)
Q Consensus 39 ~~~C~fC~ii~~e~~~~iv~e~d~~va~~~~-~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~ 117 (153)
-.+|.+|-=........||--....++.+|. .+...||++|+|-.| ..+-..|++..++++.-..+.+..+....+.
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH--~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~ 483 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQH--RINTLSLDEDVWDEIRNFRKCLALMFASMNL 483 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccc--cccccccchHHHHHHHHHHHHHHHHHHhcCC
Confidence 3679999633333335677777777777765 558899999999999 4555567776666554443333333333222
Q ss_pred CCceEEEEecCCCCCCccceEEEEEeCC
Q 031773 118 EDGFRIVINDGPNGGQSVFHIHVHLLGG 145 (153)
Q Consensus 118 ~~~~ni~~n~g~~~gq~v~HlHlHIIPr 145 (153)
|.. .+-+.+ .-+.-+|+-+|.||-
T Consensus 484 -dvi--FyE~a~-~l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 484 -DVI--FYENAP-SLQRRPHTAIECIPV 507 (628)
T ss_pred -CeE--EEeccC-ccccCCceeEEEeec
Confidence 221 122222 135589999999994
No 26
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=97.09 E-value=0.003 Score=51.75 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=44.3
Q ss_pred eEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCC--ce-EEEEecCCCCCCccceEEEEEeC
Q 031773 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLED--GF-RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 76 h~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~--~~-ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.++|...+| ..++.+++.++ +.+++..-++..+.+.... .| .+..|.|+.+|.|+.|-|..|+.
T Consensus 95 eVii~sp~H--~~~l~~~~~~~---i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDH--NLTLAEMSVAE---IREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcc--cCChhhCCHHH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 677888888 67888887754 4455555444444443211 23 45689999999999999999874
No 27
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=96.63 E-value=0.0025 Score=52.34 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=44.1
Q ss_pred EcCeEEEEecCCCCCCceEEEEecCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccce
Q 031773 59 EDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLS-KAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFH 137 (153)
Q Consensus 59 e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~-~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g~~~gq~v~H 137 (153)
|+.. ++..+..|...||+||+|+-- ..+. .++- +-+..+-.++...+. +.|+++.|. ..+..+|.|
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~---kc~pQrit~-------~al~lav~~m~~~dd-~~frlgyNS-lga~AsVNH 231 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVL---KCLPQRITH-------KALLLAVTMMAEADD-PYFRLGYNS-LGAFASVNH 231 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchh---ccCcceeeH-------HHHHHHHHHHHhcCC-chhheeccc-chhhhhhhh
Confidence 4444 677788899999999999863 2222 1221 111223334444333 357788765 235679999
Q ss_pred EEEEEe
Q 031773 138 IHVHLL 143 (153)
Q Consensus 138 lHlHII 143 (153)
||+|.+
T Consensus 232 LHfha~ 237 (431)
T KOG2720|consen 232 LHFHAY 237 (431)
T ss_pred hhhhhh
Confidence 999965
No 28
>PLN02643 ADP-glucose phosphorylase
Probab=96.58 E-value=0.021 Score=47.07 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=43.9
Q ss_pred ceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCc--e-EEEEecCCCCCCccceEEEEEeC
Q 031773 75 THILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDG--F-RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 75 gh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~--~-ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+++|-.-+| ..+|.+++.++ +..++.+-++-...+....+ | .+.-|.|+.+|.|..|-|-.|+.
T Consensus 108 ~eVii~sp~H--~~~l~~~~~~~---i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVH--SVQLSDLPARH---IGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCcc--CCChHHCCHHH---HHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 3566777778 68898888754 44555554444444432222 3 45688999999999999999875
No 29
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=96.36 E-value=0.025 Score=44.65 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=56.1
Q ss_pred CCceeeecccccc-CccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCC---cchhhHHHHHHHHHHHHHH-HHHH
Q 031773 40 SPTIFDKIINKEI-PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLS---KAEERHCEILGRLLYTAKL-VAKQ 114 (153)
Q Consensus 40 ~~C~fC~ii~~e~-~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~---~l~~~~~~~l~~l~~~~~~-~~~~ 114 (153)
+.|+.-.-..+.. |-..|.....++++-| +..|.|.|+||... ++-+. -+++.....|..-. .++. +.++
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~r--IsGIEsP~Ll~~~tpnyf~~AW-~aR~~v~~~ 114 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKD--RNGPLQYLLMPTYR--ISGIESPLLLEPSTPNYFALAW-QARDFMSKK 114 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEec--CCCCcceEEeeccc--ccCccCccccCCCCccHHHHHH-HHhHHHHHh
Confidence 3455544333322 2234455677777775 66899999999987 44443 23333333343322 3443 4445
Q ss_pred hCC--CC-ceEEEEecCCCCCCccceEEEEEe
Q 031773 115 EGL--ED-GFRIVINDGPNGGQSVFHIHVHLL 143 (153)
Q Consensus 115 ~~~--~~-~~ni~~n~g~~~gq~v~HlHlHII 143 (153)
++. ++ ...+.+|.- .|-+..||||||=
T Consensus 115 ~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 144 (252)
T PRK05471 115 YGKPIPDSAVSLAINSR--YGRTQDQLHIHIS 144 (252)
T ss_pred hCCCCChhheEEEecCC--CCccccceeeehh
Confidence 554 22 356777753 4788899999963
No 30
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.25 E-value=0.023 Score=46.74 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCCCCceeeeccc---cccC---ccEEEEcCeEEEEecCCC------------CCCce--EEEEecCCCCCCCCCcchhh
Q 031773 37 PSDSPTIFDKIIN---KEIP---SKVVYEDDKVLAFRDIDP------------QAPTH--ILIIPKVKDGLTGLSKAEER 96 (153)
Q Consensus 37 ~~~~~C~fC~ii~---~e~~---~~iv~e~d~~va~~~~~p------------~~pgh--~LViPkrH~~~~~l~~l~~~ 96 (153)
..+..|+||.--. .+.+ .-.+++|+.=.+-.|... ..-|+ ++|-...| -.++.+++.+
T Consensus 37 ~~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H--~~~l~~~~~~ 114 (338)
T COG1085 37 DHDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDH--SKTLPELPVE 114 (338)
T ss_pred ccCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcc--cCccccCCHH
Confidence 4578899996321 1112 345556655544433222 11222 44455668 6788888875
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC--Cc-eEEEEecCCCCCCccceEEEEEeC
Q 031773 97 HCEILGRLLYTAKLVAKQEGLE--DG-FRIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 97 ~~~~l~~l~~~~~~~~~~~~~~--~~-~ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
+ +.+++.+.+...+.+... -. ..+..|.|+.+|.|..|-|..|+.
T Consensus 115 ~---~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 115 E---IEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred H---HHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 4 445666666555555322 23 356789999999999999998763
No 31
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0077 Score=47.29 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=49.0
Q ss_pred CeEEEEecCCCCCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEE
Q 031773 61 DKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHV 140 (153)
Q Consensus 61 d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g~~~gq~v~HlHl 140 (153)
+....+++.+|..+.|+|||.++-.+-.+. |+. ++++. +-+++..+ +| -+..|.||.+|.|.+|=|+
T Consensus 92 ~th~~llNKF~VVdeHlLiVTrefedQ~s~--LTl------~Df~t-a~~vL~~l---dg-lvFYNsGp~aGaSq~HkHL 158 (298)
T COG4360 92 DTHKLLLNKFPVVDEHLLIVTREFEDQESA--LTL------ADFTT-AYAVLCGL---DG-LVFYNSGPIAGASQDHKHL 158 (298)
T ss_pred hhHhhhhhcCCcccceeEEeehhhhhcccc--CCH------HHHHH-HHHHHhcc---cc-eEEecCCCCcCcCCCccce
Confidence 355677899999999999999984112222 332 23322 22343332 34 2457899999999999999
Q ss_pred EEeCCC
Q 031773 141 HLLGGR 146 (153)
Q Consensus 141 HIIPr~ 146 (153)
.++|..
T Consensus 159 Qi~pmP 164 (298)
T COG4360 159 QIVPMP 164 (298)
T ss_pred eEeecc
Confidence 999853
No 32
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=96.13 E-value=0.034 Score=43.92 Aligned_cols=96 Identities=20% Similarity=0.371 Sum_probs=57.2
Q ss_pred CCceeeecccccc-CccEEEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCC---cchhhHHHHHHHHHHHHHHH-HHH
Q 031773 40 SPTIFDKIINKEI-PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLS---KAEERHCEILGRLLYTAKLV-AKQ 114 (153)
Q Consensus 40 ~~C~fC~ii~~e~-~~~iv~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~---~l~~~~~~~l~~l~~~~~~~-~~~ 114 (153)
+.|+.-.-.++.. |-..|.....++++-|. ..|.|.|++|... ++-++ -+++.....|.. .-.++.. .++
T Consensus 39 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~r--IsGIEsP~Ll~~~tpnyf~~-AW~aR~~v~~~ 113 (250)
T TIGR00672 39 EECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQYLLMPTYR--INGTESPLLLDPSTPNFFWL-AWQARDFMSKK 113 (250)
T ss_pred hhcCCchhccCCCCCcceEcCCCCeEEEeCC--CCCceeEEeeccc--cCCccChhhcCCCCccHHHH-HHHHhHHHHHh
Confidence 4466554333322 23345557788888885 7899999999987 44443 233333344433 2234443 445
Q ss_pred hCC--CC-ceEEEEecCCCCCCccceEEEEE
Q 031773 115 EGL--ED-GFRIVINDGPNGGQSVFHIHVHL 142 (153)
Q Consensus 115 ~~~--~~-~~ni~~n~g~~~gq~v~HlHlHI 142 (153)
++. +| ...+.+|.- .|-+..||||||
T Consensus 114 ~g~pipd~~lsLaINS~--~gRSQnQLHIHI 142 (250)
T TIGR00672 114 YGQPIPDRAVSLAINSR--TGRSQNHFHIHI 142 (250)
T ss_pred cCCCCChhheeEEecCC--CCcccccceeeH
Confidence 554 22 356778764 478889999996
No 33
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=95.75 E-value=0.041 Score=42.84 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=39.8
Q ss_pred EEEcCeEEEEecCCCCCCceEEEEecCCCCCCCCC---cchhhHHHHHHHHHHHHHH-HHHHhCCC---CceEEEEecCC
Q 031773 57 VYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLS---KAEERHCEILGRLLYTAKL-VAKQEGLE---DGFRIVINDGP 129 (153)
Q Consensus 57 v~e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~---~l~~~~~~~l~~l~~~~~~-~~~~~~~~---~~~ni~~n~g~ 129 (153)
|-.+..++++-| +..|.|+|+||... ++-++ -+++.....|..-. .++. +.+.++.+ +.+.+.+|..
T Consensus 29 Vd~~~gyvvlKd--~~G~~qyLL~Pt~r--IsGIEsP~Ll~~~~pNyf~~AW-~aR~~v~~~~g~~lpd~~lsLaINS~- 102 (222)
T PF02611_consen 29 VDLQQGYVVLKD--RNGPLQYLLMPTDR--ISGIESPALLEPRTPNYFADAW-QARGFVSQKLGKPLPDDDLSLAINSQ- 102 (222)
T ss_dssp EETTTTEEEEE---SSSSS-EEEEESS-----STT-GGGGSTTS--HHHHHH-HTTHHHHHHHTS---GGGEEEEEB-G-
T ss_pred EcCCCCEEEEeC--CCCCccEEEeeccc--cCCccChhhcCCCCccHHHHHH-HhhHHHHHhcCCCCCccceEEEecCc-
Confidence 334566667766 66799999999886 44443 23333334443332 2333 44555543 4577888864
Q ss_pred CCCCccceEEEEEe
Q 031773 130 NGGQSVFHIHVHLL 143 (153)
Q Consensus 130 ~~gq~v~HlHlHII 143 (153)
.|-+..||||||=
T Consensus 103 -~gRsQdQLHIHis 115 (222)
T PF02611_consen 103 -YGRSQDQLHIHIS 115 (222)
T ss_dssp -GG-S--S--EEEE
T ss_pred -cCccccceEeEhh
Confidence 3777789999974
No 34
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.026 Score=44.38 Aligned_cols=88 Identities=23% Similarity=0.309 Sum_probs=51.9
Q ss_pred cCccEEEEcCeE----EEEecCC--C--CCCceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHhC-CCCce
Q 031773 52 IPSKVVYEDDKV----LAFRDID--P--QAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVA-KQEG-LEDGF 121 (153)
Q Consensus 52 ~~~~iv~e~d~~----va~~~~~--p--~~pgh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~-~~~~-~~~~~ 121 (153)
..++++||++.. +++.|.. + ...-|++.|-++.. +.++.||...+...+..+-....... .+++ .++..
T Consensus 153 e~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~d-iktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l 231 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTD-IKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNEL 231 (305)
T ss_pred ccceeEecCcccccCceeccccccCccceeeeeEEEEEecCC-chhhhhCchhhhhHHHhhcccceEecchhcCcChhHe
Confidence 347999998754 4566643 2 22446677777753 88899998877665544322111111 1111 13344
Q ss_pred EEEEecCCCCCCccceEEEEEeC
Q 031773 122 RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 122 ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+.++. ..+.+|+|+||+-
T Consensus 232 ~mfvHY----~PsYyhlHvHI~n 250 (305)
T COG5075 232 RMFVHY----QPSYYHLHVHIVN 250 (305)
T ss_pred EEEEEe----ccceEEEEEEEEe
Confidence 555554 3578999999984
No 35
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=95.40 E-value=0.11 Score=43.07 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=44.4
Q ss_pred ceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCce-EEEEecCCCCCCccceEEEEEeC
Q 031773 75 THILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGF-RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 75 gh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~-ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+++|-..+| ..+|.+++.++.. .++.+-++..+.+...-.| .+.-|.|+.+|.|..|-|-.|+.
T Consensus 106 ~eViv~sp~H--~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDH--SKTLPELSVAALR---EVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCc--CCChhHCCHHHHH---HHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 4567777888 6889998875544 4555444444443221234 45688899999999999999874
No 36
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.06 E-value=0.22 Score=41.25 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=43.1
Q ss_pred ceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCce-EEEEecCCCCCCccceEEEEEeC
Q 031773 75 THILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGF-RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 75 gh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~-ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+++|-.-+| -.+|.+++.++.. .++.+-++-.+.+...-.| .+.-|.|..+|.|..|-|-.|+.
T Consensus 106 ~eVii~sp~H--~~~l~~m~~~~i~---~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDH--SKTLPELSVAALT---EIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCc--cCChhHCCHHHHH---HHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 3567777788 5889998875544 4444433333333321133 45678899999999999999874
No 37
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=93.11 E-value=0.8 Score=35.42 Aligned_cols=78 Identities=22% Similarity=0.440 Sum_probs=42.2
Q ss_pred EcCeEEEEecCCCCCCceEEEEecCCCCCCCCCc---chhhHHHHHHHHHHHHHH-HHHHhCC--CC-ceEEEEecCCCC
Q 031773 59 EDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSK---AEERHCEILGRLLYTAKL-VAKQEGL--ED-GFRIVINDGPNG 131 (153)
Q Consensus 59 e~d~~va~~~~~p~~pgh~LViPkrH~~~~~l~~---l~~~~~~~l~~l~~~~~~-~~~~~~~--~~-~~ni~~n~g~~~ 131 (153)
+...++++-|.+ -|...|++|--+ ++.+.+ ++....-.+ .+.-.++. +.+.++. +| +..+.+|. ..
T Consensus 60 ~~AG~av~Kd~~--gPlQyLLmPt~r--ItGiEsP~L~e~atpNyf-~~AWqAR~fms~kyg~~ipd~dvsLaINs--~~ 132 (252)
T COG2134 60 PQAGYAVLKDRN--GPLQYLLMPTAR--ITGIESPLLLEPATPNYF-YLAWQARDFMSKKYGNPIPDSDVSLAINS--KN 132 (252)
T ss_pred CCCceEEEeccC--CCceeEeeeeec--ccCCcChhhcCCCCccHH-HHHHHHHHHHHHHhCCCCCccceEEEecC--cc
Confidence 333444454433 678889999987 444432 222222222 23334554 3445553 22 34556664 45
Q ss_pred CCccceEEEEEe
Q 031773 132 GQSVFHIHVHLL 143 (153)
Q Consensus 132 gq~v~HlHlHII 143 (153)
|-+..|+|+||=
T Consensus 133 gRtQdqlHIHIS 144 (252)
T COG2134 133 GRTQDQLHIHIS 144 (252)
T ss_pred CccccceEEEEE
Confidence 778899999964
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=82.97 E-value=4 Score=30.52 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=36.9
Q ss_pred eEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCC--CCce-EEEEecCCCCCCccceEEEEEeC
Q 031773 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL--EDGF-RIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 76 h~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~--~~~~-ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
+++|---+| -.+|.+|+.++.. .++.+.+.-...+.. .-.| .+.-|.|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h--~~~~~~~~~~~~~---~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKH--ERTLADMSVKEIK---EILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SST--T--GGGS-HHHHH---HHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCC--CCChhhCCHHHHH---HHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 566666777 5789998876544 344443333333321 1134 44578899999999999988874
No 39
>PF14317 YcxB: YcxB-like protein
Probab=75.71 E-value=5.9 Score=23.20 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=18.2
Q ss_pred EEEEcCeEEEEecCCCCCCceEEEEecCC
Q 031773 56 VVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 56 iv~e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
-+.|+++++.+.- .++..+++||+-
T Consensus 24 ~v~e~~~~~~l~~----~~~~~~~iPk~~ 48 (62)
T PF14317_consen 24 KVVETKDYFYLYL----GKNQAFIIPKRA 48 (62)
T ss_pred EEEEeCCEEEEEE----CCCeEEEEEHHH
Confidence 3667777766643 556899999986
No 40
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=67.02 E-value=30 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHHhCCCCceEEEEecCCCCCCccceEEEEEeCCCC
Q 031773 110 LVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQ 147 (153)
Q Consensus 110 ~~~~~~~~~~~~ni~~n~g~~~gq~v~HlHlHIIPr~~ 147 (153)
.+.+.++...-++..++. ..+.||+|+-+||...
T Consensus 110 ~~~~r~g~~ni~~a~vH~----DE~tPH~H~~~vP~~~ 143 (196)
T PF01076_consen 110 WLQERYGNENIVSAVVHL----DETTPHMHFDVVPIDE 143 (196)
T ss_pred HHHHHCCchhEEEEEEEC----CCCCcceEEEEeeccc
Confidence 333444433345556654 4568999999999653
No 41
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=59.53 E-value=26 Score=26.67 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCC-CCceEEEEecCCCCCCccceEEEEEeC
Q 031773 103 RLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 103 ~l~~~~~~~~~~~~~-~~~~ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
.+.+.+..+++.++. ...|-++.|.- -.|.|+||+=
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~~H~D------~~h~H~Hivi 109 (242)
T PF03432_consen 73 QAHEIAREFAEEMGPGNHQYVVVVHTD------TDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEECCC------cCeeeeeEEE
Confidence 344456777777654 22344455432 3588888663
No 42
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=47.79 E-value=11 Score=20.51 Aligned_cols=14 Identities=57% Similarity=0.612 Sum_probs=11.4
Q ss_pred ccccce-----eceeeeee
Q 031773 3 KENISS-----TSSRLAVL 16 (153)
Q Consensus 3 ~~~~~~-----~~~~~~~~ 16 (153)
++||.. ||.|+.+-
T Consensus 11 ~~NI~~v~~C~TRLR~~v~ 29 (35)
T PF00367_consen 11 KENIKSVTNCATRLRFTVK 29 (35)
T ss_dssp CCCEEEEEE-SSEEEEEES
T ss_pred HHHHHHHhcCcceEEEEec
Confidence 688876 99999883
No 43
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=44.61 E-value=74 Score=26.15 Aligned_cols=118 Identities=16% Similarity=0.043 Sum_probs=66.2
Q ss_pred chhhhHHHHHHhhhcCC------CCCCceeeecc---ccc-cC---ccEEEEcCeEEEEecC--CC-----------CCC
Q 031773 21 SAVVMASENEAAVAAVP------SDSPTIFDKII---NKE-IP---SKVVYEDDKVLAFRDI--DP-----------QAP 74 (153)
Q Consensus 21 ~p~~~~~~~~~~~~~~~------~~~~C~fC~ii---~~e-~~---~~iv~e~d~~va~~~~--~p-----------~~p 74 (153)
+|.|+.+.++.+++-.. ++..|++|-=. .|. .| ...|++||.-.+-.|. .+ ...
T Consensus 27 SphRakRPwqg~~e~~~~~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~ 106 (354)
T KOG2958|consen 27 SPHRAKRPWQGQKEPQNKNTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVK 106 (354)
T ss_pred chhhccCCcccccCccCCCCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeec
Confidence 58888888887665432 34579999411 111 12 2446666544322221 11 113
Q ss_pred ceEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEE---EEecCCCCCCccceEEEE
Q 031773 75 THILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRI---VINDGPNGGQSVFHIHVH 141 (153)
Q Consensus 75 gh~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni---~~n~g~~~gq~v~HlHlH 141 (153)
|-+-||---..+--+|.+++ ..++.+++..=+++...++..+.|++ .-|.|...|++.+|-|-.
T Consensus 107 G~c~Vicf~Pnh~ltLp~m~---~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ 173 (354)
T KOG2958|consen 107 GVCKVICFSPNHNLTLPLMD---VVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQ 173 (354)
T ss_pred ceeEEEEeCCccccccccCC---HHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccc
Confidence 33334433220022344443 45666777766777777776667765 467788889999998865
No 44
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=34.37 E-value=2.2e+02 Score=22.19 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=26.8
Q ss_pred eEEEEecCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHhC---CCCceE--EEEecCCCCCCccceEEEEEe
Q 031773 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG---LEDGFR--IVINDGPNGGQSVFHIHVHLL 143 (153)
Q Consensus 76 h~LViPkrH~~~~~l~~l~~~~~~~l~~l~~~~~~~~~~~~---~~~~~n--i~~n~g~~~gq~v~HlHlHII 143 (153)
-+|-+.-+| .+ ..+|. +.+..|....+++.+... ...||- +-+-.|.. ..-+|-|+||+
T Consensus 24 ~flTLT~~n--~~-~~~L~----~~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~~--~g~~HPH~Hvl 87 (233)
T PF01446_consen 24 IFLTLTVKN--CK-GDELR----DTLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNKE--NGSWHPHFHVL 87 (233)
T ss_pred EEEEeCCCC--CC-cchHH----HHHHHHHHHHHHHHhccchhcccceEEEEEEEecCCC--CCeeccceEEE
Confidence 345556666 22 33332 445555555555554321 123431 11222221 23478888866
No 45
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=34.37 E-value=91 Score=28.77 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCC-CceEEEEecCCCCCCccceEEEEEeC
Q 031773 106 YTAKLVAKQEGLE-DGFRIVINDGPNGGQSVFHIHVHLLG 144 (153)
Q Consensus 106 ~~~~~~~~~~~~~-~~~ni~~n~g~~~gq~v~HlHlHIIP 144 (153)
+++.++++.++.. ..|-++.|.. -.|+|+||+-
T Consensus 88 ~I~~~~~~~LG~~~hQ~Vva~H~D------Tdh~HiHIvi 121 (746)
T PRK13878 88 AIEERICAGLGYGEHQRVSAVHHD------TDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHHhCCCCceEEEEEECC------CCCceeEEEE
Confidence 3566777877643 3455566543 4799999884
No 46
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=30.93 E-value=91 Score=20.71 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.0
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCC
Q 031773 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 54 ~~iv~e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
..+|.|+.+.+.+.... +...+|||.+
T Consensus 31 GiVv~ET~nt~~I~t~~----~~~~~IpK~~ 57 (92)
T smart00538 31 GIVVDETRNTLKIETKE----GRVKTVPKDG 57 (92)
T ss_pred EEEEEeeeeEEEEEeCC----CcEEEEECCC
Confidence 57899999999998743 5789999998
No 47
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=30.24 E-value=32 Score=21.91 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=16.3
Q ss_pred hhHHHHHHhhhcCCCCCCceeeec
Q 031773 24 VMASENEAAVAAVPSDSPTIFDKI 47 (153)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~C~fC~i 47 (153)
+|..++....+-.+.++.|+.|++
T Consensus 21 ~I~~~~~~i~~~ld~~~~ClL~e~ 44 (70)
T PF10372_consen 21 QIEEEISQIIQTLDEDDCCLLCEF 44 (70)
T ss_dssp HHHHHHHHHHHHTT-TT--GGGGH
T ss_pred HHHHHHHHHHHHhccCCceechhH
Confidence 455677777788889999999985
No 48
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.95 E-value=23 Score=24.38 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=7.1
Q ss_pred CCCCceeee
Q 031773 38 SDSPTIFDK 46 (153)
Q Consensus 38 ~~~~C~fC~ 46 (153)
.+++|+||-
T Consensus 98 ~~edClFCl 106 (107)
T PF06156_consen 98 NDEDCLFCL 106 (107)
T ss_pred CCCCCcccC
Confidence 368899994
No 49
>PRK03879 ribonuclease P protein component 1; Validated
Probab=29.34 E-value=1e+02 Score=20.75 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.9
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCC
Q 031773 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 54 ~~iv~e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
..+|.|+.+.+.+. ..+....|||.+
T Consensus 33 GiVv~ETknt~~I~-----~~~~~~~VPK~~ 58 (96)
T PRK03879 33 GRVVDETRNTLVIE-----TDGKEWMVPKDG 58 (96)
T ss_pred EEEEEeceeEEEEE-----cCCcEEEEeCCC
Confidence 57899999999998 345689999998
No 50
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=28.77 E-value=65 Score=20.78 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=14.2
Q ss_pred CceEEEEecCCCCCCCCCcchhhHHH
Q 031773 74 PTHILIIPKVKDGLTGLSKAEERHCE 99 (153)
Q Consensus 74 pgh~LViPkrH~~~~~l~~l~~~~~~ 99 (153)
.-|.+|+|.+. -. +|++++.+
T Consensus 52 ~~~~lVlP~~P--~~---~lse~~L~ 72 (77)
T TIGR03793 52 TVLYLVLPVNP--DI---ELTDEQLD 72 (77)
T ss_pred CeEEEEecCCC--CC---CCCHHHHH
Confidence 44889999998 22 67765433
No 51
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=28.40 E-value=2.3e+02 Score=24.83 Aligned_cols=110 Identities=18% Similarity=0.118 Sum_probs=62.2
Q ss_pred hhhhHHHHHHhhhc-CCCCCCceeeecccccc-----C----ccEE---EEcCeEEEEecCCCCCCceEEEEecCCCCCC
Q 031773 22 AVVMASENEAAVAA-VPSDSPTIFDKIINKEI-----P----SKVV---YEDDKVLAFRDIDPQAPTHILIIPKVKDGLT 88 (153)
Q Consensus 22 p~~~~~~~~~~~~~-~~~~~~C~fC~ii~~e~-----~----~~iv---~e~d~~va~~~~~p~~pgh~LViPkrH~~~~ 88 (153)
|-.-.+++.+|+.- ...-..|..|.--.|-. | -|+| ..++.|..=...+..+..|++|+-.+| .+
T Consensus 150 PEKDPK~IAaAk~~~~s~YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H--~P 227 (489)
T TIGR01239 150 PEKDPKAIAAAKEAKQSSYPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKH--EP 227 (489)
T ss_pred CCCCHHHHHHHhhCccCCCCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCcc--CC
Confidence 44444556566532 22346899998665522 1 2443 578888777777778899999999999 33
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC-CC-CCCccceEEE----EEeCC
Q 031773 89 GLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG-PN-GGQSVFHIHV----HLLGG 145 (153)
Q Consensus 89 ~l~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~ni~~n~g-~~-~gq~v~HlHl----HIIPr 145 (153)
. .++. .-+..|+..+ +. . ..|-+|.|.. |. +|--..|=|+ |.+|.
T Consensus 228 -M-kI~~---~tF~~Ll~fv----~~--f-PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM 278 (489)
T TIGR01239 228 -M-EISK---KTFERLLSFL----GK--F-PHYFIGSNADLPIVGGSILSHDHYQGGRHDFPM 278 (489)
T ss_pred -c-EecH---HHHHHHHHHH----Hh--C-CccccccCCCCCcccccccccccccCCCccccc
Confidence 1 2332 3344443322 22 2 3666665543 22 3333356665 46663
No 52
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=25.22 E-value=34 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=16.6
Q ss_pred CchhhhHHHHHHhhhcCCCCCCceeeeccc
Q 031773 20 LSAVVMASENEAAVAAVPSDSPTIFDKIIN 49 (153)
Q Consensus 20 ~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~ 49 (153)
..++++..|- +.++|-.....|+-|++-.
T Consensus 92 plS~RFRGeh-alrRyp~geerCIACklCe 120 (212)
T KOG3256|consen 92 PLSPRFRGEH-ALRRYPSGEERCIACKLCE 120 (212)
T ss_pred CCCcccccch-hhhcCCCcchhhhhHHHHH
Confidence 3444555443 5556666667787777543
No 53
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=24.94 E-value=1.2e+02 Score=19.32 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=22.6
Q ss_pred eEEEEecCCCCCCceEEEEecCCCCCCCCC
Q 031773 62 KVLAFRDIDPQAPTHILIIPKVKDGLTGLS 91 (153)
Q Consensus 62 ~~va~~~~~p~~pgh~LViPkrH~~~~~l~ 91 (153)
.+.++.+-++..+|..++++++. +.++.
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~--~~sfd 29 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRR--FKSFD 29 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhh--hCCHH
Confidence 46778888999999999999987 55654
No 54
>COG1264 PtsG Phosphotransferase system IIB components [Carbohydrate transport and metabolism]
Probab=23.97 E-value=25 Score=23.19 Aligned_cols=16 Identities=50% Similarity=0.513 Sum_probs=11.6
Q ss_pred ccccce-----eceeeeeecC
Q 031773 3 KENISS-----TSSRLAVLTS 18 (153)
Q Consensus 3 ~~~~~~-----~~~~~~~~~~ 18 (153)
+|||.. ||.|+++--.
T Consensus 14 ~eNI~~~~~C~TRLR~~v~D~ 34 (88)
T COG1264 14 KENIVSVDHCATRLRVTVKDE 34 (88)
T ss_pred HHHHhhhhcCcceEEEEEcCh
Confidence 567765 9999998443
No 55
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=23.75 E-value=1e+02 Score=22.47 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=8.3
Q ss_pred CCCCCceeeec
Q 031773 37 PSDSPTIFDKI 47 (153)
Q Consensus 37 ~~~~~C~fC~i 47 (153)
...+.|+||.-
T Consensus 47 s~~~~CwfC~q 57 (150)
T PHA03073 47 SDNDYCWFCKQ 57 (150)
T ss_pred cCCCcEEeecc
Confidence 34578999983
No 56
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.90 E-value=22 Score=23.80 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=8.5
Q ss_pred CCCCceeeecc
Q 031773 38 SDSPTIFDKII 48 (153)
Q Consensus 38 ~~~~C~fC~ii 48 (153)
+|+.|.||+-.
T Consensus 3 YDg~C~lC~~~ 13 (114)
T PF04134_consen 3 YDGDCPLCRRE 13 (114)
T ss_pred ECCCCHhHHHH
Confidence 47889999843
No 57
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=22.77 E-value=97 Score=20.25 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=22.9
Q ss_pred eEEEEecCCCCCCceEEEEecCCCCCCCCC
Q 031773 62 KVLAFRDIDPQAPTHILIIPKVKDGLTGLS 91 (153)
Q Consensus 62 ~~va~~~~~p~~pgh~LViPkrH~~~~~l~ 91 (153)
.+.++.+-.+..+|..++++++. +.++.
T Consensus 7 ~i~~~rNGD~~~~g~~~~v~~~~--~~s~d 34 (89)
T smart00537 7 RIRFYRNGDRFFKGVRLVVNRKR--FKSFE 34 (89)
T ss_pred EEEEEeCCCCCCCCEEEEEChhh--cCCHH
Confidence 46677888899999999999987 66664
No 58
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.45 E-value=2.9e+02 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.8
Q ss_pred CCCCceEEEEecCC
Q 031773 71 PQAPTHILIIPKVK 84 (153)
Q Consensus 71 p~~pgh~LViPkrH 84 (153)
+..++|++++||.-
T Consensus 10 ~~~~yH~v~~~kyR 23 (136)
T COG1943 10 YGLKYHFVWVPKYR 23 (136)
T ss_pred eCCcEEEEEeccCc
Confidence 45789999999986
No 59
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=67 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=31.5
Q ss_pred cCCCCCCceeeecc-cccc-C---ccEEE-EcCeEEEEecCCCCCCceEEEEecCC
Q 031773 35 AVPSDSPTIFDKII-NKEI-P---SKVVY-EDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 35 ~~~~~~~C~fC~ii-~~e~-~---~~iv~-e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
|+.+.-.|++|... +.|. . .|++. +.+.+..+-+.+|.. +|++|+|.=-
T Consensus 15 f~kk~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~f-Y~VvvCP~C~ 69 (267)
T COG1655 15 FYKKTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYF-YDVVVCPICY 69 (267)
T ss_pred HhhceeccCcccchhhhhheeccceeEecccccceeeccccCCce-eEEEEcchhh
Confidence 56677889999743 2222 1 35554 445556666777754 6999999753
No 60
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=21.93 E-value=1.7e+02 Score=17.58 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=28.0
Q ss_pred eeeeccccccC-ccEEEEcCeEEEEecCCCCCCceEEEEecCC
Q 031773 43 IFDKIINKEIP-SKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 43 ~fC~ii~~e~~-~~iv~e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
.-|.+..+..+ ...+|=+++.++|....+...-..+++|-+-
T Consensus 19 ~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~ 61 (69)
T PF02893_consen 19 YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSD 61 (69)
T ss_dssp EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGG
T ss_pred EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHh
Confidence 45665553333 5789999999999987776666678888764
No 61
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=21.26 E-value=3.2e+02 Score=19.99 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=35.0
Q ss_pred CeEEEEecCCCCC----CceEEEEecCCCCCCC---CCcchhhHHHHHHHHHHHHHHHH-HHhCCCCceEEEEecCCCCC
Q 031773 61 DKVLAFRDIDPQA----PTHILIIPKVKDGLTG---LSKAEERHCEILGRLLYTAKLVA-KQEGLEDGFRIVINDGPNGG 132 (153)
Q Consensus 61 d~~va~~~~~p~~----pgh~LViPkrH~~~~~---l~~l~~~~~~~l~~l~~~~~~~~-~~~~~~~~~ni~~n~g~~~g 132 (153)
+.+-+..+.+|.. --|++|=.|.. ++. -.|++++..+.+++++ ++.. ..+...+.+-...|- .+-
T Consensus 72 ~d~kIl~NDwPY~~e~~I~HlVVWsK~~--L~~d~~~gd~t~~~r~~I~~fv---~~~f~~~~~~~~~v~WF~N~--~~L 144 (158)
T PF12239_consen 72 SDYKILRNDWPYGFEPGIVHLVVWSKFP--LPVDPETGDLTPESRELIEDFV---QRTFVDRLIPEDNVLWFKNW--PSL 144 (158)
T ss_pred CceEEEecCCCcCCCCCceEEEEEecCc--cccccccccccHHHHHHHHHHH---HHHHHhhcCCCccEEEEeCc--hhc
Confidence 3344445556643 24888877765 321 2455655555444432 2222 222233455444443 234
Q ss_pred CccceE-EEEEe
Q 031773 133 QSVFHI-HVHLL 143 (153)
Q Consensus 133 q~v~Hl-HlHII 143 (153)
|||.=+ |+||+
T Consensus 145 qSV~~v~H~HVl 156 (158)
T PF12239_consen 145 QSVRAVEHIHVL 156 (158)
T ss_pred CCcCcceEEEEE
Confidence 665422 44543
No 62
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=20.86 E-value=1.8e+02 Score=19.06 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.7
Q ss_pred ccEEEEcCeEEEEecCCCCCCceEEEEecCC
Q 031773 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 54 ~~iv~e~d~~va~~~~~p~~pgh~LViPkrH 84 (153)
..+|.|+.+.+.+.. ..+.+..+||++
T Consensus 32 GiVV~ETknt~~I~t----~~~~~~~IpK~~ 58 (89)
T PF01868_consen 32 GIVVDETKNTFVIVT----EDGKVKTIPKAG 58 (89)
T ss_dssp EEEEEEETTEEEEEE----TTEEEEEEESTT
T ss_pred EEEEEcccceEEEEe----cCCcEEEEecCC
Confidence 578999999999985 345789999998
No 63
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=20.63 E-value=1.6e+02 Score=18.54 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=31.6
Q ss_pred CchhhhHHHHHHhhhcCCCCCCceeeeccccccC-ccEEEEcCeEEE
Q 031773 20 LSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP-SKVVYEDDKVLA 65 (153)
Q Consensus 20 ~~p~~~~~~~~~~~~~~~~~~~C~fC~ii~~e~~-~~iv~e~d~~va 65 (153)
+.|.-+++-++.|-+-|.....|+|..= .+|+. -.+|-++|+.++
T Consensus 23 ~lP~SleeLl~ia~~kfg~~~~~v~~~d-gaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 23 WLPDSLEELLKIASEKFGFSATKVLNED-GAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred EcCccHHHHHHHHHHHhCCCceEEEcCC-CCEEeEEEEEEcCCEEEE
Confidence 4688888888888877777788888762 33554 367777777664
Done!