Query 031775
Match_columns 153
No_of_seqs 116 out of 725
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 5.4E-49 1.2E-53 294.6 18.6 150 1-153 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 3.3E-38 7.2E-43 234.8 20.2 145 5-153 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 3.3E-16 7.2E-21 111.9 16.9 134 6-150 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 2E-12 4.3E-17 92.3 19.4 105 6-124 3-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 4E-13 8.8E-18 97.5 15.2 130 7-149 1-141 (144)
6 cd07819 SRPBCC_2 Ligand-bindin 99.5 3.1E-12 6.6E-17 91.7 17.7 114 5-127 2-115 (140)
7 cd08865 SRPBCC_10 Ligand-bindi 99.5 5.8E-12 1.3E-16 89.6 15.5 107 7-124 1-108 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.4 6.5E-12 1.4E-16 91.0 12.8 128 8-149 2-134 (138)
9 cd08861 OtcD1_ARO-CYC_like N-t 99.4 2.4E-11 5.2E-16 87.9 15.2 113 7-127 1-113 (142)
10 cd07812 SRPBCC START/RHO_alpha 99.3 1.8E-10 3.9E-15 79.8 14.6 112 8-128 2-114 (141)
11 cd08860 TcmN_ARO-CYC_like N-te 99.3 8.7E-10 1.9E-14 81.9 16.4 116 5-128 1-116 (146)
12 cd08862 SRPBCC_Smu440-like Lig 99.2 1.8E-09 3.9E-14 77.2 15.9 105 6-124 2-107 (138)
13 cd07824 SRPBCC_6 Ligand-bindin 99.2 1.9E-09 4.1E-14 79.1 16.3 110 6-126 2-113 (146)
14 PRK10724 hypothetical protein; 99.2 1.1E-09 2.5E-14 82.5 14.7 129 6-148 16-149 (158)
15 cd07820 SRPBCC_3 Ligand-bindin 99.2 7.7E-10 1.7E-14 80.3 13.3 109 7-125 1-112 (137)
16 cd07822 SRPBCC_4 Ligand-bindin 99.2 5.3E-09 1.2E-13 74.4 16.8 108 7-124 2-111 (141)
17 PF03364 Polyketide_cyc: Polyk 99.2 2.2E-09 4.7E-14 76.6 14.1 111 13-135 1-113 (130)
18 cd07825 SRPBCC_7 Ligand-bindin 99.1 4.2E-09 9.1E-14 76.2 15.0 137 7-150 2-143 (144)
19 cd05018 CoxG Carbon monoxide d 99.1 1.3E-08 2.7E-13 73.1 15.6 112 6-127 2-115 (144)
20 cd07814 SRPBCC_CalC_Aha1-like 99.1 4.3E-09 9.3E-14 75.2 12.3 110 7-126 2-112 (139)
21 cd07818 SRPBCC_1 Ligand-bindin 99.0 1.7E-08 3.7E-13 73.6 14.5 111 6-127 3-119 (150)
22 cd07817 SRPBCC_8 Ligand-bindin 99.0 1.8E-08 3.9E-13 72.0 14.2 106 7-127 2-108 (139)
23 cd07823 SRPBCC_5 Ligand-bindin 98.9 1.2E-07 2.5E-12 69.5 13.7 111 8-127 2-116 (146)
24 COG3427 Carbon monoxide dehydr 98.5 3E-06 6.6E-11 63.1 10.7 135 6-151 2-144 (146)
25 COG5637 Predicted integral mem 98.5 1.8E-06 4E-11 66.2 9.4 113 1-127 66-179 (217)
26 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 1.2E-05 2.6E-10 57.2 11.5 131 6-150 1-134 (136)
27 COG2867 Oligoketide cyclase/li 98.3 6.2E-06 1.3E-10 61.2 8.8 112 6-127 3-114 (146)
28 cd08898 SRPBCC_CalC_Aha1-like_ 98.3 2.3E-05 5E-10 56.3 11.2 134 6-151 2-144 (145)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.3 0.00023 5E-09 51.7 16.6 135 7-150 2-141 (143)
30 PF06240 COXG: Carbon monoxide 98.3 8.9E-05 1.9E-09 54.3 14.3 107 10-127 2-111 (140)
31 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 3.4E-05 7.3E-10 57.4 11.9 124 5-150 11-135 (157)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 0.00014 3.1E-09 52.3 14.0 127 6-151 1-132 (133)
33 cd08894 SRPBCC_CalC_Aha1-like_ 98.1 9.6E-05 2.1E-09 53.6 12.3 133 7-151 2-138 (139)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.1 0.00061 1.3E-08 49.7 16.2 133 7-150 2-144 (146)
35 cd08876 START_1 Uncharacterize 98.1 0.00067 1.5E-08 51.7 16.2 136 5-148 41-192 (195)
36 cd07826 SRPBCC_CalC_Aha1-like_ 98.0 0.00041 8.8E-09 50.6 12.7 136 7-151 2-141 (142)
37 cd08896 SRPBCC_CalC_Aha1-like_ 97.9 0.002 4.2E-08 47.0 15.6 130 7-151 2-145 (146)
38 cd08891 SRPBCC_CalC Ligand-bin 97.5 0.006 1.3E-07 44.6 13.3 131 7-150 2-147 (149)
39 COG3832 Uncharacterized conser 97.5 0.0055 1.2E-07 45.4 12.4 140 3-151 6-148 (149)
40 PF08327 AHSA1: Activator of H 97.4 0.0044 9.6E-08 43.1 11.0 121 14-150 1-123 (124)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.4 0.0055 1.2E-07 44.2 11.2 97 7-121 2-99 (136)
42 cd08892 SRPBCC_Aha1 Putative h 97.2 0.032 7E-07 39.7 13.2 98 7-123 2-100 (126)
43 cd08873 START_STARD14_15-like 97.1 0.098 2.1E-06 42.0 17.0 143 6-153 78-235 (235)
44 PTZ00220 Activator of HSP-90 A 96.5 0.034 7.4E-07 40.2 9.2 119 13-150 1-126 (132)
45 PF08982 DUF1857: Domain of un 96.4 0.1 2.2E-06 39.0 11.2 92 16-127 19-110 (149)
46 cd08874 START_STARD9-like C-te 96.1 0.38 8.3E-06 37.7 13.8 119 7-130 47-181 (205)
47 cd08863 SRPBCC_DUF1857 DUF1857 96.0 0.43 9.4E-06 35.4 13.3 95 16-130 18-113 (141)
48 cd08913 START_STARD14-like Lip 95.5 1 2.2E-05 36.2 15.1 141 6-153 82-240 (240)
49 cd08914 START_STARD15-like Lip 93.4 3.5 7.6E-05 33.1 15.8 139 6-152 79-235 (236)
50 cd00177 START Lipid-binding ST 93.0 2.7 5.9E-05 30.9 15.7 117 6-127 40-167 (193)
51 cd08905 START_STARD1-like Chol 92.9 3.6 7.8E-05 32.0 14.3 137 7-150 51-206 (209)
52 cd08868 START_STARD1_3_like Ch 92.6 3.8 8.2E-05 31.6 16.4 141 7-151 50-206 (208)
53 cd08911 START_STARD7-like Lipi 89.1 8.9 0.00019 29.7 13.2 110 7-121 47-173 (207)
54 cd08877 START_2 Uncharacterize 88.4 10 0.00022 29.3 13.1 135 6-148 47-210 (215)
55 cd08906 START_STARD3-like Chol 88.3 10 0.00023 29.5 15.3 137 6-150 50-206 (209)
56 cd08903 START_STARD5-like Lipi 87.9 11 0.00024 29.2 16.0 117 7-127 48-180 (208)
57 cd08869 START_RhoGAP C-termina 87.7 11 0.00024 28.9 14.1 114 7-127 46-170 (197)
58 PF11485 DUF3211: Protein of u 87.7 9.4 0.0002 28.2 10.6 99 6-123 2-101 (136)
59 COG4276 Uncharacterized conser 85.8 12 0.00027 27.8 12.1 115 5-127 2-120 (153)
60 cd08870 START_STARD2_7-like Li 84.2 17 0.00037 28.0 16.3 114 7-125 52-179 (209)
61 PF10698 DUF2505: Protein of u 83.6 16 0.00034 27.1 11.7 112 8-127 2-130 (159)
62 KOG3177 Oligoketide cyclase/li 82.2 8.9 0.00019 30.4 7.4 108 13-127 76-183 (227)
63 cd08871 START_STARD10-like Lip 82.0 22 0.00047 27.6 15.5 116 7-127 49-175 (222)
64 cd08867 START_STARD4_5_6-like 78.8 27 0.00059 26.7 16.5 137 7-150 48-205 (206)
65 smart00234 START in StAR and p 73.5 36 0.00078 25.6 17.3 139 6-150 46-200 (206)
66 cd08908 START_STARD12-like C-t 56.0 96 0.0021 24.2 13.0 113 6-127 53-177 (204)
67 cd08872 START_STARD11-like Cer 51.5 1.2E+02 0.0026 24.0 13.2 138 7-152 54-226 (235)
68 cd00255 nidG2 Nidogen, G2 doma 50.7 76 0.0017 25.4 6.6 83 4-91 36-126 (224)
69 PF07474 G2F: G2F domain; Int 41.6 61 0.0013 25.3 4.7 35 56-91 92-127 (192)
70 PF11687 DUF3284: Domain of un 39.0 1.4E+02 0.003 21.1 9.5 99 9-125 3-103 (120)
71 smart00682 G2F G2 nidogen doma 37.5 73 0.0016 25.5 4.7 82 5-91 39-127 (227)
72 cd08910 START_STARD2-like Lipi 35.0 2.1E+02 0.0045 22.0 12.9 114 7-127 51-179 (207)
73 PF02087 Nitrophorin: Nitropho 33.4 1.7E+02 0.0038 22.5 5.9 25 68-92 49-74 (178)
74 PHA02629 A-type inclusion body 33.0 3.5 7.7E-05 25.4 -2.7 43 106-150 14-56 (61)
75 COG0231 Efp Translation elonga 27.5 1.9E+02 0.0041 20.9 5.1 34 70-103 59-98 (131)
76 PF07617 DUF1579: Protein of u 25.4 2.9E+02 0.0063 20.6 6.2 45 44-88 92-142 (159)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=5.4e-49 Score=294.59 Aligned_cols=150 Identities=37% Similarity=0.626 Sum_probs=141.5
Q ss_pred CCcceEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCC
Q 031775 1 MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDAN 79 (153)
Q Consensus 1 M~~~~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~ 79 (153)
|. .++++.|+++++||+|+|++|++.++++||++|++|+|||++|||||..||||+|+|.++++.+++|||++ +|++|
T Consensus 1 m~-~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MG-VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SC-EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred CC-cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence 66 79999999999999999999998889999999999999999999964445999999999999999999999 99999
Q ss_pred cEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcC
Q 031775 80 MSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG 153 (153)
Q Consensus 80 ~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yll~~ 153 (153)
++++|++||||++..|++|..++++.|+++|| |+++|+++||+++++.|+|+.+++++..++|+||+|||+|
T Consensus 80 ~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~--~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLGDYKSFKSTIQKIPKGDGG--CVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGTTTEEEEEEEEEEEETTSC--EEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccccEEEEEEEEEecCCCCCc--eEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=3.3e-38 Score=234.78 Aligned_cols=145 Identities=31% Similarity=0.466 Sum_probs=133.8
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccc-cCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEE
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPT-ASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSV 82 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk-~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~ 82 (153)
|+++.+++|+|||+++|++++|+.+.+|+ |+| .|++|++++|+ |++||||.|+|.++++..++||||+ +|+++|++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~ 78 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY 78 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence 57899999999999999999999655655 555 69999999999 8999999999999887789999999 99999999
Q ss_pred EEEEEeccccc-ceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhhhcC
Q 031775 83 TLIGLEGDVFK-HFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHITKG 153 (153)
Q Consensus 83 ~y~vieGd~~~-~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yll~~ 153 (153)
+|+++||+++. +|++|.++++|.|.++++ |+++|+++|++.++++++|+.+++++..+++++++|++.+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~--t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGG--CVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCC--EEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 99999999975 899999999999997776 9999999999999999999999999999999999999753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.74 E-value=3.3e-16 Score=111.90 Aligned_cols=134 Identities=19% Similarity=0.314 Sum_probs=109.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
.++.+++|++|++++|+++.|. ..+|+|+|. ++++++++++. ++|+++.+.+..+ ..+++++. +|+.++.++|
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~-~~~~~w~~~-~~~~~~~~~~~-~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~ 75 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDF-GGLHKWHPA-VASCELEGGGP-GVGAVRTVTLKDG---GTVRERLLALDDAERRYSY 75 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCc-CchhhhccC-cceEEeecCCC-CCCeEEEEEeCCC---CEEEEEehhcCccCCEEEE
Confidence 5788999999999999999999 678999998 88999988763 7999999999755 47889999 9988889999
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCCh---hhHHHHHHHHHHHHHhhh
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDP---VAYVDFMVSITKDVADHI 150 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p---~~~~~~~~~~~k~ve~yl 150 (153)
++.+|+. ++.++..+++++|.++|+ |.++|+.+|+..+. .+.+ ..+.+.....++.|+++|
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~--t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 76 RIVEGPL--PVKNYVATIRVTPEGDGG--TRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EecCCCC--CcccceEEEEEEECCCCc--cEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999854 667888999999988766 99999999999876 2222 222445566666777665
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.56 E-value=2e-12 Score=92.28 Aligned_cols=105 Identities=24% Similarity=0.389 Sum_probs=87.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
+++.++.|++||+++|+.+.|+ ..+|+|+|. +.++++++|+ ++|..+.+.. .|. ..+.+++. ++++++.+.|
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~-~~~~~w~~~-~~~~~~~~~~--~~~~~~~~~~--~g~-~~~~~~i~~~~~~~~~~~~ 75 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDP-ENWPRWWPG-VKSVELLSGG--GPGTERTVRV--AGR-GTVREEITEYDPEPRRITW 75 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTT-TGGGGTSTT-EEEEEEEEEC--STEEEEEEEE--CSC-SEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEECCCHHHHHHHHhCh-hhhhhhhhc-eEEEEEcccc--ccceeEEEEe--ccc-cceeEEEEEecCCCcEEEE
Confidence 7899999999999999999999 789999998 9999988744 4555566654 343 47899999 9988999999
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEe
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEK 124 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~ 124 (153)
++. ..++..+..++++.|.++| |.++|+.+|+.
T Consensus 76 ~~~----~~~~~~~~~~~~~~~~~~g---t~v~~~~~~~~ 108 (139)
T PF10604_consen 76 RFV----PSGFTNGTGRWRFEPVGDG---TRVTWTVEFEP 108 (139)
T ss_dssp EEE----SSSSCEEEEEEEEEEETTT---EEEEEEEEEEE
T ss_pred EEE----ecceeEEEEEEEEEEcCCC---EEEEEEEEEEE
Confidence 996 2355678999999998866 99999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=4e-13 Score=97.47 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=91.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecC----CceeeEEEEEE-EeCCCcE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVE----GRTETFKEKVE-HDDANMS 81 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~----g~~~~~kEri~-iD~e~~~ 81 (153)
|+.++.|++|++++|+++.|+ ..+|+|+|. +++++++++.+ .+....+....+ .....+..++. .++.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~-~~~~~w~p~-v~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDY-DNLAEFIPN-LAESRLLERNG--NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHhCh-hhHHhhCcC-ceEEEEEEcCC--CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 467899999999999999999 788999999 99999998752 222111111000 01124455566 6666899
Q ss_pred EEEEEEecccccceEEEEEEEEEeecCC-CCCeeEEEEEEEEEecCCCCCChhhH-----HHHHHHHHHHHHhh
Q 031775 82 VTLIGLEGDVFKHFKSWLPVYKVSPKGD-GSAGSIATCSIAYEKLNANVPDPVAY-----VDFMVSITKDVADH 149 (153)
Q Consensus 82 ~~y~vieGd~~~~~~s~~~~~~v~~~~~-gg~~s~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ve~y 149 (153)
+.|++++|++ +.|.+++++.|.++ |+ |.++|+++|++... .| ..+ .+....+++++.+.
T Consensus 77 i~~~~~~g~~----~~~~g~w~~~~~~~~~~--t~v~~~~~~~~~~~-~p--~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 77 LDFEMVEGDF----KRFEGSWRLEPLADGGG--TLLTYEVEVKPDFF-AP--VFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred EEEEEcCCch----hceEEEEEEEECCCCCe--EEEEEEEEEEeCCC-CC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998864 68899999999988 55 99999999998753 22 222 23445556655543
No 6
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=3.1e-12 Score=91.71 Aligned_cols=114 Identities=24% Similarity=0.288 Sum_probs=84.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEE
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTL 84 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y 84 (153)
-+++.++.|++|++++|+++.|. ..+|+|+|. +.++++++++.++.+....++...++-.....-+++.++ .+.++|
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~-~~~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 78 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADV-EAYPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDG-AGSVSW 78 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhCh-hhhhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcC-CCcEEE
Confidence 37899999999999999999999 789999999 999999776423333344455543332222222333344 788999
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+..+|. +..++..+++++|.++| |.++|+.+++....
T Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~~~---t~vt~~~~~~~~~~ 115 (140)
T cd07819 79 TLVEGE---GNRSQEGSYTLTPKGDG---TRVTFDLTVELTVP 115 (140)
T ss_pred EEeccc---ceeEEEEEEEEEECCCC---EEEEEEEEEEecCC
Confidence 999875 45678899999998774 99999999998653
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=5.8e-12 Score=89.63 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=86.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLI 85 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~ 85 (153)
++.++.|++|++++|+.+.|+ ..+|+|.|. +.+++.+.++..++|+...+....++....++.++. +| .++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~-~~~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADF-ENAPEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCc-cchhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEec-CCcEEEEE
Confidence 357889999999999999999 789999999 788888765435789998887765554456788899 77 56889999
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEe
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEK 124 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~ 124 (153)
..+|.+ .+..++++.|.++| |.++|+.+|..
T Consensus 78 ~~~~~~-----~~~~~~~~~~~~~~---t~v~~~~~~~~ 108 (140)
T cd08865 78 GSSGPF-----PYEDTYTFEPVGGG---TRVRYTAELEP 108 (140)
T ss_pred ecCCCc-----ceEEEEEEEEcCCc---eEEEEEEEEcc
Confidence 877644 36788999997654 99999999986
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.42 E-value=6.5e-12 Score=90.97 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=97.2
Q ss_pred EEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEEE
Q 031775 8 EKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGL 87 (153)
Q Consensus 8 ~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~vi 87 (153)
+.++.|++|++.+|+++.|. ..+|+|+|. ++++++++++ + .+....++....+....+..++.+++ ++++++..+
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~-~~~~~~~p~-~~~~~vl~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADV-ERYPEFLPW-CTASRVLERD-E-DELEAELTVGFGGIRESFTSRVTLVP-PESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHH-HhhhhhcCC-ccccEEEEcC-C-CEEEEEEEEeeccccEEEEEEEEecC-CCEEEEEec
Confidence 57889999999999999999 889999999 9999999976 2 44555566655554445556667665 678999999
Q ss_pred ecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH-----HHHHHHHHHHHHhh
Q 031775 88 EGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY-----VDFMVSITKDVADH 149 (153)
Q Consensus 88 eGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ve~y 149 (153)
+|++ +.+.+++++.|.++|+ |.|+|.++|++.+. -|..+ .+....+++++++.
T Consensus 77 ~g~~----~~~~g~w~~~p~~~~~--T~v~~~~~~~~~~~---l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 77 DGPF----KHLEGEWRFKPLGENA--CKVEFDLEFEFKSR---LLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred CCCh----hhceeEEEEEECCCCC--EEEEEEEEEEECCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9854 6788999999998776 99999999999854 23222 34455556665554
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.40 E-value=2.4e-11 Score=87.89 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=84.0
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIG 86 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~v 86 (153)
++.++.|++|++++|+++.|+ ..+|+|+|. .+++.++++ ++...++.|....+|.........++|++.+.+.|..
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~-~~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADA-ERWPEFLPT--VHVERLELD-GGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhH-HhhhccCCC--ceEEEEEEc-CCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEE
Confidence 467899999999999999999 789999998 455655543 2222456566654443333333333888899999999
Q ss_pred EecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 87 LEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 87 ieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+++.. .+..+.++++++|.++++ |.|+|+.+|+....
T Consensus 77 ~~~~~--~~~~~~g~w~~~~~~~~~--t~Vt~~~~~~~~~~ 113 (142)
T cd08861 77 EEPPP--PVASMSGEWRFEPLGGGG--TRVTLRHDFTLGID 113 (142)
T ss_pred eeCCC--ChhhheeEEEEEECCCCc--EEEEEEEEEEECCC
Confidence 98433 357888899999988666 99999999998854
No 10
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=1.8e-10 Score=79.76 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=90.0
Q ss_pred EEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEEE
Q 031775 8 EKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLIG 86 (153)
Q Consensus 8 ~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~v 86 (153)
+.++.|++|++++|+++.|. ..+|+|+|. +.++++.++.....|....+.+. ++.....+.++. +++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDP-ERWPEWSPG-LERVEVLGGGEGGVGARFVGGRK-GGRRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhCh-hhhhhhCcc-cceEEEcCCCCccceeEEEEEec-CCccccceEEEEEecC-CCceEEEE
Confidence 56889999999999999998 789999999 88999887654567777776665 233346788888 766 77899999
Q ss_pred EecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCC
Q 031775 87 LEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNAN 128 (153)
Q Consensus 87 ieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~ 128 (153)
..++.. ..+..++++.+.++++ |.+.|+.+|......
T Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~~--t~v~~~~~~~~~~~~ 114 (141)
T cd07812 78 TGGGGG---VDGTGEWRLEPEGDGG--TRVTYTVEYDPPGPL 114 (141)
T ss_pred ecCCCC---cceeEEEEEEECCCCc--EEEEEEEEEecCCcc
Confidence 987763 6788899999987744 999999999987654
No 11
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.26 E-value=8.7e-10 Score=81.85 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=87.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEE
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTL 84 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y 84 (153)
|..+.+|+|++||+++|+++.|. ...|.|+|. ++++++++.++.+.|+--++.+..+|....+.-+...|...+++.+
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv-~~~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~ 78 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDI-ATWPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRA 78 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhh-hhhhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEE
Confidence 35678999999999999999999 889999999 9999999865345664333334335545455445457888888887
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCC
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNAN 128 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~ 128 (153)
+-.. + .++..-..+++|+|.++| |.|++..+|+..++.
T Consensus 79 ~~~~-~--~p~~~m~~~W~f~~~~~g---T~V~~~~~~~~~~~~ 116 (146)
T cd08860 79 RRVE-T--GPFAYMNIRWEYTEVPEG---TRMRWVQDFEMKPGA 116 (146)
T ss_pred EEec-C--CCcceeeeeEEEEECCCC---EEEEEEEEEEECCCC
Confidence 5111 1 257888999999998654 999999999987643
No 12
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.22 E-value=1.8e-09 Score=77.18 Aligned_cols=105 Identities=20% Similarity=0.126 Sum_probs=78.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
+++.++.|+||++++|+++.|+ ..+|+|+|+ ++++++..+. .++|+...++... + ..+..++. +++ .+.+++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~-~~~~~w~~~-~~~~~~~~~~-~~~G~~~~~~~~~-~--~~~~~~i~~~~p-~~~~~~ 74 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDV-ENWPAWTPS-VETVRLEGPP-PAVGSSFKMKPPG-L--VRSTFTVTELRP-GHSFTW 74 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhh-hhcccccCc-ceEEEEecCC-CCCCcEEEEecCC-C--CceEEEEEEecC-CCEEEE
Confidence 5788999999999999999999 788999998 8999987654 2678766665432 2 24566777 774 456787
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEe
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEK 124 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~ 124 (153)
+.... ...+..++++++.++++ |.++|+.+|..
T Consensus 75 ~~~~~-----~~~~~~~~~~~~~~~~~--t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPAP-----GISAVHRHEFEAKPDGG--VRVTTSESLSG 107 (138)
T ss_pred EecCC-----CEEEEEEEEEEEcCCCc--EEEEEEEEeec
Confidence 65332 23556788999977565 99999888864
No 13
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=1.9e-09 Score=79.06 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=79.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEe-CccCCCCcEEEEEEecC-CceeeEEEEEEEeCCCcEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHE-GEWHHHGSVKLWTYSVE-GRTETFKEKVEHDDANMSVT 83 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~e-Gd~g~~Gsvr~~~~~~~-g~~~~~kEri~iD~e~~~~~ 83 (153)
.++.+..|++|++++|+++.|. ..+|+|+|. +.++++++ |++.++|+.-+++.... +....+.-++.-.+.++.+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~-~~~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 79 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDA-ESWPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLE 79 (146)
T ss_pred cceEEEEecCCHHHHHHHHhCh-hhcchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEE
Confidence 3567889999999999999999 889999998 99999988 34357887765554322 21123334444224577889
Q ss_pred EEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecC
Q 031775 84 LIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLN 126 (153)
Q Consensus 84 y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~ 126 (153)
|+. +|++. ...++++.|.++| |.|+++.+++..+
T Consensus 80 ~~~-~g~~~-----~~~~~~~~~~~~g---t~vt~~~~~~~~~ 113 (146)
T cd07824 80 VRA-SGDLE-----GVGRWTLAPDGSG---TVVRYDWEVRTTK 113 (146)
T ss_pred EEE-EEeee-----EEEEEEEEEcCCC---EEEEEEEEEEcCH
Confidence 884 67652 2578889996554 9999999999765
No 14
>PRK10724 hypothetical protein; Provisional
Probab=99.20 E-value=1.1e-09 Score=82.48 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=96.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLI 85 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~ 85 (153)
.+..++.+++|++++|+++.|. ...|+|+|. .+++++++-+++ +.+..++.+-+|-...+..++.+++. +++.+.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dv-e~yp~flp~-~~~s~vl~~~~~--~~~a~l~v~~~g~~~~f~srv~~~~~-~~I~~~ 90 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDV-QSYPQFLPG-CTGSRVLESTPG--QMTAAVDVSKAGISKTFTTRNQLTSN-QSILMQ 90 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHH-HHHHHhCcc-cCeEEEEEecCC--EEEEEEEEeeCCccEEEEEEEEecCC-CEEEEE
Confidence 6778899999999999999999 789999999 888888885422 33445555555655677778886443 389999
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH-----HHHHHHHHHHHHh
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY-----VDFMVSITKDVAD 148 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ve~ 148 (153)
+++|+ ++++.+.|++.|.++++ |.|+++++|+..+. -+..+ ++.+..|.+++++
T Consensus 91 ~~~Gp----F~~l~g~W~f~p~~~~~--t~V~~~l~fef~s~---l~~~~~~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 91 LVDGP----FKKLIGGWKFTPLSQEA--CRIEFHLDFEFTNK---LIELAFGRVFKELASNMVQAFTV 149 (158)
T ss_pred ecCCC----hhhccceEEEEECCCCC--EEEEEEEEEEEchH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 47899999999988765 99999999997644 22222 3444555555553
No 15
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=7.7e-10 Score=80.34 Aligned_cols=109 Identities=15% Similarity=0.247 Sum_probs=86.3
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCcc--CCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEW--HHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVT 83 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~--g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~ 83 (153)
++.++.|++|++++|+.+.|. ..+|+|+|. +.++++++.+. ..+|+.-.+.....+..-.++-++. ++ .++.++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~-~~~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~-p~~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRP-DNLERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVE-PPRRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCc-chHHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEc-CCCeEE
Confidence 467899999999999999999 789999999 88999985332 2468888888877664445566666 55 456788
Q ss_pred EEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEec
Q 031775 84 LIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKL 125 (153)
Q Consensus 84 y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~ 125 (153)
+..+.|. +.++..+..+.|.++| |.++++++|+..
T Consensus 78 ~~~~~G~----~~~w~h~~~f~~~~~g---T~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGP----FRSWRHTHRFEAIGGG---TLMTDRVEYRLP 112 (137)
T ss_pred EEeccCC----chhCEEEEEEEECCCc---eEEEEEEEEeCC
Confidence 8877764 4678888899987664 999999999973
No 16
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.18 E-value=5.3e-09 Score=74.43 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=80.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCC-ceeeEEEEEE-EeCCCcEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEG-RTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g-~~~~~kEri~-iD~e~~~~~y 84 (153)
++.++.|++|++++|+++.|. ..+|+|+|. +..++... .++|+...+.+..++ .......++. +|+ ++.+.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~-~~~~~w~~~-~~~~~~~~---~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDF-PSYPEWNPF-VRSATGLS---LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcc-ccccccChh-heeEeccc---cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEE
Confidence 678999999999999999999 788999997 65655431 257888888775432 3346777788 876 578899
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEe
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEK 124 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~ 124 (153)
+...++. ..-....++.+.|.++++ |.+.|+..|..
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~--T~~~~~~~~~g 111 (141)
T cd07822 76 RGGLPFP--GLLDGEHSFELEPLGDGG--TRFVHRETFSG 111 (141)
T ss_pred EecCCCC--cEeeEEEEEEEEEcCCCc--EEEEEeeEEEE
Confidence 9877654 223456788999975565 99999887754
No 17
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.17 E-value=2.2e-09 Score=76.57 Aligned_cols=111 Identities=21% Similarity=0.367 Sum_probs=83.9
Q ss_pred EcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEEEecccc
Q 031775 13 IEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVF 92 (153)
Q Consensus 13 i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~vieGd~~ 92 (153)
|++|++++|+++.|. ..+|.|+|. ++++++++.++ . +..-.+....++....+..++..+.... +.+..++|++
T Consensus 1 V~ap~~~V~~~i~D~-e~~~~~~p~-~~~v~vl~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~- 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDY-ENYPRFFPP-VKEVRVLERDG-D-GMRARWEVKFGGIKRSWTSRVTEDPPER-IRFEQISGPF- 74 (130)
T ss_dssp ESS-HHHHHHHHTTG-GGHHHHCTT-EEEEEEEEEEC-C-EEEEEEEECTTTTCEEEEEEEEEECTTT-EEEESSETTE-
T ss_pred CCCCHHHHHHHHHHH-HHHHHhCCC-CceEEEEEeCC-C-eEEEEEEEecCCEEEEEEEEEEEEEeee-eeeeecCCCc-
Confidence 689999999999999 889999999 99999999873 2 4444667766665667777887445555 8888877765
Q ss_pred cceEEEEEEEEEeecCC--CCCeeEEEEEEEEEecCCCCCChhhH
Q 031775 93 KHFKSWLPVYKVSPKGD--GSAGSIATCSIAYEKLNANVPDPVAY 135 (153)
Q Consensus 93 ~~~~s~~~~~~v~~~~~--gg~~s~v~wt~~ye~~~~~~~~p~~~ 135 (153)
+.+..++++.|.++ || |.++++.+|+.... .+.|..+
T Consensus 75 ---~~~~g~W~~~~~~~~~~g--~~~~v~~~~~~~~~-~~~~~~~ 113 (130)
T PF03364_consen 75 ---KSFEGSWRFEPLGGNEGG--TRTRVTYDYEVDPP-GPLPGFL 113 (130)
T ss_dssp ---EEEEEEEEEEEETTECCE--EEEEEEEEEEEETS-SSSHHHH
T ss_pred ---hhcEEEEEEEECCCCcCC--CEEEEEEEEEEecC-cHhHHHH
Confidence 89999999999886 22 78888888887444 2445544
No 18
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.14 E-value=4.2e-09 Score=76.24 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=90.3
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCcc-CCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEW-HHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~-g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
++.++.|+||++++|+++.|+ ..+|+|.|... ......++. -++|+...+.....|....+..++. +++ ++.++|
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~-~~~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~ 78 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADP-RRHPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEE-NRLIAW 78 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCc-cccceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECC-CCEEEE
Confidence 678999999999999999999 78999998633 223333431 3789988877754333334556677 665 556888
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCC--C-ChhhHHHHHHHHHHHHHhhh
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANV--P-DPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~--~-~p~~~~~~~~~~~k~ve~yl 150 (153)
+..-.+. .......++.++|.++|+ |.++++.+|.-.+... + ............+..|++||
T Consensus 79 ~~~~~~~--~~~~~~~~~~l~~~~~g~--T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 79 RPGPAGQ--EPGGHRWRWELEPIGPGR--TRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EccCCCC--CCCceeEEEEEEECCCCc--EEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8541111 112244577888987776 9999999887664411 1 12333555667777777775
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.10 E-value=1.3e-08 Score=73.10 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=75.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEE--EEEEEeCCCcEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFK--EKVEHDDANMSVT 83 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~k--Eri~iD~e~~~~~ 83 (153)
+++.++.+++|++++|+++.|. ..+|+|+|. ++++++++++ .... .+++..+....... -++.-.++++++.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~-~~~~~w~p~-~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDP-EVLARCIPG-CESLEKIGPN--EYEA--TVKLKVGPVKGTFKGKVELSDLDPPESYT 75 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCH-HHHHhhccc-hhhccccCCC--eEEE--EEEEEEccEEEEEEEEEEEEecCCCcEEE
Confidence 4778999999999999999999 889999999 8888887643 1111 12222222112332 3333123446677
Q ss_pred EEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 84 LIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 84 y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
++....+. .....+..++++.|. ++| |.++|+++|+..+.
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~l~~~-~~g--T~v~~~~~~~~~g~ 115 (144)
T cd05018 76 ITGEGKGG-AGFVKGTARVTLEPD-GGG--TRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEcCC-CceEEEEEEEEEEec-CCc--EEEEEEEEEEEccC
Confidence 77654222 235689999999998 454 99999999997754
No 20
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.08 E-value=4.3e-09 Score=75.16 Aligned_cols=110 Identities=10% Similarity=0.011 Sum_probs=78.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLI 85 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~ 85 (153)
++.+++|++|++++|+++.|. ..+|+|+|. +..++ ++....|+.+.+....+|....+..++. +|+ ++.+.|+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~-~~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~~~~~~~~i~~~~~-~~~i~~~ 75 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDP-ELLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGEEGWVSGEVLEVEP-PRRLVFT 75 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCH-HHHHhhhCc-CCceE---EcccCCceEEEEEECCCCCEEeccEEEEEEcC-CCeEEEE
Confidence 578899999999999999999 789999996 22222 2211226777655544444456778888 774 5789999
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecC
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLN 126 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~ 126 (153)
...++. ...-....++++.|.+++ |.++|+.+|....
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~---T~v~~~~~~~~~~ 112 (139)
T cd07814 76 WAFSDE-TPGPETTVTVTLEETGGG---TRLTLTHSGFPEE 112 (139)
T ss_pred ecccCC-CCCCceEEEEEEEECCCC---EEEEEEEEccChH
Confidence 888753 122356778889998744 9999999998763
No 21
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=1.7e-08 Score=73.58 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=79.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceee---EEEE--eCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCC
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKA---VDVH--EGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDAN 79 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~s---ve~~--eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~ 79 (153)
+++.++.|++|++++|+.+.|. ..+|+|+|. ... ++.. .++ .++|+...|+...+ ......++. ++ .+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~-~~~~~W~p~-~~~~~~~~~~~~~~~-~~~G~~~~~~~~~~--~~~~~~~v~~~~-p~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDL-KNWPEWSPW-EKLDPDMKRTYSGPD-SGVGASYSWEGNDK--VGEGEMEITESV-PN 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCc-ccCcccCch-hhcCcceEEEecCCC-CCCCeEEEEecCCc--ccceEEEEEecC-CC
Confidence 6789999999999999999999 889999996 333 2221 233 46888877766542 112344566 64 46
Q ss_pred cEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 80 MSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 80 ~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+.+.|+...++... .....+++++|.++ | |.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~-g--T~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKPFE--ATNDVEFTLEPVGG-G--TKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCCcc--ccceEEEEEEEcCC-c--eEEEEEEEecCCch
Confidence 78999988644321 36789999999944 4 99999999986543
No 22
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.03 E-value=1.8e-08 Score=71.99 Aligned_cols=106 Identities=19% Similarity=0.300 Sum_probs=77.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLI 85 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~ 85 (153)
++.++.|++|++++|+++.|. ..+|+|.|. +++++++.|. +.-..+.+.. |....+..++. +++ ++.+.|.
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~-~~~~~w~~~-~~~~~~~~~~----~~~~~~~~~~-g~~~~~~~~v~~~~~-~~~i~~~ 73 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDF-ENLPRFMSH-VESVEQLDDT----RSHWKAKGPA-GLSVEWDAEITEQVP-NERIAWR 73 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhCh-hhhHHHhhh-hcEEEEcCCC----ceEEEEecCC-CCcEEEEEEEeccCC-CCEEEEE
Confidence 678999999999999999999 889999998 8899987542 2222222222 44345566666 544 5569998
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
...|.+ .+..++.+.|.++++ |.+++++.|++...
T Consensus 74 ~~~~~~-----~~~~~~~f~~~~~~~--T~vt~~~~~~~~~~ 108 (139)
T cd07817 74 SVEGAD-----PNAGSVRFRPAPGRG--TRVTLTIEYEPPGG 108 (139)
T ss_pred ECCCCC-----CcceEEEEEECCCCC--eEEEEEEEEECCcc
Confidence 766542 466888899977655 99999999997753
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.88 E-value=1.2e-07 Score=69.49 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=72.8
Q ss_pred EEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEE--EEE-EeCCCcEEEE
Q 031775 8 EKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKE--KVE-HDDANMSVTL 84 (153)
Q Consensus 8 ~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kE--ri~-iD~e~~~~~y 84 (153)
+.++++++|++++|+++.|. ..+|.|+|+ +++++.+.++ . ....++...++-...++- ++. ++++.+++.+
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~-~~~~~~~pg-~~~~~~~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDI-ERVAPCLPG-ASLTEVEGDD--E--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CceEEecCCHHHHHHHhcCH-HHHHhcCCC-ceeccccCCC--e--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 46788999999999999998 889999998 8888865432 1 222334433332223332 344 4547888887
Q ss_pred EEEecccc-cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 85 IGLEGDVF-KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 85 ~vieGd~~-~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+.-.-+.. ..--+...++++.|. +|| |.++|+++++..+.
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~l~~~-~~g--T~v~~~~~~~~~g~ 116 (146)
T cd07823 76 EATGKDARGQGTAEATVTLRLSPA-GGG--TRVTVDTDLALTGK 116 (146)
T ss_pred EEEEecCCCcceEEEEEEEEEEec-CCc--EEEEEEEEEEEeeE
Confidence 74431111 112267778888884 344 99999999986655
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.47 E-value=3e-06 Score=63.08 Aligned_cols=135 Identities=13% Similarity=0.192 Sum_probs=87.9
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeE--EEEEE-EeCCCcEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETF--KEKVE-HDDANMSV 82 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~--kEri~-iD~e~~~~ 82 (153)
.++-++.|++|++++|+.+.|. ..+...+|+ ++|++. +||. -.+ .+....+-=...+ +=++. +|+..++|
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dp-e~~a~ciPG-~qs~e~-~g~e-~~~---~v~l~ig~l~~~~~g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDP-EQVAACIPG-VQSVET-NGDE-YTA---KVKLKIGPLKGTFSGRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhcCH-HHHHhhcCC-cceeee-cCCe-EEE---EEEEeecceeEEEEEEEEEccccCCCcEE
Confidence 3567899999999999999998 677789999 999994 5661 111 2222222111233 44455 68999999
Q ss_pred EEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCC-CChhhH----HHHHHHHHHHHHhhhh
Q 031775 83 TLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANV-PDPVAY----VDFMVSITKDVADHIT 151 (153)
Q Consensus 83 ~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~-~~p~~~----~~~~~~~~k~ve~yll 151 (153)
+...-.|. +...-..++.++++|.++| |++.|.++=+-.+--. .-+..+ ...+-.++..+.++|-
T Consensus 75 ~i~g~G~~-~~g~~~~~~~v~l~~~g~g---t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 75 TINGSGGG-AAGFADGTVDVQLEPSGEG---TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEEeeccc-ccceeeeeeEEEEEEcCCC---cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88876633 3456678889999998776 8999999766543311 111222 2344556666666553
No 25
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.45 E-value=1.8e-06 Score=66.23 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=90.3
Q ss_pred CCcceEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEec-CCceeeEEEEEEEeCCC
Q 031775 1 MALVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV-EGRTETFKEKVEHDDAN 79 (153)
Q Consensus 1 M~~~~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~-~g~~~~~kEri~iD~e~ 79 (153)
|+-.-.++.+|+|..|++.+|..++|+ ..||.||-. +.||++.+-. + .+|+... +|-.-.++-+|.-|..+
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~dL-e~lP~~Mkh-l~SVkVlddk---r---SrW~~~ap~g~~v~Wea~it~d~~~ 137 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWRDL-ENLPLWMKH-LDSVKVLDDK---R---SRWKANAPLGLEVEWEAEITKDIPG 137 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHHhh-hhhhHHHHh-hceeeccCCC---c---cceeEcCCCCceEEEeehhhccCCC
Confidence 555678999999999999999999999 789999998 9999998754 2 4566643 44445677777788999
Q ss_pred cEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 80 MSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 80 ~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
..|.+.=++|.-.+ -...++|.+.++.. |+|+.++.|.+.+.
T Consensus 138 e~I~W~Sl~Ga~v~----NsG~VrF~~~pg~~--t~V~v~lsY~~Pgg 179 (217)
T COG5637 138 ERIQWESLPGARVE----NSGAVRFYDAPGDS--TEVKVTLSYRPPGG 179 (217)
T ss_pred cEEeeecCCCCcCC----CCccEEeeeCCCCc--eEEEEEEEecCCcc
Confidence 99999999995321 23567888888774 89999999987665
No 26
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.36 E-value=1.2e-05 Score=57.15 Aligned_cols=131 Identities=14% Similarity=0.034 Sum_probs=76.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
|++.++.|++|+++||+++.|. ..+|+|.+... .+++. .+|.--.+.....+ ...+.=++. ++ .++.+.|
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~-~~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~-~~~~~~~v~~~~-~~~~l~~ 71 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDP-EFTRQYWGGTT-----VESDW-KVGSAFEYRRGDDG-TVDVEGEVLESD-PPRRLVH 71 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCc-hhhhheecccc-----cccCC-cCCCeEEEEeCCCc-ccccceEEEEec-CCCeEEE
Confidence 5788999999999999999998 78999998722 24442 45554344433211 112344555 64 5666777
Q ss_pred EEEecccc--cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhh
Q 031775 85 IGLEGDVF--KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 85 ~vieGd~~--~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yl 150 (153)
+...++.. ..-.....++.+.|.++| |.+..+..-...+. ............+++.|.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~~---t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 72 TWRAVWDPEMAAEPPSRVTFEIEPVGDV---VKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEecCCCcccCCCCCEEEEEEEEecCCc---EEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHh
Confidence 76533321 112245667778886553 76666654432211 112222344556777777765
No 27
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.29 E-value=6.2e-06 Score=61.22 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=86.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLI 85 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~ 85 (153)
+++...-++-||+++|+++.|. ...|+.+|- -.+.++.+.+. ..-+-.++-+-.|-.++..-|+..++..++|.-+
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV-~~YP~FlP~-C~~s~v~~~~~--~~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~ 78 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDV-ESYPEFLPW-CSASRVLERNE--RELIAELDVGFKGIRETFTTRVTLKPTARSIDMK 78 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHH-HhCchhccc-cccceEeccCc--ceeEEEEEEEhhheeeeeeeeeeecCchhhhhhh
Confidence 5677788899999999999999 889999998 77888888873 3355555555555456666677755555577777
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+++|.+ +...++|+++|-++++ |.|+.-++||..+-
T Consensus 79 l~~GPF----k~L~~~W~F~pl~~~~--ckV~f~ldfeF~s~ 114 (146)
T COG2867 79 LIDGPF----KYLKGGWQFTPLSEDA--CKVEFFLDFEFKSR 114 (146)
T ss_pred hhcCCh----hhhcCceEEEECCCCc--eEEEEEEEeeehhH
Confidence 777654 7789999999965555 99999999998865
No 28
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.26 E-value=2.3e-05 Score=56.33 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
.++.++.|+||++++|+++.|. ..+++|.|... ....-|. +..| .+.+. +.......-++. + +.++.+.|
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~-~~~~~W~~~~~--~~~~~~~-~~~g---~~~~~-~~~~~~~~~~i~~~-~p~~~l~~ 72 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDP-EHFGQWFGVKL--GPFVVGE-GATG---EITYP-GYEHGVFPVTVVEV-DPPRRFSF 72 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcCh-hhhhhcccccC--CCcccCC-ccee---EEecC-CCCccceEEEEEEe-CCCcEEEE
Confidence 5788999999999999999998 78999999732 1111121 1122 33332 211123344566 5 45667777
Q ss_pred EEEecc----cc-cceEEEEEEEEEeecCCCCCeeEEEEEEE-EEecCCCCC--ChhhHHHHHHHHHHHHHhhhh
Q 031775 85 IGLEGD----VF-KHFKSWLPVYKVSPKGDGSAGSIATCSIA-YEKLNANVP--DPVAYVDFMVSITKDVADHIT 151 (153)
Q Consensus 85 ~vieGd----~~-~~~~s~~~~~~v~~~~~gg~~s~v~wt~~-ye~~~~~~~--~p~~~~~~~~~~~k~ve~yll 151 (153)
+...+. .. ........++++++.++| |.++++-. |...+++.. ......+.-..++..|++||-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---T~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIAGG---TLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EecCCCcccccccCCCCceEEEEEEEecCCc---EEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 754332 10 011234478888887644 99998865 322211100 111223444667777777763
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.26 E-value=0.00023 Score=51.71 Aligned_cols=135 Identities=13% Similarity=0.125 Sum_probs=78.6
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCC-ceeeEEEEeCccCCCCcEEEEEEe-cCCceeeEEEEEE-EeCCCcEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPA-NIKAVDVHEGEWHHHGSVKLWTYS-VEGRTETFKEKVE-HDDANMSVT 83 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~-~i~sve~~eGd~g~~Gsvr~~~~~-~~g~~~~~kEri~-iD~e~~~~~ 83 (153)
+..+-.+++|+++||+++.|. .++.+|+.. .--.++.++.| -.+|..-.+.+. .+|......=++. +++ ++.+.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp-~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p-~~~l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDP-AARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVP-DERIV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCH-HHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecC-CceEE
Confidence 456677899999999999988 778899854 12234445555 345555444443 3554334455666 754 45565
Q ss_pred EEEE--ecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhh
Q 031775 84 LIGL--EGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 84 y~vi--eGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yl 150 (153)
|+-. .++. +...-..++.+++.++| |.+..+-.+-...+. .........-..++..|++||
T Consensus 79 ~t~~~~~~~~--~~~~s~v~~~l~~~~~g---T~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l 141 (143)
T cd08900 79 YTYTMHIGGT--LLSASLATVEFAPEGGG---TRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAEL 141 (143)
T ss_pred EEEeeccCCc--cccceEEEEEEEECCCC---EEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHH
Confidence 5542 2222 11123468888887543 888887665322221 112333445566777777776
No 30
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.26 E-value=8.9e-05 Score=54.25 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=67.5
Q ss_pred EEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeE--EEEEE-EeCCCcEEEEEE
Q 031775 10 QIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETF--KEKVE-HDDANMSVTLIG 86 (153)
Q Consensus 10 ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~--kEri~-iD~e~~~~~y~v 86 (153)
+++|++|++++|+.+.|. ..+-..+|+ +++++.+. +. --+. ++...|.-...+ +=++. +|+.++.. .++
T Consensus 2 s~~v~a~~~~vw~~l~D~-~~l~~ciPG-~~~~e~~~-~~-~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~ 73 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-ENLARCIPG-VESIEKVG-DE-YKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF 73 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-HHHHHHSTT-EEEEEEEC-TE-EEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred cEEecCCHHHHHHHhcCH-HHHHhhCCC-cEEeeecC-cE-EEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence 678999999999999998 677799999 99999876 41 1111 222222222223 33444 56665543 333
Q ss_pred EecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 87 LEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 87 ieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
-..+.. .-.+..+.+++...++++ |.+.|+++++-.+-
T Consensus 74 ~g~g~~-~~~~~~~~~~~~~~~~~~--T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 74 EGRGRG-GGSSASANITLSLEDDGG--TRVTWSADVEVGGP 111 (140)
T ss_dssp EEEECT-CCEEEEEEEEEEECCCTC--EEEEEEEEEEEECH
T ss_pred eccCCc-cceEEEEEEEEEcCCCCC--cEEEEEEEEEEccC
Confidence 332332 224556777777777775 99999999997765
No 31
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.24 E-value=3.4e-05 Score=57.37 Aligned_cols=124 Identities=9% Similarity=-0.008 Sum_probs=78.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEE
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVT 83 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~ 83 (153)
-.+..+..|++|++++|+++.|. ..+++|.|. . .++ -.+|....+.+...+ .....-++. +|+ ++.+.
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~-~------~~~-~~~G~~~~~~~~~~~-~~~~~~~v~e~~p-~~~l~ 79 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDP-ERLARWFAP-G------TGD-LRVGGRVEFVMDDEE-GPNATGTILACEP-PRLLA 79 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCH-HHHHhhcCC-C------CCC-cccCceEEEEecCCC-CCccceEEEEEcC-CcEEE
Confidence 35788999999999999999998 789999994 2 233 356666566654321 124456667 544 56788
Q ss_pred EEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhh
Q 031775 84 LIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 84 y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yl 150 (153)
|+...++. ....++++++.+ || |.++.+.++.+... ......+.-..++..|.+||
T Consensus 80 ~~~~~~~~-----~~~~~~~l~~~~-~g--T~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~ 135 (157)
T cd08899 80 FTWGEGGG-----ESEVRFELAPEG-DG--TRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAAL 135 (157)
T ss_pred EEecCCCC-----CceEEEEEEEcC-CC--EEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHH
Confidence 87765441 234577778765 44 88888877754331 12222333444555555554
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.19 E-value=0.00014 Score=52.27 Aligned_cols=127 Identities=14% Similarity=0.195 Sum_probs=76.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceee--EEEEeCccCCCCcEEEEEEe-cCCce-eeEEEEEE-EeCCCc
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKA--VDVHEGEWHHHGSVKLWTYS-VEGRT-ETFKEKVE-HDDANM 80 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~s--ve~~eGd~g~~Gsvr~~~~~-~~g~~-~~~kEri~-iD~e~~ 80 (153)
|+..+..++||+++||+++.|- ..+.+|++. ... +...+.|. .+|..-.+.+. .++.. ....-++. ++ .++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~-e~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~~g~~~ei~-p~~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTP-EHITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMGFDFEGTYTEVE-PHK 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCH-HHHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCcccccceEEEEEC-CCC
Confidence 5778899999999999999987 788999654 111 22233553 45555444432 23321 22344555 64 467
Q ss_pred EEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhhh
Q 031775 81 SVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHIT 151 (153)
Q Consensus 81 ~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yll 151 (153)
.+.|+...+ ...++.++|.++| |.++.+ +..... ...+.....-...+..|++||-
T Consensus 77 ~l~~~~~~~--------~~v~~~l~~~~~g---T~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG--------REVEVEFTEEGDG---TKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC--------CEEEEEEEECCCC---EEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 788885432 2468888886533 877764 433222 1233344555677778888873
No 33
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.14 E-value=9.6e-05 Score=53.58 Aligned_cols=133 Identities=11% Similarity=0.086 Sum_probs=74.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCC-CceeeEEEEeCccCCCCcEEEEEE-ecCCceeeEEEEEE-EeCCCcEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASP-ANIKAVDVHEGEWHHHGSVKLWTY-SVEGRTETFKEKVE-HDDANMSVT 83 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P-~~i~sve~~eGd~g~~Gsvr~~~~-~~~g~~~~~kEri~-iD~e~~~~~ 83 (153)
++.+..+++|+++||+++.|- ..+.+|.+ ..+. +...+.| ..+|..-.+.+ .++|......-++. +++ ++.+.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p-~~l~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p-~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDP-EHLAQWWGPEGFT-NTTHEFD-LRPGGRWRFVMHGPDGTDYPNRIVFLEIEP-PERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCH-HHHhhccCcCCCc-ceEEEEE-ecCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEE
Confidence 567788999999999999987 67888864 3232 2223444 23444433333 33443222344566 754 56777
Q ss_pred EEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCC-CChhhHHHHHHHHHHHHHhhhh
Q 031775 84 LIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANV-PDPVAYVDFMVSITKDVADHIT 151 (153)
Q Consensus 84 y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~-~~p~~~~~~~~~~~k~ve~yll 151 (153)
|+.-.++. ....+++++|.+ || |.++.+..|....... .......+.-..++..|++||-
T Consensus 78 ~t~~~~~~-----~~~v~~~~~~~~-~g--T~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 78 YDHGSGPP-----RFRLTVTFEEQG-GK--TRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEeccCCC-----cEEEEEEEEECC-CC--EEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 77643311 245788888876 44 8888776542110000 0000112344566777777763
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.11 E-value=0.00061 Score=49.72 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=76.4
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCC-ceeeEEEEeCccCCCCcEEEEEE--ec------CCceeeEEEEEE-Ee
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPA-NIKAVDVHEGEWHHHGSVKLWTY--SV------EGRTETFKEKVE-HD 76 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~-~i~sve~~eGd~g~~Gsvr~~~~--~~------~g~~~~~kEri~-iD 76 (153)
+..+..++||+++||+++.|. ..+.+|.+. .+ .+...+.| -.+|-.-.+.+ .. +|......-++. ++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~-~~~~~W~~p~~~-~~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDP-DALAKWLPPDGM-TGTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCH-HHHhhcCCCCCe-EeEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 567778999999999999988 778898763 22 22333444 23443333333 22 122234445666 75
Q ss_pred CCCcEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhh
Q 031775 77 DANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 77 ~e~~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yl 150 (153)
+. +.+.|+..-.+-..+ .....++.+++.++| |.++++...- .+. .......+.-..++..|++||
T Consensus 79 p~-~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~---T~lt~~~~~~--~~~-~~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08895 79 PN-ERIVYTDVFDDPSLS-GEMTMTWTLSPVSGG---TDVTIVQSGI--PDG-IPPEDCELGWQESLANLAALV 144 (146)
T ss_pred CC-CEEEEEEEecCCCCC-ceEEEEEEEEecCCC---EEEEEEEeCC--Cch-hhhhHHHHHHHHHHHHHHHHh
Confidence 54 456666432221111 133678888887644 8888777542 211 123344556677777888876
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.06 E-value=0.00067 Score=51.70 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=83.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCc---eeeEEEE-EEEeCCCc
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGR---TETFKEK-VEHDDANM 80 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~---~~~~kEr-i~iD~e~~ 80 (153)
-.+..+..+++||+++|+++.|. ...|+|.|. +.+++++|-. +.--.+-...+....+ ...+-.+ ...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~-e~~~~w~~~-~~~~~vie~~-~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDT-ESYPQWMPN-CKESRVLKRT-DDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhh-HhHHHHHhh-cceEEEeecC-CCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 35677888999999999999998 788999998 9999999865 2112333344432221 1222222 22332244
Q ss_pred EEEEEEEeccc--c--cc---eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH-----HHHHHHHHHHHHh
Q 031775 81 SVTLIGLEGDV--F--KH---FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY-----VDFMVSITKDVAD 148 (153)
Q Consensus 81 ~~~y~vieGd~--~--~~---~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ve~ 148 (153)
.+...+..++- . .. ...+.+.+.++|.++++ |.+.+.+.+.+.+. -|..+ +.....+++++++
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~--t~vt~~~~~dp~g~---iP~~lv~~~~~~~~~~~l~~l~~ 192 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGK--TRVTYQAYADPGGS---IPGWLANAFAKDAPYNTLENLRK 192 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCe--EEEEEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444321 1 12 45667778999988775 99999998888753 23333 2333455555554
No 36
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.96 E-value=0.00041 Score=50.62 Aligned_cols=136 Identities=14% Similarity=0.062 Sum_probs=77.6
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEe-cCCceeeEEEEEE-EeCCCcEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS-VEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~-~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
++.+-.+++|+++||+++-|- .++.+|.+..--.+...+.|. .+|..-.+.+. .+|....+.=++. +++ ++.+.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdp-e~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDP-ELVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCH-HHHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEEE
Confidence 456778899999999999987 778888876433444556663 45555455443 3443333445566 755 344444
Q ss_pred EEE-ecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCC-CCChhhHHHHHHHHHHHHHhhhh
Q 031775 85 IGL-EGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNAN-VPDPVAYVDFMVSITKDVADHIT 151 (153)
Q Consensus 85 ~vi-eGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~-~~~p~~~~~~~~~~~k~ve~yll 151 (153)
+-- ++.. . .....++.+.+.+ || |.++.+..|...... ...-....+.-...+..|++||-
T Consensus 79 t~~~~~~~-~--~~s~v~~~l~~~~-~g--T~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLP-D--GVALETVTFTELG-GR--TRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCC-C--CceEEEEEEEECC-CC--EEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 432 2211 1 2345678888875 44 888887655211000 00011123355667778888874
No 37
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.90 E-value=0.002 Score=47.01 Aligned_cols=130 Identities=12% Similarity=0.038 Sum_probs=74.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEE-ecCCceeeEEEEEE-EeCCCcEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTY-SVEGRTETFKEKVE-HDDANMSVTL 84 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~-~~~g~~~~~kEri~-iD~e~~~~~y 84 (153)
+..+..++||+++||+++-|- ..+.+|.+..=-++...+.|. .+|..-.+.+ ..+|......-++. +|+. +.+.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~p-e~~~~W~~p~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~-~~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEP-ELLKQWFCPKPWTTEVAELDL-RPGGAFRTVMRGPDGEEFPNPGCFLEVVPG-ERLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCH-HHHhccCCCCCccceEEEEEe-ecCcEEEEEEECCCCCEecceEEEEEEeCC-CEEEE
Confidence 456788999999999999987 677888763201233334442 3444444444 33444333455677 7654 44555
Q ss_pred E--EEec-ccc-cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH--------HHHHHHHHHHHHhhhh
Q 031775 85 I--GLEG-DVF-KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY--------VDFMVSITKDVADHIT 151 (153)
Q Consensus 85 ~--vieG-d~~-~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~--------~~~~~~~~k~ve~yll 151 (153)
+ ..++ +.. .+. -..++.++|.++| |.++.+..+. .++.. .+.-..++..|++||-
T Consensus 79 t~~~~~~~~~~~~~~--~~v~~~~~~~~~g---T~Ltl~~~~~-------~~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPF--MTAIITFEDEGGG---TRYTARARHW-------TEADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCc--EEEEEEEEecCCc---EEEEEEEEeC-------CHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 5 3222 111 121 3567888886544 8888764431 12111 2445667778888874
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.53 E-value=0.006 Score=44.57 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=68.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCce-------eeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCC
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANI-------KAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDA 78 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i-------~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e 78 (153)
++.++.|+||+++||+++.| .+.+|.+..- ..|++ | -.+|-.-.+ ...+|.. ...=++. +++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~---d-~~~GG~~~~-~~~~g~~-~~~g~v~~v~p- 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVF---E-PRAGGRWYE-IGEDGTE-CEWGTVLAWEP- 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEE---c-ccCCcEEEE-ecCCCcE-eceEEEEEEcC-
Confidence 57889999999999999987 3667765311 22222 1 122222222 1223432 2344566 755
Q ss_pred CcEEEEEEE-eccc--ccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCC-CC---hhhHHHHHHHHHHHHHhhh
Q 031775 79 NMSVTLIGL-EGDV--FKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANV-PD---PVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 79 ~~~~~y~vi-eGd~--~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~-~~---p~~~~~~~~~~~k~ve~yl 150 (153)
++.+.|+-. ..+. .... .-..++.++|.+++| |.++.+-.+.....+. .. .......-..++..|++||
T Consensus 72 ~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~g--T~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l 147 (149)
T cd08891 72 PSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEG--TRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA 147 (149)
T ss_pred CCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCC--eEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence 455556543 2111 1111 235788899976344 8888777664322100 01 1122334455677777776
No 39
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0055 Score=45.37 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=73.3
Q ss_pred cceEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcE
Q 031775 3 LVGKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMS 81 (153)
Q Consensus 3 ~~~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~ 81 (153)
....++.+..|++|+++||+++.|. .++++|+...=...++.-| .+....+... +++.....-++. +.+ ++.
T Consensus 6 ~~~~~~~er~i~aP~e~Vf~A~Tdp-e~l~~W~~~~~~~~d~r~g----g~~~~~~~~~-~g~~~~~~~~~~~v~p-~~r 78 (149)
T COG3832 6 EDRTLEIERLIDAPPEKVFEALTDP-ELLARWFMPGGAEFDARTG----GGERVRFRGP-DGPVHSFEGEYLEVVP-PER 78 (149)
T ss_pred CCceEEEEEeecCCHHHHHHHhcCH-HHHHhhcCCCCCccceecC----CceEEeeecC-CCCeeecceEEEEEcC-CcE
Confidence 4678899999999999999999988 7899998721001111111 1223333333 232234455555 643 444
Q ss_pred EEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH--HHHHHHHHHHHHhhhh
Q 031775 82 VTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY--VDFMVSITKDVADHIT 151 (153)
Q Consensus 82 ~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~--~~~~~~~~k~ve~yll 151 (153)
|.|+-.-.+-..+...=..++++++..+|+ ++...-...+....+ ....... .+.-..++..++++|-
T Consensus 79 Iv~tw~~~~~~~~~~~~~v~~~l~~~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDGEPFLKSLVTITLTPEDDGG-TTTLVRTSGGGFLED-EDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCCCcccCceEEEEEEEecCCC-cEEEEEEeeccccch-hHHHhCcchhhhHHHHHHHHHHhhc
Confidence 555544443221222334566677766663 244433333332111 1111111 4455667777777663
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.42 E-value=0.0044 Score=43.09 Aligned_cols=121 Identities=8% Similarity=0.024 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEEEEecccc
Q 031775 14 EVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLIGLEGDVF 92 (153)
Q Consensus 14 ~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~vieGd~~ 92 (153)
+||+++||+++.+. ..+.+|.+ +...+.+ ..+|..-.+ ...++......=++. +++. +.+.|+.--++..
T Consensus 1 ~ap~e~Vw~a~t~~-~~~~~W~~-----~~~~~~~-~~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~-~~i~~~~~~~~~~ 71 (124)
T PF08327_consen 1 DAPPERVWEALTDP-EGLAQWFT-----TSEAEMD-FRPGGSFRF-MDPDGGEFGFDGTVLEVEPP-ERIVFTWRMPDDP 71 (124)
T ss_dssp SSSHHHHHHHHHSH-HHHHHHSE-----EEEEEEE-CSTTEEEEE-EETTSEEEEEEEEEEEEETT-TEEEEEEEEETSS
T ss_pred CcCHHHHHHHHCCH-hHHhhccC-----CCcceee-eecCCEEEE-EecCCCCceeeEEEEEEeCC-EEEEEEEEccCCC
Confidence 68999999999987 67888822 2223344 245554444 235565444554577 7554 4477774433332
Q ss_pred cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhh-HHHHHHHHHHHHHhhh
Q 031775 93 KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVA-YVDFMVSITKDVADHI 150 (153)
Q Consensus 93 ~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~-~~~~~~~~~k~ve~yl 150 (153)
. -.....++.+++ .+++ |.++.+. ....... .... ....-..++..|.+||
T Consensus 72 ~-~~~~~v~~~~~~-~~~~--T~l~~~~--~~~~~~~-~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 D-GPESRVTFEFEE-EGGG--TRLTLTH--SGFPDDD-EEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S-CEEEEEEEEEEE-ETTE--EEEEEEE--EEEHSHH-HHHHCHHHHHHHHHHHHHHHH
T ss_pred C-CCceEEEEEEEE-cCCc--EEEEEEE--EcCCccH-HHHHHHHHHHHHHHHHHHHHh
Confidence 1 234567888888 4443 7776665 2111100 0111 3344456666676665
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.37 E-value=0.0055 Score=44.21 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=59.3
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLI 85 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~ 85 (153)
+..++.++||+++||+++.+. ..+.+|.+. -.+.++ .+|..-.|.|...+. ...=++. ++ ..+.+.|+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p-~~l~~W~~~-~~~~~~------~~Gg~~~~~~~~~~~--~~~g~~~~~~-p~~~l~~~ 70 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDP-EITTKFWFT-GSSGRL------EEGKTVTWDWEMYGA--SVPVNVLEIE-PNKRIVIE 70 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCH-HHhcccccc-CCCccc------cCCCEEEEEEEccCC--ceEEEEEEEc-CCCEEEEE
Confidence 467899999999999999987 677886543 223333 244444566654443 2233455 64 45667776
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEE
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIA 121 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ 121 (153)
--.++ .. -..++++.+.++|| |.+..+-.
T Consensus 71 w~~~~---~~--s~v~~~l~~~~~gg--T~ltl~~~ 99 (136)
T cd08901 71 WGDPG---EP--TTVEWTFEELDDGR--TFVTITES 99 (136)
T ss_pred ecCCC---CC--EEEEEEEEECCCCc--EEEEEEEC
Confidence 43321 22 23678888876454 87766643
No 42
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.16 E-value=0.032 Score=39.71 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=55.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEE
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLI 85 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~ 85 (153)
++.+..++||+++||+++-+. ..+.+|... ..+.+...| |..+ +.. | .+.-++. +++ ++.+.|+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~-e~l~~W~~~-~~~~d~~~G-----G~~~---~~~-g---~~~g~~~~i~p-~~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDE-ERVQAFTRS-PAKVDAKVG-----GKFS---LFG-G---NITGEFVELVP-GKKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCH-HHHHhhcCC-CceecCCCC-----CEEE---EeC-C---ceEEEEEEEcC-CCEEEEE
Confidence 567788999999999999987 678888764 334443333 2332 332 3 1333455 653 4455554
Q ss_pred EEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEE
Q 031775 86 GLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYE 123 (153)
Q Consensus 86 vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye 123 (153)
---.+.... ..-..++.+++.+ || |.++.+-...
T Consensus 67 w~~~~~~~~-~~s~v~~~l~~~~-~g--T~ltl~~~g~ 100 (126)
T cd08892 67 WRFKSWPEG-HYSTVTLTFTEKD-DE--TELKLTQTGV 100 (126)
T ss_pred EEcCCCCCC-CcEEEEEEEEECC-CC--EEEEEEEECC
Confidence 432222111 1234778888864 33 7766665443
No 43
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.12 E-value=0.098 Score=41.96 Aligned_cols=143 Identities=6% Similarity=0.008 Sum_probs=91.9
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEec---CCceeeEEEEEE-E--eCCC
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV---EGRTETFKEKVE-H--DDAN 79 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~---~g~~~~~kEri~-i--D~e~ 79 (153)
.+..+..+++|++++|+++.|. ..-++|.+. ..++++++--+... .+-.+.+.. -.+...+-.+-- - +..+
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~-~~R~~WD~~-~~e~evI~~id~d~-~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDP-FKRPEWDPH-GRSCEEVKRVGEDD-GIYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCc-chhhhhhhc-ccEEEEEEEeCCCc-EEEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 3567778899999999999999 788999998 99999998321122 233344332 122234433332 2 2222
Q ss_pred -cEEEEEEEecc-c--cc---ceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCC--CCChhhHHHHHHHHHHHHHhhh
Q 031775 80 -MSVTLIGLEGD-V--FK---HFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNAN--VPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 80 -~~~~y~vieGd-~--~~---~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~--~~~p~~~~~~~~~~~k~ve~yl 150 (153)
..+..+-+.-+ + -. ....+.+-+.+.|.++|+ |.+......++.--. .-.-..+-......|+..+.||
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~--t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTC--TEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCc--EEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence 44555555522 1 12 256888999999988876 888888776655331 1123444566778899999999
Q ss_pred hcC
Q 031775 151 TKG 153 (153)
Q Consensus 151 l~~ 153 (153)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 875
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.52 E-value=0.034 Score=40.19 Aligned_cols=119 Identities=6% Similarity=-0.020 Sum_probs=60.2
Q ss_pred EcCCHHHHHHHHhcccCCcccc-CCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCC-cEEEEEEEec
Q 031775 13 IEVPAEKFYHIWKKQSYHVPTA-SPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDAN-MSVTLIGLEG 89 (153)
Q Consensus 13 i~~~a~k~w~~~~d~~~~lpk~-~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~-~~~~y~vieG 89 (153)
++||+++||+++-|- .++.+| .+. ...++. .+|.. |.+..+ .+.-++. +|+.. -.++++.-+.
T Consensus 1 f~ap~e~Vw~A~Tdp-~~l~~w~~~~-~~~~d~------~~GG~--f~~~~~----~~~G~~~ev~pp~rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFLDA-YTLTRLSLGS-PAEMDA------KVGGK--FSLFNG----SVEGEFTELEKPKKIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHcCH-HHHHHHhcCC-CccccC------CcCCE--EEEecC----ceEEEEEEEcCCCEEEEEEecCCC
Confidence 379999999999987 677787 432 222232 23332 222212 1233555 65543 3334443221
Q ss_pred ccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCC---CCChhhHHHHHHH-HHHHHHhhh
Q 031775 90 DVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNAN---VPDPVAYVDFMVS-ITKDVADHI 150 (153)
Q Consensus 90 d~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~---~~~p~~~~~~~~~-~~k~ve~yl 150 (153)
+ ...+ -..++.+++.++|+ |.++.+-.--+..+. ....+...+.-.. ++..|++||
T Consensus 67 ~-~~~~--s~vt~~~~~~~~g~--T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 67 E-EDVY--SKVTIEFRAVEEDH--TELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred C-CCCc--eEEEEEEEeCCCCc--EEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 1 1122 24788889876555 877777652221111 0112333333344 577777776
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.37 E-value=0.1 Score=38.99 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=54.0
Q ss_pred CHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEEEecccccce
Q 031775 16 PAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVFKHF 95 (153)
Q Consensus 16 ~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~vieGd~~~~~ 95 (153)
+.+++|+.+......-..++|. |.+|++++-. +..-.|.++| ++ ..++|++.+.+. ..+.|... .-
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~--~~~~~R~v~f--g~--~~v~E~v~~~~~-~~V~f~~~------~G 84 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPG-IDSCEVLSES--DTVLTREVTF--GG--ATVRERVTLYPP-ERVDFAQH------DG 84 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT---EEEEEEE---SSEEEEEEEE--TT--EEEEEEEEEETT-TEEEESSS------BE
T ss_pred CHHHHHHHHHHHHhChhhCccc-cCeEEEEecC--CCeEEEEEEE--CC--cEEEEEEEEeCC-cEEEEEcC------CC
Confidence 3568999996432344567786 9999999865 4567899999 33 389999995443 47777211 22
Q ss_pred EEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 96 KSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 96 ~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
.+...+|. +| .+| -.-.+..|+..-.
T Consensus 85 s~lt~~I~-e~-~~g----~L~ltf~ye~~~p 110 (149)
T PF08982_consen 85 SSLTNIIS-EP-EPG----DLFLTFTYEWRLP 110 (149)
T ss_dssp EEEEEEEE-EE-ETT----EEEEEEEEEEE--
T ss_pred CEEEEEEe-cC-CCC----cEEEEEEEEeccc
Confidence 34555554 23 222 3567777776633
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.14 E-value=0.38 Score=37.68 Aligned_cols=119 Identities=11% Similarity=0.015 Sum_probs=77.3
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEe-c--C--CceeeEEEEEE-EeCCCc
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS-V--E--GRTETFKEKVE-HDDANM 80 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~-~--~--g~~~~~kEri~-iD~e~~ 80 (153)
+-.+.++++|++++|+++.|. ..-++|.+. ++++++++--.... .|-++.+. + . .+...+..+.. .+..+.
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~-~~r~~Wd~~-~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDP-RTRFLYDTM-IKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCc-chhhhhHHh-hhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 445778899999999999999 788999997 99999998431122 34444443 2 1 22345555544 334333
Q ss_pred EEEEEEEec-cc--cc-c---eEEEEEEEEEeec---CCCCCeeEEEEEEEEEecCCCCC
Q 031775 81 SVTLIGLEG-DV--FK-H---FKSWLPVYKVSPK---GDGSAGSIATCSIAYEKLNANVP 130 (153)
Q Consensus 81 ~~~y~vieG-d~--~~-~---~~s~~~~~~v~~~---~~gg~~s~v~wt~~ye~~~~~~~ 130 (153)
.+.-+-++- .+ .. . .....+-+.++|. ++|. |.+...+.-++.+++.|
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~--t~vty~~q~DPggg~iP 181 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQY--TRVIYIAQVALCGPDVP 181 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCc--EEEEEEEEECCCCCCCC
Confidence 444433443 21 11 2 3566788999997 6665 99999999998866554
No 47
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.99 E-value=0.43 Score=35.42 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=61.3
Q ss_pred CHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEEEe-cccccc
Q 031775 16 PAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLE-GDVFKH 94 (153)
Q Consensus 16 ~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~vie-Gd~~~~ 94 (153)
+.+++|+.+.-....-..+.|. +.+|++++.+ + .-..|.++|+. ..++|++.+++ ...+.|.+-. |+
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~-i~~c~Vl~e~-~-~~l~Rel~f~~----~~v~e~vt~~~-~~~v~f~~~~~g~---- 85 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPG-LDRCEVLSES-G-TVLERELTFGP----AKIRETVTLEP-PSRVHFLQADAGG---- 85 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccc-cceEEEEecC-C-CEEEEEEEECC----ceEEEEEEecC-CcEEEEEecCCCC----
Confidence 4679999986321333456676 9999999976 2 24569999975 37899999543 3677887665 32
Q ss_pred eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCC
Q 031775 95 FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVP 130 (153)
Q Consensus 95 ~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~ 130 (153)
+. ++.+....+| . .-.+..|+....+..
T Consensus 86 --~l--~~~iee~~~g---~-L~lrf~ye~~~p~~~ 113 (141)
T cd08863 86 --TL--TNTIEEPEDG---A-LYLRFVYETTLPEVA 113 (141)
T ss_pred --eE--EEEeccCCCC---c-EEEEEEEEecCCCcC
Confidence 22 3333333333 2 577888887766543
No 48
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.50 E-value=1 Score=36.19 Aligned_cols=141 Identities=6% Similarity=-0.029 Sum_probs=82.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecC----CceeeEEEEEE-EeCCCc
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVE----GRTETFKEKVE-HDDANM 80 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~----g~~~~~kEri~-iD~e~~ 80 (153)
.+..+..+++|++++|+++.|. ...|+|.+. +.++++++--...- .+.+++-.+- .+...+-.+-. -+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~-~~r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDL-RRRPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhCh-hhhhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 3456678899999999999998 789999999 88999987421122 2555443332 11234433322 333332
Q ss_pred ---EEEEEEEec-ccc--cc---eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChh----hHHHHHHHHHHHHH
Q 031775 81 ---SVTLIGLEG-DVF--KH---FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPV----AYVDFMVSITKDVA 147 (153)
Q Consensus 81 ---~~~y~vieG-d~~--~~---~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~----~~~~~~~~~~k~ve 147 (153)
.+..+...- +.. .. ...+.+-+.+.|.++|. |.+.+...-.+ + ..|... ....-....+.+..
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~--t~vtY~~~~dP-G-~LP~~~~N~~~~~~p~~~~~~~~~ 234 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQL--TKVSYYNQATP-G-VLPYISTDIAGLSSEFYSTFSACS 234 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCc--EEEEEEEEeCC-c-cccHHHhhhhhhccchhHHHHHHH
Confidence 233333332 321 22 35678889999988776 88877554443 2 332210 11123355677777
Q ss_pred hhhhcC
Q 031775 148 DHITKG 153 (153)
Q Consensus 148 ~yll~~ 153 (153)
.||++|
T Consensus 235 ~~~~~~ 240 (240)
T cd08913 235 QFLLDN 240 (240)
T ss_pred HHhhcC
Confidence 777764
No 49
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.36 E-value=3.5 Score=33.15 Aligned_cols=139 Identities=8% Similarity=0.036 Sum_probs=83.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEec--CCc-eeeEEEEEE-EeC-CC-
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV--EGR-TETFKEKVE-HDD-AN- 79 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~--~g~-~~~~kEri~-iD~-e~- 79 (153)
.+..+..+++|++++++++.|. ..-|+|.+. ..++++++--...- -|..++-.+ ..+ ...+..+-- .+. .+
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~-~~r~~Wd~~-~~e~~vI~qld~~~-~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDF-TKRPLWDPH-FLSCEVIDWVSEDD-QIYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhCh-hhhchhHHh-hceEEEEEEeCCCc-CEEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 4567778899999999999999 789999999 88889887431112 266655322 111 233333222 122 22
Q ss_pred -cEEEEEEEecc-c--ccc---eEE-EEEEEEEeecCCCCCeeEEEEEEEEEecCCCCC----ChhhHHHHHHHHHHHHH
Q 031775 80 -MSVTLIGLEGD-V--FKH---FKS-WLPVYKVSPKGDGSAGSIATCSIAYEKLNANVP----DPVAYVDFMVSITKDVA 147 (153)
Q Consensus 80 -~~~~y~vieGd-~--~~~---~~s-~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~----~p~~~~~~~~~~~k~ve 147 (153)
..+.-.-+.-. + -.. ..+ +.+- .+.|.++++ |.+.....-++ +..| .-...-......++...
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~--~~VtY~~~~dP--g~lp~~~~n~~~~~~~~~~~~~~~~ 230 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNS--CTVSYFNQISA--SILPYFAGNLGGWSKSIEETAASCI 230 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCc--EEEEEEEEcCC--ccchheEEecchhhhHHHHHHHHHH
Confidence 33333333331 1 122 345 4445 889988776 98888887776 2222 12333445566777788
Q ss_pred hhhhc
Q 031775 148 DHITK 152 (153)
Q Consensus 148 ~yll~ 152 (153)
.||..
T Consensus 231 ~~~~~ 235 (236)
T cd08914 231 QFLEN 235 (236)
T ss_pred HHHhc
Confidence 88765
No 50
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=93.00 E-value=2.7 Score=30.89 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=72.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCc---eeeEEEEEE-EeC-CCc
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGR---TETFKEKVE-HDD-ANM 80 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~---~~~~kEri~-iD~-e~~ 80 (153)
.+-.+.++++|++++++++.|. ...++|-|. +.++++++-. ...-.+....+....+ ...+--+.. .++ ...
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~-~~~~~w~~~-~~~~~vl~~~-~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDI-DLRKKWDKN-FEEFEVIEEI-DEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCC-chhhchhhc-ceEEEEEEEe-CCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 3556778899999999999986 677999998 8899999864 2224555555543332 123322223 333 222
Q ss_pred EEEEEEEecc-cc--cce---EEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 81 SVTLIGLEGD-VF--KHF---KSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 81 ~~~y~vieGd-~~--~~~---~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
.+...=++.+ .. ..+ ..+.+-+.+.|.++++ |.+.+.+..++.+.
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~--~~vt~~~~~D~~g~ 167 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGK--TKVTYVLQVDPKGS 167 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCC--EEEEEEEeeCCCCC
Confidence 2222223222 11 122 2334567788886665 99999999988865
No 51
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=92.90 E-value=3.6 Score=31.99 Aligned_cols=137 Identities=7% Similarity=0.109 Sum_probs=79.6
Q ss_pred EEEEEEEcCCHHHHHHHHh-cccCCccccCCCceeeEEEEeCccCCCCc-E-EEEEEec-CC---ceeeEEEEEE-EeCC
Q 031775 7 IEKQIEIEVPAEKFYHIWK-KQSYHVPTASPANIKAVDVHEGEWHHHGS-V-KLWTYSV-EG---RTETFKEKVE-HDDA 78 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~-d~~~~lpk~~P~~i~sve~~eGd~g~~Gs-v-r~~~~~~-~g---~~~~~kEri~-iD~e 78 (153)
+..+..+++|++++++.+. |. ...|+|.+. +.++++++-- +..+ | ..++..- ++ +...+..+.- -++.
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~-e~~~~W~~~-~~~~~vl~~i--d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~ 126 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRM-EQMGEWNPN-VKEVKILQRI--GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS 126 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhch-hhhceeccc-chHHHHHhhc--CCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence 5577888999999996665 66 788999999 8888888743 1122 2 2221111 11 1234444444 4444
Q ss_pred CcEEEEEEEecccc---cc---eEEEEEEEEEeecCC--CCCeeEEEEEEEEEecCCCCCCh--hhH-HHHHHHHHHHHH
Q 031775 79 NMSVTLIGLEGDVF---KH---FKSWLPVYKVSPKGD--GSAGSIATCSIAYEKLNANVPDP--VAY-VDFMVSITKDVA 147 (153)
Q Consensus 79 ~~~~~y~vieGd~~---~~---~~s~~~~~~v~~~~~--gg~~s~v~wt~~ye~~~~~~~~p--~~~-~~~~~~~~k~ve 147 (153)
+..+.....+-+-+ .. .....+-+.+.|.++ +. |.+.|.+..++++. .|.. ... .+.....++.+.
T Consensus 127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~--t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSK--TKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCc--eEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHH
Confidence 43332222333321 22 345667888999765 54 99999999988877 2221 111 233455666666
Q ss_pred hhh
Q 031775 148 DHI 150 (153)
Q Consensus 148 ~yl 150 (153)
+++
T Consensus 204 ~~~ 206 (209)
T cd08905 204 QRM 206 (209)
T ss_pred HHH
Confidence 554
No 52
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=92.61 E-value=3.8 Score=31.55 Aligned_cols=141 Identities=10% Similarity=0.065 Sum_probs=80.5
Q ss_pred EEEEEEEcCCHHHHHHHHh-cccCCccccCCCceeeEEEEeCccCCCCcEEEEEEe-cC-Cc---eeeEEEEEE-EeCCC
Q 031775 7 IEKQIEIEVPAEKFYHIWK-KQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS-VE-GR---TETFKEKVE-HDDAN 79 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~-d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~-~~-g~---~~~~kEri~-iD~e~ 79 (153)
+..+..+++|++++|..+. |. ...++|.+. +..+++++--.+ --.|-...+. .. .+ ...+-.|.- .++..
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~-~~~~~Wd~~-~~~~~~i~~~d~-~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNV-ESLPSWNPT-VLECKIIQVIDD-NTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCc-cccceecCc-ccceEEEEEecC-CcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence 5567788999999997665 66 789999999 888888775311 1122222222 11 11 234433444 44433
Q ss_pred cEEEEEEEecc-c--ccc---eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCC--hhh-HHHHHHHHHHHHHhhh
Q 031775 80 MSVTLIGLEGD-V--FKH---FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPD--PVA-YVDFMVSITKDVADHI 150 (153)
Q Consensus 80 ~~~~y~vieGd-~--~~~---~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~--p~~-~~~~~~~~~k~ve~yl 150 (153)
..+...-++-+ . ..+ ...+.+-+.++|.+++..+|.+.|.+...+++.- |. -.. .......+++.+..++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHH
Confidence 44444444422 1 123 2455677888987653123899999988888662 22 111 1344456677777665
Q ss_pred h
Q 031775 151 T 151 (153)
Q Consensus 151 l 151 (153)
-
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 3
No 53
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=89.12 E-value=8.9 Score=29.68 Aligned_cols=110 Identities=9% Similarity=0.091 Sum_probs=66.6
Q ss_pred EEEEEEE-cCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCc-EEEEEEecC---CceeeEEEEEE-EeCCCc
Q 031775 7 IEKQIEI-EVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGS-VKLWTYSVE---GRTETFKEKVE-HDDANM 80 (153)
Q Consensus 7 ~~~ei~i-~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gs-vr~~~~~~~---g~~~~~kEri~-iD~e~~ 80 (153)
+-++..+ .+|++.|++++.|. ..-++|.+. +.+.++++-+ ...++ |-.+....- .+..++-.|.- .|+++.
T Consensus 47 ~k~~~~~~d~s~~~~~~~~~D~-~~r~~Wd~~-~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 47 YKVYGSFDDVTARDFLNVQLDL-EYRKKWDAT-AVELEVVDED-PETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHhCH-HHHHHHHhh-heeEEEEEcc-CCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 4454545 89999999999998 788999999 7788988864 22232 233333222 11246656665 776654
Q ss_pred E--EEEEEEec-cc--cc---ceEEEEEEEEEeecC---CCCCeeEEEEEEE
Q 031775 81 S--VTLIGLEG-DV--FK---HFKSWLPVYKVSPKG---DGSAGSIATCSIA 121 (153)
Q Consensus 81 ~--~~y~vieG-d~--~~---~~~s~~~~~~v~~~~---~gg~~s~v~wt~~ 121 (153)
. +...-++- .. .. ...+|.+.+.+.|.+ ++| |.+.++..
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~--~~~~~~~~ 173 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPG--FEFVLTYF 173 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCC--eEEEEEEE
Confidence 4 22222332 11 11 356788899999873 333 76664433
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=88.40 E-value=10 Score=29.35 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=76.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEec---CCceeeEE--EEEE-EeCCC
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV---EGRTETFK--EKVE-HDDAN 79 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~---~g~~~~~k--Eri~-iD~e~ 79 (153)
.+-.+-.+++|++++.+++.|. .+.|+|.|. ....+.++-. +..-.|-.+.+.. -+....+- ..++ ++ ++
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~-~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~~ 122 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQL-GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-EN 122 (215)
T ss_pred EEEEEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeec-CCceEEEEEEEeCceEecceEEEEEEEEEeeec-cC
Confidence 4566778889999999999998 899999999 4555555432 1112233333211 11112221 2233 32 34
Q ss_pred cEEEE--EEEecc----------cc--c----ceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCChhhH-----H
Q 031775 80 MSVTL--IGLEGD----------VF--K----HFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPDPVAY-----V 136 (153)
Q Consensus 80 ~~~~y--~vieGd----------~~--~----~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~-----~ 136 (153)
..+.. +-+..+ +. . ....+.+-+.++|.+++. |.+++.+...+.+.-.| ..+ +
T Consensus 123 ~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~--t~v~~~~~~DP~g~~IP--~~liN~~~k 198 (215)
T cd08877 123 GQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTK--CYLRFVANVDPKMSLVP--KSLLNFVAR 198 (215)
T ss_pred CCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCC--eEEEEEEEcCCCcccCC--HHHHHHHHH
Confidence 43322 222210 11 1 235677888999988886 98888887766655233 222 4
Q ss_pred HHHHHHHHHHHh
Q 031775 137 DFMVSITKDVAD 148 (153)
Q Consensus 137 ~~~~~~~k~ve~ 148 (153)
+.+-.+++.+.+
T Consensus 199 ~~~~~~~~~l~k 210 (215)
T cd08877 199 KFAGLLFEKIQK 210 (215)
T ss_pred HHHHHHHHHHHH
Confidence 455566666654
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=88.27 E-value=10 Score=29.46 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=74.0
Q ss_pred EEEEEEEEcCCHHHHHH-HHhcccCCccccCCCceeeEEEEeCccCCCCc-EE-EEEEec-CCc---eeeEEEEEE-EeC
Q 031775 6 KIEKQIEIEVPAEKFYH-IWKKQSYHVPTASPANIKAVDVHEGEWHHHGS-VK-LWTYSV-EGR---TETFKEKVE-HDD 77 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~-~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gs-vr-~~~~~~-~g~---~~~~kEri~-iD~ 77 (153)
.+..+..+++|++++|. ++.|. ...|+|.+. +.++++++-- +..+ |- .++..- +++ ...+-.|-- -+.
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~-~~~~~W~~~-~~~~~vi~~~--~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~ 125 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQP-EKMVLWNKT-VSACQVLQRV--DDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR 125 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhCh-hhccccCcc-chhhhheeec--cCCcEEEEEEccccccCCCCCCceEEEEEEEecC
Confidence 35677888999999985 66788 789999999 8899988743 1112 11 222211 112 234444444 343
Q ss_pred CCc-EEEEEEEecccc---cceEE----EEEEEEEee-cCCCCCeeEEEEEEEEEecCCCCCCh--h-hHHHHHHHHHHH
Q 031775 78 ANM-SVTLIGLEGDVF---KHFKS----WLPVYKVSP-KGDGSAGSIATCSIAYEKLNANVPDP--V-AYVDFMVSITKD 145 (153)
Q Consensus 78 e~~-~~~y~vieGd~~---~~~~s----~~~~~~v~~-~~~gg~~s~v~wt~~ye~~~~~~~~p--~-~~~~~~~~~~k~ 145 (153)
.+. .+..++ .-+.. ..|.+ ..+-+-..+ .+.++ |.+.|.+.-++++. .|.. . .+.+....+++.
T Consensus 126 ~~~i~~~~sv-~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~--t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08906 126 DRYVSAGIST-THSHKPPLSKYVRGENGPGGFVVLKSASNPSV--CTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASH 201 (209)
T ss_pred CcEEEEEEEE-ecCCCCCCCCeEEEeeeccEEEEEECCCCCCc--eEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 332 222222 22321 23332 223333333 34444 99999999998885 2221 1 112334455555
Q ss_pred HHhhh
Q 031775 146 VADHI 150 (153)
Q Consensus 146 ve~yl 150 (153)
+.+++
T Consensus 202 LR~~~ 206 (209)
T cd08906 202 LRQRI 206 (209)
T ss_pred HHHHH
Confidence 55554
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=87.88 E-value=11 Score=29.22 Aligned_cols=117 Identities=10% Similarity=-0.010 Sum_probs=66.6
Q ss_pred EEEEEEEcCCHHHHHHHHhcccC-CccccCCCceeeEEEEeCccCCCCcEEEEEEecC-----CceeeEEEEE-E-EeCC
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSY-HVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVE-----GRTETFKEKV-E-HDDA 78 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~-~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~-----g~~~~~kEri-~-iD~e 78 (153)
+..+..+.++++++|+.+.|..+ .-++|.+. +.+++++|--.... .|-++..... .+...+-.+. . .++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCCc
Confidence 56778889999999999987633 22899999 88989888531111 1222222211 1123333222 3 4443
Q ss_pred CcEEEEEEEecccc---cceEE-----EEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 79 NMSVTLIGLEGDVF---KHFKS-----WLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 79 ~~~~~y~vieGd~~---~~~~s-----~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
...+.+...+-+-. ..|-+ +..-++..|.++++ |.+.|-+...+++.
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~--t~v~~~~~~DpkG~ 180 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK--TQLVSFFQTDLSGY 180 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc--eEEEEEEEeccCCC
Confidence 34444444554321 23322 23345555544454 99999999888765
No 57
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=87.65 E-value=11 Score=28.94 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=70.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEec---CCceeeEEEEEE-EeCCC--c
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSV---EGRTETFKEKVE-HDDAN--M 80 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~---~g~~~~~kEri~-iD~e~--~ 80 (153)
+-.+.+++++++++++.+.|. -++|.+. +.++++++-- +.-=.|-+..+.. -.+...+-.|.- .+.++ .
T Consensus 46 ~K~~~~v~a~~~~v~~~l~d~---r~~Wd~~-~~~~~vie~i-d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 46 WRASTEVEAPPEEVLQRILRE---RHLWDDD-LLQWKVVETL-DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEeCCCHHHHHHHHHHH---Hhccchh-hheEEEEEEe-cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 467888899999999988765 3899999 8888888743 1111223323221 112245555444 44443 3
Q ss_pred EEEEEEEec--ccccc---eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 81 SVTLIGLEG--DVFKH---FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 81 ~~~y~vieG--d~~~~---~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
.+..+-++- .+..+ ...+.+-+-++|.++|+ |.+.+.+..++.+.
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~--t~vty~~~~Dp~G~ 170 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGK--SRVTHICRVDLRGR 170 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCC--eEEEEEEEECCCCC
Confidence 334433431 11112 35567788899987776 99999999998877
No 58
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=87.65 E-value=9.4 Score=28.19 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCc-cCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEE
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGE-WHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTL 84 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd-~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y 84 (153)
+++.++..+-+.+.+-.+++|-...||+++|. +++++ .+|+ ..+-|. | ++..-.++=++-+-..+=+|.|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~sF~~~g~-----~--~~~~~~~~G~vy~s~~~ItYvf 72 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVK-VEENSFRAEGK-----F--GGFPFEMKGNVYVSSNEITYVF 72 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STTEEEEEEE-----E--TTEEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCCc-eEEEE-ecCCEEEEEEE-----E--eeEEEEEEEEEEEccceEEEEE
Confidence 46788888999999999999987899999999 99999 4554 211111 1 2222233334445555566666
Q ss_pred EEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEE
Q 031775 85 IGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYE 123 (153)
Q Consensus 85 ~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye 123 (153)
.+..|... ..=..++++.+ ..++..++|+
T Consensus 73 ~~~~g~~~---g~GkL~i~~~~-------~~i~l~~eye 101 (136)
T PF11485_consen 73 NLAGGGPN---GNGKLTIQLEN-------GKIKLIFEYE 101 (136)
T ss_dssp E----ETT---EEEEEEEEEET-------TEEEEEEEES
T ss_pred EeeccCCC---CcEEEEEEecC-------CEEEEEEEcc
Confidence 66665221 12223344322 2567777775
No 59
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=85.81 E-value=12 Score=27.75 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=71.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEE-ecCCce-eeEEEEEEE--eCCCc
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTY-SVEGRT-ETFKEKVEH--DDANM 80 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~-~~~g~~-~~~kEri~i--D~e~~ 80 (153)
|++.....|++|.+.||+....- ..|..+-|..+ |-.-+|+.-..|+-..... .-+-++ ..++-|++. -+.-.
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrp-d~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~ 78 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRP-DALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS 78 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCc-cHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcc
Confidence 46778889999999999988754 34445555533 3333453222333322222 223322 467777772 34455
Q ss_pred EEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 81 SVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 81 ~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+++=..|.|.+ +--....+-++.+.+++ ++..=++.|+....
T Consensus 79 ~FtDv~i~gPf--p~~~WrHtH~F~~egg~---TvliD~Vsye~p~g 120 (153)
T COG4276 79 RFTDVCITGPF--PALNWRHTHNFVDEGGG---TVLIDSVSYELPAG 120 (153)
T ss_pred eeeeeeecCCc--cceeeEEEeeeecCCCc---EEEEeeEEeeccCc
Confidence 66667777766 22247888899987665 99999999997765
No 60
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=84.23 E-value=17 Score=28.01 Aligned_cols=114 Identities=8% Similarity=0.027 Sum_probs=68.6
Q ss_pred EEEEEEE-cCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCC-cEEEEEEecC---CceeeEEEEEE-Ee-CCC
Q 031775 7 IEKQIEI-EVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHG-SVKLWTYSVE---GRTETFKEKVE-HD-DAN 79 (153)
Q Consensus 7 ~~~ei~i-~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~G-svr~~~~~~~---g~~~~~kEri~-iD-~e~ 79 (153)
+-++.++ .+|++.+++++.|. ..-++|.+. +.+.++++-+. ..| .|-.+....- .+..++-.|.. .| +..
T Consensus 52 ~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~~-~~~~~~le~~~-~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 52 YLVRGVFEDCTPELLRDFYWDD-EYRKKWDET-VIEHETLEEDE-KSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEEEEcCCCHHHHHHHHcCh-hhHhhhhhh-eeeEEEEEecC-CCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence 4555666 67999999999998 778999999 77777776552 112 2333333211 22345555544 55 444
Q ss_pred cEEEEEEEecc-ccc----ceEEEEEEEEEeec--CCCCCeeEEEEEEEEEec
Q 031775 80 MSVTLIGLEGD-VFK----HFKSWLPVYKVSPK--GDGSAGSIATCSIAYEKL 125 (153)
Q Consensus 80 ~~~~y~vieGd-~~~----~~~s~~~~~~v~~~--~~gg~~s~v~wt~~ye~~ 125 (153)
..+....+.-. ... ....|.+.+.+.|. ++++ |.+..+..-.+.
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~--t~~~~~~~~dp~ 179 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQG--SACEVTYFHNPD 179 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCc--eEEEEEEEECCC
Confidence 44444333331 111 36788888999997 4554 777777666553
No 61
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=83.61 E-value=16 Score=27.07 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=59.6
Q ss_pred EEEEEEcCCHHHHHHHHhccc---CCccccCCCceeeEEEEeCccCCCCcEEEEE-Eec-CCc---------eeeEEEEE
Q 031775 8 EKQIEIEVPAEKFYHIWKKQS---YHVPTASPANIKAVDVHEGEWHHHGSVKLWT-YSV-EGR---------TETFKEKV 73 (153)
Q Consensus 8 ~~ei~i~~~a~k~w~~~~d~~---~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~-~~~-~g~---------~~~~kEri 73 (153)
+.++++++|++++|++|.|-. ..+ +.+..-...++..+-++++ -+|..-. ... .-| .-.+++.-
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~-~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARC-AALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHH-HHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 577888999999999998641 122 2222211222223322112 1121111 111 011 11233222
Q ss_pred EE---eCCCcEEEEEEEecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 74 EH---DDANMSVTLIGLEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 74 ~i---D~e~~~~~y~vieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
.+ ++..++.+|++--.+ .--++.+++.+.|.++| |...++.+....-.
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G---~P~~~~G~~~L~~~~~g---t~~~~~g~v~v~VP 130 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPG---APVSISGTMRLRPDGGG---TRLTVEGEVKVKVP 130 (159)
T ss_pred EEecCCCCeEEEEEEEEecC---ceEEEEEEEEEecCCCC---EEEEEEEEEEEEEc
Confidence 24 667777777754322 22588999999995544 99999988886643
No 62
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=82.24 E-value=8.9 Score=30.44 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=65.8
Q ss_pred EcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEEEeCCCcEEEEEEEecccc
Q 031775 13 IEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVEHDDANMSVTLIGLEGDVF 92 (153)
Q Consensus 13 i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~iD~e~~~~~y~vieGd~~ 92 (153)
+..+++.+|+++.+. +...++.|= -++.++++-+ .+-+.+-.+..+--.=.+...-+++.++-.++ .-..-+|.+
T Consensus 76 igysp~~my~vVS~V-~~Y~~FVPw-C~kS~V~~~~-P~~~~kA~LeVGFk~l~E~y~S~Vt~~~p~l~-kt~~~d~rL- 150 (227)
T KOG3177|consen 76 IGYSPSEMYSVVSNV-SEYHEFVPW-CKKSDVTSRR-PSGPLKADLEVGFKPLDERYTSNVTCVKPHLT-KTVCADGRL- 150 (227)
T ss_pred hCCCHHHHHHHHHhH-HHhhccccc-eeccceeecC-CCCCceeeEEecCcccchhheeeeEEecccce-EEeeccccH-
Confidence 578999999999988 678888887 6666666544 12234444433211111344455563333333 223344433
Q ss_pred cceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 93 KHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 93 ~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+......|++.|..+-...|.+...+.||...-
T Consensus 151 --F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~ 183 (227)
T KOG3177|consen 151 --FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSL 183 (227)
T ss_pred --HHhhhheeeeccCCCCCCeEEEEEEEEEEehhH
Confidence 455567899999883212399999999998744
No 63
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=82.00 E-value=22 Score=27.58 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=67.8
Q ss_pred EEEEEEE-cCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCC---ceeeEEEEEE-EeCCCcE
Q 031775 7 IEKQIEI-EVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEG---RTETFKEKVE-HDDANMS 81 (153)
Q Consensus 7 ~~~ei~i-~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g---~~~~~kEri~-iD~e~~~ 81 (153)
+..+..+ .+|++.+++.+.|. ..-++|.|. +..+++++-- +.--.|..+.+..-- ...++-.|.. -++....
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~D~-~~r~~Wd~~-~~e~~~ie~~-d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLHDP-EYRKTWDSN-MIESFDICQL-NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHHCh-hhhhhhhhh-hceeEEEEEc-CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 3345555 68999999999987 778999999 7777777643 122344444443211 1234444444 3332222
Q ss_pred EEEEEEecc-c--ccce---EEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 82 VTLIGLEGD-V--FKHF---KSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 82 ~~y~vieGd-~--~~~~---~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
+..+-+.-+ . ...| ..+.+-+.+.|.++++ |.+.|...-.+.+.
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~--t~vt~~~~~Dp~G~ 175 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKG--CTLTYVTQNDPKGS 175 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCC--EEEEEEEecCCCCC
Confidence 222222222 1 1232 3456677888987765 99999888877765
No 64
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=78.76 E-value=27 Score=26.70 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=76.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcc-cCCccccCCCceeeEEEEeCccCCCCcEEEEEEecC-----CceeeEE-EEEE-EeCC
Q 031775 7 IEKQIEIEVPAEKFYHIWKKQ-SYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVE-----GRTETFK-EKVE-HDDA 78 (153)
Q Consensus 7 ~~~ei~i~~~a~k~w~~~~d~-~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~-----g~~~~~k-Eri~-iD~e 78 (153)
+-.+..++++++++++.+.|. ....++|.+. +.++++++.- +..=.|.+..+... .+..++- +... +++.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~-~~~~~~le~i-d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGLRLKWDKS-LKHYEVLEKI-SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCcccccccccc-ccceEEEEEe-CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 667788899999999999872 2667899988 8899999864 11112222222110 1122322 2223 4443
Q ss_pred CcEEEEEEEecccc---cce---EEEEEEEEEeecC--CCCCeeEEEEEEEEEecCCCCCChhhH-----HHHHHHHHHH
Q 031775 79 NMSVTLIGLEGDVF---KHF---KSWLPVYKVSPKG--DGSAGSIATCSIAYEKLNANVPDPVAY-----VDFMVSITKD 145 (153)
Q Consensus 79 ~~~~~y~vieGd~~---~~~---~s~~~~~~v~~~~--~gg~~s~v~wt~~ye~~~~~~~~p~~~-----~~~~~~~~k~ 145 (153)
...+...-++-+.. ..| ..+.+-+-+.|.+ .++ |.+.|.+...+.+.- |.-+ .+....+++.
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~--t~~~~~~~~DpkG~i---P~~lvn~~~~~~~~~~~~~ 200 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK--SFLVLYVQTDLRGMI---PQSLVESAMPSNLVNFYTD 200 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc--eEEEEEEEeccCCCC---cHHHHHhhhhhhHHHHHHH
Confidence 33334444433311 222 2334445566654 333 999999999988762 2222 2344566677
Q ss_pred HHhhh
Q 031775 146 VADHI 150 (153)
Q Consensus 146 ve~yl 150 (153)
|..|+
T Consensus 201 lr~~~ 205 (206)
T cd08867 201 LVKGV 205 (206)
T ss_pred HHHhc
Confidence 66654
No 65
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=73.53 E-value=36 Score=25.55 Aligned_cols=139 Identities=8% Similarity=0.005 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHH-HHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCC-c---eeeEEEEEE-E-eCC
Q 031775 6 KIEKQIEIEVPAEKFY-HIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEG-R---TETFKEKVE-H-DDA 78 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w-~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g-~---~~~~kEri~-i-D~e 78 (153)
.+..+..+.+++++++ .++.|. ...++|.|. +.++++++-. ..-..|.++....-- + ..++-.|.- . .+.
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~-~~r~~Wd~~-~~~~~~ie~~-~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDL-RYRPEWDKN-VAKAETLEVI-DNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcc-cchhhCchh-cccEEEEEEE-CCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 3456667788888755 555576 788999999 7788887743 112355555443221 2 234433333 3 333
Q ss_pred CcEEEEEEEecc-c--ccc---eEEEEEEEEEeecCCCCCeeEEEEEEEEEecCCCCCC---hhhHHHHHHHHHHHHHhh
Q 031775 79 NMSVTLIGLEGD-V--FKH---FKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNANVPD---PVAYVDFMVSITKDVADH 149 (153)
Q Consensus 79 ~~~~~y~vieGd-~--~~~---~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~---p~~~~~~~~~~~k~ve~y 149 (153)
...+..+-++.+ . ..+ ...+.+-+.+.|.++|. |.+.|...-.+.+. .|. ..-.......+++.+-++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~--t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGP--SKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCC--eEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHH
Confidence 334444344433 1 112 34667888999988886 99999999888876 332 111233444455555444
Q ss_pred h
Q 031775 150 I 150 (153)
Q Consensus 150 l 150 (153)
|
T Consensus 200 ~ 200 (206)
T smart00234 200 L 200 (206)
T ss_pred H
Confidence 3
No 66
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=56.04 E-value=96 Score=24.21 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=70.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEe-----cCCceeeEEEEEE-EeCCC
Q 031775 6 KIEKQIEIEVPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYS-----VEGRTETFKEKVE-HDDAN 79 (153)
Q Consensus 6 k~~~ei~i~~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~-----~~g~~~~~kEri~-iD~e~ 79 (153)
.+..+++++++++++...+-|. -++|.+. +...++++--.. .-..+-|. +-.....+..|.- .|..+
T Consensus 53 ~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~---~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDS---QTEIYQYVQNSMAPHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCC---CceEEEEEccCCCCCCCcEEEEEEEEEEeCCC
Confidence 4667888899999999999755 5899998 666666664211 11222222 1112346666555 55555
Q ss_pred cEEEEEEE--ecc-cc-c--ceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 80 MSVTLIGL--EGD-VF-K--HFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 80 ~~~~y~vi--eGd-~~-~--~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
..+.-... +-+ +. . ....+.+-+-++|.++|+ |.+...+..++.+.
T Consensus 126 g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~--t~vtyi~~~DPgG~ 177 (204)
T cd08908 126 GACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGK--SKLTYMCRIDLRGH 177 (204)
T ss_pred CeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCc--EEEEEEEEeCCCCC
Confidence 55433322 212 11 1 245678888999998886 99999888888766
No 67
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=51.48 E-value=1.2e+02 Score=24.02 Aligned_cols=138 Identities=7% Similarity=-0.033 Sum_probs=75.6
Q ss_pred EEEEEEEc-CCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCc-EEEEEEecC---CceeeEEEEE-E-EeCCC
Q 031775 7 IEKQIEIE-VPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGS-VKLWTYSVE---GRTETFKEKV-E-HDDAN 79 (153)
Q Consensus 7 ~~~ei~i~-~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gs-vr~~~~~~~---g~~~~~kEri-~-iD~e~ 79 (153)
+.++..+. ++++.+++.+.|. ..-++|... +.+.+++|-. ..++ |-...+..- .+...+-.+- . .++..
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~D~-~~r~~Wd~~-~~~~~vie~l--~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFFDP-DVRMDWETT-LENFHVVETL--SQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred EEEEEEECCCCHHHHHHHHhCh-hhHHHHHhh-hheeEEEEec--CCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 56667777 9999999999998 778899998 8888887743 1122 233222211 1122322222 2 33321
Q ss_pred --------cEEEEEEEecccc--cceEEEEEE---------------EEEeecCCCCCeeEEEEEEEEEecCCCCCCh--
Q 031775 80 --------MSVTLIGLEGDVF--KHFKSWLPV---------------YKVSPKGDGSAGSIATCSIAYEKLNANVPDP-- 132 (153)
Q Consensus 80 --------~~~~y~vieGd~~--~~~~s~~~~---------------~~v~~~~~gg~~s~v~wt~~ye~~~~~~~~p-- 132 (153)
-.+..++.=-++. .+|-+...+ +.++| ++++ |.+.+...-++.+.- |..
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~--~~ity~~~~dPgG~i-P~wvv 205 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNIL--CKITYVANVNPGGWA-PASVL 205 (235)
T ss_pred cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCe--EEEEEEEEeCCCCCc-cHHHH
Confidence 2233332222221 233333221 23445 3444 888888888777663 221
Q ss_pred -hhHHHHHHHHHHHHHhhhhc
Q 031775 133 -VAYVDFMVSITKDVADHITK 152 (153)
Q Consensus 133 -~~~~~~~~~~~k~ve~yll~ 152 (153)
.-.+..+-+++|.+.+|.+.
T Consensus 206 n~~~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 206 RAVYKREYPKFLKRFTSYVQE 226 (235)
T ss_pred HHHHHhhchHHHHHHHHHHHH
Confidence 11245667888888888764
No 68
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=50.74 E-value=76 Score=25.35 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=54.4
Q ss_pred ceEEEEEEEEcCCHHHHHHHHh--cccCCccccCCC-----ceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-E
Q 031775 4 VGKIEKQIEIEVPAEKFYHIWK--KQSYHVPTASPA-----NIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-H 75 (153)
Q Consensus 4 ~~k~~~ei~i~~~a~k~w~~~~--d~~~~lpk~~P~-----~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-i 75 (153)
.|...+.+. ++|++--|.+.. .. --..-|+.. ......+-. |.--..-.++|..+|..-.+++... +
T Consensus 36 dGR~ytais-~ip~~~G~~L~~l~~i-g~~igWlFA~e~~~~~NGfslTG---G~F~~~~~v~F~~~ge~l~I~Q~~~Gl 110 (224)
T cd00255 36 DGRAYTAIS-NIPESLGPSLRPLAPI-GGTIGWLFALEQGGAKNGFSLTG---GEFTRQAEVTFYTGGEKLRITQVARGL 110 (224)
T ss_pred CCeEEEEEe-cCChHhchhhhhhhhh-cCceeeEEEeecCCccCcEeccC---ceEEEEEEEEEcCCCEEEEEEEEEecc
Confidence 345555555 888887776654 22 223345543 222333222 2233445689988788889999999 9
Q ss_pred eCCCcEEEEEEEeccc
Q 031775 76 DDANMSVTLIGLEGDV 91 (153)
Q Consensus 76 D~e~~~~~y~vieGd~ 91 (153)
|..+...-=..|+|.+
T Consensus 111 D~~~~L~~~~~i~G~v 126 (224)
T cd00255 111 DSHGHLLLDTVISGRV 126 (224)
T ss_pred CccCeEEEEEEEEeec
Confidence 9999999999999986
No 69
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=41.61 E-value=61 Score=25.25 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=27.2
Q ss_pred EEEEEecCCceeeEEEEEE-EeCCCcEEEEEEEeccc
Q 031775 56 KLWTYSVEGRTETFKEKVE-HDDANMSVTLIGLEGDV 91 (153)
Q Consensus 56 r~~~~~~~g~~~~~kEri~-iD~e~~~~~y~vieGd~ 91 (153)
-.++|..| ..-.++++.. +|..+...--..|+|.+
T Consensus 92 s~v~F~tG-e~l~itq~~~GlD~~~~L~~d~~i~G~v 127 (192)
T PF07474_consen 92 SEVEFATG-ERLTITQTARGLDSDGYLLLDTVISGQV 127 (192)
T ss_dssp EEEEESSS---EEEEEEEEEE-TTS-EEEEEEEEEEE
T ss_pred EEEEEeCC-CEEEEEEEecccCCCCcEEEEEEEeccC
Confidence 46889666 6679999999 99999999999999985
No 70
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.97 E-value=1.4e+02 Score=21.06 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=52.1
Q ss_pred EEEEEcCCHHHHHHHHhcc-cCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeCCCcEEEEEE
Q 031775 9 KQIEIEVPAEKFYHIWKKQ-SYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDDANMSVTLIG 86 (153)
Q Consensus 9 ~ei~i~~~a~k~w~~~~d~-~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~e~~~~~y~v 86 (153)
.+..+++||+.||+.+.+. -..+.+.-...+.--++ +|- --.=++..+. .++=+|+ + ..++.|.++.
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G~------~Y~K~~~~~~---~~~v~It~~-~~~~~Y~~~~ 71 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KGF------SYQKKFKNKR---EAKVKITEY-EPNKRYAATF 71 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CCc------EEEEEcCCCC---EEEEEEEEE-cCCCEEEEEE
Confidence 4566899999999988643 12222222221111111 231 1111111111 4444566 4 5567777765
Q ss_pred EecccccceEEEEEEEEEeecCCCCCeeEEEEEEEEEec
Q 031775 87 LEGDVFKHFKSWLPVYKVSPKGDGSAGSIATCSIAYEKL 125 (153)
Q Consensus 87 ieGd~~~~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~ 125 (153)
.- ....+..+-++.|.++|. |.|..+=+++..
T Consensus 72 ~s-----~~~~~~i~Y~i~~~~~~~--~~v~y~E~~~~~ 103 (120)
T PF11687_consen 72 SS-----SRGTFTISYEIEPLDDGS--IEVTYEEEYESK 103 (120)
T ss_pred Ee-----cCCCEEEEEEEEECCCCc--EEEEEEEEEccC
Confidence 44 233566777888888885 777776666543
No 71
>smart00682 G2F G2 nidogen domain and fibulin.
Probab=37.46 E-value=73 Score=25.52 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=54.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHhc------ccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecCCceeeEEEEEE-EeC
Q 031775 5 GKIEKQIEIEVPAEKFYHIWKK------QSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVEGRTETFKEKVE-HDD 77 (153)
Q Consensus 5 ~k~~~ei~i~~~a~k~w~~~~d------~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~g~~~~~kEri~-iD~ 77 (153)
|...+.|. +.|++--|.+..= +.=++.+=.|+......+-.|. --..-.++| +++..-.+++... +|.
T Consensus 39 gr~ytaIs-~ip~~~G~~l~~l~~ig~~igWlFA~e~~~a~NGf~lTGG~---F~~~s~v~F-~~ge~l~i~Q~~~GlD~ 113 (227)
T smart00682 39 GRAYTAIS-NIPSPLGAALRPLVPIGGTIGWLFAKEQGGAVNGFQLTGGV---FTRETEVTF-AGGEILRIKQTFSGLDE 113 (227)
T ss_pred ceEEEEec-CCchhhhhhhhhhhhhccceeeeEEeccCCccccEEecCeE---EEEEEEEEE-CCCCEEEEEEEEeccCc
Confidence 44555554 6777776665431 1123444455555555544332 223456889 6887889999999 999
Q ss_pred CCcEEEEEEEeccc
Q 031775 78 ANMSVTLIGLEGDV 91 (153)
Q Consensus 78 e~~~~~y~vieGd~ 91 (153)
.+...--..|.|.+
T Consensus 114 ~~~L~v~~~i~G~v 127 (227)
T smart00682 114 HGYLKVKIEVSGRV 127 (227)
T ss_pred cccEEEEEEEEeec
Confidence 99999999999986
No 72
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=35.01 E-value=2.1e+02 Score=22.00 Aligned_cols=114 Identities=7% Similarity=-0.022 Sum_probs=63.1
Q ss_pred EEEEEEEc-CCHHHHHHHHhcccCCccccCCCceeeEEEEeCccCCCCcEEEEEEecC---CceeeEE--EEEEEeCCCc
Q 031775 7 IEKQIEIE-VPAEKFYHIWKKQSYHVPTASPANIKAVDVHEGEWHHHGSVKLWTYSVE---GRTETFK--EKVEHDDANM 80 (153)
Q Consensus 7 ~~~ei~i~-~~a~k~w~~~~d~~~~lpk~~P~~i~sve~~eGd~g~~Gsvr~~~~~~~---g~~~~~k--Eri~iD~e~~ 80 (153)
+.++..+. ++++.+++++.|. ..-++|.+...+ +.-.+.+ + --|-.+.+..- .+..++- .+..+|.++.
T Consensus 51 ~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~~~~~-~~~~~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~ 125 (207)
T cd08910 51 YKVFGVLEDCSPSLLADVYMDL-EYRKQWDQYVKE-LYEKECD-G--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGR 125 (207)
T ss_pred EEEEEEEcCCCHHHHHHHHhCH-HHHHHHHHHHHh-heeecCC-C--CEEEEEEEEcCCCCCCceEEEEEEeccccCCCC
Confidence 44566666 7999999999997 678899998444 3212222 1 12444444221 1123442 2223555544
Q ss_pred EEEE---EEEecc-cc--c---ceEEEEEEEEEeecCCCCCeeEEEEEEEEEecCC
Q 031775 81 SVTL---IGLEGD-VF--K---HFKSWLPVYKVSPKGDGSAGSIATCSIAYEKLNA 127 (153)
Q Consensus 81 ~~~y---~vieGd-~~--~---~~~s~~~~~~v~~~~~gg~~s~v~wt~~ye~~~~ 127 (153)
.+.. ...+-+ +. . ....|.+.+.++|.++++ |.+.+...-.+.+.
T Consensus 126 ~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~--t~i~~~~~~DPgG~ 179 (207)
T cd08910 126 KIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKG--SKVFMYYFDNPGGM 179 (207)
T ss_pred eEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCc--eEEEEEEEeCCCCc
Confidence 2211 222211 11 1 356888899999877665 87777666655443
No 73
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=33.37 E-value=1.7e+02 Score=22.47 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=20.7
Q ss_pred eEEEEEE-EeCCCcEEEEEEEecccc
Q 031775 68 TFKEKVE-HDDANMSVTLIGLEGDVF 92 (153)
Q Consensus 68 ~~kEri~-iD~e~~~~~y~vieGd~~ 92 (153)
.+||-+- +++.+..+.|.+-++.+.
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~l~ 74 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESKLE 74 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeeecc
Confidence 7888888 889998888888887653
No 74
>PHA02629 A-type inclusion body protein; Provisional
Probab=32.98 E-value=3.5 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=25.8
Q ss_pred ecCCCCCeeEEEEEEEEEecCCCCCChhhHHHHHHHHHHHHHhhh
Q 031775 106 PKGDGSAGSIATCSIAYEKLNANVPDPVAYVDFMVSITKDVADHI 150 (153)
Q Consensus 106 ~~~~gg~~s~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ve~yl 150 (153)
..++|++|.-++.+.+||++--.+ .+.-...++...|++|.+.
T Consensus 14 d~gng~~gngc~s~c~ferk~iav--leaelr~~metik~lekf~ 56 (61)
T PHA02629 14 DGGNGNGGNGCTSSCEFERKIIAV--LEAELRKSMETIKALEKFM 56 (61)
T ss_pred ccCCCCCCCCccchhHhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 334443345567888888764332 2222456777888888875
No 75
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=27.48 E-value=1.9e+02 Score=20.93 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=24.4
Q ss_pred EEEEE-EeCCCcEEEEEEEecc---ccc--ceEEEEEEEE
Q 031775 70 KEKVE-HDDANMSVTLIGLEGD---VFK--HFKSWLPVYK 103 (153)
Q Consensus 70 kEri~-iD~e~~~~~y~vieGd---~~~--~~~s~~~~~~ 103 (153)
.++++ .+-+.+.++|.-++|| +|+ .|+.|.....
T Consensus 59 ~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~~v~~~ 98 (131)
T COG0231 59 DDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQYELPKD 98 (131)
T ss_pred CCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEEEecch
Confidence 45788 7777788888889998 353 5777766553
No 76
>PF07617 DUF1579: Protein of unknown function (DUF1579); InterPro: IPR011473 This is a family of paralogous hypothetical proteins identified in Rhodopirellula baltica that also has members in Gloeobacter violaceus, Rhizobium meliloti and Agrobacterium tumefaciens, amongst others.
Probab=25.41 E-value=2.9e+02 Score=20.63 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=25.4
Q ss_pred EEeCccCCCCcEEEEEEe-----cCCceeeEEEEEE-EeCCCcEEEEEEEe
Q 031775 44 VHEGEWHHHGSVKLWTYS-----VEGRTETFKEKVE-HDDANMSVTLIGLE 88 (153)
Q Consensus 44 ~~eGd~g~~Gsvr~~~~~-----~~g~~~~~kEri~-iD~e~~~~~y~vie 88 (153)
+-+|.++..|-+-.++.. ..|+...+|+.++ +|+..++++-.++.
T Consensus 92 ~~~G~~d~~gk~ltl~~~gp~~~~~G~~~~~R~v~~~~ddd~~~~~~~~~~ 142 (159)
T PF07617_consen 92 VYEGTLDDDGKTLTLNGEGPDPGGSGKMWGYRDVIEFVDDDHRTLTSYMKQ 142 (159)
T ss_pred eEccccCCCCCEEEEEEEecCCCCCCcccceEEEEEEeCCCeeEEEEEEeC
Confidence 345654445554444432 1233346788888 77777777766554
Done!