Query 031774
Match_columns 153
No_of_seqs 111 out of 1337
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 100.0 4.4E-28 9.5E-33 172.9 17.6 148 1-148 80-227 (233)
2 PLN03042 Lactoylglutathione ly 99.9 1.4E-24 3E-29 151.6 17.4 148 1-148 32-179 (185)
3 KOG2944 Glyoxalase [Carbohydra 99.9 2.1E-25 4.5E-30 147.5 10.3 143 1-144 27-169 (170)
4 PRK10291 glyoxalase I; Provisi 99.9 1.3E-21 2.8E-26 129.5 15.8 121 1-146 1-123 (129)
5 cd07233 Glyoxalase_I Glyoxalas 99.9 4.2E-20 9.1E-25 120.3 15.1 117 1-141 5-121 (121)
6 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 6.5E-20 1.4E-24 123.0 14.6 122 1-143 8-141 (142)
7 TIGR00068 glyox_I lactoylgluta 99.8 1.3E-19 2.9E-24 122.9 15.1 124 1-149 22-147 (150)
8 TIGR03645 glyox_marine lactoyl 99.8 3.1E-19 6.7E-24 122.7 14.2 122 1-145 9-153 (162)
9 PRK11478 putative lyase; Provi 99.8 4.6E-19 9.9E-24 116.9 13.8 116 2-143 12-129 (129)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 4.3E-19 9.4E-24 116.0 13.1 116 1-141 6-125 (125)
11 cd08342 HPPD_N_like N-terminal 99.8 4E-19 8.6E-24 118.7 12.5 119 2-145 6-125 (136)
12 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.8E-18 4E-23 114.0 14.7 109 1-142 7-126 (127)
13 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.2E-18 4.7E-23 112.4 14.5 116 1-142 8-125 (125)
14 cd08355 Glo_EDI_BRP_like_14 Th 99.8 4.5E-18 9.7E-23 111.2 15.8 116 2-142 5-121 (122)
15 cd07263 Glo_EDI_BRP_like_16 Th 99.8 6.5E-18 1.4E-22 109.2 14.6 117 1-142 3-119 (119)
16 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 7.3E-18 1.6E-22 108.6 13.7 106 1-143 5-111 (112)
17 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 1.7E-17 3.7E-22 108.0 15.4 114 2-142 7-121 (122)
18 TIGR03081 metmalonyl_epim meth 99.8 3.1E-18 6.6E-23 112.5 10.8 119 1-142 6-128 (128)
19 cd08359 Glo_EDI_BRP_like_22 Th 99.8 1.3E-17 2.9E-22 108.4 13.6 113 1-142 6-119 (119)
20 PLN02300 lactoylglutathione ly 99.8 1.5E-17 3.2E-22 123.9 15.5 120 1-145 29-150 (286)
21 cd07264 Glo_EDI_BRP_like_15 Th 99.8 2.3E-17 5E-22 108.0 14.1 118 1-143 5-125 (125)
22 cd09011 Glo_EDI_BRP_like_23 Th 99.8 9.2E-18 2E-22 109.6 11.9 111 1-143 7-119 (120)
23 cd07247 SgaA_N_like N-terminal 99.8 2.3E-17 4.9E-22 106.5 13.2 109 1-142 5-114 (114)
24 cd07243 2_3_CTD_C C-terminal d 99.8 5.5E-17 1.2E-21 109.3 14.3 109 1-143 11-125 (143)
25 cd08349 BLMA_like Bleomycin bi 99.8 5.7E-17 1.2E-21 104.0 13.7 108 1-142 3-112 (112)
26 PF12681 Glyoxalase_2: Glyoxal 99.8 1.2E-17 2.5E-22 106.7 10.4 107 2-141 1-108 (108)
27 cd07261 Glo_EDI_BRP_like_11 Th 99.8 3.6E-17 7.7E-22 105.6 12.2 108 1-141 3-113 (114)
28 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 2.6E-17 5.5E-22 105.3 11.2 110 1-140 5-114 (114)
29 cd07257 THT_oxygenase_C The C- 99.7 2.9E-17 6.2E-22 111.9 11.2 115 1-144 6-126 (153)
30 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1.1E-16 2.4E-21 104.2 13.5 116 1-143 5-122 (122)
31 cd07249 MMCE Methylmalonyl-CoA 99.7 3.6E-17 7.9E-22 107.2 10.8 119 1-142 5-128 (128)
32 cd08350 BLMT_like BLMT, a bleo 99.7 1.4E-16 3E-21 104.0 12.9 105 1-143 7-119 (120)
33 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 2E-16 4.3E-21 103.1 13.5 111 2-142 9-124 (125)
34 cd08346 PcpA_N_like N-terminal 99.7 2E-16 4.3E-21 103.3 13.3 117 1-141 6-126 (126)
35 cd09012 Glo_EDI_BRP_like_24 Th 99.7 9.4E-17 2E-21 105.3 11.5 115 2-142 6-123 (124)
36 cd08343 ED_TypeI_classII_C C-t 99.7 5.6E-16 1.2E-20 102.7 15.2 112 1-146 4-120 (131)
37 cd08347 PcpA_C_like C-terminal 99.7 2.8E-16 6E-21 107.5 13.9 113 1-144 6-121 (157)
38 PRK04101 fosfomycin resistance 99.7 2.4E-16 5.3E-21 105.6 13.3 109 2-145 10-121 (139)
39 cd08363 FosB FosB, a fosfomyci 99.7 8.6E-17 1.9E-21 106.8 10.8 112 1-147 5-119 (131)
40 cd08360 MhqB_like_C C-terminal 99.7 3.5E-16 7.6E-21 104.1 13.2 109 1-144 8-121 (134)
41 cd08351 ChaP_like ChaP, an enz 99.7 3.6E-16 7.7E-21 102.5 12.9 102 2-143 10-121 (123)
42 PLN02300 lactoylglutathione ly 99.7 4.5E-16 9.7E-21 116.0 14.7 124 1-149 159-284 (286)
43 cd08364 FosX FosX, a fosfomyci 99.7 2.6E-16 5.7E-21 104.4 12.1 111 2-145 10-124 (131)
44 cd07265 2_3_CTD_N N-terminal d 99.7 4.2E-16 9.1E-21 101.9 12.8 107 1-144 9-120 (122)
45 cd07237 BphC1-RGP6_C_like C-te 99.7 5.4E-16 1.2E-20 105.7 13.4 110 2-144 15-132 (154)
46 cd07252 BphC1-RGP6_N_like N-te 99.7 3.3E-16 7.1E-21 102.3 11.7 104 1-143 7-117 (120)
47 cd07255 Glo_EDI_BRP_like_12 Th 99.7 8E-16 1.7E-20 100.7 13.3 112 1-145 7-121 (125)
48 cd07256 HPCD_C_class_II C-term 99.7 8.3E-16 1.8E-20 105.5 13.7 109 2-144 9-124 (161)
49 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.6E-15 3.4E-20 99.8 14.1 113 1-143 6-128 (128)
50 cd08356 Glo_EDI_BRP_like_17 Th 99.7 5.7E-16 1.2E-20 100.3 11.6 102 1-142 6-113 (113)
51 cd08345 Fosfomycin_RP Fosfomyc 99.7 6.2E-16 1.4E-20 99.5 11.4 105 1-142 3-110 (113)
52 cd09013 BphC-JF8_N_like N-term 99.7 7.7E-16 1.7E-20 100.5 11.8 105 1-143 11-118 (121)
53 cd09014 BphC-JF8_C_like C-term 99.7 1.6E-15 3.4E-20 104.7 13.9 111 2-143 12-127 (166)
54 cd07239 BphC5-RK37_C_like C-te 99.7 1.4E-15 3.1E-20 102.5 13.1 104 2-144 10-118 (144)
55 cd08348 BphC2-C3-RGP6_C_like T 99.7 3.6E-15 7.8E-20 98.9 13.9 114 1-145 6-122 (134)
56 cd06587 Glo_EDI_BRP_like This 99.7 3.1E-15 6.7E-20 94.7 12.9 109 1-140 3-112 (112)
57 cd07251 Glo_EDI_BRP_like_10 Th 99.7 2E-15 4.3E-20 98.0 12.1 114 1-142 3-120 (121)
58 cd08361 PpCmtC_N N-terminal do 99.7 1.6E-15 3.5E-20 99.7 11.7 103 1-144 11-120 (124)
59 cd07267 THT_Oxygenase_N N-term 99.7 2.6E-15 5.7E-20 97.0 12.5 103 1-143 8-110 (113)
60 PF00903 Glyoxalase: Glyoxalas 99.7 1.2E-16 2.6E-21 104.4 6.1 116 1-140 6-128 (128)
61 cd07258 PpCmtC_C C-terminal do 99.7 3.1E-15 6.7E-20 100.6 12.9 106 2-144 5-115 (141)
62 cd07240 ED_TypeI_classII_N N-t 99.7 2.3E-15 4.9E-20 97.3 11.8 104 1-143 7-114 (117)
63 cd07244 FosA FosA, a Fosfomyci 99.7 1.9E-15 4.1E-20 98.8 11.4 104 1-144 6-111 (121)
64 cd08357 Glo_EDI_BRP_like_18 Th 99.7 1.7E-15 3.8E-20 98.9 11.2 114 1-142 4-124 (125)
65 cd07254 Glo_EDI_BRP_like_20 Th 99.7 4.4E-15 9.6E-20 96.7 13.0 106 1-143 6-117 (120)
66 cd07235 MRD Mitomycin C resist 99.7 2.4E-15 5.3E-20 98.1 11.5 52 90-141 66-121 (122)
67 cd08362 BphC5-RrK37_N_like N-t 99.7 4.1E-15 8.9E-20 96.6 12.0 104 2-144 9-118 (120)
68 cd07262 Glo_EDI_BRP_like_19 Th 99.7 5.5E-15 1.2E-19 96.6 12.5 108 1-141 5-122 (123)
69 PRK06724 hypothetical protein; 99.6 5.8E-15 1.3E-19 97.7 12.1 55 90-144 63-124 (128)
70 TIGR03211 catechol_2_3 catecho 99.6 1.3E-14 2.9E-19 108.7 13.5 108 1-141 150-263 (303)
71 cd07266 HPCD_N_class_II N-term 99.6 8.4E-15 1.8E-19 95.4 10.8 104 2-143 10-118 (121)
72 cd08344 MhqB_like_N N-terminal 99.6 2.4E-14 5.3E-19 92.3 11.6 100 2-143 8-109 (112)
73 COG3324 Predicted enzyme relat 99.6 4.4E-14 9.5E-19 92.2 12.1 111 2-144 15-126 (127)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 5.1E-14 1.1E-18 104.9 13.2 109 1-143 147-263 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.6 6.5E-14 1.4E-18 104.6 13.3 109 2-144 142-257 (294)
76 TIGR03211 catechol_2_3 catecho 99.5 2.5E-13 5.4E-18 101.9 12.4 107 1-145 9-120 (303)
77 TIGR02295 HpaD 3,4-dihydroxyph 99.5 3.1E-13 6.7E-18 100.9 12.6 104 2-144 10-116 (294)
78 PF13669 Glyoxalase_4: Glyoxal 99.5 1.3E-13 2.9E-18 88.6 7.5 93 2-119 5-97 (109)
79 TIGR03213 23dbph12diox 2,3-dih 99.5 6.2E-13 1.3E-17 99.1 12.1 105 1-144 8-119 (286)
80 KOG2943 Predicted glyoxalase [ 99.4 3E-12 6.4E-17 90.7 9.3 114 1-146 22-146 (299)
81 cd06588 PhnB_like Escherichia 99.4 5.3E-11 1.2E-15 78.6 13.5 109 2-141 5-128 (128)
82 COG3565 Predicted dioxygenase 99.4 1.5E-11 3.1E-16 77.8 9.6 121 2-149 10-135 (138)
83 COG2514 Predicted ring-cleavag 99.3 2E-11 4.3E-16 88.2 11.2 111 1-145 15-128 (265)
84 COG2764 PhnB Uncharacterized p 99.3 1.7E-10 3.7E-15 76.5 14.3 116 2-145 6-133 (136)
85 cd07250 HPPD_C_like C-terminal 99.3 3.5E-11 7.5E-16 84.8 8.0 100 2-119 9-112 (191)
86 KOG2943 Predicted glyoxalase [ 99.2 2E-11 4.2E-16 86.6 6.2 116 1-149 154-276 (299)
87 COG3607 Predicted lactoylgluta 99.2 7.8E-11 1.7E-15 75.6 8.4 116 2-144 9-128 (133)
88 COG0346 GloA Lactoylglutathion 99.1 9.5E-10 2.1E-14 71.3 7.6 125 1-142 7-138 (138)
89 TIGR01263 4HPPD 4-hydroxypheny 99.0 2.7E-09 5.8E-14 81.9 8.6 100 2-119 164-267 (353)
90 TIGR01263 4HPPD 4-hydroxypheny 99.0 1.7E-08 3.6E-13 77.5 12.9 95 2-120 8-102 (353)
91 PLN02875 4-hydroxyphenylpyruva 98.8 1.3E-08 2.8E-13 78.7 7.1 100 2-119 186-295 (398)
92 PRK10148 hypothetical protein; 98.7 2E-06 4.4E-11 58.2 14.3 52 91-143 86-141 (147)
93 PRK01037 trmD tRNA (guanine-N( 98.7 7.9E-08 1.7E-12 72.5 7.8 51 90-142 300-353 (357)
94 COG3185 4-hydroxyphenylpyruvat 98.5 4.2E-07 9.2E-12 68.2 7.0 96 4-120 177-275 (363)
95 PF14506 CppA_N: CppA N-termin 98.3 1.8E-05 3.9E-10 50.9 10.3 112 1-145 5-116 (125)
96 COG2514 Predicted ring-cleavag 98.2 7.3E-06 1.6E-10 59.7 8.1 91 2-141 174-264 (265)
97 PF13468 Glyoxalase_3: Glyoxal 98.1 1.3E-05 2.9E-10 55.6 7.1 95 1-114 5-101 (175)
98 PLN02875 4-hydroxyphenylpyruva 97.6 0.0014 3.1E-08 51.1 11.0 56 89-144 91-152 (398)
99 PF06983 3-dmu-9_3-mt: 3-demet 97.4 0.013 2.8E-07 38.0 11.9 41 92-141 73-116 (116)
100 KOG0638 4-hydroxyphenylpyruvat 97.2 0.001 2.2E-08 49.8 5.8 97 2-120 23-121 (381)
101 PF14696 Glyoxalase_5: Hydroxy 97.2 0.00077 1.7E-08 45.1 4.6 113 2-145 15-128 (139)
102 PF13669 Glyoxalase_4: Glyoxal 96.8 0.003 6.6E-08 40.1 4.8 55 92-146 1-58 (109)
103 KOG0638 4-hydroxyphenylpyruvat 96.7 0.00082 1.8E-08 50.3 1.8 125 6-148 190-342 (381)
104 PF15067 FAM124: FAM124 family 96.6 0.039 8.4E-07 39.8 9.3 99 2-140 134-235 (236)
105 PF14507 CppA_C: CppA C-termin 95.8 0.047 1E-06 34.4 5.7 43 90-138 53-98 (101)
106 cd08353 Glo_EDI_BRP_like_7 Thi 95.1 0.17 3.7E-06 33.2 7.2 54 90-143 3-69 (142)
107 TIGR03645 glyox_marine lactoyl 94.6 0.28 6.2E-06 33.4 7.3 56 89-144 3-78 (162)
108 cd08352 Glo_EDI_BRP_like_1 Thi 94.0 0.54 1.2E-05 29.6 7.3 55 90-144 3-59 (125)
109 PF13468 Glyoxalase_3: Glyoxal 93.6 0.1 2.3E-06 36.0 3.7 51 91-144 1-55 (175)
110 cd08346 PcpA_N_like N-terminal 93.2 0.76 1.7E-05 29.0 7.1 55 90-144 1-61 (126)
111 cd07242 Glo_EDI_BRP_like_6 Thi 92.6 1 2.3E-05 28.7 7.1 52 90-145 1-56 (128)
112 cd06587 Glo_EDI_BRP_like This 91.8 1.3 2.8E-05 26.7 6.6 52 93-146 1-53 (112)
113 cd07245 Glo_EDI_BRP_like_9 Thi 91.6 1 2.3E-05 27.5 6.1 53 91-145 1-54 (114)
114 cd08347 PcpA_C_like C-terminal 91.3 1.7 3.8E-05 29.4 7.2 50 90-143 1-53 (157)
115 COG3185 4-hydroxyphenylpyruvat 90.7 5 0.00011 31.0 9.7 46 89-134 86-141 (363)
116 cd07249 MMCE Methylmalonyl-CoA 90.7 1.4 3E-05 27.9 6.1 52 92-144 2-56 (128)
117 cd07263 Glo_EDI_BRP_like_16 Th 90.6 2.1 4.5E-05 26.5 6.8 52 93-144 1-55 (119)
118 cd07237 BphC1-RGP6_C_like C-te 90.2 2.4 5.3E-05 28.4 7.2 56 88-143 7-68 (154)
119 PF13670 PepSY_2: Peptidase pr 89.9 1.1 2.3E-05 27.0 4.7 44 100-143 30-73 (83)
120 cd07241 Glo_EDI_BRP_like_3 Thi 88.9 3.9 8.5E-05 25.6 7.2 52 91-144 2-57 (125)
121 cd08342 HPPD_N_like N-terminal 88.9 4.1 8.9E-05 26.5 7.4 52 91-144 1-53 (136)
122 TIGR03081 metmalonyl_epim meth 88.6 2.2 4.8E-05 27.0 5.9 53 91-143 2-55 (128)
123 PRK11478 putative lyase; Provi 88.2 3 6.5E-05 26.5 6.3 54 90-143 6-61 (129)
124 cd08348 BphC2-C3-RGP6_C_like T 87.7 5.1 0.00011 25.7 7.2 51 91-144 2-55 (134)
125 cd07255 Glo_EDI_BRP_like_12 Th 87.1 5.6 0.00012 25.0 7.4 50 90-144 2-53 (125)
126 cd07250 HPPD_C_like C-terminal 86.6 3.8 8.3E-05 28.7 6.4 56 90-145 3-65 (191)
127 cd07235 MRD Mitomycin C resist 86.4 5 0.00011 25.2 6.5 25 92-116 2-26 (122)
128 cd07233 Glyoxalase_I Glyoxalas 86.4 5.4 0.00012 24.8 6.7 52 92-143 2-58 (121)
129 cd08344 MhqB_like_N N-terminal 86.2 6.1 0.00013 24.6 6.8 29 90-118 2-30 (112)
130 cd04895 ACT_ACR_1 ACT domain-c 85.8 3.4 7.3E-05 24.3 4.9 39 101-139 15-56 (72)
131 PLN03042 Lactoylglutathione ly 85.5 7.2 0.00016 27.3 7.4 31 89-119 26-57 (185)
132 cd08360 MhqB_like_C C-terminal 85.2 7.6 0.00016 25.1 7.0 51 89-143 2-56 (134)
133 cd07252 BphC1-RGP6_N_like N-te 84.8 6.3 0.00014 24.9 6.4 30 90-119 2-32 (120)
134 cd04882 ACT_Bt0572_2 C-termina 83.3 3.2 7E-05 23.0 4.1 27 90-116 39-65 (65)
135 COG3865 Uncharacterized protei 82.9 12 0.00026 25.3 10.9 43 92-143 79-124 (151)
136 cd07253 Glo_EDI_BRP_like_2 Thi 82.3 9.4 0.0002 23.7 6.6 30 90-119 3-33 (125)
137 PLN02367 lactoylglutathione ly 80.8 11 0.00024 27.5 6.9 31 89-119 74-105 (233)
138 cd08358 Glo_EDI_BRP_like_21 Th 80.6 13 0.00029 24.3 7.4 30 90-119 2-32 (127)
139 PF00903 Glyoxalase: Glyoxalas 80.2 11 0.00025 23.3 7.1 52 90-142 1-56 (128)
140 cd07240 ED_TypeI_classII_N N-t 78.4 13 0.00028 22.9 6.3 30 90-119 2-32 (117)
141 cd04897 ACT_ACR_3 ACT domain-c 76.2 11 0.00024 22.4 4.8 39 101-139 15-56 (75)
142 cd04883 ACT_AcuB C-terminal AC 75.6 7.3 0.00016 22.1 4.0 29 90-118 41-71 (72)
143 cd07267 THT_Oxygenase_N N-term 74.9 17 0.00037 22.5 6.2 29 90-118 3-31 (113)
144 cd08364 FosX FosX, a fosfomyci 74.9 19 0.00042 23.1 7.1 54 90-144 4-60 (131)
145 PRK04101 fosfomycin resistance 74.0 21 0.00046 23.1 7.2 47 90-142 4-51 (139)
146 cd07247 SgaA_N_like N-terminal 72.6 19 0.00042 22.0 6.5 51 92-144 2-53 (114)
147 cd07266 HPCD_N_class_II N-term 72.5 20 0.00044 22.3 6.4 29 90-118 4-33 (121)
148 cd07265 2_3_CTD_N N-terminal d 72.2 7.9 0.00017 24.3 3.9 29 90-118 4-33 (122)
149 cd08351 ChaP_like ChaP, an enz 71.6 22 0.00048 22.3 6.3 48 90-142 4-52 (123)
150 cd07256 HPCD_C_class_II C-term 71.2 7.7 0.00017 26.2 3.8 29 89-117 2-31 (161)
151 cd07257 THT_oxygenase_C The C- 70.4 21 0.00045 23.8 5.8 28 91-118 2-30 (153)
152 cd09013 BphC-JF8_N_like N-term 70.0 24 0.00052 22.0 6.8 29 90-118 6-35 (121)
153 cd08343 ED_TypeI_classII_C C-t 69.4 27 0.00057 22.3 6.8 52 92-143 1-54 (131)
154 cd09014 BphC-JF8_C_like C-term 69.0 27 0.00058 23.7 6.1 30 89-118 5-35 (166)
155 cd07243 2_3_CTD_C C-terminal d 68.2 12 0.00025 24.7 4.1 29 89-117 5-34 (143)
156 cd08362 BphC5-RrK37_N_like N-t 67.9 26 0.00057 21.6 6.2 29 90-118 3-32 (120)
157 TIGR00068 glyox_I lactoylgluta 67.8 31 0.00068 22.7 6.2 29 89-117 16-45 (150)
158 cd07239 BphC5-RK37_C_like C-te 67.7 30 0.00065 22.8 6.0 28 90-117 4-32 (144)
159 cd07262 Glo_EDI_BRP_like_19 Th 67.7 27 0.00059 21.8 6.3 48 92-143 2-54 (123)
160 COG1225 Bcp Peroxiredoxin [Pos 67.6 36 0.00079 23.3 6.4 55 89-143 63-138 (157)
161 PRK06724 hypothetical protein; 67.4 25 0.00054 22.8 5.5 27 90-116 7-37 (128)
162 PF07063 DUF1338: Domain of un 64.4 8.6 0.00019 29.2 3.2 27 90-116 184-216 (302)
163 COG0346 GloA Lactoylglutathion 63.4 13 0.00029 22.8 3.6 29 90-118 2-31 (138)
164 cd07244 FosA FosA, a Fosfomyci 63.2 18 0.00038 22.8 4.1 29 90-118 1-30 (121)
165 cd08361 PpCmtC_N N-terminal do 61.9 38 0.00082 21.4 6.3 29 90-118 6-35 (124)
166 KOG4657 Uncharacterized conser 59.9 7.6 0.00017 28.1 2.0 34 5-41 145-178 (246)
167 cd04906 ACT_ThrD-I_1 First of 59.7 20 0.00043 21.5 3.7 29 90-118 40-72 (85)
168 COG4747 ACT domain-containing 59.0 11 0.00024 24.6 2.5 27 92-118 110-136 (142)
169 PF02208 Sorb: Sorbin homologo 58.8 4.5 9.8E-05 21.4 0.6 18 2-19 17-34 (47)
170 cd04908 ACT_Bt0572_1 N-termina 57.3 25 0.00053 19.7 3.6 24 93-116 42-65 (66)
171 PF07494 Reg_prop: Two compone 57.0 15 0.00031 16.4 2.1 12 128-139 9-20 (24)
172 cd09012 Glo_EDI_BRP_like_24 Th 55.9 48 0.001 20.7 6.2 26 92-117 2-27 (124)
173 PRK13490 chemoreceptor glutami 54.8 29 0.00063 23.8 4.2 41 99-140 112-152 (162)
174 PRK13498 chemoreceptor glutami 54.5 30 0.00065 23.9 4.2 39 99-138 115-153 (167)
175 PRK13495 chemoreceptor glutami 54.4 31 0.00066 23.7 4.2 39 99-137 105-143 (159)
176 PF03975 CheD: CheD chemotacti 53.0 23 0.0005 22.6 3.3 42 99-141 64-105 (114)
177 PRK13497 chemoreceptor glutami 52.6 34 0.00073 24.1 4.3 40 99-138 112-151 (184)
178 PRK13494 chemoreceptor glutami 51.6 36 0.00079 23.4 4.2 39 99-137 114-152 (163)
179 KOG2944 Glyoxalase [Carbohydra 51.5 61 0.0013 22.3 5.2 38 1-41 120-158 (170)
180 KOG2792 Putative cytochrome C 50.1 36 0.00077 25.4 4.2 45 101-145 212-262 (280)
181 PRK13493 chemoreceptor glutami 49.6 37 0.00081 24.5 4.2 38 99-136 139-176 (213)
182 cd04885 ACT_ThrD-I Tandem C-te 48.9 34 0.00073 19.4 3.3 27 90-116 38-67 (68)
183 COG1871 CheD Chemotaxis protei 48.9 50 0.0011 22.8 4.5 38 99-136 114-151 (164)
184 PF06923 GutM: Glucitol operon 48.8 17 0.00037 23.2 2.2 45 97-142 22-69 (109)
185 PRK13488 chemoreceptor glutami 48.1 43 0.00094 22.9 4.2 41 99-140 107-147 (157)
186 PRK13491 chemoreceptor glutami 46.8 46 0.001 23.8 4.2 40 99-138 115-154 (199)
187 cd04904 ACT_AAAH ACT domain of 46.8 57 0.0012 18.8 4.7 35 101-135 14-51 (74)
188 COG1834 N-Dimethylarginine dim 45.6 37 0.0008 25.4 3.7 37 98-134 37-73 (267)
189 PHA02754 hypothetical protein; 44.0 51 0.0011 18.5 3.3 44 101-144 20-63 (67)
190 PRK13487 chemoreceptor glutami 43.7 53 0.0011 23.5 4.2 41 99-140 127-167 (201)
191 PRK09437 bcp thioredoxin-depen 43.5 93 0.002 20.4 5.9 54 90-143 64-138 (154)
192 COG3603 Uncharacterized conser 42.9 29 0.00064 22.6 2.5 24 93-116 104-127 (128)
193 PRK13489 chemoreceptor glutami 41.9 58 0.0013 23.9 4.2 41 99-140 125-165 (233)
194 cd04931 ACT_PAH ACT domain of 41.7 82 0.0018 19.3 5.6 46 91-136 14-66 (90)
195 PF13176 TPR_7: Tetratricopept 40.9 18 0.00039 17.6 1.1 17 4-20 12-28 (36)
196 cd04929 ACT_TPH ACT domain of 40.8 75 0.0016 18.6 4.7 38 100-137 13-53 (74)
197 TIGR00318 cyaB adenylyl cyclas 39.9 48 0.001 22.8 3.5 22 96-117 8-29 (174)
198 cd04930 ACT_TH ACT domain of t 39.2 92 0.002 20.0 4.5 45 92-136 42-93 (115)
199 PF09142 TruB_C: tRNA Pseudour 39.1 59 0.0013 17.9 3.2 41 100-144 5-45 (56)
200 PRK06704 RNA polymerase factor 37.4 32 0.00069 25.0 2.4 42 95-139 183-224 (228)
201 PF02630 SCO1-SenC: SCO1/SenC; 37.3 75 0.0016 21.8 4.1 17 126-142 156-172 (174)
202 cd00034 ChSh Chromo Shadow Dom 36.4 18 0.00038 19.9 0.7 18 3-20 36-53 (54)
203 cd04909 ACT_PDH-BS C-terminal 36.0 38 0.00082 18.9 2.2 23 93-115 44-69 (69)
204 COG4009 Uncharacterized protei 35.9 1E+02 0.0022 18.6 4.3 26 92-117 51-78 (88)
205 cd04880 ACT_AAAH-PDT-like ACT 35.7 87 0.0019 17.8 4.8 23 94-116 2-28 (75)
206 PF15121 TMEM71: TMEM71 protei 35.2 41 0.0009 22.4 2.4 23 107-137 63-85 (149)
207 smart00300 ChSh Chromo Shadow 34.8 18 0.0004 20.4 0.6 19 3-21 42-60 (61)
208 PF12687 DUF3801: Protein of u 34.4 1.2E+02 0.0025 21.7 4.8 45 90-134 33-79 (204)
209 KOG0178 20S proteasome, regula 34.3 33 0.00071 24.8 1.9 14 124-137 143-156 (249)
210 PF00585 Thr_dehydrat_C: C-ter 34.2 77 0.0017 19.3 3.4 30 90-119 50-82 (91)
211 COG0077 PheA Prephenate dehydr 33.4 1E+02 0.0022 23.3 4.5 49 91-139 194-249 (279)
212 COG5397 Uncharacterized conser 33.0 61 0.0013 24.6 3.2 52 92-144 159-212 (349)
213 PRK11899 prephenate dehydratas 32.5 1E+02 0.0023 23.1 4.5 47 91-137 194-247 (279)
214 PRK10234 DNA-binding transcrip 32.2 63 0.0014 21.0 2.8 46 96-142 22-70 (118)
215 PF00379 Chitin_bind_4: Insect 31.9 78 0.0017 16.9 2.9 15 127-141 30-44 (52)
216 PTZ00056 glutathione peroxidas 31.6 1.9E+02 0.004 20.4 6.7 27 89-115 71-105 (199)
217 KOG2465 Uncharacterized conser 30.9 55 0.0012 25.1 2.7 24 88-111 166-189 (390)
218 PF09008 Head_binding: Head bi 30.0 55 0.0012 21.0 2.2 25 127-151 48-72 (114)
219 cd03008 TryX_like_RdCVF Trypar 30.0 1.7E+02 0.0038 19.6 5.7 51 90-140 65-128 (146)
220 PF13225 DUF4033: Domain of un 29.5 80 0.0017 19.3 2.8 27 10-36 49-75 (86)
221 PF02174 IRS: PTB domain (IRS- 29.4 86 0.0019 19.5 3.1 30 81-110 64-93 (100)
222 cd04926 ACT_ACR_4 C-terminal 29.2 1.2E+02 0.0025 17.3 6.3 44 94-137 4-54 (72)
223 cd04886 ACT_ThrD-II-like C-ter 29.1 1E+02 0.0023 16.7 3.9 25 92-116 45-72 (73)
224 COG3349 Uncharacterized conser 29.0 1.1E+02 0.0024 25.1 4.3 37 103-139 14-51 (485)
225 PF12142 PPO1_DWL: Polyphenol 28.4 81 0.0017 17.5 2.5 18 127-144 11-28 (54)
226 PF14044 NETI: NETI protein 27.7 1.2E+02 0.0026 17.0 4.6 20 100-119 9-28 (57)
227 PF12897 Aminotran_MocR: Alani 27.3 2.4E+02 0.0052 22.7 5.7 48 90-142 345-394 (425)
228 PF15590 Imm15: Immunity prote 27.1 64 0.0014 18.8 2.0 23 128-150 27-50 (69)
229 PF13200 DUF4015: Putative gly 26.9 79 0.0017 24.3 3.0 22 98-119 60-81 (316)
230 cd03017 PRX_BCP Peroxiredoxin 26.5 1.8E+02 0.0038 18.5 5.8 54 90-143 57-128 (140)
231 smart00671 SEL1 Sel1-like repe 26.1 54 0.0012 15.3 1.5 13 5-17 19-31 (36)
232 PF10706 Aminoglyc_resit: Amin 25.5 1.7E+02 0.0036 20.4 4.1 25 93-117 46-70 (174)
233 TIGR03168 1-PFK hexose kinase, 25.5 2E+02 0.0044 21.2 5.1 42 102-143 64-105 (303)
234 PF06185 YecM: YecM protein; 25.4 1.6E+02 0.0034 20.9 4.0 29 90-118 34-65 (185)
235 PF01393 Chromo_shadow: Chromo 25.3 41 0.00088 18.8 1.0 17 5-21 41-57 (58)
236 cd04896 ACT_ACR-like_3 ACT dom 25.0 1.6E+02 0.0034 17.4 4.7 37 101-138 14-55 (75)
237 smart00459 Sorb Sorbin homolog 24.6 43 0.00094 18.2 0.9 15 5-19 23-37 (50)
238 PRK13577 diaminopimelate epime 24.5 1.9E+02 0.0041 21.5 4.7 55 89-145 156-212 (281)
239 PF14091 DUF4269: Domain of un 24.5 1.1E+02 0.0024 20.9 3.1 44 61-116 82-132 (152)
240 PRK03467 hypothetical protein; 24.2 2.3E+02 0.0051 19.1 5.7 48 99-146 5-54 (144)
241 COG2605 Predicted kinase relat 24.1 1.1E+02 0.0024 23.5 3.2 36 99-134 266-301 (333)
242 TIGR00288 conserved hypothetic 23.6 2E+02 0.0044 19.8 4.3 28 90-117 105-134 (160)
243 PF14527 LAGLIDADG_WhiA: WhiA 23.5 1.9E+02 0.0041 17.7 3.9 41 92-134 22-65 (93)
244 PF13756 Stimulus_sens_1: Stim 23.1 72 0.0016 20.3 1.9 13 127-139 20-32 (112)
245 PRK03381 PII uridylyl-transfer 22.8 2.1E+02 0.0046 25.0 5.2 50 90-139 706-762 (774)
246 PF01835 A2M_N: MG2 domain; I 22.8 58 0.0013 19.7 1.4 17 127-143 39-55 (99)
247 PHA00159 endonuclease I 22.7 1.7E+02 0.0037 19.7 3.6 42 101-142 20-68 (148)
248 COG3981 Predicted acetyltransf 22.7 2.8E+02 0.006 19.4 4.8 51 90-142 34-85 (174)
249 cd04927 ACT_ACR-like_2 Second 22.4 1.7E+02 0.0037 16.9 6.1 36 101-136 14-53 (76)
250 PF12512 DUF3717: Protein of u 22.0 32 0.00069 20.2 0.1 15 2-16 4-18 (71)
251 PF09741 DUF2045: Uncharacteri 21.6 46 0.001 24.4 0.9 21 89-109 131-151 (237)
252 COG1724 Predicted RNA binding 21.3 1.8E+02 0.004 16.8 5.0 36 101-141 9-44 (66)
253 COG0253 DapF Diaminopimelate e 21.3 2E+02 0.0043 21.7 4.2 54 90-145 154-209 (272)
254 TIGR00646 MG010 DNA primase-re 21.1 1.5E+02 0.0033 21.5 3.4 46 99-144 25-78 (218)
255 PF13905 Thioredoxin_8: Thiore 21.0 1.9E+02 0.0041 16.9 4.0 48 90-137 35-95 (95)
256 PRK14707 hypothetical protein; 20.9 1.9E+02 0.0042 28.6 4.6 43 101-143 2358-2406(2710)
257 cd04907 ACT_ThrD-I_2 Second of 20.7 1.9E+02 0.0041 17.1 3.3 30 90-119 41-72 (81)
258 PF14883 GHL13: Hypothetical g 20.5 1.1E+02 0.0025 23.2 2.8 18 99-116 17-34 (294)
259 TIGR03828 pfkB 1-phosphofructo 20.5 2.9E+02 0.0064 20.2 5.1 42 102-143 64-105 (304)
260 COG3795 Uncharacterized protei 20.4 62 0.0013 21.2 1.2 16 1-16 83-98 (123)
261 PF08238 Sel1: Sel1 repeat; I 20.4 46 0.001 15.9 0.5 13 5-17 22-34 (39)
262 PRK10622 pheA bifunctional cho 20.2 2.3E+02 0.005 22.5 4.5 47 91-137 297-350 (386)
No 1
>PLN02367 lactoylglutathione lyase
Probab=99.96 E-value=4.4e-28 Score=172.91 Aligned_cols=148 Identities=89% Similarity=1.519 Sum_probs=119.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
||.|+|++++++||+++|||++..+...++.++.++|+++++....|....+..+|..++...|||.++++.+..+....
T Consensus 80 mlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~~~~~~ 159 (233)
T PLN02367 80 MYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESDPDFKG 159 (233)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCccccchh
Confidence 68999999999999999999999988888888999999875432222222345677777678999998777654333334
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCcccc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 148 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 148 (153)
+..++..+.|+.||||.|+|+++++++|+++|+++...|..+...+.+||+|||||+|||+|......
T Consensus 160 y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~~~~~ 227 (233)
T PLN02367 160 YHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLKTIGT 227 (233)
T ss_pred cccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecccccc
Confidence 77777666799999999999999999999999999988877665567899999999999999876553
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.93 E-value=1.4e-24 Score=151.63 Aligned_cols=148 Identities=87% Similarity=1.508 Sum_probs=108.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|+++|++||+++|||++..+...++.++.++|++.+.....|+++.....|...+...|||....+....+....
T Consensus 32 ~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~ 111 (185)
T PLN03042 32 MFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESDPEFKG 111 (185)
T ss_pred EEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcccccccc
Confidence 58999999999999999999999887777777888888764322122222234555555677899987554332222222
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCcccc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 148 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 148 (153)
+..++..+.|+.||||.|+|+++++++|+++|+.+...|..+...+.+||+|||||.|||++......
T Consensus 112 ~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~~~~ 179 (185)
T PLN03042 112 YHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKRIGG 179 (185)
T ss_pred cccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECCCchh
Confidence 44444334589999999999999999999999999977765443456788999999999999776543
No 3
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=147.50 Aligned_cols=143 Identities=56% Similarity=0.935 Sum_probs=122.0
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
|++++|+.+++.||.+++|+.+......++..+..++++.+.....|........|.......+|+.+++++.+++ .+.
T Consensus 27 ~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~-~~~ 105 (170)
T KOG2944|consen 27 MLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP-DQA 105 (170)
T ss_pred eeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc-chh
Confidence 6889999999999999999999988777777788888888654444444444558888889999999999987655 334
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
+.+++..|+|++||||+|+|+++++++|+++|+++...+.+|....++|+.||||++|||....
T Consensus 106 ~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 106 YLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred hcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeecC
Confidence 8889888899999999999999999999999999999998888767899999999999998653
No 4
>PRK10291 glyoxalase I; Provisional
Probab=99.89 E-value=1.3e-21 Score=129.48 Aligned_cols=121 Identities=41% Similarity=0.755 Sum_probs=87.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|+++|++||+++|||++......++..+.+++++.++.. ....+++...++.. +
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~------~ 59 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVD------K 59 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCC---------------CcceEEeeecCCCC------C
Confidence 68999999999999999999998776555555666777543210 02456665332211 1
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc--ceEEEEECCCCCEEEEeccCcc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTI 146 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~~ 146 (153)
+..+ .++.|+||.|+|+++++++|+++|+++..++..... ...+||+|||||+|||++..+.
T Consensus 60 ~~~g----~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~ 123 (129)
T PRK10291 60 YELG----TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDA 123 (129)
T ss_pred CcCC----CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccc
Confidence 2112 368899999999999999999999998865533222 2467889999999999997753
No 5
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.86 E-value=4.2e-20 Score=120.32 Aligned_cols=117 Identities=61% Similarity=1.112 Sum_probs=85.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||+.......++.++..+++..++. .+...+++....+... +
T Consensus 5 ~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~l~~~~~~~~-----~ 64 (121)
T cd07233 5 MLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDE---------------DSEGVLELTYNWGTEE-----P 64 (121)
T ss_pred EEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCC---------------CCccEEEEEecCCCCC-----C
Confidence 3789999999999999999999887654444455566664320 0135677654322211 1
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
... ..+..|++|.++|+++++++++++|+++..+|.....++.+||+|||||+|||+
T Consensus 65 ~~~----~~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 65 YDN----GNGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred cCC----CCCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 111 126789999999999999999999999998886554456789999999999985
No 6
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.85 E-value=6.5e-20 Score=123.04 Aligned_cols=122 Identities=17% Similarity=0.299 Sum_probs=83.5
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCC-----------ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 69 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 69 (153)
.|.|+|+++|++||++ |||++..+...++ ....++++... .+...|||...
T Consensus 8 ~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------~g~~~iel~~~ 69 (142)
T cd08353 8 GIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP-----------------DGHSRLELSKF 69 (142)
T ss_pred EEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC-----------------CCCceEEEEEe
Confidence 3789999999999998 9999876543221 11222333221 23578899865
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcc-cceEEEEECCCCCEEEEecc
Q 031774 70 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~ 143 (153)
..+...+... .. .....|+.||||.|+|+++++++|+++|+++..++.... ..+.+||+||||+.|||+|.
T Consensus 70 ~~~~~~~~~~-~~--~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 70 HHPAVIADHR-PA--PVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred cCCCCcCcCC-CC--CCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 4332211100 10 112347899999999999999999999999987664332 23578999999999999984
No 7
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=1.3e-19 Score=122.93 Aligned_cols=124 Identities=56% Similarity=0.942 Sum_probs=87.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..+...++..+..++++.++.. ....+++........
T Consensus 22 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~------ 80 (150)
T TIGR00068 22 MLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDET---------------SAAVIELTHNWGTEK------ 80 (150)
T ss_pred EEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCC---------------CccEEEEeecCCCCc------
Confidence 37899999999999999999998765544444445556543210 023455543222111
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC--CcccceEEEEECCCCCEEEEeccCccccc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKTIGKI 149 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 149 (153)
.. ...+..|++|.|+|+++++++|.++|+++..+|. .+...+.+||+|||||+|||++..+.+++
T Consensus 81 ~~----~~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 81 YD----LGNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred cc----CCCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 11 1137789999999999999999999999987663 22223578899999999999998876654
No 8
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=3.1e-19 Score=122.71 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=80.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeec--C----------------CccEEEEEeeccCCCCCCCCcccceeeecCCCc
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDF--P----------------EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPA 62 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (153)
.|.|+|+++|++||+++|||++..+... . ...+.++++..+ ++.
T Consensus 9 ~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------------------~~~ 70 (162)
T TIGR03645 9 GISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTG------------------DRI 70 (162)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecC------------------CCC
Confidence 3789999999999999999988643110 0 011333333321 245
Q ss_pred EEEEEeccCCCCCCCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecC-C---Ccc-cceEEEEECCCCCE
Q 031774 63 TIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP-D---GGK-LKGVAFIKDPDDYW 137 (153)
Q Consensus 63 ~lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~-~---~~~-~~~~~~~~DPdG~~ 137 (153)
.|+++....+..... .. .....|+.|+||.|+|+++++++|+++|+++...+ . .+. ..+.+|++|||||+
T Consensus 71 ~ieL~~~~~~~~~~~--~~---~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ 145 (162)
T TIGR03645 71 GVELFEFKNQENPED--NF---EYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNI 145 (162)
T ss_pred cEEEEeccCCCCCCc--cc---ccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCE
Confidence 688886543322110 01 11124889999999999999999999998765422 2 111 12578999999999
Q ss_pred EEEeccCc
Q 031774 138 IEIFDLKT 145 (153)
Q Consensus 138 iel~~~~~ 145 (153)
|||+++..
T Consensus 146 iEl~~~~~ 153 (162)
T TIGR03645 146 LEIYSHSY 153 (162)
T ss_pred EEEEEcCh
Confidence 99999764
No 9
>PRK11478 putative lyase; Provisional
Probab=99.83 E-value=4.6e-19 Score=116.87 Aligned_cols=116 Identities=24% Similarity=0.306 Sum_probs=77.5
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCc-cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
|.|+|++++++||+++|||++......++. .+. ..+..+ +...+++.....+...+.
T Consensus 12 l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~------------------~~~~l~l~~~~~~~~~~~--- 69 (129)
T PRK11478 12 IIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALN------------------GQYVIELFSFPFPPERPS--- 69 (129)
T ss_pred EEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecC------------------CCcEEEEEEecCCCCCCC---
Confidence 789999999999999999998754222211 111 111111 246777765332221110
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCc-ccceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iel~~~ 143 (153)
.....|+.|+||.++|+++++++|+++|+++...+... ...+.+||+|||||.|||++.
T Consensus 70 ----~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 70 ----RPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred ----CCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 11124778999999999999999999999987543222 223578999999999999873
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.82 E-value=4.3e-19 Score=115.96 Aligned_cols=116 Identities=26% Similarity=0.368 Sum_probs=79.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||+.......+..++..+|+..++ +..++++........+
T Consensus 6 ~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~---- 63 (125)
T cd07241 6 AIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD------------------GARLELMTRPDIAPSP---- 63 (125)
T ss_pred EEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC------------------CcEEEEEcCcccCCCc----
Confidence 378999999999999999999865443333334444554421 3567776432111100
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEe
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 141 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 141 (153)
. .....|+.|+||.|+ |+++++++|+++|+++...|.....+ +.++++|||||.|||.
T Consensus 64 ~---~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 64 N---EGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred c---cCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 0 112347899999996 48999999999999998866433222 3567899999999983
No 11
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.82 E-value=4e-19 Score=118.71 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=82.9
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..+...++ ....++.. +...+++........ + ...+
T Consensus 6 i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~-------------------g~~~l~l~~~~~~~~-~-~~~~ 62 (136)
T cd08342 6 FYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ-------------------GDINFVLNSPLNSFA-P-VADF 62 (136)
T ss_pred EEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc-------------------CCEEEEEecCCCCCC-c-hHHH
Confidence 78999999999999999999987654321 12233321 135566643211111 0 0001
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc-ceEEEEECCCCCEEEEeccCc
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~~~~ 145 (153)
. .....+..|++|.|+|+++++++|+++|+++..+|...++ .+.+|++||||++|||+++..
T Consensus 63 ~--~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 63 L--EKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred H--HhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 0 0112478899999999999999999999999988876333 358899999999999999654
No 12
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.8e-18 Score=113.98 Aligned_cols=109 Identities=30% Similarity=0.551 Sum_probs=77.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCC-----------ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 69 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 69 (153)
+|.|+|+++|++||+++|||++..+...++ ..+..++++.... ..+..|||.+.
T Consensus 7 ~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---------------~~~~~lEL~~n 71 (127)
T cd08358 7 VFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPE---------------DDHFVVELTYN 71 (127)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCC---------------CCccEEEeEec
Confidence 589999999999999999999987765554 3344455553210 11568999875
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 70 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
++..+ +..+. + |++|.+++. ++.++|+++|+++...+. .++|++||||+.|||+.
T Consensus 72 ~~~~~------~~~g~----~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 72 YGIGD------YELGN----D--FLGITIHSK-QAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC------CCCCC----C--EEEEEEECH-HHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEec
Confidence 54321 32222 3 677777776 566999999998887664 26899999999999985
No 13
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=2.2e-18 Score=112.42 Aligned_cols=116 Identities=24% Similarity=0.354 Sum_probs=79.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCC-ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
.|.|.|++++++||+++|||+.......++ ..+.+ .+..+ +...+++.........+
T Consensus 8 ~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~i~l~~~~~~~~~~--- 65 (125)
T cd08352 8 AIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLN------------------GGYQLELFSFPNPPERP--- 65 (125)
T ss_pred EEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecC------------------CCcEEEEEEcCCCCCCC---
Confidence 378999999999999999999886543222 12222 22211 13567775432221100
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc-ceEEEEECCCCCEEEEec
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~ 142 (153)
. .....|..|++|.|+|+++++++|+++|+++...+..... .+.+|++||+||+|||+|
T Consensus 66 -~---~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 66 -S---YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred -C---CCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 0 1122478899999999999999999999998876643332 357899999999999986
No 14
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=4.5e-18 Score=111.22 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=79.6
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++......++.......+..+ +..+.+.......... .
T Consensus 5 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~~~~----~ 61 (122)
T cd08355 5 LRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-------------------DGGVMVGSVRDDYRAS----S 61 (122)
T ss_pred EEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-------------------CEEEEEecCCCccccc----c
Confidence 7899999999999999999998765433333323333332 2344443222111000 0
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEec
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 142 (153)
......+..|++|.|+|+++++++++++|+++..+|....++ +.++++|||||+|+|.+
T Consensus 62 --~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 62 --ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred --cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 001113557999999999999999999999999888655444 57889999999999964
No 15
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=6.5e-18 Score=109.17 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=81.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++.......+ ++..+.+...+. ....+++.....+.. .
T Consensus 3 ~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~--~--- 60 (119)
T cd07263 3 SLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS----------------PETSLVLAPPANPAA--M--- 60 (119)
T ss_pred eEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC----------------CeeEEEEeCCCCccc--c---
Confidence 478999999999999999999987654212 233344442210 023455542221111 0
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
. .....+..|++|.++|+++++++|+++|+++..++.....++.+|++||+||+|||+|
T Consensus 61 ~---~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 61 S---GLQPGGTPGLVLATDDIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred c---cccCCCceEEEEEehHHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 0 1123467899999999999999999999999988744444568899999999999975
No 16
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.79 E-value=7.3e-18 Score=108.63 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=75.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||+..... . . ..++...+. .+..+.+... ...
T Consensus 5 ~l~v~Dl~~s~~FY~~~lG~~~~~~~---~--~-~~~~~~~~~----------------~~~~~~~~~~--~~~------ 54 (112)
T cd07238 5 NLPVADPEAAAAFYADVLGLDVVMDH---G--W-IATFASPQN----------------MTVQVSLATE--GGT------ 54 (112)
T ss_pred eEecCCHHHHHHHHHHhcCceEEEcC---C--c-eEEEeecCC----------------CCcEEEEecC--CCC------
Confidence 47899999999999999999986431 1 1 222322110 0244554321 100
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 143 (153)
+....|++|.|+|+++++++|+++|+++..+|....++ +.+|+.||+||+|||.++
T Consensus 55 -------~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 55 -------ATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred -------CCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 01346999999999999999999999998877654444 578999999999999975
No 17
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=1.7e-17 Score=107.98 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=80.1
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||+.......++..+....+..+ +..+.+... .+.. . .
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~-~~~~-~-~--- 61 (122)
T cd07246 7 LIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-------------------DSVLMLADE-FPEH-G-S--- 61 (122)
T ss_pred EEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-------------------CEEEEEecC-Cccc-C-C---
Confidence 7899999999999999999998876533333333333322 234555421 1110 0 0
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEec
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 142 (153)
......+..|++|.|+|++++++++.+.|+++..+|....++ +.++++|||||+|+|.+
T Consensus 62 --~~~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 62 --PASWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred --CCCCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 001123567999999999999999999999999887544443 58899999999999986
No 18
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.78 E-value=3.1e-18 Score=112.53 Aligned_cols=119 Identities=28% Similarity=0.432 Sum_probs=80.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||+.......++..+..+++..+ ...++|........ + ...
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~l~~~~~~~~-~-~~~ 64 (128)
T TIGR03081 6 GIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-------------------NTKVELLEPLGEDS-P-IAK 64 (128)
T ss_pred EEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-------------------CEEEEEEecCCCCC-h-HHH
Confidence 37899999999999999999987654333333444455432 35677754322111 0 000
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeec-CCCcccc-eEEEE--ECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PDGGKLK-GVAFI--KDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~-~~~~~~~-~~~~~--~DPdG~~iel~~ 142 (153)
+.... ..+..|+||.|+|+++++++|+++|+++..+ |..+.++ +.+|+ +||||++||++|
T Consensus 65 ~~~~~--~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 65 FLEKN--GGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred HHhcC--CCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 11111 2477899999999999999999999999864 5555444 45566 799999999975
No 19
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.78 E-value=1.3e-17 Score=108.35 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||+...... .+ ..+..++ +...|.+........ +.
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~-----------------~~~~l~l~~~~~~~~-~~--- 58 (119)
T cd08359 6 VIVTDDLAETADFYVRHFGFTVVFDSD----WY--VSLRSPD-----------------GGVELAFMLPGHETV-PA--- 58 (119)
T ss_pred EEEECCHHHHHHHHHHhhCcEEEeccC----cE--EEEecCC-----------------CceEEEEccCCCCCC-cc---
Confidence 378999999999999999999886521 12 2333221 013444432111110 00
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 142 (153)
.. .... ....|++|.|+|+++++++++++|+++..+|...+++ +.++++|||||+|||+|
T Consensus 59 ~~-~~~~-~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 59 AQ-YQFQ-GQGLILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred hh-cccC-CceEEEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 00 0111 2335999999999999999999999998877655444 67899999999999986
No 20
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=1.5e-17 Score=123.94 Aligned_cols=120 Identities=38% Similarity=0.672 Sum_probs=86.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..+...++..+..+++..+... .+..+++....+...
T Consensus 29 ~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~~~~------ 87 (286)
T PLN02300 29 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SNFVVELTYNYGVDK------ 87 (286)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCC---------------CceEEEEeccCCCCc------
Confidence 37899999999999999999998765544444556666542210 134566643222111
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc--ceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~ 145 (153)
.. ...|+.|++|.|+|+++++++++++|+++...|..... .+.+||+|||||+|||+++..
T Consensus 88 ~~----~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~ 150 (286)
T PLN02300 88 YD----IGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGP 150 (286)
T ss_pred cc----cCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Confidence 11 12378899999999999999999999999877644322 246789999999999999754
No 21
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=2.3e-17 Score=107.96 Aligned_cols=118 Identities=20% Similarity=0.287 Sum_probs=74.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCC--CCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE--SDPDF 78 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~--~~~~~ 78 (153)
+|.|+|++++++||+++|||+...... ...+.. +..+ ...+.+....... .....
T Consensus 5 ~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 61 (125)
T cd07264 5 IIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG-------------------ETTLAFASHDLAESNLKGGF 61 (125)
T ss_pred EEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC-------------------cEEEEEEcccccccccccCc
Confidence 478999999999999999999865422 112211 1111 1222222111000 00000
Q ss_pred CCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEecc
Q 031774 79 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 79 ~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 143 (153)
.+. ......+..|++|.|+|+++++++++++|+++..+|...+++ +.++++|||||.|||.++
T Consensus 62 ~~~--~~~~~~~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 62 VKA--DPAQPPAGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred cCC--ccccCCCcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 000 001112346999999999999999999999998877554443 568899999999999874
No 22
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=9.2e-18 Score=109.55 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=72.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|+++|++||+++|||++..... . + ..+.. ...+.+...+....... +
T Consensus 7 ~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~---------------------~~~l~~~~~~~~~~~~~--~ 58 (120)
T cd09011 7 LLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VTFEG---------------------GFALQEGYSWLEGISKA--D 58 (120)
T ss_pred EEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EEEec---------------------cceeccchhhhccCCcc--c
Confidence 478999999999999999999875321 1 1 11110 11111110000000000 0
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCC-eEeecCCCcccc-eEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGV-EFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~-~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 143 (153)
. ..+.+..|++|.|+|+++++++|+++|+ ++..+|...+++ +.+||+|||||+|||.+.
T Consensus 59 ~----~~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 59 I----IEKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred c----cccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 1 0112457999999999999999999986 677777655444 689999999999999874
No 23
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.77 E-value=2.3e-17 Score=106.50 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=76.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..... +...+ +++..++ ...+.+.......
T Consensus 5 ~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~------------------~~~~~~~~~~~~~------- 56 (114)
T cd07247 5 ELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG------------------GAVGGLMKAPEPA------- 56 (114)
T ss_pred EeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC------------------ccEEEEecCCCCC-------
Confidence 378999999999999999999976542 12222 2333221 1233443221110
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcc-cceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~ 142 (153)
....+..|++|.++|+++++++|+++|+++..+|...+ .++.++++|||||.|+|+|
T Consensus 57 -----~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 57 -----AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred -----CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 01125579999999999999999999999998775444 3468999999999999975
No 24
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=5.5e-17 Score=109.33 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=73.8
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCcc-EEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK-FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
+|.|+|++++++||+++|||++..+...++.. ...+|+..+.. .+.+.+.. .+
T Consensus 11 ~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-----------------~h~~~~~~--~~------- 64 (143)
T cd07243 11 LLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-----------------PHDIAFVG--GP------- 64 (143)
T ss_pred EEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-----------------cceEEEec--CC-------
Confidence 37899999999999999999987664322222 12334433210 12232311 00
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHH---HHHHHHhcCCeEeecCC-Ccc-cceEEEEECCCCCEEEEecc
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPD-GGK-LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~-~~~-~~~~~~~~DPdG~~iel~~~ 143 (153)
..++.|+||.|+|+++ +.++|+++|+++...|. .+. .+..+||+|||||.|||...
T Consensus 65 --------~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 65 --------DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred --------CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 1367899999999877 67899999999876553 222 23578999999999999764
No 25
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.76 E-value=5.7e-17 Score=104.00 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=76.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..... ...+ .++..+ +..+.+........
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~-------------------~~~~~l~~~~~~~~------ 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG-------------------GAQLMLSEHDGDEP------ 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC-------------------CEEEEEeccCCCCC------
Confidence 378999999999999999999887643 1222 333321 35566643221110
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCe-EeecCCCcccc-eEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVE-FAKKPDGGKLK-GVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~-~~~~~~~~~~~-~~~~~~DPdG~~iel~~ 142 (153)
. ...+..|++|.++|+++++++++++|+. +..++.....+ +.++++||+||.|||.|
T Consensus 54 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 54 V-----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred C-----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 0 1125569999999999999999999998 55555443333 57889999999999976
No 26
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.76 E-value=1.2e-17 Score=106.72 Aligned_cols=107 Identities=25% Similarity=0.396 Sum_probs=72.8
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..... . +.....+... ......+.......
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~--~~~~~~~~~~-----------------~~~~~~~~~~~~~~-------- 51 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D--YVDFSLGFRF-----------------HDGVIEFLQFPDPP-------- 51 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--S--EEEEEETEEE-----------------EEEEEEEEEEESSS--------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--C--eEEEEeccch-----------------hhhhHHHccCCccc--------
Confidence 78999999999999999999998432 2 2222221100 01122332221111
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEe
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 141 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 141 (153)
..+.+..|++|.|+|+++++++++++|+++..+|....++ +.+++.|||||+|||+
T Consensus 52 ----~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 52 ----GPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp ----SSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred ----cCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 1123678999999999999999999999998877554444 6899999999999986
No 27
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=3.6e-17 Score=105.65 Aligned_cols=108 Identities=22% Similarity=0.355 Sum_probs=75.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|+++|++||+++||+++..... .+.. +...+ +..+.++.......
T Consensus 3 ~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~--~~~~~------------------~~~~~l~~~~~~~~------ 52 (114)
T cd07261 3 LLYVEDPAASAEFYSELLGREPVELSP----TFAL--FVLGS------------------GVKLGLWSRHTVEP------ 52 (114)
T ss_pred EEEECCHHHHHHHHHHHcCCCccCCCC----ceEE--EEeCC------------------CcEEEEeeccccCC------
Confidence 478999999999999999999876421 2222 22111 24555643221110
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
.. ....+..|++|.+++ +++++++++++|+++..+|....+++.++|+|||||+|||.
T Consensus 53 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 53 AS---DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred CC---CCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence 00 011356799999985 89999999999999998876555556789999999999986
No 28
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.75 E-value=2.6e-17 Score=105.28 Aligned_cols=110 Identities=26% Similarity=0.330 Sum_probs=76.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||+.......+. ...++..++ ...+++.........
T Consensus 5 ~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~------------------~~~i~l~~~~~~~~~----- 58 (114)
T cd07245 5 ALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD------------------GPQLHLIEEDPPDAL----- 58 (114)
T ss_pred EEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC------------------CcEEEEEecCCCccc-----
Confidence 378999999999999999999876543221 112333211 236666543222110
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEE
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 140 (153)
.....+..|++|+++|+++++++++++|+++...+......+.+|+.||+||.|||
T Consensus 59 ----~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 59 ----PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred ----cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 01123678999999999999999999999998877543334568999999999996
No 29
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=2.9e-17 Score=111.90 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=76.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecC-CccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
.|.|+|+++|++||+++|||++......+ .......|+..++. ...++.... ..
T Consensus 6 ~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~-~l------- 60 (153)
T cd07257 6 VLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRG-----------------EEYVDHHTL-AL------- 60 (153)
T ss_pred EEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCC-----------------CCcccchHH-HH-------
Confidence 37899999999999999999987654433 12234555554321 000111000 00
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHH---HHHHhcCCeEeecCCCccc--ceEEEEECCCCCEEEEeccC
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~ 144 (153)
. . ....++.|+||.|+|++++. ++|+++|+++...+..... ..++|++|||||+|||....
T Consensus 61 -~-~--~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 61 -A-Q--GPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred -h-c--CCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 0 0 01247899999999999986 9999999999876633222 23679999999999998754
No 30
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1.1e-16 Score=104.22 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=76.8
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|++++++||+++|||++.... +..+ +++..++ ...+.++..........
T Consensus 5 ~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~~--~~l~~~~------------------~~~~~l~~~~~~~~~~~--- 58 (122)
T cd08354 5 ALYVDDLEAAEAFYEDVLGLELMLKE---DRRL--AFFWVGG------------------RGMLLLFDPGATSTPGG--- 58 (122)
T ss_pred EEEeCCHHHHHHHHHhccCCEEeecC---CCce--EEEEcCC------------------CcEEEEEecCCcccccC---
Confidence 47899999999999999999988641 2222 3343322 23444433221110000
Q ss_pred CCCCCCCCCCcceEEEEeC--CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
... .....+..|++|.++ |++++++++.++|+++...+.....++.+||+|||||+|||+++
T Consensus 59 ~~~-~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 59 EIP-PHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CCC-CCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 000 011236789999994 79999999999999987766433334578999999999999863
No 31
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.74 E-value=3.6e-17 Score=107.21 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=81.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecC-CccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
.|.|+|++++++||+++|||+........ +.....+++..+ +..+++.......... .
T Consensus 5 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~l~l~~~~~~~~~~--~ 63 (128)
T cd07249 5 GIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-------------------NVQIELIEPLDDDSPI--A 63 (128)
T ss_pred EEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-------------------CEEEEEEEECCCCCcH--H
Confidence 37899999999999999999998765432 223344555532 4677776543221110 0
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC-CcccceEEEEECCC---CCEEEEec
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPD---DYWIEIFD 142 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPd---G~~iel~~ 142 (153)
.+. .....+..|++|.|+|+++++++++++|+++..+|. ....++.+++.||+ |++|||++
T Consensus 64 ~~~--~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 64 KFL--EKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred HHH--hcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 000 112347889999999999999999999999998775 33334444445554 99999975
No 32
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.73 E-value=1.4e-16 Score=104.03 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=72.5
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|+++|++||++ |||+....... .+ +++..+ +..+++....... +
T Consensus 7 ~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~--~~~~~~-------------------~~~l~l~~~~~~~--~---- 55 (120)
T cd08350 7 NLPSRDLDATEAFYAR-LGFSVGYRQAA---GY--MILRRG-------------------DLELHFFAHPDLD--P---- 55 (120)
T ss_pred eeEcCCHHHHHHHHHH-cCCEEEecCCC---CE--EEEEcC-------------------CEEEEEEecCcCC--C----
Confidence 4789999999999999 99998765321 22 333321 3466665321110 0
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEe-------ecCCCccc-ceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-------KKPDGGKL-KGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~-------~~~~~~~~-~~~~~~~DPdG~~iel~~~ 143 (153)
. ....|++|.++|+++++++|+++|+++. .++....+ .+.++|+|||||+|||.|.
T Consensus 56 ~-------~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 56 A-------TSPFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred C-------CCcceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 0 1235899999999999999999999853 23332222 3578999999999999885
No 33
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2e-16 Score=103.09 Aligned_cols=111 Identities=24% Similarity=0.364 Sum_probs=75.7
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||+.......+ .+ ..+..+ ...+++........ +. .
T Consensus 9 l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~-------------------~~~~~l~~~~~~~~-~~---~ 61 (125)
T cd07253 9 LTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG-------------------SQKINLHPVGGEFE-PA---A 61 (125)
T ss_pred EEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC-------------------CEEEEEecCCCccC-cC---c
Confidence 7899999999999999999998754321 11 122211 24566643222111 00 0
Q ss_pred CCCCCCCCCcceEEEEeCC-HHHHHHHHHhcCCeEeecCCC--c--ccceEEEEECCCCCEEEEec
Q 031774 82 HNGNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPDG--G--KLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~d-i~~~~~~l~~~G~~~~~~~~~--~--~~~~~~~~~DPdG~~iel~~ 142 (153)
.....+..|++|.+++ +++++++|+++|+++...|.. + ..++.+||+|||||+||+.+
T Consensus 62 ---~~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 62 ---GSPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ---cCCCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 1122477899999975 999999999999999876632 1 12357899999999999986
No 34
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.73 E-value=2e-16 Score=103.33 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=77.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCc-cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
.|.|+|++++++||+++|||+........+. .....++..... .++..|++.........
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~~---- 66 (126)
T cd08346 6 TLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLG---------------SPGTLLTFFEWPDAGPK---- 66 (126)
T ss_pred EEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCC---------------CCCCEEEEEecCCCCCC----
Confidence 3789999999999999999998876543221 112222322100 01456777643222110
Q ss_pred CCCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 80 GYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
......+..|++|.++ ++++++++++++|+++...+.. ...+.+||+||+||+|||+
T Consensus 67 ----~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 67 ----GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred ----CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 0112246789999998 4799999999999998765433 2245789999999999985
No 35
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=9.4e-17 Score=105.32 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=73.5
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|+++|++||++ |||+.......+. ... +. .++ ...|.+........ +...
T Consensus 6 l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~-~~-~~~------------------~~~l~l~~~~~~~~---~~~~ 59 (124)
T cd09012 6 LPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AAC-MV-ISD------------------NIFVMLLTEDFFQT---FTPK 59 (124)
T ss_pred eecCCHHHHHHHHHH-CCCEEccccCCCC--eEE-EE-ECC------------------ceEEEEEcHHHHhh---ccCC
Confidence 789999999999976 9999875433222 111 11 111 23455543211000 0000
Q ss_pred CCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 82 HNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
......+.+..|++|.++ ++++++++++++|+++..+|....+++.+||+|||||+|||+.
T Consensus 60 ~~~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 60 PIADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CcccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 000011234579999998 5889999999999999988766555567899999999999974
No 36
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.73 E-value=5.6e-16 Score=102.70 Aligned_cols=112 Identities=21% Similarity=0.362 Sum_probs=79.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++||+++......+ .....+|+..++. ...+.+... ..
T Consensus 4 ~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~--~~------- 56 (131)
T cd08343 4 VLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED-----------------HHDLALFPG--PE------- 56 (131)
T ss_pred EEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC-----------------cceEEEEcC--CC-------
Confidence 37899999999999999999988664432 2233455553221 234554321 00
Q ss_pred CCCCCCCCCCcceEEEEeCCH---HHHHHHHHhcCCeEeecCCCcc--cceEEEEECCCCCEEEEeccCcc
Q 031774 81 YHNGNSEPRGFGHIGITVDDV---YKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLKTI 146 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di---~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~~~~~ 146 (153)
..++.|++|.|+|+ ++++++++++|+++...|.... ..+.+||+|||||.|||.+....
T Consensus 57 -------~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 57 -------RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred -------CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 13678999999986 4788999999999987664322 23568899999999999986543
No 37
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.73 E-value=2.8e-16 Score=107.53 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=77.8
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..+.. . ...+...+.. .+..|++........
T Consensus 6 ~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~----------------~~~~l~l~~~~~~~~------ 58 (157)
T cd08347 6 TLTVRDPEATAAFLTDVLGFREVGEEG--D---RVRLEEGGGG----------------PGAVVDVLEEPDQPR------ 58 (157)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEEeeeC--C---EEEEEecCCC----------------CCCEEEEEeCCCCCC------
Confidence 378999999999999999999987643 1 1222222100 146777765321110
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
. .....++.|+||.|+| +++++++|+++|+.+.... .....+.+||+|||||.|||.+..
T Consensus 59 ~---~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~-~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 59 G---RPGAGTVHHVAFRVPDDEELEAWKERLEALGLPVSGIV-DRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred C---cccCCceEEEEEECCCHHHHHHHHHHHHHCCCCccccc-ccccEEEEEEECCCCcEEEEEECC
Confidence 0 1112478899999998 9999999999999765433 222345789999999999999864
No 38
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.73 E-value=2.4e-16 Score=105.57 Aligned_cols=109 Identities=21% Similarity=0.362 Sum_probs=76.0
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..... ..+++..+ +..+.+... +.. + .
T Consensus 10 L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~-------------------g~~l~l~~~--~~~-~----~ 57 (139)
T PRK04101 10 FSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN-------------------GLWIALNEE--KDI-P----R 57 (139)
T ss_pred EEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC-------------------CeEEEeecc--CCC-C----C
Confidence 78999999999999999999875421 12333322 244444321 110 0 0
Q ss_pred CCCCCCCCCcceEEEEeC--CHHHHHHHHHhcCCeEeecCCCc-ccceEEEEECCCCCEEEEeccCc
Q 031774 82 HNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
.....++.|++|.++ |+++++++++++|+++...+... ..++.+||+|||||+|||.+...
T Consensus 58 ---~~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 58 ---NEIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred ---ccCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCCH
Confidence 011236789999998 99999999999999987655332 23467899999999999998653
No 39
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.72 E-value=8.6e-17 Score=106.79 Aligned_cols=112 Identities=19% Similarity=0.287 Sum_probs=76.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..... . .+++..+ +..+.+...... +
T Consensus 5 ~l~V~Dl~~a~~FY~~~LG~~~~~~~~--~----~~~~~~~-------------------~~~l~l~~~~~~---~---- 52 (131)
T cd08363 5 TFSVSNLDKSISFYKHVFMEKLLVLGE--K----TAYFTIG-------------------GTWLALNEEPDI---P---- 52 (131)
T ss_pred EEEECCHHHHHHHHHHhhCCEEeccCC--c----cceEeeC-------------------ceEEEEEccCCC---C----
Confidence 378999999999999999999865321 1 1222221 345555322110 0
Q ss_pred CCCCCCCCCCcceEEEEeCC--HHHHHHHHHhcCCeEeecCCCc-ccceEEEEECCCCCEEEEeccCccc
Q 031774 81 YHNGNSEPRGFGHIGITVDD--VYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDLKTIG 147 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d--i~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iel~~~~~~~ 147 (153)
. .....++.|++|.+++ +++++++|+++|+++...+... ..++.+||+|||||+|||.+.....
T Consensus 53 ~---~~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~~~ 119 (131)
T cd08363 53 R---NEIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTLAE 119 (131)
T ss_pred c---CCcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcHHH
Confidence 0 1112367899999984 9999999999999987554322 2346789999999999999976544
No 40
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=3.5e-16 Score=104.14 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=75.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++||+++..... . ...|+..++.. ....+.+... +.
T Consensus 8 ~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~---------------~~~~i~l~~~--~~------- 58 (134)
T cd08360 8 VLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGG---------------DHHNLFLIKT--PA------- 58 (134)
T ss_pred EEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCC---------------CCcEEEEecC--CC-------
Confidence 378999999999999999999876532 1 12345432100 1345555321 10
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHH---HHHHhcCCeEeecCCCccc--ceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~ 144 (153)
...++.|++|.|+|++++. ++|+++|+++...|..... ..++||+||+||.|||....
T Consensus 59 ------~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 59 ------PMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred ------CCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 0137899999999988766 5999999998765533222 24689999999999998754
No 41
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=3.6e-16 Score=102.52 Aligned_cols=102 Identities=18% Similarity=0.356 Sum_probs=71.8
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|+++|++||+++|||+..... ..+.. +..+. +..+++... ..
T Consensus 10 l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~--~~~~~------------------~~~l~~~~~--~~-------- 55 (123)
T cd08351 10 VPARDREASAEFYAEILGLPWAKPF----GPFAV--VKLDN------------------GVSLDFAQP--DG-------- 55 (123)
T ss_pred EEcCCHHHHHHHHHHhcCCEeeecc----CCEEE--EEcCC------------------CcEEEEecC--CC--------
Confidence 7899999999999999999987632 11211 21111 234554321 10
Q ss_pred CCCCCCCCCcceEEEEeC--CHHHHHHHHHhcCCeEeecCCCc--------ccceEEEEECCCCCEEEEecc
Q 031774 82 HNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGG--------KLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~~--------~~~~~~~~~DPdG~~iel~~~ 143 (153)
..+..|++|.++ |+++++++++++|+++...|... ..++.+||+|||||.|||++.
T Consensus 56 ------~~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 56 ------EIPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred ------CCCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 013479999887 69999999999999987665321 224689999999999999985
No 42
>PLN02300 lactoylglutathione lyase
Probab=99.71 E-value=4.5e-16 Score=116.03 Aligned_cols=124 Identities=31% Similarity=0.554 Sum_probs=89.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++.+||+++|||++......++.++..+++..++.. ....+++....+.. +
T Consensus 159 ~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~------~ 217 (286)
T PLN02300 159 MLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPED---------------KTTVLELTYNYGVT------E 217 (286)
T ss_pred EEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCC---------------CccEEEEeecCCCC------c
Confidence 37899999999999999999998755545555666666542210 02356664332211 1
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc--ceEEEEECCCCCEEEEeccCccccc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLKTIGKI 149 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~~~ 149 (153)
+..+ .+..|++|.|+|+++++++++++|+++..+|...+. ++.++|+|||||.|+|++...+-|.
T Consensus 218 ~~~g----~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~ 284 (286)
T PLN02300 218 YTKG----NAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKE 284 (286)
T ss_pred cccC----CceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhh
Confidence 2112 377899999999999999999999999988754332 3578899999999999998776543
No 43
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=2.6e-16 Score=104.42 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=73.6
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccE-EEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
|.|+|++++++||+++||++...+........ ...+.. .++..+++... ...
T Consensus 10 l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~l~~~--~~~------ 62 (131)
T cd08364 10 LIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-------------------IGGLWIAIMEG--DSL------ 62 (131)
T ss_pred EEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-------------------cCCeEEEEecC--CCC------
Confidence 78999999999999999998765532111000 000110 11345555421 110
Q ss_pred CCCCCCCCCCcceEEEEeC--CHHHHHHHHHhcCCeEeecCCCc-ccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
..++..|++|.++ ++++++++|+++|+++..+.... ..++.+||+|||||.|||.....
T Consensus 63 ------~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~~ 124 (131)
T cd08364 63 ------QERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGTL 124 (131)
T ss_pred ------CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCCH
Confidence 0125789999998 79999999999999886543211 12468999999999999998653
No 44
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.71 E-value=4.2e-16 Score=101.89 Aligned_cols=107 Identities=23% Similarity=0.325 Sum_probs=72.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..... +.. +++...+. .....+.+. ...
T Consensus 9 ~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~---~~~~~~~~---------------~~~~~~~l~--~~~-------- 58 (122)
T cd07265 9 QLRVLDLEEAIKHYREVLGLDEVGRDD--QGR---VYLKAWDE---------------FDHHSIVLR--EAD-------- 58 (122)
T ss_pred EEEeCCHHHHHHHHHhccCCEeeeecC--Cce---EEEEccCC---------------CcccEEEec--cCC--------
Confidence 378999999999999999999876532 111 22322110 002233331 100
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCc--ccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~ 144 (153)
..+..|++|.++ |+++++++|+++|+++...|... ..+..+||+|||||+|||+...
T Consensus 59 -------~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 59 -------TAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred -------CCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 125789999997 79999999999999988655322 2245789999999999998753
No 45
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=5.4e-16 Score=105.74 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=75.4
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecC---CccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 78 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 78 (153)
|.|+|++++++||+++|||++......+ +.....+|+..++. ++.+.+... +
T Consensus 15 l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~~~~~--~------ 69 (154)
T cd07237 15 LATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR-----------------HHSLALAEG--P------ 69 (154)
T ss_pred EEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC-----------------CCCEEEEcC--C------
Confidence 7899999999999999999987643221 11223444443211 233444211 0
Q ss_pred CCCCCCCCCCCCcceEEEEeCCHH---HHHHHHHhcCCeEeecCCCcc--cceEEEEECCCCCEEEEeccC
Q 031774 79 KGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 79 ~~~~~~~~~~~g~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~~~ 144 (153)
.+.++.||+|.|+|++ +++++|+++|+++...+.... ..+.+|++||+||.|||....
T Consensus 70 --------~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 70 --------GPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred --------CCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 1137889999998755 689999999999987663322 235789999999999998753
No 46
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.71 E-value=3.3e-16 Score=102.32 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=72.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..... . . ..++..++. +..+.+.. .+
T Consensus 7 ~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-~--~~~~~~~~~-----------------~~~~~l~~--~~-------- 54 (120)
T cd07252 7 GVESSDLDAWRRFATDVLGLQVGDRPE--D-G--ALYLRMDDR-----------------AWRIAVHP--GE-------- 54 (120)
T ss_pred EEEeCCHHHHHHHHHhccCceeccCCC--C-C--eEEEEccCC-----------------ceEEEEEe--CC--------
Confidence 478999999999999999999865421 1 1 223332211 23444421 11
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCC----cccceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iel~~~ 143 (153)
..+..|++|.+++ +++++++|+++|+++...+.. ...++.+||+|||||.|||+..
T Consensus 55 -------~~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 55 -------ADDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred -------CCceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 0256799999974 999999999999999865421 1123578999999999999864
No 47
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=8e-16 Score=100.70 Aligned_cols=112 Identities=25% Similarity=0.410 Sum_probs=76.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|++++++||+++|||++.... + . .+++..++. ...|.+........
T Consensus 7 ~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~-----------------~~~l~l~~~~~~~~------ 57 (125)
T cd07255 7 TLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGK-----------------RPLLVLEEDPDAPP------ 57 (125)
T ss_pred EEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCC-----------------eEEEEEEeCCCCCc------
Confidence 37899999999999999999998762 1 1 233443210 24555543221100
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
. .....+..|++|.++ ++++++++|+++|+++..+... ..++.+||+|||||+|||....+
T Consensus 58 ~---~~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 58 A---PPGATGLYHFAILLPSRADLAAALRRLIELGIPLVGASDH-LVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred c---cCCCCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccccc-cceeEEEEECCCCCEEEEEEecC
Confidence 0 011236789999997 4999999999999987654332 23457899999999999987654
No 48
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.70 E-value=8.3e-16 Score=105.54 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|+++|++||+++|||++......+.......++..++. ...+.+.. +
T Consensus 9 l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~l~~--~---------- 59 (161)
T cd07256 9 LRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG-----------------VHDTALTG--G---------- 59 (161)
T ss_pred EecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC-----------------cceEEEec--C----------
Confidence 789999999999999999998754432222222344432211 22333321 0
Q ss_pred CCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeE--eecCCC-ccc-ceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVDD---VYKACERFERLGVEF--AKKPDG-GKL-KGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~--~~~~~~-~~~-~~~~~~~DPdG~~iel~~~~ 144 (153)
...++.|++|.++| +++++++|+++|+.+ ...|.. +.. ..++||+|||||+|||+...
T Consensus 60 -----~~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 60 -----NGPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred -----CCCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 01267899999986 788889999999863 233321 211 24689999999999998644
No 49
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.6e-15 Score=99.75 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=77.9
Q ss_pred CeeecChhhhHHHHhhhc---CCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 77 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 77 (153)
.|.|+|++++++||+++| ||++..... . .. .|.... ++..+.+........ +.
T Consensus 6 ~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~--~~~~~~------------------~~~~i~l~~~~~~~~-~~ 61 (128)
T cd07242 6 ELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GR--SWRAGD------------------GGTYLVLQQADGESA-GR 61 (128)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-Cc--eEEecC------------------CceEEEEEecccCCC-cc
Confidence 378999999999999999 999987642 1 11 122111 146677754322211 10
Q ss_pred CCCCCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCC----cccceEEEEECCCCCEEEEecc
Q 031774 78 FKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 78 ~~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iel~~~ 143 (153)
.. ....++.|++|.|+ |+++++++|+++|+.+...+.. ....+.+|++|||||+|||+.+
T Consensus 62 ---~~---~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 62 ---HD---RRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred ---cc---cCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 10 12247789999997 4899999999999999987653 2224578999999999999853
No 50
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=5.7e-16 Score=100.28 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=69.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||++ |||++....+ .+ +++..+ +..+.+.......
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~--~~l~~~-------------------~~~l~l~~~~~~~------- 52 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND----NL--AYFRLG-------------------NCAFYLQDYYVKD------- 52 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC----CE--EEEEcC-------------------CEEEEeecCCCcc-------
Confidence 4789999999999987 9999987531 12 334332 2344442211000
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEe-----ecCCC-cccceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-----KKPDG-GKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~-----~~~~~-~~~~~~~~~~DPdG~~iel~~ 142 (153)
. ....+++|.|+|+++++++|+++|+++. .++.. ..+.+.++|+|||||+|+|.+
T Consensus 53 ~-------~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 53 W-------AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred c-------ccCCEEEEEECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 0 1235899999999999999999998743 22222 223468999999999999864
No 51
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=6.2e-16 Score=99.50 Aligned_cols=105 Identities=22% Similarity=0.355 Sum_probs=71.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||+...... . . .++..+ +..+.+... +...
T Consensus 3 ~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~-~---~~~~~~-------------------~~~l~~~~~--~~~~----- 50 (113)
T cd08345 3 TLIVKDLNKSIAFYRDILGAELIYSSS--K-E---AYFELA-------------------GLWICLMEE--DSLQ----- 50 (113)
T ss_pred eEEECCHHHHHHHHHHhcCCeeeeccC--c-e---eEEEec-------------------CeEEEeccC--CCcC-----
Confidence 478999999999999999999876532 1 1 122211 233443211 1100
Q ss_pred CCCCCCCCCCcceEEEEeC--CHHHHHHHHHhcCCeEeecCC-CcccceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel~~ 142 (153)
....+..|++|.++ |+++++++++++|+++...+. ....++.+|++|||||+|||+.
T Consensus 51 -----~~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 51 -----GPERTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred -----CCCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 01235689999995 799999999999999875432 2223457899999999999985
No 52
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=7.7e-16 Score=100.55 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=71.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..+.. . .+++...+.. ....+.+... +
T Consensus 11 ~l~v~dl~~a~~FY~~~lG~~~~~~~~--~----~~~l~~~~~~---------------~~~~~~l~~~--~-------- 59 (121)
T cd09013 11 ELLTPKPEESLWFFTDVLGLEETGREG--Q----SVYLRAWGDY---------------EHHSLKLTES--P-------- 59 (121)
T ss_pred EEEeCCHHHHHHHHHhCcCCEEEeecC--C----eEEEEeccCC---------------CccEEEEeeC--C--------
Confidence 378999999999999999999886532 1 2334321100 0233444210 0
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
..+..|++|.++ ++++++++++++|+++...+.....+..+||+|||||.|||.-.
T Consensus 60 -------~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 60 -------EAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred -------CCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 126789999997 58899999999999875332211224468999999999999864
No 53
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.69 E-value=1.6e-15 Score=104.68 Aligned_cols=111 Identities=19% Similarity=0.313 Sum_probs=74.0
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++......+.......|+.... ....+.+.. ...
T Consensus 12 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~l~~--~~~-------- 64 (166)
T cd09014 12 LLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN-----------------KVHDVAYTR--DPA-------- 64 (166)
T ss_pred EEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC-----------------CceeEEEec--CCC--------
Confidence 78999999999999999999876643332222233443211 012333321 110
Q ss_pred CCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCC-cccc-eEEEEECCCCCEEEEecc
Q 031774 82 HNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG-GKLK-GVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~-~~~~-~~~~~~DPdG~~iel~~~ 143 (153)
....++.|+||.|+| +++++++|+++|+++...|.. +... .++|++|||||+|||++.
T Consensus 65 ----~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 ----GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ----CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 012367899999986 558889999999998755533 2222 358899999999999886
No 54
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.69 E-value=1.4e-15 Score=102.54 Aligned_cols=104 Identities=20% Similarity=0.377 Sum_probs=73.1
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..... + ...|+..+.. ...+.+.. ..
T Consensus 10 i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~-----------------~~~~~l~~--~~--------- 56 (144)
T cd07239 10 LNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD-----------------HHSIAIAR--GP--------- 56 (144)
T ss_pred EECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC-----------------cceEEEcc--CC---------
Confidence 78999999999999999999864421 1 1234543221 23444421 00
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHH---HHHHhcCCeEeecCCC-ccc-ceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDG-GKL-KGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~---~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iel~~~~ 144 (153)
..++.|++|.|+|++++. ++|+++|+++...+.. +.. ..++||+||+||.|||++..
T Consensus 57 ------~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 57 ------HPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred ------CCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 126789999999877775 8999999999876532 222 34678999999999999864
No 55
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.68 E-value=3.6e-15 Score=98.90 Aligned_cols=114 Identities=25% Similarity=0.410 Sum_probs=77.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++...... . ...++..+.. ....+.+........
T Consensus 6 ~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~~----------------~~~~l~l~~~~~~~~------ 59 (134)
T cd08348 6 VLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDPD----------------EHHQIALITGRPAAP------ 59 (134)
T ss_pred EEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecCC----------------CceEEEEEecCCCCC------
Confidence 3789999999999999999998765431 1 2234432200 134566643221110
Q ss_pred CCCCCCCCCCcceEEEEeCCHH---HHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
.....++.|++|.|+|.+ +++++|+++|+++...+..+. ++.+|++||+||.|||+....
T Consensus 60 ----~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 60 ----PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHGN-AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred ----CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCCc-eeEEEEECCCCCEEEEEEcCC
Confidence 011247789999999755 688999999998887654332 356899999999999997653
No 56
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.67 E-value=3.1e-15 Score=94.68 Aligned_cols=109 Identities=29% Similarity=0.380 Sum_probs=78.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++||++......... ....++..+ +..+++........
T Consensus 3 ~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~-------------------~~~i~l~~~~~~~~------ 55 (112)
T cd06587 3 GLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG-------------------GTRLELFEGDEPAP------ 55 (112)
T ss_pred ceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC-------------------CceEEEecCCCCCC------
Confidence 378999999999999999999888754211 223334321 36777764322111
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC-CcccceEEEEECCCCCEEEE
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel 140 (153)
. ....+..|++|.++|+++++++|.++|+.+...+. .......+|+.||+||.|||
T Consensus 56 ~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 56 A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 0 11236789999999999999999999999888764 33334689999999999986
No 57
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2e-15 Score=98.04 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=73.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|.+||+++|||++.... ...+ .++..+ +..+++...........
T Consensus 3 ~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~--- 55 (121)
T cd07251 3 TLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG-------------------GLVLALFPREELAKDAG--- 55 (121)
T ss_pred eEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC-------------------CeEEEEecchhhhhhcC---
Confidence 47899999999999999999987651 1122 233321 34566643211110000
Q ss_pred CCCCCCCCCCcceEEEEe---CCHHHHHHHHHhcCCeEeecCCCccc-ceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~ 142 (153)
.... ....+..|++|.+ +|++++++++++.|+++..++...++ ++.+|++||+||+|||..
T Consensus 56 ~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 56 VPVP-PPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCCC-CCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 0000 1112334666665 57999999999999999887754443 467899999999999964
No 58
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=1.6e-15 Score=99.66 Aligned_cols=103 Identities=18% Similarity=0.277 Sum_probs=71.6
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..+.. . ..|+..++. +..+.+.. +.
T Consensus 11 ~l~v~d~~~s~~FY~~vLG~~~~~~~~--~----~~~l~~~~~-----------------~~~i~l~~--~~-------- 57 (124)
T cd08361 11 RLGTRDLAGATRFATDILGLQVAERTA--K----ATYFRSDAR-----------------DHTLVYIE--GD-------- 57 (124)
T ss_pred EEeeCCHHHHHHHHHhccCceeccCCC--C----eEEEEcCCc-----------------cEEEEEEe--CC--------
Confidence 378999999999999999999875421 1 234443211 23333321 11
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCC----cccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
.+..|++|.+++ +++++++++++|+++...+.. ...+.++||+|||||.|||+...
T Consensus 58 --------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 58 --------PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred --------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 134699999985 999999999999998765421 11134678999999999998643
No 59
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.67 E-value=2.6e-15 Score=97.02 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=69.8
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||++ |||+...+. +. .+++..++. ...+.+. ..+.
T Consensus 8 ~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~---~~~~~~~~~-----------------~~~~~~~-~~~~-------- 54 (113)
T cd07267 8 RFEHPDLDKAERFLTD-FGLEVAART---DD---ELYYRGYGT-----------------DPFVYVA-RKGE-------- 54 (113)
T ss_pred EEccCCHHHHHHHHHH-cCCEEEEec---CC---eEEEecCCC-----------------ccEEEEc-ccCC--------
Confidence 3789999999999999 999987552 11 123332110 1222221 1110
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
..++.|++|.|+|.+++.+.+++.|..+...+.....++.+||+|||||.|||+-.
T Consensus 55 -------~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 55 -------KARFVGAAFEAASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred -------cCcccEEEEEECCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 12678999999999999999999999877544311224578999999999999753
No 60
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.67 E-value=1.2e-16 Score=104.38 Aligned_cols=116 Identities=29% Similarity=0.409 Sum_probs=75.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeec--CCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDF--PEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 78 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~ 78 (153)
.|.|+|++++++||+++|||++...... ........++..+ ...+++.....+......
T Consensus 6 ~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~~ 66 (128)
T PF00903_consen 6 AIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-------------------EGHIELFLNPSPPPRASG 66 (128)
T ss_dssp EEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-------------------SSCEEEEEEESSSSSSEE
T ss_pred EEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-------------------ccceeeeeeccccccccc
Confidence 3789999999999999999999987662 2222333444432 345666554433321100
Q ss_pred CCCCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccc--eEEEEECCCCCEEEE
Q 031774 79 KGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK--GVAFIKDPDDYWIEI 140 (153)
Q Consensus 79 ~~~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~DPdG~~iel 140 (153)
... .+ .+..|+++.+. |+++++++|++.|+++...|.....+ ..+|++||+||.|||
T Consensus 67 ~~~-~~----~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 67 HSF-PE----HGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EHH-HS----HTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ccc-cc----ccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 000 00 02346666654 68899999999999999887443332 245799999999997
No 61
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=3.1e-15 Score=100.59 Aligned_cols=106 Identities=18% Similarity=0.202 Sum_probs=73.9
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..+.. . ..+|+...+.. ....+.+ .+
T Consensus 5 l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~---------------~~h~~~~----~~--------- 51 (141)
T cd07258 5 IGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNP---------------FHHTFAV----GP--------- 51 (141)
T ss_pred EecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCC---------------Ccceeee----cc---------
Confidence 78999999999999999999886642 1 24566542210 0111211 01
Q ss_pred CCCCCCCCCcceEEEEeCCH---HHHHHHHHhcCCeEeecCCCcc--cceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVDDV---YKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di---~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iel~~~~ 144 (153)
....+++|++|.|+|+ ++++++|+++|+++...|.... ..+.+||+||+|+.|||.-..
T Consensus 52 ----~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 52 ----ASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred ----CCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 0123889999999864 5779999999999887664321 235789999999999998754
No 62
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.67 E-value=2.3e-15 Score=97.31 Aligned_cols=104 Identities=24% Similarity=0.391 Sum_probs=74.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..... . .+++..+.. ....+.+... +
T Consensus 7 ~l~v~d~~~~~~FY~~~lg~~~~~~~~--~----~~~~~~~~~----------------~~~~~~~~~~--~-------- 54 (117)
T cd07240 7 ELEVPDLERALEFYTDVLGLTVLDRDA--G----SVYLRCSED----------------DHHSLVLTEG--D-------- 54 (117)
T ss_pred EEecCCHHHHHHHHHhccCcEEEeecC--C----eEEEecCCC----------------CcEEEEEEeC--C--------
Confidence 378999999999999999999987542 1 233332210 1233444211 1
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcc-cceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~ 143 (153)
..+..|++|.++ ++++++++++++|+++...+...+ .++.+|+.||+||+||++..
T Consensus 55 -------~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 55 -------EPGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred -------CCCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 125689999997 689999999999999988774333 24578999999999999864
No 63
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=1.9e-15 Score=98.80 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=72.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..... +. .++..+ ...+.+......
T Consensus 6 ~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~----~~~~~~-------------------~~~~~l~~~~~~-------- 52 (121)
T cd07244 6 TLAVSDLERSVAFYVDLLGFKLHVRWD--KG----AYLEAG-------------------DLWLCLSVDANV-------- 52 (121)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEecC--Cc----eEEecC-------------------CEEEEEecCCCC--------
Confidence 378999999999999999999876532 21 222221 223333211110
Q ss_pred CCCCCCCCCCcceEEEEe--CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v--~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
....+..|++|.+ +|+++++++++++|+++..++... +..+||.|||||.|||+...
T Consensus 53 -----~~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 53 -----GPAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred -----CCCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC--ccEEEEECCCCCEEEEEeCC
Confidence 0112567999999 579999999999999887655432 34689999999999999854
No 64
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=1.7e-15 Score=98.94 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=69.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||++..... .+ ..+... +..+.+...........
T Consensus 4 ~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~--- 55 (125)
T cd08357 4 AIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF-------------------GHQLVAHLSPNFNADAS--- 55 (125)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc-------------------CcEEEEEeccCCCcccc---
Confidence 478999999999999999999865321 11 112211 12233221111100000
Q ss_pred CCCCCCCCCCcceEE--EEeCCHHHHHHHHHhcCCeEeecCCC---cc--cceEEEEECCCCCEEEEec
Q 031774 81 YHNGNSEPRGFGHIG--ITVDDVYKACERFERLGVEFAKKPDG---GK--LKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~--f~v~di~~~~~~l~~~G~~~~~~~~~---~~--~~~~~~~~DPdG~~iel~~ 142 (153)
.........+..|++ |.++|+++++++|+++|+++..+|.. +. ..+.+||+|||||+|||..
T Consensus 56 ~~~~~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 56 DNAVDGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred cCCCCCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 000001112445765 46689999999999999999876632 11 1357899999999999964
No 65
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.66 E-value=4.4e-15 Score=96.68 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=72.2
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++||++...... + . ..|...+. ...+.+.. ....
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~-~~~~~~~~------------------~~~~~~~~--~~~~------ 54 (120)
T cd07254 6 ALNVDDLEASIAFYSKLFGVEPTKVRD--D--Y-AKFLLEDP------------------RLNFVLNE--RPGA------ 54 (120)
T ss_pred EEEeCCHHHHHHHHHHHhCCeEecccC--C--e-eEEEecCC------------------ceEEEEec--CCCC------
Confidence 378999999999999999998765431 1 1 12221110 12233321 1110
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcc---cceEEEEECCCCCEEEEecc
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~DPdG~~iel~~~ 143 (153)
...+..|++|.+++ ++++++++.++|+++...+.... ..+.+|++||+||+|||+..
T Consensus 55 ------~~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 55 ------PGGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred ------CCCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 00367899999987 88999999999999987664322 13478999999999999974
No 66
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.66 E-value=2.4e-15 Score=98.14 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=43.7
Q ss_pred CcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEe
Q 031774 90 GFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 141 (153)
Q Consensus 90 g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 141 (153)
+..|++|.++ |+++++++|+++|+++..+|...+++ +.++|+|||||+|||.
T Consensus 66 ~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 66 HRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 4568888875 89999999999999988877655554 5789999999999986
No 67
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.65 E-value=4.1e-15 Score=96.64 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=71.4
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||+...... .. +++...+. ..+.+.+. ...
T Consensus 9 l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~----------------~~~~~~~~---~~~-------- 55 (120)
T cd08362 9 LGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS----------------EHHILRLR---RSD-------- 55 (120)
T ss_pred EecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC----------------ccEEEEec---cCC--------
Confidence 78999999999999999999875421 12 23332110 01222221 110
Q ss_pred CCCCCCCCCcceEEEEe---CCHHHHHHHHHhcCCeEeecCCC--cc-cceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDG--GK-LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~~--~~-~~~~~~~~DPdG~~iel~~~~ 144 (153)
..+..|++|.+ +++++++++|+++|+++..++.. .+ .++.++|+||+||.|||+...
T Consensus 56 ------~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 56 ------RNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred ------CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 11567999999 46999999999999998876521 22 245789999999999998754
No 68
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=5.5e-15 Score=96.56 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=72.1
Q ss_pred CeeecChhhhHHHHhhh---cCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRV---LGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 77 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 77 (153)
+|.|+|+++|++||+++ ||++...+. .+ .+ ..+ ...+ +...+.+........
T Consensus 5 ~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~~-~~~-~~~~-----------------~~~~~~l~~~~~~~~--- 59 (123)
T cd07262 5 TLGVNDLERARAFYDAVLAPLGIKRVMED--GP-GA-VGY-GKGG-----------------GGPDFWVTKPFDGEP--- 59 (123)
T ss_pred EEecCcHHHHHHHHHHHHhhcCceEEeec--CC-ce-eEe-ccCC-----------------CCceEEEeccccCCC---
Confidence 47899999999999998 688887553 11 12 222 2111 135566643211100
Q ss_pred CCCCCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcc----cceEEEEECCCCCEEEEe
Q 031774 78 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK----LKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 78 ~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~----~~~~~~~~DPdG~~iel~ 141 (153)
. ...+..|++|.|++ +++++++++++|+.+...|.... ..+.+||+|||||.|||+
T Consensus 60 ---~-----~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 60 ---A-----TAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ---C-----CCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 0 11245799999986 78899999999999887764322 223689999999999996
No 69
>PRK06724 hypothetical protein; Provisional
Probab=99.65 E-value=5.8e-15 Score=97.71 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=44.7
Q ss_pred CcceEEEEe---CCHHHHHHHHHhcCCeEeecCCCc---ccc-eEEEEECCCCCEEEEeccC
Q 031774 90 GFGHIGITV---DDVYKACERFERLGVEFAKKPDGG---KLK-GVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 90 g~~hl~f~v---~di~~~~~~l~~~G~~~~~~~~~~---~~~-~~~~~~DPdG~~iel~~~~ 144 (153)
|..|+||.+ +++++++++|+++|+++..+|... ..+ +.+||+|||||.|||....
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 668999998 689999999999999998666331 123 5788999999999998753
No 70
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.62 E-value=1.3e-14 Score=108.75 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=72.0
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccE-EEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
.|.|+|++++++||+++|||++......+.... ...|+..+.. ...+.+.. .
T Consensus 150 ~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--~-------- 202 (303)
T TIGR03211 150 LLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-----------------AHDIAFVG--D-------- 202 (303)
T ss_pred eEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-----------------Ccccceec--C--------
Confidence 378999999999999999999876544332221 2334432110 11122110 0
Q ss_pred CCCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCC-cc-cceEEEEECCCCCEEEEe
Q 031774 80 GYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iel~ 141 (153)
..+++++|+||.|+| +++++++|+++|+++...|.. +. .+.++||+|||||+|||.
T Consensus 203 ------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 203 ------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred ------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 011247899999996 556888999999998876642 22 235799999999999997
No 71
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.62 E-value=8.4e-15 Score=95.42 Aligned_cols=104 Identities=26% Similarity=0.321 Sum_probs=70.6
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..... .+ +++...... ....+.+.. .+
T Consensus 10 l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~---------------~~~~~~~~~--~~--------- 57 (121)
T cd07266 10 LRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEF---------------IHHSLVLTK--AP--------- 57 (121)
T ss_pred EEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCC---------------ceEEEEEee--CC---------
Confidence 78999999999999999999875421 11 233211100 012333321 10
Q ss_pred CCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCC-Cccc-ceEEEEECCCCCEEEEecc
Q 031774 82 HNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD-GGKL-KGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~-~~~~-~~~~~~~DPdG~~iel~~~ 143 (153)
..+..|++|.+. |+++++++++++|+++...|. ..+. +..+|+.|||||+|||+..
T Consensus 58 ------~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 58 ------VAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ------CCceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 126789999994 799999999999999876532 2222 3578999999999999864
No 72
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.61 E-value=2.4e-14 Score=92.28 Aligned_cols=100 Identities=20% Similarity=0.336 Sum_probs=65.1
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+ .|||++..+. + .. .+...+. ....+.+.. ...
T Consensus 8 l~v~d~~~s~~FY~-~lG~~~~~~~---~-~~--~~~~~~~-----------------~~~~~~~~~--~~~-------- 53 (112)
T cd08344 8 LEVPDLEVARRFYE-AFGLDVREEG---D-GL--ELRTAGN-----------------DHRWARLLE--GAR-------- 53 (112)
T ss_pred EecCCHHHHHHHHH-HhCCcEEeec---C-ce--EEEecCC-----------------CceEEEeec--CCC--------
Confidence 78999999999997 6999987542 1 11 1211111 012233321 110
Q ss_pred CCCCCCCCCcce--EEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 82 HNGNSEPRGFGH--IGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 82 ~~~~~~~~g~~h--l~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
.+..| +.+.++|+++++++++++|+++...+... ..+.+||.|||||.|||...
T Consensus 54 -------~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~~-~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 54 -------KRLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPGA-DPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred -------CceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCcC-CCCEEEEECCCCCEEEEecC
Confidence 12334 55556899999999999999988665222 23468999999999999864
No 73
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.60 E-value=4.4e-14 Score=92.19 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=77.3
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||.++||++........+..+ .....++.. + +..+.- .+. .
T Consensus 15 i~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~--~-------------gG~l~~----~~~-------~ 66 (127)
T COG3324 15 LPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAG--A-------------GGGLMA----RPG-------S 66 (127)
T ss_pred eecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCcc--c-------------cceecc----CCc-------C
Confidence 67999999999999999999998755433332 323222110 0 011110 000 1
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcc-cceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~~ 144 (153)
..+ .+..++.|.|+|+++..+|..++|.+++.++..-+ .++.+.+.||+||+|.|+++.
T Consensus 67 ~p~----~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 67 PPG----GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCC----CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 110 23458889999999999999999999999997765 567788999999999999753
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.58 E-value=5.1e-14 Score=104.88 Aligned_cols=109 Identities=22% Similarity=0.399 Sum_probs=72.8
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCC--c-cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--M-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 77 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 77 (153)
.|.|+|++++++||+++|||++......+. + .+..+|+..++. ++.+.+.. .+
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~-----------------~~~~~l~~--~~----- 202 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER-----------------HHSLAFAA--GP----- 202 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC-----------------cceEEEec--CC-----
Confidence 378999999999999999999876543211 1 122445544221 23333321 11
Q ss_pred CCCCCCCCCCCCCcceEEEEeCCHHH---HHHHHHhcCCeEeecCCC-cc-cceEEEEECCCCCEEEEecc
Q 031774 78 FKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 78 ~~~~~~~~~~~~g~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iel~~~ 143 (153)
...+++|++|+|+|+++ ++++|+++|+ ....+.. +. ...++|++||+||+||+...
T Consensus 203 ---------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 203 ---------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred ---------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 11368899999998776 8999999999 5444422 22 23478999999999999863
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.58 E-value=6.5e-14 Score=104.56 Aligned_cols=109 Identities=25% Similarity=0.401 Sum_probs=72.3
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|+++|++||+++|||++......+.......++..+.. .+.+.+.. .
T Consensus 142 l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--~---------- 192 (294)
T TIGR02295 142 VFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-----------------VHDIALTN--G---------- 192 (294)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-----------------cCceEeec--C----------
Confidence 789999999999999999998765433333333344432110 12232210 0
Q ss_pred CCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCe--EeecCCC-cc-cceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVDD---VYKACERFERLGVE--FAKKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~--~~~~~~~-~~-~~~~~~~~DPdG~~iel~~~~ 144 (153)
...+++|+||.|+| +++++++|+++|++ +...|.. +. ...++|++||+||+|||....
T Consensus 193 -----~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 193 -----NGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred -----CCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 01378999999998 55678999999987 5444422 21 124689999999999998743
No 76
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.52 E-value=2.5e-13 Score=101.87 Aligned_cols=107 Identities=23% Similarity=0.301 Sum_probs=73.7
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++++++||+++|||++..+.. . .+++...+. .....+.+.. .
T Consensus 9 ~l~V~Dle~s~~FY~~~LG~~~~~~~~--~----~~~~~~~~~---------------~~~~~~~l~~--~--------- 56 (303)
T TIGR03211 9 ELRVLDLEESLKHYTDVLGLEETGRDG--Q----RVYLKAWDE---------------WDHYSVILTE--A--------- 56 (303)
T ss_pred EEEeCCHHHHHHHHHHhcCCEEeeecC--c----eEEEEeccc---------------cccceEeecc--C---------
Confidence 378999999999999999999876532 1 122322110 0022333321 0
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCC--CcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
...++.|++|.|+ |+++++++|+++|+++...+. ....++.+||+|||||.|||.+...
T Consensus 57 ------~~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 57 ------DTAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred ------CCCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 0126789999998 799999999999999876553 1122457899999999999998543
No 77
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.52 E-value=3.1e-13 Score=100.88 Aligned_cols=104 Identities=27% Similarity=0.392 Sum_probs=72.7
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||+++|||++..... . .+++...... ....+.+.. .+
T Consensus 10 l~v~Dl~~s~~FY~~vLGl~~~~~~~--~----~~~~~~~~~~---------------~~~~l~l~~--~~--------- 57 (294)
T TIGR02295 10 LRVTDLDKSREFYVDLLGFRETESDK--E----YIYLRGIEEF---------------QHHSLVLTK--AP--------- 57 (294)
T ss_pred EEeCCHHHHHHHHHHccCCEEEEecC--C----eEEEeccCcC---------------CceEEEeee--CC---------
Confidence 78999999999999999999876532 1 1233211100 012333321 10
Q ss_pred CCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 82 HNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
..+..|++|.|+ |+++++++|+++|+++...+..+. .+.+||+|||||.|||+...
T Consensus 58 ------~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~-~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 58 ------SAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGGQ-PEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred ------CcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCCC-ceEEEEECCCCCEEEEEEch
Confidence 125789999997 789999999999999887654332 36789999999999999744
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.49 E-value=1.3e-13 Score=88.62 Aligned_cols=93 Identities=27% Similarity=0.364 Sum_probs=68.9
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|+++|++||+++||++.......+.......++..++ +...|||+.+..... ..
T Consensus 5 i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~-----------------~~~~iELi~p~~~~~-----~~ 62 (109)
T PF13669_consen 5 IVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGD-----------------GPVQIELIQPLDGDS-----PL 62 (109)
T ss_dssp EEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETT-----------------ETEEEEEEEESSTTC-----HH
T ss_pred EEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCC-----------------CcEEEEEEEeCCCCc-----cc
Confidence 68999999999999999999887665555556555655432 126899987644331 01
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecC
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 119 (153)
.. ...|++||||.|+|++++.++|+++|+++...+
T Consensus 63 ~~---~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 63 DR---GGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HH---TSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred cc---CCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 10 234899999999999999999999999988654
No 79
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.49 E-value=6.2e-13 Score=99.06 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=72.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|+++|++||+++|||+...+.. + + ..|+..+.. +..+.+.. .+.
T Consensus 8 ~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~-~--~~~~~~~~~-----------------~~~~~l~~--~~~------- 56 (286)
T TIGR03213 8 GIGVSDVDAWREFATEVLGMMVASEGE--N-D--ALYLRLDSR-----------------AHRIAVHP--GES------- 56 (286)
T ss_pred EEEeCCHHHHHHHHHhccCcccccCCC--C-c--eEEEEcCCC-----------------ceEEEEEE--CCc-------
Confidence 378999999999999999998765321 1 1 123333210 23343321 110
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCC----CcccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~----~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
.+..|++|.|++ ++++.++|+++|+++...+. .....+.+||.|||||.|||+...
T Consensus 57 --------~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 57 --------DDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred --------CCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 146799999998 89999999999999886542 111235689999999999999743
No 80
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3e-12 Score=90.73 Aligned_cols=114 Identities=39% Similarity=0.676 Sum_probs=89.4
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCC-----------ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEec
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 69 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~ 69 (153)
++.|-|..++++||+++|||++.+..+.++ ..|+-.|++++. ++. ++++||..+
T Consensus 22 VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGp-----Eds----------hFViELTYN 86 (299)
T KOG2943|consen 22 VFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGP-----EDS----------HFVIELTYN 86 (299)
T ss_pred eEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCC-----Ccc----------cEEEEEEec
Confidence 357899999999999999999999877766 567667777753 332 789999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCcc
Q 031774 70 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 146 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 146 (153)
.+-.. |..|+ ++.||.+.++|+-..++++...|. .+.....+++.||||+.++|+++...
T Consensus 87 YgV~~------YelGn----dfg~i~I~s~dv~~~ve~v~~p~~-------~~~g~~~~~v~dPdGykF~l~~~~p~ 146 (299)
T KOG2943|consen 87 YGVSK------YELGN----DFGGITIASDDVFSKVEKVNAPGG-------KGSGCGIAFVKDPDGYKFYLIDRGPQ 146 (299)
T ss_pred cCccc------eeccC----CcccEEEeHHHHHHHHHHhcCcCC-------cccceEEEEEECCCCcEEEEeccCCC
Confidence 76553 77777 899999999999988888887665 12222357899999999999985543
No 81
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.36 E-value=5.3e-11 Score=78.57 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=69.8
Q ss_pred eee-cChhhhHHHHhhhcCCEEeEEeecCCc----------cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 031774 2 FRI-KDPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 70 (153)
Q Consensus 2 l~v-~d~~~a~~FY~~~lG~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 70 (153)
|.+ .|.++|++||+++||+++......++. .+..+.+.. ++..|.+....
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i-------------------~g~~l~~~d~~ 65 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTI-------------------GGQRLMASDGG 65 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEE-------------------CCEEEEEEcCC
Confidence 567 899999999999999999987643211 111222222 12344443221
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEe
Q 031774 71 GTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 141 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~ 141 (153)
+... . .+.+..++++.++| +++++++|.+.| ++..++...+++ +..+++||+|+.|+|.
T Consensus 66 -~~~~-----~-----~~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 66 -PGFP-----F-----TFGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred -CCCC-----C-----CCCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 1100 0 11234689999986 778889977665 888777655443 4788999999999973
No 82
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.35 E-value=1.5e-11 Score=77.83 Aligned_cols=121 Identities=21% Similarity=0.325 Sum_probs=75.4
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||.++||++.-++.+. -....|.+. +..+++........+. +.
T Consensus 10 ~pV~Dl~~tr~FYgevlG~~~GRstd~---wvdfDfyGH--------------------Q~v~Hl~~q~~~~~~g---~V 63 (138)
T COG3565 10 IPVNDLDETRRFYGEVLGCKEGRSTDT---WVDFDFYGH--------------------QVVAHLTPQPDSQGSG---KV 63 (138)
T ss_pred eeccccHHHHhhhhhhcccccccccce---EEEeeeccc--------------------EEEEEecCCcccccCc---cc
Confidence 679999999999999999998876431 011222221 2233332111111111 11
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCC---ccc--ceEEEEECCCCCEEEEeccCccccc
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---GKL--KGVAFIKDPDDYWIEIFDLKTIGKI 149 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~---~~~--~~~~~~~DPdG~~iel~~~~~~~~~ 149 (153)
. +..-+....-+.+.++|+.++.++|+++|+....+|.- |.. .+.+|+.||.||-+|+-.-......
T Consensus 64 ~-~~~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e~v 135 (138)
T COG3565 64 D-GHGVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQEQV 135 (138)
T ss_pred C-CCCCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchhhh
Confidence 1 11122233456678889999999999999999888732 222 2478899999999999766554443
No 83
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.34 E-value=2e-11 Score=88.21 Aligned_cols=111 Identities=17% Similarity=0.312 Sum_probs=76.0
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
.|.|+|++.+..||+++||+++..+... .+.++.++ ...|.|.+.......
T Consensus 15 ~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg------------------~~LL~L~q~~~a~~~----- 65 (265)
T COG2514 15 TLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG------------------TPLLTLEQFPDARRP----- 65 (265)
T ss_pred EEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC------------------EEEEEEEeCCCCCCC-----
Confidence 3789999999999999999999987532 12233221 245666543222110
Q ss_pred CCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
. ....|+.|++|-+++ +..++.++.+.|+.+...-. ....-.+||.||+||-|||.-.+.
T Consensus 66 ~----~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~D-H~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 66 P----PRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGASD-HLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred C----ccccceeeeeeecCCHHHHHHHHHHHHhcCCcccccCc-chhheeeeecCCCCCeEEEEecCC
Confidence 0 112489999999985 77888999999988763322 222236999999999999998643
No 84
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.33 E-value=1.7e-10 Score=76.48 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=79.9
Q ss_pred eeec-ChhhhHHHHhhhcCCEEeEEeecCCc----------cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEecc
Q 031774 2 FRIK-DPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 70 (153)
Q Consensus 2 l~v~-d~~~a~~FY~~~lG~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~ 70 (153)
|..+ |.++|++||+++||.++......++. ....+-+..+ +..|-+....
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~-------------------g~~im~sd~~ 66 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG-------------------GSTIMLSDAF 66 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC-------------------CEEEEEecCC
Confidence 5678 99999999999999999998877662 2222222221 2333332211
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEeccCc
Q 031774 71 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~~~ 145 (153)
.... ...++ +.-..|.+.++|++++++++.+.|+++..++....++ +...++||.|+.|-|.....
T Consensus 67 ~~~~------~~~~~---~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 67 PDMG------ATEGG---GTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred CccC------cccCC---CeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCcc
Confidence 1110 11111 1235777788899999999999999999999776664 56779999999999987653
No 85
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.25 E-value=3.5e-11 Score=84.83 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=65.2
Q ss_pred eeec--ChhhhHHHHhhhcCCEEeEEeecCC--ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 031774 2 FRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 77 (153)
Q Consensus 2 l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 77 (153)
+.|+ |++++++||+++|||+.......++ .+.....+..+. +...|+|.....+.....
T Consensus 9 i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~-----------------g~i~l~L~~~~~~~~~s~ 71 (191)
T cd07250 9 GNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD-----------------GKIRIPLNEPASGKRKSQ 71 (191)
T ss_pred eecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC-----------------CcEEEEEecCCCCCCccH
Confidence 5788 9999999999999999988765432 223333343221 245677754322101100
Q ss_pred CCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecC
Q 031774 78 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 78 ~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 119 (153)
...+.. ...+.|++||||.|+|+++++++|+++|++++..|
T Consensus 72 ~~~fl~-~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 72 IQEFLE-YYGGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred HHHHHH-HhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 001100 01124899999999999999999999999998776
No 86
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2e-11 Score=86.62 Aligned_cols=116 Identities=28% Similarity=0.465 Sum_probs=83.1
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
||.|.|+++|++||.++||+++..... ....+.|+++.. +..|||....+...
T Consensus 154 ~l~VgdL~ks~kyw~~~lgM~ilekee----k~t~~~mgYgd~-----------------q~~LElt~~~~~id------ 206 (299)
T KOG2943|consen 154 MLNVGDLQKSIKYWEKLLGMKILEKEE----KYTRARMGYGDE-----------------QCVLELTYNYDVID------ 206 (299)
T ss_pred EEEehhHHHHHHHHHHHhCcchhhhhh----hhhhhhhccCCc-----------------ceEEEEEeccCccc------
Confidence 588999999999999999999997522 245567777653 57899987655432
Q ss_pred CCCCCCCCCCcceEEEEe--CCHHHHHHHHHhcCCeEeecC----CCcccce-EEEEECCCCCEEEEeccCccccc
Q 031774 81 YHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKP----DGGKLKG-VAFIKDPDDYWIEIFDLKTIGKI 149 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v--~di~~~~~~l~~~G~~~~~~~----~~~~~~~-~~~~~DPdG~~iel~~~~~~~~~ 149 (153)
+. .|+..++|.+ +++..+.+.++..+.+++.+. .++.... .+-+.||||+.|.|+....++++
T Consensus 207 ~~------kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~l 276 (299)
T KOG2943|consen 207 RA------KGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKL 276 (299)
T ss_pred cc------ccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHH
Confidence 21 2455666665 478888899999977776544 3343332 55679999999999987766553
No 87
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.24 E-value=7.8e-11 Score=75.62 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEecc-CCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW-GTESDPDFKG 80 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~-~~~~~~~~~~ 80 (153)
|.|+|++++.+||. .|||+......... ...+ +-.++ -..+.|.... .....
T Consensus 9 LPVkDL~~S~~Fy~-alGfk~Npq~sde~-a~~m--i~~~n------------------i~vMLL~~~~fq~F~~----- 61 (133)
T COG3607 9 LPVKDLEASKAFYT-ALGFKFNPQFSDED-AACM--IISDN------------------IFVMLLEEARFQTFTK----- 61 (133)
T ss_pred cchhhHHHHHHHHH-HhCcccCCCccccc-ceeE--EEecc------------------EEEEEeccHHhhhhcc-----
Confidence 67999999999995 69999987665322 1111 11111 1222222111 11110
Q ss_pred CCCCCCCCCCcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 81 YHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
..........-..+|+.+. +++++++++.++|+++..++.+...-+..-|.|||||.||+.=..
T Consensus 62 ~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 62 RQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred cccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeC
Confidence 0111112235568888886 489999999999999988775432222245799999999997543
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.06 E-value=9.5e-10 Score=71.28 Aligned_cols=125 Identities=25% Similarity=0.329 Sum_probs=68.9
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCcc---EEEEEeeccCCCCCCCCcccceeeecCCCcEEEE-EeccCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK---FSLYFLGYEDTASAPADPVDRTVWTFGKPATIEL-THNWGTESDP 76 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel-~~~~~~~~~~ 76 (153)
.|.|+|+++|++||+++||++........... ....+....... ... ...... ..........
T Consensus 7 ~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~ 73 (138)
T COG0346 7 TLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGP---GEL----------LAFFGFEGRAGTGFVGD 73 (138)
T ss_pred EEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCc---ccc----------eeecccccccccccccc
Confidence 37899999999999999999999876532211 111122111000 000 000000 0000000000
Q ss_pred CCCCCCCCCCCCCCcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 77 DFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 77 ~~~~~~~~~~~~~g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
.......+ ..+..|+++.+++ +......+...|..+..... ...+..+|++||||+.|||.+
T Consensus 74 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 74 VALGVPGG---DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred eEEeecCc---hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEeeC
Confidence 00000000 0246799999998 67777777788888765443 322337999999999999974
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.98 E-value=2.7e-09 Score=81.90 Aligned_cols=100 Identities=16% Similarity=0.319 Sum_probs=62.6
Q ss_pred eeec--ChhhhHHHHhhhcCCEEeEEeecCC--ccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCC
Q 031774 2 FRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 77 (153)
Q Consensus 2 l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~ 77 (153)
|.|+ |++++++||+++|||+......... ..+....+... .+...|+|..+........
T Consensus 164 i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~-----------------~g~~~i~L~ep~~~~~~s~ 226 (353)
T TIGR01263 164 GNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP-----------------DGKVKIPLNEPASGKDKSQ 226 (353)
T ss_pred cccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC-----------------CCcEEEEEeccCCCCCCCH
Confidence 5677 9999999999999999987655322 11111112111 1245677754311111110
Q ss_pred CCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecC
Q 031774 78 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 78 ~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~ 119 (153)
...+... ....|++||||.|+|+++++++|+++|++++..|
T Consensus 227 i~~fl~~-~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 227 IEEFLEF-YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHHHHHH-cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 0101000 1124899999999999999999999999999876
No 90
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.98 E-value=1.7e-08 Score=77.53 Aligned_cols=95 Identities=22% Similarity=0.266 Sum_probs=63.1
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|+|++++++||.+.|||+............. ..+.. +...|++.....+.+ + ...+
T Consensus 8 ~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~-~~~~~-------------------G~~~l~L~~~~~~~s-~-~~~~ 65 (353)
T TIGR01263 8 FYVGDAKQAAYYYFTRFGFEKVAKETGHREKAS-HVLRQ-------------------GQINFVLTAPYSSDS-P-AADF 65 (353)
T ss_pred EEeCCHHHHHHHHHHhcCCcEEEEeecCCceeE-EEEEe-------------------CCEEEEEecCCCCCc-h-HHHH
Confidence 689999999999999999999876322222211 11221 246677754322211 0 1011
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 120 (153)
.. ..+.+..|+||.|+|++++++++.++|+.+..+|.
T Consensus 66 ~~--~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~ 102 (353)
T TIGR01263 66 AA--KHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPV 102 (353)
T ss_pred HH--hCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCc
Confidence 11 11348899999999999999999999999987764
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.82 E-value=1.3e-08 Score=78.71 Aligned_cols=100 Identities=14% Similarity=0.282 Sum_probs=63.9
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCc-----cEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCC-CCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT-ESD 75 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~-~~~ 75 (153)
+.|+++++++.||+++|||+.......++. ++....+..++ +...|+|..+... ...
T Consensus 186 iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~-----------------g~v~ipLnEP~~~~~~~ 248 (398)
T PLN02875 186 GNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN-----------------EMVLLPLNEPTFGTKRK 248 (398)
T ss_pred echhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC-----------------CcEEEEeccCCCCCCCc
Confidence 567899999999999999999876543221 12222333211 2356777543211 111
Q ss_pred CCCCCCCCCCCCCCCcceEEEEeCCHHHHHHHHHhc----CCeEeecC
Q 031774 76 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL----GVEFAKKP 119 (153)
Q Consensus 76 ~~~~~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~----G~~~~~~~ 119 (153)
.....+...+ ...|++||||.|+||.+++++|+++ |++++..|
T Consensus 249 SqI~eFL~~~-~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 249 SQIQTYLEHN-EGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred ChHHHHHHhc-CCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 1111122111 1249999999999999999999999 99999854
No 92
>PRK10148 hypothetical protein; Provisional
Probab=98.71 E-value=2e-06 Score=58.15 Aligned_cols=52 Identities=10% Similarity=-0.114 Sum_probs=40.9
Q ss_pred cceEEEEeCCHHH---HHHHHHhcCCeEeecCCCcccc-eEEEEECCCCCEEEEecc
Q 031774 91 FGHIGITVDDVYK---ACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 91 ~~hl~f~v~di~~---~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iel~~~ 143 (153)
..+|++.++|.++ ++++| +.|.++..++....++ ++..++||.|+.|.|...
T Consensus 86 ~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 86 GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 3588888888766 55555 6899999988776664 467799999999999775
No 93
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.70 E-value=7.9e-08 Score=72.51 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred CcceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
.-..+|+.+++ ++++++++.++|++...++.+...++ -|.|||||.||++=
T Consensus 300 ~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~r--sf~D~DGH~WEi~~ 353 (357)
T PRK01037 300 GTTTLSLELECEHDFVRFLRRWEMLGGELGEQADGHFPLR--LVFDLDGHIWVVSC 353 (357)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcccccCcc--eeECCCCCEEEEEE
Confidence 34688999984 89999999999997766664433232 36899999999973
No 94
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.51 E-value=4.2e-07 Score=68.24 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=61.2
Q ss_pred ecChhhhHHHHhhhcCCEEeEEeecCCcc---EEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 4 IKDPKVSLDFYSRVLGMSLLKRLDFPEMK---FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 4 v~d~~~a~~FY~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
...++.++.||+++|||+.....+.++.. .+.++... ...+.|..+...+.+.....
T Consensus 177 ~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp--------------------~G~vrlplN~s~~~~sqi~e 236 (363)
T COG3185 177 AGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSP--------------------CGKVRLPLNESADDKSQIGE 236 (363)
T ss_pred hhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecC--------------------CCcEEeecccCCCchhHHHH
Confidence 45789999999999999999887765432 11122211 22344433322222110001
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 120 (153)
+.. ...+.|++||+|.++||-++.++|++.|++++..|.
T Consensus 237 fl~-~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 237 FLR-EYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred HHH-HhCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 110 112349999999999999999999999999998773
No 95
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.33 E-value=1.8e-05 Score=50.87 Aligned_cols=112 Identities=19% Similarity=0.315 Sum_probs=57.3
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCC
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 80 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~ 80 (153)
+|.|+|-+..++||++.|||++..+.. .++.++.... ...+.|-.. |... .+.
T Consensus 5 vlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~-----------------~erlvlEES--P~~r--tr~ 57 (125)
T PF14506_consen 5 VLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQK-----------------EERLVLEES--PSMR--TRA 57 (125)
T ss_dssp EEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT-------------------EEEEEEE----TTT---B-
T ss_pred eEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCC-----------------ceEEEEecC--Cccc--ccc
Confidence 478999999999999999999998743 2345554211 233433221 2110 011
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
+ ..+..+.++.+.+++..++ +.|.++|.++.. +..|..++.+-..+|+|+.|.|.....
T Consensus 58 V----~G~KKl~~ivIkv~~~~EI-e~LLar~~~~~~-l~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 58 V----EGPKKLNRIVIKVPNPKEI-EALLARGAQYDR-LYKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp -----SSS-SEEEEEEEESSHHHH-HHHHHC-S--SE-EEE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred c----cCcceeeEEEEEcCCHHHH-HHHHhcccccce-eEEcCCceEEEEECCCCCEEEEEEcCC
Confidence 1 1234688999999875443 344455544322 222333455557899999999987543
No 96
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.25 E-value=7.3e-06 Score=59.71 Aligned_cols=91 Identities=22% Similarity=0.364 Sum_probs=56.3
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 81 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~~~ 81 (153)
|.|.|+++|.+||+++|||+...+. +. ..|+..++- +++|.. +.|.....
T Consensus 174 L~v~~l~eA~~fY~~~LG~~~~~~~--~~----A~F~a~G~Y-----------------HHHia~-N~W~s~~~------ 223 (265)
T COG2514 174 LKVADLEEAEQFYEDVLGLEVTARG--PS----ALFLASGDY-----------------HHHLAA-NTWNSRGA------ 223 (265)
T ss_pred EEeCCHHHHHHHHHHhcCCeeeecC--Cc----ceEEecCCc-----------------ceeEEE-eccccCCC------
Confidence 7899999999999999999999872 22 245555431 233333 34444321
Q ss_pred CCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 82 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 82 ~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
..++....|+..+.+.+++-..+..... ...||+|+.|.++
T Consensus 224 ~~~~~~~~GLa~~~i~~~~~~~l~~~~~-------------------~~~Dp~G~~i~~~ 264 (265)
T COG2514 224 RPRNANASGLAWLEIHTPDPEKLDATGT-------------------RLTDPWGIVIRVV 264 (265)
T ss_pred CCCCCCCCCcceEEEEcCCccccccccc-------------------ceecCCCceEEEe
Confidence 1112233588899999887333211110 0179999999875
No 97
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.12 E-value=1.3e-05 Score=55.57 Aligned_cols=95 Identities=14% Similarity=0.239 Sum_probs=48.5
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCC-C
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF-K 79 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~-~ 79 (153)
++.|+|+++++++|++.|||.+......+..+..-..+..+ ..+||+.........+.. +
T Consensus 5 v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~-------------------~~YlEli~i~~~~~~~~~~~ 65 (175)
T PF13468_consen 5 VIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG-------------------DGYLELIAIDPEAPAPDRGR 65 (175)
T ss_dssp EEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S-------------------SSEEEEEEES-HHHSTGGGT
T ss_pred EEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC-------------------CceEEEEEeCCccccccccc
Confidence 47899999999999889999999776655433322222222 349999874222111100 0
Q ss_pred CCCCC-CCCCCCcceEEEEeCCHHHHHHHHHhcCCe
Q 031774 80 GYHNG-NSEPRGFGHIGITVDDVYKACERFERLGVE 114 (153)
Q Consensus 80 ~~~~~-~~~~~g~~hl~f~v~di~~~~~~l~~~G~~ 114 (153)
.+... .....|+.++|+.++|+++..++|++.|+.
T Consensus 66 ~~~~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 66 WFGLDRLAGGEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp -TTTHHHHT--EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred ceechhhcCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 01000 012358999999999999999999999986
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.60 E-value=0.0014 Score=51.12 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=42.5
Q ss_pred CCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCc-c---cc--eEEEEECCCCCEEEEeccC
Q 031774 89 RGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-K---LK--GVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~-~---~~--~~~~~~DPdG~~iel~~~~ 144 (153)
.+..-++|+|+|.+++++++.++|+.+..+|..- . .+ ...-+.-+.|..+-|+++.
T Consensus 91 ~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 91 LAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred CeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 4788999999999999999999999998776431 1 11 2334677778888887754
No 99
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.38 E-value=0.013 Score=37.96 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=29.3
Q ss_pred ceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 92 GHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 92 ~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
..|++.++| ++.+.++|.+.|- + ...+..+.|..|..|.|+
T Consensus 73 ~sl~i~~~~~ee~~~~f~~Ls~gG~-----~----~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKLSEGGQ-----W----FSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTTE-----T----CCEEEEEE-TTS-EEEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCC-----c----cceeEEEEeCCCCEEEeC
Confidence 688899987 5667788877775 2 124567999999999885
No 100
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.001 Score=49.78 Aligned_cols=97 Identities=11% Similarity=0.187 Sum_probs=57.1
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCcc--EEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK--FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
+.|.|...++.||+..|||+.........+. +.-.-++. +....-+.....+..+ .+-
T Consensus 23 F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~-------------------g~~vFv~~s~~~p~~~-~~G 82 (381)
T KOG0638|consen 23 FWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ-------------------GKIVFVFNSAYNPDNS-EYG 82 (381)
T ss_pred EEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc-------------------CCEEEEEecCCCCCch-hhh
Confidence 4688999999999999999998754221111 10000110 1122222222222110 000
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCC
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 120 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~ 120 (153)
...... .-|.--+||+|+|++++.+.+.++|+++..+|.
T Consensus 83 ~~l~~H--gdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~ 121 (381)
T KOG0638|consen 83 DHLVKH--GDGVKDVAFEVEDADAIFQEAVANGAKVVRPPW 121 (381)
T ss_pred hhhhhc--ccchhceEEEecchHHHHHHHHHcCCcccCCcc
Confidence 011111 225778999999999999999999999998873
No 101
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.20 E-value=0.00077 Score=45.07 Aligned_cols=113 Identities=21% Similarity=0.272 Sum_probs=63.9
Q ss_pred eeecChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCC-CCCC
Q 031774 2 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP-DFKG 80 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~-~~~~ 80 (153)
+.|.+.+++..|+ +.|||+...+... ....+ |-. +...+-|.. .+.... .+.
T Consensus 15 Fa~~~~~~l~~~~-~~lGF~~~a~hrs--k~v~l-~rQ--------------------G~I~~vln~--ep~s~a~~~~- 67 (139)
T PF14696_consen 15 FAVPDAQALAQLF-TALGFQPVARHRS--KDVTL-YRQ--------------------GDINFVLNS--EPDSFAAEFA- 67 (139)
T ss_dssp EE-SSTTSCHHHH-CCCCEEEECCECC--CSEEE-EEE--------------------TTEEEEEEE--ESTSCHHHHH-
T ss_pred EecCCHHHHHHHH-HHhCcceEEecCC--cceEE-EEe--------------------CCEEEEEeC--CCcchHHHHH-
Confidence 4577877777777 5799999987532 12222 211 134444432 221100 000
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
...| .+..-++|.|+|.+++++++.+.|.+....|.....-..--++-+.|.++-|+++..
T Consensus 68 ~~HG----~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 68 AQHG----PSVCAIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp HHHS----SEEEEEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred HhcC----CEEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecCC
Confidence 0112 378899999999999999999999998876632111234557889999999998743
No 102
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.82 E-value=0.003 Score=40.11 Aligned_cols=55 Identities=27% Similarity=0.253 Sum_probs=39.2
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCCeEeecCCCccc-ceEEEEECCCC-CEEEEeccCcc
Q 031774 92 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKL-KGVAFIKDPDD-YWIEIFDLKTI 146 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~-~~~~~~~DPdG-~~iel~~~~~~ 146 (153)
+|++|.|+|++++.+.+.+ .|+........... -+..++..++| ..|||+++...
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~ 58 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDG 58 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESST
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCC
Confidence 4999999999999999998 89876543211111 23456677877 78999997653
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.00082 Score=50.30 Aligned_cols=125 Identities=18% Similarity=0.333 Sum_probs=74.2
Q ss_pred ChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCC------CCCC
Q 031774 6 DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD------PDFK 79 (153)
Q Consensus 6 d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~------~~~~ 79 (153)
.++.+++||.+.|||..-+..+.+.-+. .|.+.. .....+....|.+..+.+.+.+ +.+-
T Consensus 190 em~sa~~wy~~~l~Fhrfwsvdd~~v~t--e~SaLr------------s~vlan~~esi~mpinEp~~G~k~ksQIqeyv 255 (381)
T KOG0638|consen 190 EMESALRWYEKCLGFHRFWSVDDSQVHT--EYSALR------------SIVLANYEESIKMPINEPAPGKKKKSQIQEYV 255 (381)
T ss_pred cchHHHHHHHHhhcccccccCCcchhhh--HHHHHH------------HHHHhcCCccEEEeccCCCCCCccHHHHHHHH
Confidence 5678999999999999888765332111 111110 0001112333444332221111 1111
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecCCC---------c---------cc----ceEEEEECCCCCE
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---------G---------KL----KGVAFIKDPDDYW 137 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~---------~---------~~----~~~~~~~DPdG~~ 137 (153)
.+.. ..|++|+++.++||-++.+.++++|++++.+|.. . .. -.+..-.|-.|++
T Consensus 256 ~y~g----G~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyL 331 (381)
T KOG0638|consen 256 EYHG----GAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYL 331 (381)
T ss_pred HhcC----CCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEE
Confidence 2322 2599999999999999999999999999988721 0 00 1244446888999
Q ss_pred EEEeccCcccc
Q 031774 138 IEIFDLKTIGK 148 (153)
Q Consensus 138 iel~~~~~~~~ 148 (153)
+.|+...-.+.
T Consensus 332 LQIFTKplqdr 342 (381)
T KOG0638|consen 332 LQIFTKPLQDR 342 (381)
T ss_pred eeeeccccCCC
Confidence 99988654433
No 104
>PF15067 FAM124: FAM124 family
Probab=96.58 E-value=0.039 Score=39.80 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=54.5
Q ss_pred eeec--ChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeeccCCCCCCCCcccceeeecCCCcEEEEEeccCCCCCCCCC
Q 031774 2 FRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 79 (153)
Q Consensus 2 l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~~~ 79 (153)
|.|+ |.+.+++||+-+|+-+....-+ + |. .|.-+... +..|.+....-+.. ..
T Consensus 134 ly~~~~N~~d~vr~Yelil~~~~~~~k~--~--FC-~F~lys~~-----------------~~~iQlsLK~lp~~---~~ 188 (236)
T PF15067_consen 134 LYCSFDNYEDMVRFYELILQREPTQQKE--D--FC-FFTLYSQP-----------------GLDIQLSLKQLPPG---MS 188 (236)
T ss_pred EEecCCCHHHHHHHHHHHhccCcceeeC--C--cE-EEEEecCC-----------------CeEEEEEeccCCCC---CC
Confidence 5677 9999999999999988765432 2 32 22222111 34444443211111 11
Q ss_pred CCCCCCCCCCCcceEEEEeCCHHHHHHHHHhcCCeEeecC-CCcccceEEEEECCCCCEEEE
Q 031774 80 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 80 ~~~~~~~~~~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~-~~~~~~~~~~~~DPdG~~iel 140 (153)
+. +.-..-+.|.|.|+-+++-- +..| .+-..++ +-..|||||.|-+
T Consensus 189 p~------p~esavLqF~V~~igqLvpL--------LPnpc~PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 189 PE------PTESAVLQFRVEDIGQLVPL--------LPNPCSPISETR-WQTEDYDGNKILL 235 (236)
T ss_pred cc------cccceEEEEEecchhhhccc--------CCCCcccccCCc-ceeeCCCCCEecc
Confidence 11 12335899999999887432 2222 1111122 4579999999854
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.77 E-value=0.047 Score=34.35 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=25.6
Q ss_pred CcceEEEEeC---CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEE
Q 031774 90 GFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 138 (153)
Q Consensus 90 g~~hl~f~v~---di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 138 (153)
.+..+-|.|+ |+.++.+++.+.++ ++..- ..++.+.||.+..|
T Consensus 53 DLe~Lkf~V~~~~Dl~~L~~~le~~~~-fidKk-----~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 53 DLEMLKFQVPKDFDLAALKSHLEEQEF-FIDKK-----EKFLVTSDPSQIEL 98 (101)
T ss_dssp SEEEEEEEES-S--HHHHHHHTTTS-E-E--TT------SEEEEE-TTS-EE
T ss_pred eeEEEEEEecCcccHHHHHHHhcccce-EecCC-----ceEEEEECCcceEE
Confidence 5667888888 68889999988433 11111 23567899988654
No 106
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.12 E-value=0.17 Score=33.24 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=38.4
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeecCC-Cc-----------ccceEEEEECCCC-CEEEEecc
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKKPD-GG-----------KLKGVAFIKDPDD-YWIEIFDL 143 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~-~~-----------~~~~~~~~~DPdG-~~iel~~~ 143 (153)
++.|+++.|+|++++.+-..+.|..+..... .+ ......++..|+| ..|||++.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 6789999999999999999999988764331 11 1112455666665 57899874
No 107
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.59 E-value=0.28 Score=33.38 Aligned_cols=56 Identities=34% Similarity=0.527 Sum_probs=39.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-cCCeEeecC-----C---Cc---------cc--ceEEEEECCCCCEEEEeccC
Q 031774 89 RGFGHIGITVDDVYKACERFER-LGVEFAKKP-----D---GG---------KL--KGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~-----~---~~---------~~--~~~~~~~DPdG~~iel~~~~ 144 (153)
+++.|+++.|.|++++.+-.++ .|.++..++ . .+ .. -...++..++|..||+++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 4789999999999999999976 798775321 0 00 11 12456666778889999965
No 108
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.95 E-value=0.54 Score=29.57 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=37.4
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcc-cceEEEEECCCCCEEEEeccC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~-~~~~~~~~DPdG~~iel~~~~ 144 (153)
++.|+++.|+|++++.+-.++ .|..+........ ....+.+..+++..++++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcC
Confidence 678999999999999999974 8998875432111 111233445667788887643
No 109
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=93.63 E-value=0.1 Score=35.95 Aligned_cols=51 Identities=27% Similarity=0.507 Sum_probs=28.2
Q ss_pred cceEEEEeCCHHHHHHHH-HhcCCeEeecCCC---cccceEEEEECCCCCEEEEeccC
Q 031774 91 FGHIGITVDDVYKACERF-ERLGVEFAKKPDG---GKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l-~~~G~~~~~~~~~---~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
+.|+.+.|+|++++.+++ ++.|+.+...... |.....++| +++ .|||+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~ 55 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAID 55 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeC
Confidence 369999999999999999 8889988743321 232335555 667 99999854
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.18 E-value=0.76 Score=28.96 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=37.6
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCC-Ccc-cceEEEEECC---CCCEEEEeccC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPD-GGK-LKGVAFIKDP---DDYWIEIFDLK 144 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~-~~~-~~~~~~~~DP---dG~~iel~~~~ 144 (153)
|+.|+++.|+|++++.+-.++ .|.++..... .+. ....+++.+. .|..++|++..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 61 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWP 61 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecC
Confidence 467999999999999999975 6998764431 111 1223455554 57788888754
No 111
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.57 E-value=1 Score=28.68 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=36.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhc----CCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 90 GFGHIGITVDDVYKACERFERL----GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~----G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
|+.|+++.|+|++++.+-..+. |.++......+ ..|+...++..+++++...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~~----~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWEDG----RSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeeccC----ceEEecCCceEEEEEeccc
Confidence 4689999999999999988776 88877654211 1333334567888887654
No 112
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=91.78 E-value=1.3 Score=26.68 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=38.7
Q ss_pred eEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEeccCcc
Q 031774 93 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 146 (153)
Q Consensus 93 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 146 (153)
|+.+.++|++++.+-+.+ .|.+........ .....++.++ +..|+|.+....
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~-~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG-GAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC-CEEEEEEecC-CceEEEecCCCC
Confidence 788999999999999997 899887665321 1234556655 789999886654
No 113
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=91.58 E-value=1 Score=27.48 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=36.3
Q ss_pred cceEEEEeCCHHHHHHHHH-hcCCeEeecCCCcccceEEEEECCCCCEEEEeccCc
Q 031774 91 FGHIGITVDDVYKACERFE-RLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~-~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
+.|+++.|+|++++.+-.. ..|.+....+... ....++..+++..++|.+...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL--FPGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC--CCceEEEeCCCcEEEEEecCC
Confidence 3699999999999999886 6788776554321 122455555556788887544
No 114
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=91.26 E-value=1.7 Score=29.38 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=35.6
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEEC--CCCCEEEEecc
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKD--PDDYWIEIFDL 143 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~D--PdG~~iel~~~ 143 (153)
|+.|+++.|+|++++.+-..+ .|.++..... + ...++.. .++..|++++.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-~---~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-D---RVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-C---EEEEEecCCCCCCEEEEEeC
Confidence 568999999999999999975 5988875432 1 1222332 35788998875
No 115
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=90.75 E-value=5 Score=31.01 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=34.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHhcCCeEeecCC----------CcccceEEEEECCC
Q 031774 89 RGFGHIGITVDDVYKACERFERLGVEFAKKPD----------GGKLKGVAFIKDPD 134 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~----------~~~~~~~~~~~DPd 134 (153)
++..-++|.|+|.+.+++++.+.|.+....+. .+..+..+|+.|.+
T Consensus 86 ps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 86 PSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred CchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 36779999999999999999999995554332 12334578888887
No 116
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=90.72 E-value=1.4 Score=27.88 Aligned_cols=52 Identities=29% Similarity=0.325 Sum_probs=36.3
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCCeEeecCCCc--ccceEEEEECCCCCEEEEeccC
Q 031774 92 GHIGITVDDVYKACERFER-LGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~--~~~~~~~~~DPdG~~iel~~~~ 144 (153)
.|+++.|+|++++.+-..+ .|.......... .....+++.. +|..++|+++.
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEEC
Confidence 5999999999999999887 788776543221 1112345543 67888888754
No 117
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.59 E-value=2.1 Score=26.48 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=35.0
Q ss_pred eEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCC--CEEEEeccC
Q 031774 93 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDD--YWIEIFDLK 144 (153)
Q Consensus 93 hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG--~~iel~~~~ 144 (153)
|+++.|.|++++.+-..+ .|.++............+.+.++++ ..+++.+..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCC
Confidence 889999999999999887 8998886542111123455666654 456666543
No 118
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=90.24 E-value=2.4 Score=28.41 Aligned_cols=56 Identities=20% Similarity=0.340 Sum_probs=36.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHh-cCCeEeecCCC----cccceEEEEE-CCCCCEEEEecc
Q 031774 88 PRGFGHIGITVDDVYKACERFER-LGVEFAKKPDG----GKLKGVAFIK-DPDDYWIEIFDL 143 (153)
Q Consensus 88 ~~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~----~~~~~~~~~~-DPdG~~iel~~~ 143 (153)
+.++.|+++.|+|++++.+-.++ .|.++...... +......|+. ++.++.+.+.+.
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 35789999999999999999876 79887643211 1111233333 455566776543
No 119
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=89.90 E-value=1.1 Score=26.98 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 100 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 100 di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
..+++.+++++.|+++..--......+.+...|.||+.+||.=.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEc
Confidence 68999999999999666432211112457789999999999643
No 120
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.94 E-value=3.9 Score=25.58 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=34.8
Q ss_pred cceEEEEeCCHHHHHHHHHh-cCCeEeec---CCCcccceEEEEECCCCCEEEEeccC
Q 031774 91 FGHIGITVDDVYKACERFER-LGVEFAKK---PDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~---~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
+.|+++.|+|++++.+-..+ .|.++... +..+. ...|+.-.+|..+++++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGF--ESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCc--eEEEEecCCCcEEEEEcCc
Confidence 46999999999999998877 58876432 21111 2234444467889998643
No 121
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=88.90 E-value=4.1 Score=26.50 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=34.6
Q ss_pred cceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 91 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
+.|+.+.|+|++++.+-.++ .|.++....... .....++. ..+..+++.+..
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~-~~~~~~~~-~g~~~l~l~~~~ 53 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE-DKASYLLR-QGDINFVLNSPL 53 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC-ceEEEEEE-cCCEEEEEecCC
Confidence 36999999999999999988 899887544221 11223333 345567776543
No 122
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=88.58 E-value=2.2 Score=26.97 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=33.8
Q ss_pred cceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 91 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
+.|+++.|+|++++.+..++ .|.++.........+...++..+.+..++|.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEec
Confidence 57999999999999999974 688775432111111123333344677888764
No 123
>PRK11478 putative lyase; Provisional
Probab=88.15 E-value=3 Score=26.52 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=33.8
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCC-CcccceEEEEECCCCCEEEEecc
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~-~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
++.|+++.|+|++++.+-..+ .|.++..... .........+.-.++..+++++.
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 61 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSF 61 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEe
Confidence 678999999999999999865 7988764321 11101011222234667888763
No 124
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=87.66 E-value=5.1 Score=25.69 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECC--CCCEEEEeccC
Q 031774 91 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFDLK 144 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP--dG~~iel~~~~ 144 (153)
+.|+.+.++|++++.+-..+ .|.++...... ....|+..+ .+..+.+++..
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~ 55 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---GGLVFLSRDPDEHHQIALITGR 55 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---CcEEEEEecCCCceEEEEEecC
Confidence 57999999999999999886 89887754421 123455443 34567777653
No 125
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.06 E-value=5.6 Score=25.01 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=34.9
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCC-CCEEEEeccC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDLK 144 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPd-G~~iel~~~~ 144 (153)
.+.|+.+.|+|++++.+-..+ .|.++..... ..+++..++ +..+.|.+..
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----STAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----CEEEEecCCCeEEEEEEeCC
Confidence 467999999999999999886 7988876531 124444444 4566666643
No 126
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.61 E-value=3.8 Score=28.74 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=39.0
Q ss_pred CcceEEEEeC--CHHHHHHHHHh-cCCeEeecCCC-c--ccceEEEEECCCC-CEEEEeccCc
Q 031774 90 GFGHIGITVD--DVYKACERFER-LGVEFAKKPDG-G--KLKGVAFIKDPDD-YWIEIFDLKT 145 (153)
Q Consensus 90 g~~hl~f~v~--di~~~~~~l~~-~G~~~~~~~~~-~--~~~~~~~~~DPdG-~~iel~~~~~ 145 (153)
++.|+++.|+ |++++.+-..+ .|.+....... . ......++..|+| ..++|.++..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5789999999 99999998755 89877653321 1 1123456777765 5688888654
No 127
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=86.43 E-value=5 Score=25.20 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=22.3
Q ss_pred ceEEEEeCCHHHHHHHHHhcCCeEe
Q 031774 92 GHIGITVDDVYKACERFERLGVEFA 116 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~~G~~~~ 116 (153)
.|+.+.|+|++++.+-.++.|.++.
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceec
Confidence 5999999999999999988898765
No 128
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=86.37 E-value=5.4 Score=24.83 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=35.1
Q ss_pred ceEEEEeCCHHHHHHHHHhc-CCeEeecCC-CcccceEEEEECCC---CCEEEEecc
Q 031774 92 GHIGITVDDVYKACERFERL-GVEFAKKPD-GGKLKGVAFIKDPD---DYWIEIFDL 143 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~~-G~~~~~~~~-~~~~~~~~~~~DPd---G~~iel~~~ 143 (153)
.|+++.|+|++++.+-..+. |.++..... .......+++..++ +..+++.+.
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEec
Confidence 69999999999999999864 998875432 21111234555444 578888764
No 129
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=86.25 E-value=6.1 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=25.1
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~ 118 (153)
++.|+++.|+|++++.+-....|..+...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 57899999999999999998899887643
No 130
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.78 E-value=3.4 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCeEeecCC--Cccc-ceEEEEECCCCCEEE
Q 031774 101 VYKACERFERLGVEFAKKPD--GGKL-KGVAFIKDPDDYWIE 139 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~--~~~~-~~~~~~~DPdG~~ie 139 (153)
+.++.+.|...|+.+...-. .|.. ...||+.|++|+.+.
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 67888899999999986442 2322 348999999998773
No 131
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=85.54 E-value=7.2 Score=27.34 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hcCCeEeecC
Q 031774 89 RGFGHIGITVDDVYKACERFE-RLGVEFAKKP 119 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~-~~G~~~~~~~ 119 (153)
..++|.+|.|.|+++..+-.. ..|.++....
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEE
Confidence 467999999999999999886 5799887553
No 132
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=85.20 E-value=7.6 Score=25.12 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECC---CCCEEEEecc
Q 031774 89 RGFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP---DDYWIEIFDL 143 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP---dG~~iel~~~ 143 (153)
..+.|+++.|+|+++..+-.++ .|.++...... ...|+..+ ..+.+.+...
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~----~~~~~~~~~~~~~~~i~l~~~ 56 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG----RGAFLRAAGGGDHHNLFLIKT 56 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC----cEEEEECCCCCCCcEEEEecC
Confidence 3678999999999999998865 69887654321 12445443 2356666553
No 133
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=84.81 E-value=6.3 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.0
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 119 (153)
++.|+++.|+|++++.+-..+ .|.++...+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~ 32 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP 32 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC
Confidence 567999999999999999876 699876553
No 134
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.29 E-value=3.2 Score=22.98 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.3
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEe
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFA 116 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~ 116 (153)
+...+.|.+++.+.+.+.|+++|++++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceEC
Confidence 456889999999999999999998763
No 135
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.93 E-value=12 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=31.7
Q ss_pred ceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 92 GHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 92 ~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
..+.+.++| +|.+.++|...|. ......+++|-.|.-|.|+-+
T Consensus 79 ~S~~v~~~~q~E~Drlwnal~~~g~---------e~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 79 FSFQVACDDQEEIDRLWNALSDNGG---------EAEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred EEEEEEcCCHHHHHHHHHHHhccCc---------chhcceeEecccCcEEEEcHH
Confidence 355566664 8888999998886 112346899999999999764
No 136
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=82.33 E-value=9.4 Score=23.66 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.0
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 119 (153)
++.|+.+.|+|+++..+-.++ .|.+.....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 678999999999999999987 798887554
No 137
>PLN02367 lactoylglutathione lyase
Probab=80.82 E-value=11 Score=27.54 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.9
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hcCCeEeecC
Q 031774 89 RGFGHIGITVDDVYKACERFE-RLGVEFAKKP 119 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~-~~G~~~~~~~ 119 (153)
-.++|.+++|.|+++..+-.. ..|.++....
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~ 105 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRL 105 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEE
Confidence 467899999999999999985 5799887543
No 138
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=80.57 E-value=13 Score=24.27 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred CcceEEEEeCCHHHHHHHHH-hcCCeEeecC
Q 031774 90 GFGHIGITVDDVYKACERFE-RLGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~-~~G~~~~~~~ 119 (153)
.+.|+++.|.|+++..+--. ..|.++....
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 46799999999999999995 5799886533
No 139
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=80.24 E-value=11 Score=23.28 Aligned_cols=52 Identities=33% Similarity=0.550 Sum_probs=34.2
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCC---CcccceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPD---GGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~---~~~~~~~~~~~DPdG~~iel~~ 142 (153)
|++|+++.|.|+++..+-..+ .|.++..... ........++...+. .+++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 56 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFL 56 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeee
Confidence 468999999999999998876 6988875443 112223444555543 455554
No 140
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=78.39 E-value=13 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=25.7
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~ 119 (153)
.+.|+.|.|+|+++..+-..+ .|.++....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 467999999999999999887 798887654
No 141
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.22 E-value=11 Score=22.36 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEeecCCC--ccc-ceEEEEECCCCCEEE
Q 031774 101 VYKACERFERLGVEFAKKPDG--GKL-KGVAFIKDPDDYWIE 139 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~~--~~~-~~~~~~~DPdG~~ie 139 (153)
+..+...|...|+.+...-.. |.. -..||++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 677888899999988854422 222 248999999998763
No 142
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.62 E-value=7.3 Score=22.10 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=22.2
Q ss_pred CcceEEEEeC--CHHHHHHHHHhcCCeEeec
Q 031774 90 GFGHIGITVD--DVYKACERFERLGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~--di~~~~~~l~~~G~~~~~~ 118 (153)
+...+.|+++ +.+.+.+.|+++|+++..+
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3445666664 8889999999999988754
No 143
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=74.92 E-value=17 Score=22.51 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~ 118 (153)
++.|+.+.|+|++++.+-....|.++...
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 56899999999999999988899877644
No 144
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=74.91 E-value=19 Score=23.09 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=33.8
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCC-cc-cceEEEEECCCCCEEEEeccC
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iel~~~~ 144 (153)
++.|+++.|+|+++..+-.++ .|.+....... .. .....++. -.+..+++.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~ 60 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IGGLWIAIMEGD 60 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cCCeEEEEecCC
Confidence 788999999999999999876 78876543311 11 11111222 235677777543
No 145
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=74.03 E-value=21 Score=23.14 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=31.8
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
++.|+++.|+|++++.+-..+ .|.++..... ..+++.- +|..+.+..
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~-----~~~~~~~-~g~~l~l~~ 51 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKGR-----KTAYFDL-NGLWIALNE 51 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeecC-----eeEEEec-CCeEEEeec
Confidence 678999999999999999864 7887764321 1234433 355666544
No 146
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=72.61 E-value=19 Score=22.04 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=32.1
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 92 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
.|+++.|+|+++..+-..+ .|.++....... ...+.+...++..+.++...
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 53 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGDGG--GDYAVFSTGGGAVGGLMKAP 53 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccCCC--CceEEEEeCCccEEEEecCC
Confidence 5999999999999999876 498876544211 12233443333445555543
No 147
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=72.45 E-value=20 Score=22.25 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=24.9
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
++.|+.+.|+|++++.+-..+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 678999999999999999987 79887654
No 148
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=72.18 E-value=7.9 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.1
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
++.|+.+.|+|++++.+-..+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 678999999999999999875 79987654
No 149
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=71.63 E-value=22 Score=22.34 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=31.6
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
++.|+++.|+|++++.+-.++ .|.+..... +. ..++...+|..+++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~~---~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF--GP---FAVVKLDNGVSLDFAQ 52 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc--CC---EEEEEcCCCcEEEEec
Confidence 567999999999999998864 588776532 11 2333333455666555
No 150
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=71.18 E-value=7.7 Score=26.17 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-cCCeEee
Q 031774 89 RGFGHIGITVDDVYKACERFER-LGVEFAK 117 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 117 (153)
.++.|+++.|+|+++..+-..+ .|.++..
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 3678999999999999998876 7987764
No 151
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=70.40 E-value=21 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.429 Sum_probs=23.1
Q ss_pred cceEEEEeCCHHHHHHHHH-hcCCeEeec
Q 031774 91 FGHIGITVDDVYKACERFE-RLGVEFAKK 118 (153)
Q Consensus 91 ~~hl~f~v~di~~~~~~l~-~~G~~~~~~ 118 (153)
+.|+++.|+|+++..+-.. ..|+++...
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~ 30 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDV 30 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEee
Confidence 5799999999999988885 579887643
No 152
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=70.04 E-value=24 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.7
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
++.|+.+.|+|++++.+-..+ .|.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 678999999999999999876 49877654
No 153
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=69.44 E-value=27 Score=22.31 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=32.0
Q ss_pred ceEEEEeCCHHHHHHHHHh-cCCeEeecCCCcccceEEEEECC-CCCEEEEecc
Q 031774 92 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFDL 143 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP-dG~~iel~~~ 143 (153)
.|+++.|+|++++.+-..+ .|+++.............|+... .+..+++...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC
Confidence 3999999999999998876 79887643221110123444433 3445666553
No 154
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=69.03 E-value=27 Score=23.67 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hcCCeEeec
Q 031774 89 RGFGHIGITVDDVYKACERFE-RLGVEFAKK 118 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~-~~G~~~~~~ 118 (153)
.++.|+.|.|+|++++.+-.. ..|.++...
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 367899999999999999987 589887543
No 155
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=68.19 E-value=12 Score=24.74 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-cCCeEee
Q 031774 89 RGFGHIGITVDDVYKACERFER-LGVEFAK 117 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 117 (153)
.++.|+++.|+|+++..+-.+. .|.++..
T Consensus 5 ~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~ 34 (143)
T cd07243 5 HRLDHCLLTGEDIAETTRFFTDVLDFYLAE 34 (143)
T ss_pred ceeCEEEEecCCHHHHHHHHHHhcCCEEEE
Confidence 4678999999999999988865 7987654
No 156
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=67.88 E-value=26 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.3
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
++.|+.|.++|++++.+-..+ .|.++...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 688999999999999988886 68876643
No 157
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=67.77 E-value=31 Score=22.68 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-cCCeEee
Q 031774 89 RGFGHIGITVDDVYKACERFER-LGVEFAK 117 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 117 (153)
.++.|+++.|.|++++.+-..+ .|.++..
T Consensus 16 ~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 16 RRLLHTMLRVGDLDKSLDFYTEVLGMKLLR 45 (150)
T ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCEEEE
Confidence 4889999999999999999975 7988754
No 158
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=67.70 E-value=30 Score=22.81 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEee
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAK 117 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~ 117 (153)
++.|+++.|+|++++.+-.++ .|.++..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEE
Confidence 678999999999999998854 7887753
No 159
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.70 E-value=27 Score=21.75 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=31.4
Q ss_pred ceEEEEeCCHHHHHHHHHh----cCCeEeecCCCcccceEEEEECC-CCCEEEEecc
Q 031774 92 GHIGITVDDVYKACERFER----LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFDL 143 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~----~G~~~~~~~~~~~~~~~~~~~DP-dG~~iel~~~ 143 (153)
.|+++.|+|++++.+-.++ .|.........+ .+++..+ .+..+.+...
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPG----AVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCc----eeEeccCCCCceEEEecc
Confidence 5999999999999888877 588776543111 1334444 3455666554
No 160
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.61 E-value=36 Score=23.30 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=40.6
Q ss_pred CCcceEEEEeCCHHHHHHHHHhcCCeEe--ecCC------------C---cc----cceEEEEECCCCCEEEEecc
Q 031774 89 RGFGHIGITVDDVYKACERFERLGVEFA--KKPD------------G---GK----LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~~G~~~~--~~~~------------~---~~----~~~~~~~~DPdG~~iel~~~ 143 (153)
.|...+++++++.++..+-..++|+++. ..+. . |. ..+..|+.|+||.+..++..
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecC
Confidence 3778999999999999888888887763 2221 0 11 12578899999999999943
No 161
>PRK06724 hypothetical protein; Provisional
Probab=67.38 E-value=25 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=20.6
Q ss_pred CcceEEEEeCCHHHHHHHHHh----cCCeEe
Q 031774 90 GFGHIGITVDDVYKACERFER----LGVEFA 116 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~----~G~~~~ 116 (153)
++.|+++.|+|+++..+-..+ .|.+..
T Consensus 7 ~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 788999999999987765554 466654
No 162
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=64.42 E-value=8.6 Score=29.25 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=21.2
Q ss_pred CcceEEEEe------CCHHHHHHHHHhcCCeEe
Q 031774 90 GFGHIGITV------DDVYKACERFERLGVEFA 116 (153)
Q Consensus 90 g~~hl~f~v------~di~~~~~~l~~~G~~~~ 116 (153)
.++|+.+.| .||+++.+.|+++|++..
T Consensus 184 ~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 184 HINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp S-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 789999999 999999999999998776
No 163
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=63.44 E-value=13 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=24.5
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
++.|+++.|+|+++..+-.+. .|.++...
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~ 31 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKD 31 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeee
Confidence 467999999999999999887 88887654
No 164
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=63.24 E-value=18 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.0
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
|+.|+++.|+|++++.+-..+ .|.++...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 467999999999999998875 78877643
No 165
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=61.90 E-value=38 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.3
Q ss_pred CcceEEEEeCCHHHHHHHHHh-cCCeEeec
Q 031774 90 GFGHIGITVDDVYKACERFER-LGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~-~G~~~~~~ 118 (153)
.+.|+++.|+|++++.+-..+ .|.++...
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 567999999999999999876 59887644
No 166
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.91 E-value=7.6 Score=28.12 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=24.7
Q ss_pred cChhhhHHHHhhhcCCEEeEEeecCCccEEEEEeecc
Q 031774 5 KDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 41 (153)
Q Consensus 5 ~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~ 41 (153)
.|+.+++.||.+.||+++..-. +.....+|...+
T Consensus 145 a~~~e~a~wy~dyLGleie~~h---gevikfiFTnId 178 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNID 178 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc---CceEEEEEeccC
Confidence 4678889999999999998643 223456666654
No 167
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.66 E-value=20 Score=21.48 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.9
Q ss_pred CcceEEEEeCC----HHHHHHHHHhcCCeEeec
Q 031774 90 GFGHIGITVDD----VYKACERFERLGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~d----i~~~~~~l~~~G~~~~~~ 118 (153)
+...+.++++| ++++.+.|+++|+++...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 44577789888 999999999999988643
No 168
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=59.04 E-value=11 Score=24.57 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred ceEEEEeCCHHHHHHHHHhcCCeEeec
Q 031774 92 GHIGITVDDVYKACERFERLGVEFAKK 118 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~~G~~~~~~ 118 (153)
..+-++++|++++.+.|+++|+++...
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 477799999999999999999988754
No 169
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=58.79 E-value=4.5 Score=21.44 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=14.2
Q ss_pred eeecChhhhHHHHhhhcC
Q 031774 2 FRIKDPKVSLDFYSRVLG 19 (153)
Q Consensus 2 l~v~d~~~a~~FY~~~lG 19 (153)
|.+++.++..+||++.|-
T Consensus 17 iP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 17 IPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccccchhHHHHHHHH
Confidence 345788999999988763
No 170
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.30 E-value=25 Score=19.69 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCeEe
Q 031774 93 HIGITVDDVYKACERFERLGVEFA 116 (153)
Q Consensus 93 hl~f~v~di~~~~~~l~~~G~~~~ 116 (153)
.+-+.++|.+++.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 555666888899999999998763
No 171
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=57.04 E-value=15 Score=16.40 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.5
Q ss_pred EEEECCCCCEEE
Q 031774 128 AFIKDPDDYWIE 139 (153)
Q Consensus 128 ~~~~DPdG~~ie 139 (153)
..+.|++|++|-
T Consensus 9 ~i~~D~~G~lWi 20 (24)
T PF07494_consen 9 SIYEDSDGNLWI 20 (24)
T ss_dssp EEEE-TTSCEEE
T ss_pred EEEEcCCcCEEE
Confidence 456899999884
No 172
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=55.88 E-value=48 Score=20.71 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.1
Q ss_pred ceEEEEeCCHHHHHHHHHhcCCeEee
Q 031774 92 GHIGITVDDVYKACERFERLGVEFAK 117 (153)
Q Consensus 92 ~hl~f~v~di~~~~~~l~~~G~~~~~ 117 (153)
.++.+.|+|+++..+-.+..|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 47889999999999999888987763
No 173
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=54.82 E-value=29 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 140 (153)
.|++.+.+-|++.|+++...-..|..++.++| |++-..+.+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f-~~~tG~v~v 152 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIF-DTSDGKVYI 152 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEE-ECCCCEEEE
Confidence 37999999999999999976656666666665 454334444
No 174
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=54.48 E-value=30 Score=23.92 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 138 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 138 (153)
.|++.+.+-|.+.|+++...-..|..++.++| |++-..+
T Consensus 115 rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f-~~~tG~v 153 (167)
T PRK13498 115 KNIHAALALAEQNGLHLKAQDLGSTGHRSIIF-DLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEE-ECCCCEE
Confidence 47899999999999999976666666666665 4443333
No 175
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=54.45 E-value=31 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 137 (153)
.|++.+.+-|++.|+++...-..|..++.++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 478999999999999999766556666666654444544
No 176
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=53.02 E-value=23 Score=22.64 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
.|++.+.+-|.+.|+++...-..|..++.++| ||+-..+.+-
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f-~~~tG~v~vk 105 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRF-DPATGEVWVK 105 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEE-ETTTTEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEE-EcCCCEEEEE
Confidence 47999999999999999976555666666665 5544444443
No 177
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=52.57 E-value=34 Score=24.10 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 138 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 138 (153)
.|++.+.+-|.+.|+++...-..|..++.++|.--+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 3789999999999999997666666666666544455543
No 178
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=51.62 E-value=36 Score=23.45 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 137 (153)
.|++.+.+-|.+.|+++...-..|..++.++|.--+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 378999999999999999766556666666653334433
No 179
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=51.54 E-value=61 Score=22.35 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=27.0
Q ss_pred CeeecChhhhHHHHhhhcCCEEeEEeecCCccE-EEEEeecc
Q 031774 1 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYE 41 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~~~~~ 41 (153)
+|.|+|++++..-+++ .|.++..... ++.. .++|+-.+
T Consensus 120 ci~V~di~sac~~lke-kGV~f~Kk~~--dGk~K~iaF~~dp 158 (170)
T KOG2944|consen 120 CIEVDDINSACERLKE-KGVRFKKKLK--DGKMKPIAFLHDP 158 (170)
T ss_pred EEEeCCHHHHHHHHHH-hCceeeecCC--CccccceeEEECC
Confidence 4789999999999965 9999666543 3333 45666543
No 180
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=50.11 E-value=36 Score=25.44 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCeEeecCCC-ccc-----ceEEEEECCCCCEEEEeccCc
Q 031774 101 VYKACERFERLGVEFAKKPDG-GKL-----KGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~~-~~~-----~~~~~~~DPdG~~iel~~~~~ 145 (153)
.++..+-+++.-+-+...|.+ +.. ..++|+.||+|..++...+..
T Consensus 212 ~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 212 TEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred HHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 344445555555555554533 211 238899999999999887654
No 181
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=49.60 E-value=37 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCC
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 136 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 136 (153)
.|++.+.+.|.+.|+++...-..|..++.++|.--+|.
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~ 176 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQ 176 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCE
Confidence 37899999999999999976655666666655333443
No 182
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.94 E-value=34 Score=19.35 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=20.9
Q ss_pred CcceEEEEeCC---HHHHHHHHHhcCCeEe
Q 031774 90 GFGHIGITVDD---VYKACERFERLGVEFA 116 (153)
Q Consensus 90 g~~hl~f~v~d---i~~~~~~l~~~G~~~~ 116 (153)
+..++.+++.+ ++++.+.|+++|+.+.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 44577788865 7889999999998653
No 183
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=48.93 E-value=50 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCC
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 136 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 136 (153)
.|.+.+.+.|++.|++++..-..+..++.++|.--+|-
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~ 151 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGR 151 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCc
Confidence 47899999999999999977666666676765333443
No 184
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=48.82 E-value=17 Score=23.19 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred EeCCHHHHHHHHHhcCCeEeecCCCccc--ce-EEEEECCCCCEEEEec
Q 031774 97 TVDDVYKACERFERLGVEFAKKPDGGKL--KG-VAFIKDPDDYWIEIFD 142 (153)
Q Consensus 97 ~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~-~~~~~DPdG~~iel~~ 142 (153)
.+.++...+++|.+.| .+...-..+.. +. .+...|++|.+++-..
T Consensus 22 Qik~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~ 69 (109)
T PF06923_consen 22 QIKNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEI 69 (109)
T ss_pred HHHHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEE
Confidence 4567889999999999 44432222322 22 5556899999988644
No 185
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=48.06 E-value=43 Score=22.89 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 140 (153)
.|++.+.+-|++.|+++...-..|..++.++| +++-..+.+
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f-~~~tG~v~v 147 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDVGGDYGRTVKF-DLKTGKVIV 147 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEE-ECCCCEEEE
Confidence 57999999999999999976655666666665 454333333
No 186
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=46.81 E-value=46 Score=23.77 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 138 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 138 (153)
.|++.+.+-|++.|+++...-..|..++.++|.--+|..+
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 3789999999999999997655566666566544445443
No 187
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=46.78 E-value=57 Score=18.85 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCC
Q 031774 101 VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDD 135 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG 135 (153)
+-.+.+.+.++|+.+. ..|..+..+...|+.|-+|
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 7788899999998776 4554433233455566665
No 188
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=45.61 E-value=37 Score=25.43 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=26.3
Q ss_pred eCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCC
Q 031774 98 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 134 (153)
Q Consensus 98 v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 134 (153)
+...+++++.+.++|+.+...+.......++|.+||-
T Consensus 37 ~aQh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~ 73 (267)
T COG1834 37 VAQHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPG 73 (267)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcccCCCcceEeccce
Confidence 3456788999999999998655322223468888883
No 189
>PHA02754 hypothetical protein; Provisional
Probab=43.99 E-value=51 Score=18.51 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 101 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
+.++.+.|.++|+-+..-..-...|.-+.+.-.||..||+.+..
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSETE 63 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEeee
Confidence 45566777788887664221111233244567889999997754
No 190
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=43.73 E-value=53 Score=23.50 Aligned_cols=41 Identities=2% Similarity=-0.080 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 140 (153)
.|++.+.+-|.+.|+++...-..|..++.++| +|+-..+.+
T Consensus 127 rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f-~~~tG~v~v 167 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAEDLLDIYPRKVYF-FPTTGKVLV 167 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEE-ECCCCEEEE
Confidence 47999999999999999976655666666665 444333333
No 191
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=43.55 E-value=93 Score=20.44 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=34.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeE--eecCCC------cc-------------cceEEEEECCCCCEEEEecc
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEF--AKKPDG------GK-------------LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~--~~~~~~------~~-------------~~~~~~~~DPdG~~iel~~~ 143 (153)
++.-+++.+++.+++.+.+++.|..+ +..+.. +. ..+..|+.||+|.++..+..
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 56778888888777777777776543 332210 00 00246899999999998763
No 192
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=29 Score=22.61 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=19.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCeEe
Q 031774 93 HIGITVDDVYKACERFERLGVEFA 116 (153)
Q Consensus 93 hl~f~v~di~~~~~~l~~~G~~~~ 116 (153)
|+-.+-+|+++++++|+++|..+.
T Consensus 104 hiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 104 HILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred eEEEehhhHHHHHHHHHHcCCccc
Confidence 555555689999999999998764
No 193
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=41.89 E-value=58 Score=23.86 Aligned_cols=41 Identities=5% Similarity=-0.110 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEE
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 140 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel 140 (153)
.|++.+.+.|.+.|+++...-..|..++.++| +|+-..+.+
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f-~~~TG~v~V 165 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQGVHPRKVAF-MPRTGRAMV 165 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEE-ECCCCEEEE
Confidence 37899999999999999976655666665655 444333333
No 194
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.71 E-value=82 Score=19.25 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=30.5
Q ss_pred cceEEEEeCC----HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCC
Q 031774 91 FGHIGITVDD----VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDY 136 (153)
Q Consensus 91 ~~hl~f~v~d----i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~ 136 (153)
-.-+.|.+++ +-.+.+.+..+|+.+. ..|.....+...|+.|-+|+
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3567788765 7788889999998776 45643332333555677665
No 195
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.94 E-value=18 Score=17.61 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=12.7
Q ss_pred ecChhhhHHHHhhhcCC
Q 031774 4 IKDPKVSLDFYSRVLGM 20 (153)
Q Consensus 4 v~d~~~a~~FY~~~lG~ 20 (153)
..|.++|+++|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 35789999999997743
No 196
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.76 E-value=75 Score=18.55 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=24.6
Q ss_pred CHHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCCE
Q 031774 100 DVYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 100 di~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~~ 137 (153)
.+..+.+.++++|+.+. ..|.....+...|+.|-+|+.
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ 53 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence 37788899999998776 455433323335556777654
No 197
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=39.85 E-value=48 Score=22.84 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.9
Q ss_pred EEeCCHHHHHHHHHhcCCeEee
Q 031774 96 ITVDDVYKACERFERLGVEFAK 117 (153)
Q Consensus 96 f~v~di~~~~~~l~~~G~~~~~ 117 (153)
|.+.|++++.++|++.|.....
T Consensus 8 ~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 8 AKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEcCCHHHHHHHHHhcCccccc
Confidence 6678999999999999866443
No 198
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.22 E-value=92 Score=20.02 Aligned_cols=45 Identities=7% Similarity=0.154 Sum_probs=29.7
Q ss_pred ceEEEEeCC----HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCC
Q 031774 92 GHIGITVDD----VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDY 136 (153)
Q Consensus 92 ~hl~f~v~d----i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~ 136 (153)
.-+.|.+++ +-.+.+.+..+|+.+. ..|.....+.+.||.|-+|+
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 578888775 7788889999999776 45543332233455666664
No 199
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=39.11 E-value=59 Score=17.94 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEeccC
Q 031774 100 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 100 di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
++++...+...+|-.+......+. +-..+|||..|-|.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~----~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGP----VAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S-----EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCce----EEEECCCCcEEEEEEcc
Confidence 455666667777866655432222 33579999999999653
No 200
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=37.37 E-value=32 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=24.3
Q ss_pred EEEeCCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEE
Q 031774 95 GITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIE 139 (153)
Q Consensus 95 ~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ie 139 (153)
+|.-.|.+.+++.+ .|+.+...+..|+. -.|.+.||||+-.-
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPV-LLFNVKQPSSYSCM 224 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccce-EEEEeeCCCccchh
Confidence 34445555555533 56666655543332 25668999998643
No 201
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=37.27 E-value=75 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=13.3
Q ss_pred eEEEEECCCCCEEEEec
Q 031774 126 GVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 126 ~~~~~~DPdG~~iel~~ 142 (153)
..+|+.||+|.+..+..
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 37899999999988764
No 202
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=36.38 E-value=18 Score=19.91 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=14.4
Q ss_pred eecChhhhHHHHhhhcCC
Q 031774 3 RIKDPKVSLDFYSRVLGM 20 (153)
Q Consensus 3 ~v~d~~~a~~FY~~~lG~ 20 (153)
..+.+...++||++.|-|
T Consensus 36 ~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 36 NVKCPLLVISFYEEHLTY 53 (54)
T ss_pred HhhCcHHHHHHHHHhccc
Confidence 356788899999998765
No 203
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.01 E-value=38 Score=18.89 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=16.9
Q ss_pred eEEEEe---CCHHHHHHHHHhcCCeE
Q 031774 93 HIGITV---DDVYKACERFERLGVEF 115 (153)
Q Consensus 93 hl~f~v---~di~~~~~~l~~~G~~~ 115 (153)
.+.+.+ ++.+++.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 344555 36789999999999853
No 204
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.90 E-value=1e+02 Score=18.61 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.1
Q ss_pred ceEEE--EeCCHHHHHHHHHhcCCeEee
Q 031774 92 GHIGI--TVDDVYKACERFERLGVEFAK 117 (153)
Q Consensus 92 ~hl~f--~v~di~~~~~~l~~~G~~~~~ 117 (153)
.|+.| .+++++++.+.+++.|+++..
T Consensus 51 y~V~Fl~~~~s~eev~~ele~mga~in~ 78 (88)
T COG4009 51 YYVVFLEEVESEEEVERELEDMGAEINR 78 (88)
T ss_pred EEEEEEeccCCHHHHHHHHHHhCchhcc
Confidence 46666 445799999999999987753
No 205
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=35.70 E-value=87 Score=17.82 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=17.6
Q ss_pred EEEEeCC----HHHHHHHHHhcCCeEe
Q 031774 94 IGITVDD----VYKACERFERLGVEFA 116 (153)
Q Consensus 94 l~f~v~d----i~~~~~~l~~~G~~~~ 116 (153)
+.|.++| +..+.+.+.++|+.+.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~ 28 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLT 28 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEE
Confidence 3455543 7889999999999876
No 206
>PF15121 TMEM71: TMEM71 protein family
Probab=35.19 E-value=41 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=15.9
Q ss_pred HHHhcCCeEeecCCCcccceEEEEECCCCCE
Q 031774 107 RFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 107 ~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 137 (153)
+|..+|+-+..+- -|+-|.|||+
T Consensus 63 RLLtNGYYi~TED--------SFl~D~dGNI 85 (149)
T PF15121_consen 63 RLLTNGYYIWTED--------SFLCDEDGNI 85 (149)
T ss_pred hhhcCccEEEecc--------ceeecCCCCE
Confidence 4667777666553 4678999986
No 207
>smart00300 ChSh Chromo Shadow Domain.
Probab=34.84 E-value=18 Score=20.38 Aligned_cols=19 Identities=26% Similarity=0.523 Sum_probs=15.0
Q ss_pred eecChhhhHHHHhhhcCCE
Q 031774 3 RIKDPKVSLDFYSRVLGMS 21 (153)
Q Consensus 3 ~v~d~~~a~~FY~~~lG~~ 21 (153)
..+.+...++||++.|-|+
T Consensus 42 ~~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 42 NVKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHHChHHHHHHHHHhCccC
Confidence 3567888999999988664
No 208
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=34.36 E-value=1.2e+02 Score=21.75 Aligned_cols=45 Identities=33% Similarity=0.443 Sum_probs=31.0
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeecCC--CcccceEEEEECCC
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPD 134 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPd 134 (153)
++.+|-+.-.|+.++...+...|+.+..... .+...+.+||.-.|
T Consensus 33 ~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 33 GLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 5667777777999999999999998875442 22223456665544
No 209
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=33 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=10.9
Q ss_pred cceEEEEECCCCCE
Q 031774 124 LKGVAFIKDPDDYW 137 (153)
Q Consensus 124 ~~~~~~~~DPdG~~ 137 (153)
++.+.|-.||.||-
T Consensus 143 ~gyqLy~SdPSGny 156 (249)
T KOG0178|consen 143 YGYQLYQSDPSGNY 156 (249)
T ss_pred cceEEEecCCCCCc
Confidence 35688889999974
No 210
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=34.18 E-value=77 Score=19.31 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=22.6
Q ss_pred CcceEEEEeCC---HHHHHHHHHhcCCeEeecC
Q 031774 90 GFGHIGITVDD---VYKACERFERLGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~d---i~~~~~~l~~~G~~~~~~~ 119 (153)
+...++|.+++ ++++.++|++.|+.+...-
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls 82 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYEDLS 82 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTT
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECC
Confidence 66789999985 6789999999999887543
No 211
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=33.42 E-value=1e+02 Score=23.33 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=34.1
Q ss_pred cceEEEEeCC----HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCCEEE
Q 031774 91 FGHIGITVDD----VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDYWIE 139 (153)
Q Consensus 91 ~~hl~f~v~d----i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~~ie 139 (153)
-..|.|.++| +-+++.-+..+|+... ..|..+.-+..+|+.|-+|+.=+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 4678888886 7778888889998665 56654333344566788887644
No 212
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=32.99 E-value=61 Score=24.55 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred ceEEEEeCC-HHHHHHHHHhcCCeEeecC-CCcccceEEEEECCCCCEEEEeccC
Q 031774 92 GHIGITVDD-VYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 92 ~hl~f~v~d-i~~~~~~l~~~G~~~~~~~-~~~~~~~~~~~~DPdG~~iel~~~~ 144 (153)
..|..+++| +..+.+-|++....+...| ..++..... +..++|+.+||....
T Consensus 159 ~aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~-fqn~~~y~VefLTtn 212 (349)
T COG5397 159 YAISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSA-FQNRDGYRVEFLTTN 212 (349)
T ss_pred hhhhHHhcccccHHHHHHhccCcccccCCccCCCcccee-eecCCCeEEEEeccC
Confidence 345556665 6677777777666666555 333333333 499999999999854
No 213
>PRK11899 prephenate dehydratase; Provisional
Probab=32.54 E-value=1e+02 Score=23.15 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=32.9
Q ss_pred cceEEEEeCC----HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCCE
Q 031774 91 FGHIGITVDD----VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 91 ~~hl~f~v~d----i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~~ 137 (153)
-..+.|.++| +-.+++.+..+|+... ..|..+..+...|+.|-+|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence 3578888876 7888899999998765 566544333345667887764
No 214
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=32.15 E-value=63 Score=21.03 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=30.1
Q ss_pred EEeCCHHHHHHHHHhcCCeEeecCCCccc--ce-EEEEECCCCCEEEEec
Q 031774 96 ITVDDVYKACERFERLGVEFAKKPDGGKL--KG-VAFIKDPDDYWIEIFD 142 (153)
Q Consensus 96 f~v~di~~~~~~l~~~G~~~~~~~~~~~~--~~-~~~~~DPdG~~iel~~ 142 (153)
|.+.++...+++|.+.|- +.-.-..+.. +. .++..|++|.+++-..
T Consensus 22 ~Qik~Fn~~~~~L~~~G~-V~iGr~~grf~~g~IvllaiD~~~~I~d~~~ 70 (118)
T PRK10234 22 WQISRFNRAFDTLCQQGR-VGVGRSSGRFKPRVVVALALDEQQRVVDTLF 70 (118)
T ss_pred HHHHHHHHHHHHHHhcCc-eEEecccCccCCCeEEEEEECCCCcEEeeEE
Confidence 345678899999999985 3322222222 22 5567899999988644
No 215
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=31.86 E-value=78 Score=16.89 Aligned_cols=15 Identities=20% Similarity=0.036 Sum_probs=11.6
Q ss_pred EEEEECCCCCEEEEe
Q 031774 127 VAFIKDPDDYWIEIF 141 (153)
Q Consensus 127 ~~~~~DPdG~~iel~ 141 (153)
...+.||||..+.|.
T Consensus 30 sY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEECCCCCEEEEE
Confidence 455689999988774
No 216
>PTZ00056 glutathione peroxidase; Provisional
Probab=31.58 E-value=1.9e+02 Score=20.38 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=18.7
Q ss_pred CCcceEEEEe--------CCHHHHHHHHHhcCCeE
Q 031774 89 RGFGHIGITV--------DDVYKACERFERLGVEF 115 (153)
Q Consensus 89 ~g~~hl~f~v--------~di~~~~~~l~~~G~~~ 115 (153)
.|+.-+++.+ ++.+++.+-+++.|+.+
T Consensus 71 ~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~f 105 (199)
T PTZ00056 71 LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKY 105 (199)
T ss_pred CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCc
Confidence 3677788876 45677777788887644
No 217
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=55 Score=25.08 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=19.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhc
Q 031774 88 PRGFGHIGITVDDVYKACERFERL 111 (153)
Q Consensus 88 ~~g~~hl~f~v~di~~~~~~l~~~ 111 (153)
...+.||||.|+|+++..+...-.
T Consensus 166 eitYP~icFavD~FdevF~dvvvr 189 (390)
T KOG2465|consen 166 EITYPEICFAVDDFDEVFDDVVVR 189 (390)
T ss_pred eeccceEEEEecCHHHhhhhhEEe
Confidence 357899999999999998876544
No 218
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=30.05 E-value=55 Score=20.96 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.7
Q ss_pred EEEEECCCCCEEEEeccCcccccCC
Q 031774 127 VAFIKDPDDYWIEIFDLKTIGKIGG 151 (153)
Q Consensus 127 ~~~~~DPdG~~iel~~~~~~~~~~~ 151 (153)
.+|+++-||..+.+.|+...++++.
T Consensus 48 ~Vyl~ne~G~~~~i~QPi~iN~gg~ 72 (114)
T PF09008_consen 48 PVYLENEDGSHVQIAQPIIINKGGF 72 (114)
T ss_dssp -EEEE-TTS-EEEE-SSEEE-TTS-
T ss_pred eEEEEcCCCCEeeccCCEEEccCCc
Confidence 6899999999999999887776654
No 219
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=30.01 E-value=1.7e+02 Score=19.57 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=31.1
Q ss_pred CcceEEEEeC-CHHHHHHHHHhcCCeEeecCCC-----------cccc-eEEEEECCCCCEEEE
Q 031774 90 GFGHIGITVD-DVYKACERFERLGVEFAKKPDG-----------GKLK-GVAFIKDPDDYWIEI 140 (153)
Q Consensus 90 g~~hl~f~v~-di~~~~~~l~~~G~~~~~~~~~-----------~~~~-~~~~~~DPdG~~iel 140 (153)
++.-+++.++ +.++..+-+++.|+.....|.. +..+ -..++.||+|+++.-
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 5677777777 4555667777888654322211 0001 167889999998854
No 220
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=29.49 E-value=80 Score=19.30 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=20.2
Q ss_pred hHHHHhhhcCCEEeEEeecCCccEEEE
Q 031774 10 SLDFYSRVLGMSLLKRLDFPEMKFSLY 36 (153)
Q Consensus 10 a~~FY~~~lG~~~~~~~~~~~~~~~~~ 36 (153)
+-+|+++-||+.+.....+.+.+..++
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~ 75 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMI 75 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEE
Confidence 558999999999998876666544333
No 221
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=29.44 E-value=86 Score=19.45 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcceEEEEeCCHHHHHHHHHh
Q 031774 81 YHNGNSEPRGFGHIGITVDDVYKACERFER 110 (153)
Q Consensus 81 ~~~~~~~~~g~~hl~f~v~di~~~~~~l~~ 110 (153)
+..|..++.|-..+.|.+++-+++++.+.+
T Consensus 64 fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~ 93 (100)
T PF02174_consen 64 FEAGRRCPTGEGLFWFQTPDAEEIFETVER 93 (100)
T ss_dssp EEESTTSTTCSEEEEEEESTHHHHHHHHHH
T ss_pred EEECCcCCCCCcEEEEEeCCHHHHHHHHHH
Confidence 345556667888999999997777766654
No 222
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.20 E-value=1.2e+02 Score=17.31 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=29.4
Q ss_pred EEEEeCC----HHHHHHHHHhcCCeEeec---CCCcccceEEEEECCCCCE
Q 031774 94 IGITVDD----VYKACERFERLGVEFAKK---PDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 94 l~f~v~d----i~~~~~~l~~~G~~~~~~---~~~~~~~~~~~~~DPdG~~ 137 (153)
+.+.++| +.++...+.++|+.+... +..+..-..+++.|++|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 4455555 778888999999999742 1222222467788999874
No 223
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.12 E-value=1e+02 Score=16.69 Aligned_cols=25 Identities=4% Similarity=0.131 Sum_probs=17.7
Q ss_pred ceEEEEeCC---HHHHHHHHHhcCCeEe
Q 031774 92 GHIGITVDD---VYKACERFERLGVEFA 116 (153)
Q Consensus 92 ~hl~f~v~d---i~~~~~~l~~~G~~~~ 116 (153)
.++.+.+.+ ++.+.++|++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 344555554 5689999999998764
No 224
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=29.00 E-value=1.1e+02 Score=25.08 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCeEeec-CCCcccceEEEEECCCCCEEE
Q 031774 103 KACERFERLGVEFAKK-PDGGKLKGVAFIKDPDDYWIE 139 (153)
Q Consensus 103 ~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~DPdG~~ie 139 (153)
++...|.++|+++.-- -.+..+|...-.+|+||+.+|
T Consensus 14 ~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 14 AAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred HHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeee
Confidence 3456688999887642 222233445557899999987
No 225
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=28.42 E-value=81 Score=17.47 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=12.5
Q ss_pred EEEEECCCCCEEEEeccC
Q 031774 127 VAFIKDPDDYWIEIFDLK 144 (153)
Q Consensus 127 ~~~~~DPdG~~iel~~~~ 144 (153)
.+.|.|++|+.+.+--+.
T Consensus 11 ~F~FYDen~~lVrv~vrD 28 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKVRD 28 (54)
T ss_dssp EEEEE-TTS-EEEEEGGG
T ss_pred eeEEECCCCCEEEEEhhh
Confidence 467789999999987654
No 226
>PF14044 NETI: NETI protein
Probab=27.68 E-value=1.2e+02 Score=16.97 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.9
Q ss_pred CHHHHHHHHHhcCCeEeecC
Q 031774 100 DVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 100 di~~~~~~l~~~G~~~~~~~ 119 (153)
.|++-++++++.|+.+....
T Consensus 9 TI~~CL~RM~~eGY~PvrR~ 28 (57)
T PF14044_consen 9 TISDCLARMKKEGYMPVRRI 28 (57)
T ss_pred cHHHHHHHHHHcCCCceeec
Confidence 48999999999999887544
No 227
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=27.32 E-value=2.4e+02 Score=22.69 Aligned_cols=48 Identities=27% Similarity=0.189 Sum_probs=28.3
Q ss_pred CcceEEEEeCC--HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDD--VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~d--i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 142 (153)
|...|.|.+.+ -..+++.++++|+.........++ =.||....|.|.-
T Consensus 345 GGYFIsld~~~G~AkrvV~lakeAGV~LT~AGAtfPy-----g~DP~D~nIRiAP 394 (425)
T PF12897_consen 345 GGYFISLDVLDGTAKRVVELAKEAGVALTPAGATFPY-----GKDPRDSNIRIAP 394 (425)
T ss_dssp BSS-EEEEESTT-HHHHHHHHHHTTEE---TTTTSGG-----G--TTS-EEEE--
T ss_pred CceEEEEecCCChHHHHHHHHHHhCceeCCCCCCCCC-----CCCCCCCcEEecC
Confidence 44578898875 677889999999877654433343 3799888887753
No 228
>PF15590 Imm15: Immunity protein 15
Probab=27.11 E-value=64 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.3
Q ss_pred EEEECC-CCCEEEEeccCcccccC
Q 031774 128 AFIKDP-DDYWIEIFDLKTIGKIG 150 (153)
Q Consensus 128 ~~~~DP-dG~~iel~~~~~~~~~~ 150 (153)
.+|.|| ||..||.+-+.+..-++
T Consensus 27 ~~y~DP~D~r~W~~~~~~s~~hGG 50 (69)
T PF15590_consen 27 TLYQDPRDGRYWEKSYPESHMHGG 50 (69)
T ss_pred hhccCCCCCceeEEecCcccccCC
Confidence 567899 68888888776644444
No 229
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=26.88 E-value=79 Score=24.32 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=18.3
Q ss_pred eCCHHHHHHHHHhcCCeEeecC
Q 031774 98 VDDVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 98 v~di~~~~~~l~~~G~~~~~~~ 119 (153)
+.|+++++++|+++|+.+.-..
T Consensus 60 i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEE
Confidence 4799999999999998776433
No 230
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.46 E-value=1.8e+02 Score=18.48 Aligned_cols=54 Identities=30% Similarity=0.547 Sum_probs=33.6
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeE--eecCCC------c-c---------cceEEEEECCCCCEEEEecc
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEF--AKKPDG------G-K---------LKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~--~~~~~~------~-~---------~~~~~~~~DPdG~~iel~~~ 143 (153)
++.-+++.+++.+++.+.+++.++.+ +..+.. + . .....|+.|++|.++..+..
T Consensus 57 ~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g 128 (140)
T cd03017 57 GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRK 128 (140)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEec
Confidence 56678888887777776666666543 222210 0 0 00356889999988887754
No 231
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.09 E-value=54 Score=15.26 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.8
Q ss_pred cChhhhHHHHhhh
Q 031774 5 KDPKVSLDFYSRV 17 (153)
Q Consensus 5 ~d~~~a~~FY~~~ 17 (153)
+|.+++..||++.
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 6889999999764
No 232
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=25.55 E-value=1.7e+02 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCeEee
Q 031774 93 HIGITVDDVYKACERFERLGVEFAK 117 (153)
Q Consensus 93 hl~f~v~di~~~~~~l~~~G~~~~~ 117 (153)
=+.+..++-+++.+.|...|+.+..
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite 70 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITE 70 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEE
Confidence 3455556889999999999998775
No 233
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=25.49 E-value=2e+02 Score=21.22 Aligned_cols=42 Identities=12% Similarity=-0.061 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 102 YKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 102 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
+.+.+.|++.|+.+..-.........+++.|++|....+...
T Consensus 64 ~~i~~~l~~~gI~~~~i~~~~~t~~~~~~~~~~g~~~~~~~~ 105 (303)
T TIGR03168 64 EFIEALLAEEGIKNDFVEVKGETRINVKIKESSGEETELNEP 105 (303)
T ss_pred HHHHHHHHHcCCCceEEECCCCCEEeEEEEeCCCCEEEEeCc
Confidence 557778999998766433322222345667899988776543
No 234
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=25.41 E-value=1.6e+02 Score=20.88 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=18.5
Q ss_pred CcceEEEEeCCH---HHHHHHHHhcCCeEeec
Q 031774 90 GFGHIGITVDDV---YKACERFERLGVEFAKK 118 (153)
Q Consensus 90 g~~hl~f~v~di---~~~~~~l~~~G~~~~~~ 118 (153)
-..|+|++|.+. +++.+.+.+.|-.+...
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen 65 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSEN 65 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhc
Confidence 357999999974 45667777888444443
No 235
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=25.30 E-value=41 Score=18.79 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.1
Q ss_pred cChhhhHHHHhhhcCCE
Q 031774 5 KDPKVSLDFYSRVLGMS 21 (153)
Q Consensus 5 ~d~~~a~~FY~~~lG~~ 21 (153)
+-+...++||++.|-|+
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 44677899999988664
No 236
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.04 E-value=1.6e+02 Score=17.39 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCeEeecCC----Cccc-ceEEEEECCCCCEE
Q 031774 101 VYKACERFERLGVEFAKKPD----GGKL-KGVAFIKDPDDYWI 138 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~----~~~~-~~~~~~~DPdG~~i 138 (153)
+..+.+.+...|+.+...-. .|.. -..||+ |.+|..+
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl 55 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI 55 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc
Confidence 67788889999998885332 2222 247787 8888763
No 237
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=24.62 E-value=43 Score=18.15 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=11.5
Q ss_pred cChhhhHHHHhhhcC
Q 031774 5 KDPKVSLDFYSRVLG 19 (153)
Q Consensus 5 ~d~~~a~~FY~~~lG 19 (153)
+++++..+||++.|-
T Consensus 23 s~v~~~~dWYk~Mfk 37 (50)
T smart00459 23 SSVERPKDWYRTMFK 37 (50)
T ss_pred cCcccHHHHHHHHHH
Confidence 367888889988764
No 238
>PRK13577 diaminopimelate epimerase; Provisional
Probab=24.51 E-value=1.9e+02 Score=21.52 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhcCCeEeecC-CC-cccceEEEEECCCCCEEEEeccCc
Q 031774 89 RGFGHIGITVDDVYKACERFERLGVEFAKKP-DG-GKLKGVAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~~~G~~~~~~~-~~-~~~~~~~~~~DPdG~~iel~~~~~ 145 (153)
.|..|+.+.++|+++. .+.+.|-.+...+ .+ +..-.++++.|++...+.++++..
T Consensus 156 ~G~PH~Vv~V~~~~~~--~~~~~g~~~~~~~~fp~~~Nv~f~~~~~~~~i~~R~~ErG~ 212 (281)
T PRK13577 156 IGNPHCVVLLDEISEE--LARELGPLIETHPRFPNRTNVQFLKVLDRNTIQIEIWERGA 212 (281)
T ss_pred CCCCcEEEEeCCcchh--hHHhhCccccccCCCCCCceEEEEEEccCCeEEEEEECCCC
Confidence 4778999999987654 2344444443222 11 111235566788888888888774
No 239
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=24.45 E-value=1.1e+02 Score=20.87 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=27.8
Q ss_pred CcEEEEEeccCCCCCCCCCCCCCCCCCCCCcceEEEEe-------CCHHHHHHHHHhcCCeEe
Q 031774 61 PATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITV-------DDVYKACERFERLGVEFA 116 (153)
Q Consensus 61 ~~~lel~~~~~~~~~~~~~~~~~~~~~~~g~~hl~f~v-------~di~~~~~~l~~~G~~~~ 116 (153)
+..+|++....|... . .|+-|+.++- +++.+...+|++.|++..
T Consensus 82 ~~~~EiF~Q~~Pv~~----------Q--nayrHm~iE~rLL~~~g~~~r~~Ii~LK~~GlKTE 132 (152)
T PF14091_consen 82 GFPFEIFGQPIPVEE----------Q--NAYRHMLIEHRLLELHGPSFREEIIELKESGLKTE 132 (152)
T ss_pred CceEEEeecCCChhh----------H--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCcch
Confidence 578999754333211 1 2666765543 467888889999997653
No 240
>PRK03467 hypothetical protein; Provisional
Probab=24.18 E-value=2.3e+02 Score=19.09 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhcCCeEeecC-CCccc-ceEEEEECCCCCEEEEeccCcc
Q 031774 99 DDVYKACERFERLGVEFAKKP-DGGKL-KGVAFIKDPDDYWIEIFDLKTI 146 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~-~~~~~-~~~~~~~DPdG~~iel~~~~~~ 146 (153)
++++.+.+-|+++-+--+... ..+.+ ...+|+.|+++..+-|......
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~T 54 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEKT 54 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCCC
Confidence 356777777887776444322 23443 3578888999999999876543
No 241
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=24.08 E-value=1.1e+02 Score=23.53 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhcCCeEeecCCCcccceEEEEECCC
Q 031774 99 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 134 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 134 (153)
+.+|.+++.+.++|..-..-...|..+-.++|-||.
T Consensus 266 ~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~ 301 (333)
T COG2605 266 DAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPS 301 (333)
T ss_pred HHHHHHHHHHHhcCchhceeeccCCccEEEEEeCcc
Confidence 469999999999986433322223333356677884
No 242
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.55 E-value=2e+02 Score=19.76 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=24.3
Q ss_pred CcceEEEEeC--CHHHHHHHHHhcCCeEee
Q 031774 90 GFGHIGITVD--DVYKACERFERLGVEFAK 117 (153)
Q Consensus 90 g~~hl~f~v~--di~~~~~~l~~~G~~~~~ 117 (153)
.+.++++... |+..++++|++.|..+..
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETIV 134 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEEE
Confidence 5678999886 699999999999998874
No 243
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=23.51 E-value=1.9e+02 Score=17.73 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=19.1
Q ss_pred ceEEEEeCC---HHHHHHHHHhcCCeEeecCCCcccceEEEEECCC
Q 031774 92 GHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 134 (153)
Q Consensus 92 ~hl~f~v~d---i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 134 (153)
.|+-|.+++ .+.+.+-|.+.|++....-..+ ...+|++|.+
T Consensus 22 YhLEi~~~~~e~a~~l~~lL~~~~i~~k~~~r~~--~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFNDEEFAEQLKELLNKFGINAKIIKRKN--KYVVYLKDSE 65 (93)
T ss_dssp --EEEEES-HHHHHHHHHHHHHH----EEEEESS--EEEEEE--HH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCceeeeecC--ceEEEEcCHH
Confidence 699999987 3445556667777665433222 2368888764
No 244
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=23.12 E-value=72 Score=20.33 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.8
Q ss_pred EEEEECCCCCEEE
Q 031774 127 VAFIKDPDDYWIE 139 (153)
Q Consensus 127 ~~~~~DPdG~~ie 139 (153)
.+.++||||++|-
T Consensus 20 RARlyd~dG~Ll~ 32 (112)
T PF13756_consen 20 RARLYDPDGNLLA 32 (112)
T ss_pred eEEEECCCCCEEe
Confidence 3778999999885
No 245
>PRK03381 PII uridylyl-transferase; Provisional
Probab=22.85 E-value=2.1e+02 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=35.8
Q ss_pred CcceEEEEeCC----HHHHHHHHHhcCCeEeecCC--Cc-ccceEEEEECCCCCEEE
Q 031774 90 GFGHIGITVDD----VYKACERFERLGVEFAKKPD--GG-KLKGVAFIKDPDDYWIE 139 (153)
Q Consensus 90 g~~hl~f~v~d----i~~~~~~l~~~G~~~~~~~~--~~-~~~~~~~~~DPdG~~ie 139 (153)
+...+.+.+.| +..+...|...|+.+..--. .+ ..-..||+.|++|..++
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 45677778877 67788889999999985331 12 22248899999998664
No 246
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=22.81 E-value=58 Score=19.74 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=12.3
Q ss_pred EEEEECCCCCEEEEecc
Q 031774 127 VAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 127 ~~~~~DPdG~~iel~~~ 143 (153)
.+.+.||+|+.+.-...
T Consensus 39 ~v~i~dp~g~~v~~~~~ 55 (99)
T PF01835_consen 39 TVTIKDPSGNEVFRWSV 55 (99)
T ss_dssp EEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEe
Confidence 46788888888865554
No 247
>PHA00159 endonuclease I
Probab=22.67 E-value=1.7e+02 Score=19.69 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCeEeecCCCccc----ceEEE---EECCCCCEEEEec
Q 031774 101 VYKACERFERLGVEFAKKPDGGKL----KGVAF---IKDPDDYWIEIFD 142 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~~~~~----~~~~~---~~DPdG~~iel~~ 142 (153)
-+...++|.+.|+...-+...-.. ....| |.=|+|.++|+=.
T Consensus 20 E~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvKG 68 (148)
T PHA00159 20 EDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETKG 68 (148)
T ss_pred HHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEecc
Confidence 355667799999877644321111 11223 3468999998743
No 248
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=22.66 E-value=2.8e+02 Score=19.42 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=31.7
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeecCCCccc-ceEEEEECCCCCEEEEec
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 142 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iel~~ 142 (153)
+..+..++.++++..++.+....-....++ +.. ...++..+-||..+.++.
T Consensus 34 ~~~~~~~~~~~fed~L~~~~~~~~~~~~~~--g~V~~~~y~~v~~d~~ivG~i~ 85 (174)
T COG3981 34 AAWKADYEQEDFEDWLEDLTRQEPGNNLPE--GWVPASTYWAVDEDGQIVGFIN 85 (174)
T ss_pred ceeecccccccHHHHHHHHhccCCCcCCCC--CceeceeEEEEecCCcEEEEEE
Confidence 455666777899999999776654333333 221 122333444999998886
No 249
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.42 E-value=1.7e+02 Score=16.90 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCeEeecC-C---CcccceEEEEECCCCC
Q 031774 101 VYKACERFERLGVEFAKKP-D---GGKLKGVAFIKDPDDY 136 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~-~---~~~~~~~~~~~DPdG~ 136 (153)
+..+...|.+.|+.+...- . .+..-..+|+.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 6778888999999998632 1 1222347889999877
No 250
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=22.02 E-value=32 Score=20.23 Aligned_cols=15 Identities=13% Similarity=0.507 Sum_probs=12.7
Q ss_pred eeecChhhhHHHHhh
Q 031774 2 FRIKDPKVSLDFYSR 16 (153)
Q Consensus 2 l~v~d~~~a~~FY~~ 16 (153)
|++.|++.++.||+.
T Consensus 4 i~I~dIE~AIN~WR~ 18 (71)
T PF12512_consen 4 ISITDIEAAINYWRA 18 (71)
T ss_pred cCHHHHHHHHHHHHh
Confidence 567899999999976
No 251
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=21.64 E-value=46 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.8
Q ss_pred CCcceEEEEeCCHHHHHHHHH
Q 031774 89 RGFGHIGITVDDVYKACERFE 109 (153)
Q Consensus 89 ~g~~hl~f~v~di~~~~~~l~ 109 (153)
..+.+|+|.+||++++.+.+.
T Consensus 131 ~~YP~i~F~vD~Fde~F~~~~ 151 (237)
T PF09741_consen 131 ITYPNICFTVDDFDEVFDDVV 151 (237)
T ss_pred cccCeEEEEecChhhhhheEE
Confidence 478899999999999877653
No 252
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=21.30 E-value=1.8e+02 Score=16.79 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEe
Q 031774 101 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 141 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~ 141 (153)
..+..+.|++.|......- |. ...++-|||.++-|-
T Consensus 9 ~ke~ik~Le~~Gf~~vrqk--GS---H~q~kHp~~~~vtVP 44 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQK--GS---HRQYKHPDGGRVTVP 44 (66)
T ss_pred HHHHHHHHHhCCcEEEEee--cc---eeEEEcCCCCEEEec
Confidence 4677788899998777654 33 356789998887664
No 253
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=21.27 E-value=2e+02 Score=21.68 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=32.8
Q ss_pred CcceEEEEeCCHHHHHHHHHhcCCeEeecCCCcccce--EEEEECCCCCEEEEeccCc
Q 031774 90 GFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKG--VAFIKDPDDYWIEIFDLKT 145 (153)
Q Consensus 90 g~~hl~f~v~di~~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~DPdG~~iel~~~~~ 145 (153)
|..|+.+.|+|++. ..+...|-.+...+.=-.... +.-+.+++-..+.++|++.
T Consensus 154 GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG~ 209 (272)
T COG0253 154 GNPHLVIFVDDVET--ANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGA 209 (272)
T ss_pred CCCeEEEEeCCccc--chhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecCC
Confidence 66799999998777 444444433333221001122 3445678889999998873
No 254
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=21.11 E-value=1.5e+02 Score=21.54 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhcCCeEeecCCC-------cccceEEE-EECCCCCEEEEeccC
Q 031774 99 DDVYKACERFERLGVEFAKKPDG-------GKLKGVAF-IKDPDDYWIEIFDLK 144 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~~~~~~-------~~~~~~~~-~~DPdG~~iel~~~~ 144 (153)
++.+.+.+.|+++|+....-... ....+..| +.|+.|++|.|-.+.
T Consensus 25 ~~~~~l~~~l~~~g~~~~~~~~~G~~~~y~~~~~RimFPI~d~~G~vvgFgGR~ 78 (218)
T TIGR00646 25 SKYRCAMNYLKKRGFNLQDFLKVGGGLAYLGEKEWLNLPLYNFDGNLIGFLNRK 78 (218)
T ss_pred hhHHHHHHHHHHcCCCHHHHHHcCCCEEecccCCEEEEEEECCCCCEEEEeccC
Confidence 35778888888888765432221 22234444 899999999997654
No 255
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.04 E-value=1.9e+02 Score=16.91 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=26.9
Q ss_pred CcceEEEEeC-CHHHHHHHHHhcCCeEeecCCC-----------cc-cceEEEEECCCCCE
Q 031774 90 GFGHIGITVD-DVYKACERFERLGVEFAKKPDG-----------GK-LKGVAFIKDPDDYW 137 (153)
Q Consensus 90 g~~hl~f~v~-di~~~~~~l~~~G~~~~~~~~~-----------~~-~~~~~~~~DPdG~~ 137 (153)
++.-+++.++ +.++..+.+++.+.....-+.. +- .--.+++.||+|.+
T Consensus 35 ~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 35 DVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred CEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 5667777776 4677777777774433321110 00 01157889999974
No 256
>PRK14707 hypothetical protein; Provisional
Probab=20.85 E-value=1.9e+02 Score=28.65 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCeEeecCC----C-ccc-ceEEEEECCCCCEEEEecc
Q 031774 101 VYKACERFERLGVEFAKKPD----G-GKL-KGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 101 i~~~~~~l~~~G~~~~~~~~----~-~~~-~~~~~~~DPdG~~iel~~~ 143 (153)
+..+...|.++|+.....-+ . ..+ +.-+.++||+|..|||.-.
T Consensus 2358 ~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFH 2406 (2710)
T PRK14707 2358 LRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFH 2406 (2710)
T ss_pred HHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEec
Confidence 56777888999998774331 1 122 3345679999999999653
No 257
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.70 E-value=1.9e+02 Score=17.14 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=23.3
Q ss_pred CcceEEEEeC--CHHHHHHHHHhcCCeEeecC
Q 031774 90 GFGHIGITVD--DVYKACERFERLGVEFAKKP 119 (153)
Q Consensus 90 g~~hl~f~v~--di~~~~~~l~~~G~~~~~~~ 119 (153)
|...+++.++ +++++.++|++.|+.+..--
T Consensus 41 a~vlvGi~~~~~~~~~l~~~l~~~g~~~~dls 72 (81)
T cd04907 41 GRVLVGIQVPDADLDELKERLDALGYPYQEET 72 (81)
T ss_pred eeEEEEEEeChHHHHHHHHHHHHcCCCeEECC
Confidence 4567788876 57899999999999876543
No 258
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=20.53 E-value=1.1e+02 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.398 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHhcCCeEe
Q 031774 99 DDVYKACERFERLGVEFA 116 (153)
Q Consensus 99 ~di~~~~~~l~~~G~~~~ 116 (153)
.|++.+.+++.+.|+..+
T Consensus 17 ~nl~~l~~ri~~~~~~tV 34 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTV 34 (294)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 379999999999987543
No 259
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=20.47 E-value=2.9e+02 Score=20.24 Aligned_cols=42 Identities=12% Similarity=-0.035 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCeEeecCCCcccceEEEEECCCCCEEEEecc
Q 031774 102 YKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 143 (153)
Q Consensus 102 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 143 (153)
+.+.+.|++.|+....-...+..+..+++.|++|....+...
T Consensus 64 ~~~~~~L~~~gId~~~~~~~~~t~~~~~~~~~~g~~~~~~~~ 105 (304)
T TIGR03828 64 DFIEALLREEGIKTDFVRVPGETRINVKIKEPSGTETKLNGP 105 (304)
T ss_pred HHHHHHHHHCCCcceEEECCCCCeeeEEEEeCCCCEEEEECC
Confidence 567788999999865332222222345567888877766543
No 260
>COG3795 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41 E-value=62 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.3
Q ss_pred CeeecChhhhHHHHhh
Q 031774 1 MFRIKDPKVSLDFYSR 16 (153)
Q Consensus 1 ~l~v~d~~~a~~FY~~ 16 (153)
+|-|+|++++++|=.+
T Consensus 83 vie~~dLdeA~e~A~~ 98 (123)
T COG3795 83 VIEVRDLDEALEWAAR 98 (123)
T ss_pred EEEeCCHHHHHHHHhc
Confidence 4778999999999864
No 261
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=20.37 E-value=46 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=10.6
Q ss_pred cChhhhHHHHhhh
Q 031774 5 KDPKVSLDFYSRV 17 (153)
Q Consensus 5 ~d~~~a~~FY~~~ 17 (153)
+|.+++..||++.
T Consensus 22 ~d~~~A~~~~~~A 34 (39)
T PF08238_consen 22 KDYEKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHH
Confidence 5789999999764
No 262
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.20 E-value=2.3e+02 Score=22.46 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=32.3
Q ss_pred cceEEEEeCC----HHHHHHHHHhcCCeEe---ecCCCcccceEEEEECCCCCE
Q 031774 91 FGHIGITVDD----VYKACERFERLGVEFA---KKPDGGKLKGVAFIKDPDDYW 137 (153)
Q Consensus 91 ~~hl~f~v~d----i~~~~~~l~~~G~~~~---~~~~~~~~~~~~~~~DPdG~~ 137 (153)
-..+.|.++| +-.+++.+..+|+... ..|..+..+...||.|-+|+.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL 350 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC
Confidence 3467788875 7788889999998765 566544433446667887753
Done!