BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031776
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EGC|B Chain B, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
           Eya2 Eya Domain
          Length = 294

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 15/130 (11%)

Query: 2   DATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFF 61
           D  + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F
Sbjct: 20  DNEIERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLF 77

Query: 62  YEQIENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIA 108
           +  +E+ +   +D +   D+G+DLS Y F  DG     P  +L L           +K+A
Sbjct: 78  FNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLA 137

Query: 109 YRHRAIAHKY 118
           +R+R +   Y
Sbjct: 138 FRYRRVKEMY 147


>pdb|3HB0|A Chain A, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|B Chain B, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|C Chain C, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB0|D Chain D, Structure Of Edeya2 Complexed With Bef3
 pdb|3HB1|A Chain A, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|B Chain B, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|C Chain C, Crystal Structure Of Ed-Eya2 Complexed With Alf3
 pdb|3HB1|D Chain D, Crystal Structure Of Ed-Eya2 Complexed With Alf3
          Length = 274

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 15/127 (11%)

Query: 5   LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
           + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F+  
Sbjct: 3   MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60

Query: 65  IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
           +E+ +   +D +   D+G+DLS Y F  DG     P  +L L           +K+A+R+
Sbjct: 61  LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPAANLCLGSGVHGGVDWMRKLAFRY 120

Query: 112 RAIAHKY 118
           R +   Y
Sbjct: 121 RRVKEMY 127


>pdb|3GEB|A Chain A, Crystal Structure Of Edeya2
 pdb|3GEB|B Chain B, Crystal Structure Of Edeya2
 pdb|3GEB|C Chain C, Crystal Structure Of Edeya2
 pdb|3GEB|D Chain D, Crystal Structure Of Edeya2
          Length = 274

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 15/127 (11%)

Query: 5   LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQ 64
           + +VF+WD+DET+I+  SLL GTFA  +   KD    V+IG M E  I N+ D   F+  
Sbjct: 3   MERVFVWDLDETIIIFHSLLTGTFASRYG--KDTTTSVRIGLMMEEMIFNLADTHLFFND 60

Query: 65  IENNNTPFLDALKQYDDGRDLSDYEFDRDGL--CPPFDDLSL-----------KKIAYRH 111
           +E+ +   +D +   D+G+DLS Y F  DG     P  +L L           +K+A+R+
Sbjct: 61  LEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRY 120

Query: 112 RAIAHKY 118
           R +   Y
Sbjct: 121 RRVKEMY 127


>pdb|1II4|A Chain A, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1II4|B Chain B, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1II4|C Chain C, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1II4|D Chain D, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1IIL|A Chain A, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1IIL|B Chain B, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1IIL|C Chain C, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
 pdb|1IIL|D Chain D, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
           (Fgfr2) In Complex With Fgf2
          Length = 155

 Score = 30.8 bits (68), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54  NVCDECFFYEQIENNN 69
           +V DECFF+E++E+NN
Sbjct: 96  SVTDECFFFERLESNN 111


>pdb|1BAS|A Chain A, Three-Dimensional Structures Of Acidic And Basic
           Fibroblast Growth Factors
          Length = 154

 Score = 30.8 bits (68), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54  NVCDECFFYEQIENNN 69
           +V DECFF+E++E+NN
Sbjct: 95  SVTDECFFFERLESNN 110


>pdb|1BLA|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
           Replaced By Ser And Cys 96 Replaced By Ser, Nmr
 pdb|1BLD|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
           Replaced By Ser And Cys 96 Replaced By Ser, Nmr
          Length = 155

 Score = 30.4 bits (67), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54  NVCDECFFYEQIENNN 69
           +V DECFF+E++E+NN
Sbjct: 96  SVTDECFFFERLESNN 111


>pdb|1BFB|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
           Tetramer Fragment
 pdb|1BFC|A Chain A, Basic Fibroblast Growth Factor Complexed With Heparin
           Hexamer Fragment
          Length = 147

 Score = 30.4 bits (67), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54  NVCDECFFYEQIENNN 69
           +V DECFF+E++E+NN
Sbjct: 88  SVTDECFFFERLESNN 103


>pdb|1BFG|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At 1.6
           Angstroms Resolution
          Length = 146

 Score = 30.4 bits (67), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54  NVCDECFFYEQIENNN 69
           +V DECFF+E++E+NN
Sbjct: 87  SVTDECFFFERLESNN 102


>pdb|1CVS|A Chain A, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
 pdb|1CVS|B Chain B, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
 pdb|1EV2|A Chain A, Crystal Structure Of Fgf2 In Complex With The
          Extracellular Ligand Binding Domain Of Fgf Receptor 2
          (Fgfr2)
 pdb|1EV2|B Chain B, Crystal Structure Of Fgf2 In Complex With The
          Extracellular Ligand Binding Domain Of Fgf Receptor 2
          (Fgfr2)
 pdb|1EV2|C Chain C, Crystal Structure Of Fgf2 In Complex With The
          Extracellular Ligand Binding Domain Of Fgf Receptor 2
          (Fgfr2)
 pdb|1EV2|D Chain D, Crystal Structure Of Fgf2 In Complex With The
          Extracellular Ligand Binding Domain Of Fgf Receptor 2
          (Fgfr2)
 pdb|1FQ9|A Chain A, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
          Complex
 pdb|1FQ9|B Chain B, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
          Complex
          Length = 132

 Score = 30.0 bits (66), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 15/16 (93%)

Query: 54 NVCDECFFYEQIENNN 69
          +V DECFF+E++E+NN
Sbjct: 73 SVTDECFFFERLESNN 88


>pdb|1XI7|A Chain A, Nmr Structure Of The Carboxyl-Terminal Cysteine Domain Of
           The Vhv1.1 Polydnaviral Gene Product
 pdb|1XJ1|A Chain A, 3d Solution Structure Of The C-Terminal Cysteine-Rich
           Domain Of The Vhv1.1 Polydnaviral Gene Product
          Length = 61

 Score = 29.6 bits (65), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 62  YEQIENNNTPFLDALKQYDDGRDLSDYEFDRD--GLCPPFD 100
           Y++  N + P      +Y D +++  +  DRD  G+C PFD
Sbjct: 11  YQKCVNADKPCCSKTVRYGDSKNVRKFICDRDGEGVCVPFD 51


>pdb|1FGA|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
           Growth Factor At 1.6 Angstroms Resolution And Analysis
           Of Presumed Heparin Binding Sites By Selenate
           Substitution
 pdb|2FGF|A Chain A, Three-Dimensional Structure Of Human Basic Fibroblast
           Growth Factor, A Structural Homolog Of Interleukin 1beta
 pdb|4FGF|A Chain A, Refinement Of The Structure Of Human Basic Fibroblast
           Growth Factor At 1.6 Angstroms Resolution And Analysis
           Of Presumed Heparin Binding Sites By Selenate
           Substitution
          Length = 146

 Score = 29.3 bits (64), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 55  VCDECFFYEQIENNN 69
           V DECFF+E++E+NN
Sbjct: 88  VTDECFFFERLESNN 102


>pdb|1BFF|A Chain A, The 154 Amino Acid Form Of Human Basic Fibroblast Growth
          Factor
          Length = 129

 Score = 29.3 bits (64), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 55 VCDECFFYEQIENNN 69
          V DECFF+E++E+NN
Sbjct: 71 VTDECFFFERLESNN 85


>pdb|2BFH|A Chain A, Crystal Structure Of Basic Fibroblast Growth Factor At
          1.6 Angstroms Resolution
          Length = 128

 Score = 29.3 bits (64), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 55 VCDECFFYEQIENNN 69
          V DECFF+E++E+NN
Sbjct: 70 VTDECFFFERLESNN 84


>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
          [l-Gln35]ubiquitin With A Cubic Space Group
 pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
          [l-Gln35]ubiquitin With A Cubic Space Group
          Length = 76

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
          I NV  +    EQI  +    + A KQ +DGR LSDY   ++
Sbjct: 23 IENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64


>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
          K63-Linked Di- Ubiquitin
 pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
          K63-linked Di- Ubiquitin
 pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
          K63-linked Di- Ubiquitin
          Length = 79

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
          I NV  +    E I  +    + A KQ +DGR LSDY   R+
Sbjct: 26 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRE 67


>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
          With Lys63-Linked Ubiquitin Dimer
 pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
          With Lys63-Linked Ubiquitin Dimer
 pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
          With Lys63-Linked Di-Ubiquitin
 pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
          With Lys63-Linked Di-Ubiquitin
 pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
 pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
          Lys63- Linked Di-Ubiquitin
 pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
          Lys63-Linked Di-Ubiquitin
 pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
          Lys63-Linked Di-Ubiquitin
          Length = 76

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 52 ILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
          I NV  +    E I  +    + A KQ +DGR LSDY   R+
Sbjct: 23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRE 64


>pdb|1M5X|A Chain A, Crystal Structure Of The Homing Endonuclease I-Msoi Bound
           To Its Dna Substrate
 pdb|1M5X|B Chain B, Crystal Structure Of The Homing Endonuclease I-Msoi Bound
           To Its Dna Substrate
          Length = 170

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 101 LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 142


>pdb|2FLD|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
 pdb|2FLD|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
          Length = 165

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 96  LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 137


>pdb|3FD2|A Chain A, Crystal Structure Of MmsoiDNA COMPLEX WITH CALCIUM
          Length = 373

 Score = 26.6 bits (57), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 101 LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 142



 Score = 26.6 bits (57), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 304 LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 345


>pdb|3KO2|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-7c)
 pdb|3KO2|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-7c)
 pdb|3KO2|F Chain F, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-7c)
 pdb|3KO2|G Chain G, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-7c)
          Length = 170

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 101 LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 142


>pdb|3MIP|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-8gcg)
 pdb|3MIP|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-8gcg)
          Length = 161

 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 96  LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 137


>pdb|3MIS|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-8g)
 pdb|3MIS|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
           (-8g)
          Length = 161

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 42  VQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRDLS 86
           ++I +   N IL++ +    Y Q + N + FLD +K  DD ++L+
Sbjct: 96  LRIKKKQANRILHIIN---LYPQAQKNPSKFLDLVKIVDDVQNLN 137


>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
          Variant
          Length = 76

 Score = 26.2 bits (56), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 63 EQIENNNTPFLDALKQYDDGRDLSDYEFDRD 93
          E I  +    L A KQ +DGR LSDY   ++
Sbjct: 36 EGIPPDQQKLLFARKQLEDGRTLSDYNIHKE 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,543,755
Number of Sequences: 62578
Number of extensions: 185826
Number of successful extensions: 455
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 29
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)