BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031774
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 216 bits (550), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 118/149 (79%), Gaps = 1/149 (0%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M RIKDPK SLDFY+RVLG++LL++LDFP MKFSLYFL YED P D ++T WTF +
Sbjct: 36 MLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSR 95
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120
AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKPD
Sbjct: 96 KATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 154
Query: 121 GGKLKGVAFIKDPDDYWIEIFDLKTIGKI 149
GK+KG+AFI+DPD YWIEI + I I
Sbjct: 155 DGKMKGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 112/142 (78%), Gaps = 1/142 (0%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W +
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120
AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKPD
Sbjct: 95 KATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 153
Query: 121 GGKLKGVAFIKDPDDYWIEIFD 142
GK+KG+AFI+DPD YWIEI +
Sbjct: 154 DGKMKGLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 112/142 (78%), Gaps = 1/142 (0%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W +
Sbjct: 39 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 98
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120
AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKPD
Sbjct: 99 KATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 157
Query: 121 GGKLKGVAFIKDPDDYWIEIFD 142
GK+KG+AFI+DPD YWIEI +
Sbjct: 158 DGKMKGLAFIQDPDGYWIEILN 179
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 202 bits (514), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 112/142 (78%), Gaps = 1/142 (0%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P + ++ W +
Sbjct: 35 MLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSR 94
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120
AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RFE LGV+F KKPD
Sbjct: 95 KATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD 153
Query: 121 GGKLKGVAFIKDPDDYWIEIFD 142
GK+KG+AFI+DPD YWI+I +
Sbjct: 154 DGKMKGLAFIQDPDGYWIQILN 175
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 27/150 (18%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M R+ D + S+DFY++VLGM LL+ + PE K+SL F+GY P +
Sbjct: 7 MLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGY-----GPET----------E 51
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-- 118
A IELT+NWG + Y G + +GHI ++VD+ +ACE+ + G ++
Sbjct: 52 EAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVTREAG 101
Query: 119 PDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 148
P G +AF++DPD Y IE+ + K G+
Sbjct: 102 PVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGK 60
M R+ D S+ FY+ LGM +L++ D PE K++L FLGY S+
Sbjct: 13 MIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSS-------------- 58
Query: 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120
+ELT+N+G S +GHI I V+DV + + V + +
Sbjct: 59 -TVLELTYNYGVTS----------YKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE 107
Query: 121 GGKLKGVAFIKDPDDYWIEIFDLKTI 146
G + AF+ DPD Y+IE+ + KT+
Sbjct: 108 SGFM---AFVVDPDGYYIELLNEKTM 130
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 55 VWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGI 96
V FG T L H E+ PD +G E RG+G+ GI
Sbjct: 137 VLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGI 178
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 97 TVDDVYKACERFERLGVEFAKKPDGGKLK 125
TVDD+ +A ++ LG ++ GGKLK
Sbjct: 156 TVDDMIEAAKKIHALGAQYVVITGGGKLK 184
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 1 MFRIKDPKVSLDFYSRVLGMSLL------KRLDFPEMKFSLYFLG--YEDTASAPA 48
+ +K K + FYS++LGM ++ K L F + KF+L+ +G +E A+ P
Sbjct: 32 VMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCFGDQKFNLHEVGKEFEPKAAHPV 87
>pdb|2WL9|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 SEPRGFGHIGITVDDVYKACERFERLGVEFA 116
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|2WL3|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 86 SEPRGFGHIGITVDDVYKACERFERLGVEFA 116
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 98 VDDVYK--ACERFERLGVEFAKKPDGGKL-KGVAFIKD 132
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 319 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 356
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 98 VDDVYKA--CERFERLGVEFAKKPDGGKL-KGVAFIKD 132
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 283 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
>pdb|1RDX|A Chain A, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDX|B Chain B, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDY|A Chain A, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDY|B Chain B, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDZ|A Chain A, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDZ|B Chain B, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
Length = 337
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 51 VDRTVWTFGKPATIELTHNWGTESDPDFKGYHN------GNSEPRGFGHIGITVDDVYK 103
VDR V K + + + E DP Y NS P G ++G V DV++
Sbjct: 196 VDRNVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGAAYVGSMVADVHR 254
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 85 NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYW 137
N E + GI V +VY+ + E+ + KP G K KG KDP+D+W
Sbjct: 102 NLERKWLKKAGIRVPEVYEDPDDIEKPVI---VKPHGAKGGKGYFLAKDPEDFW 152
>pdb|2V3M|A Chain A, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|B Chain B, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|C Chain C, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|D Chain D, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|E Chain E, Structure Of The Gar1 Domain Of Naf1
pdb|2V3M|F Chain F, Structure Of The Gar1 Domain Of Naf1
Length = 131
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 128 AFIKDPDDYWIEIFDLK 144
AFI PD +WI+ F+LK
Sbjct: 109 AFIVTPDAHWIDTFELK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,617,559
Number of Sequences: 62578
Number of extensions: 263019
Number of successful extensions: 547
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 27
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)