BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031775
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
           At1g70830, A Member Of The Major Latex Protein Family
          Length = 166

 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 93/151 (61%), Gaps = 4/151 (2%)

Query: 2   ALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS 61
           +LVGK+E  +EI+  A+KF+H++  + +HV  ASP NI+  D+HEG+W   GS+  W Y 
Sbjct: 14  SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73

Query: 62  VEGRTETFKEKVE--HDDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCS 119
            +G  +  KE++E    D N+ +T   +EGD+ K +KS+L   +V+PK  G  GSI    
Sbjct: 74  HDGEAKVAKERIEAVEPDKNL-ITFRVIEGDLMKEYKSFLLTIQVTPK-PGGPGSIVHWH 131

Query: 120 IAYEKLNANVPDPVAYVDFMVSITKDVADHI 150
           + YEK++  V  P   + F V ++K++ +H+
Sbjct: 132 LEYEKISEEVAHPETLLQFCVEVSKEIDEHL 162


>pdb|3F1B|A Chain A, The Crystal Structure Of A Tetr-Like Transcriptional
           Regulator From Rhodococcus Sp. Rha1
          Length = 203

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 79  NMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCS-----IAYEKLNANVPDPV 133
            +   L G  G V KH KSW  +Y+ +       GS+ +       +    L ++  DP 
Sbjct: 90  QLRRALEGFLGFVGKHRKSWXVLYRQAXGQQAFVGSVQSSRDRLIELTAHLLESSTKDPE 149

Query: 134 AYVDF------MVSITKDVADHITKG 153
              DF      +V   + VAD +  G
Sbjct: 150 PGQDFELIAIALVGAGEAVADRVAGG 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,165,871
Number of Sequences: 62578
Number of extensions: 218087
Number of successful extensions: 604
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)