Query 031776
Match_columns 153
No_of_seqs 63 out of 65
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01658 EYA-cons_domain eyes 100.0 1.3E-64 2.8E-69 428.7 9.2 117 5-121 1-117 (274)
2 KOG3107 Predicted haloacid deh 100.0 1.2E-57 2.5E-62 404.8 7.1 133 1-135 192-338 (468)
3 TIGR02250 FCP1_euk FCP1-like p 76.6 1.5 3.2E-05 34.2 1.5 18 6-23 6-23 (156)
4 COG0546 Gph Predicted phosphat 71.3 4 8.7E-05 32.4 2.8 47 6-54 4-57 (220)
5 TIGR02137 HSK-PSP phosphoserin 70.9 2.3 5E-05 34.1 1.3 24 7-33 2-25 (203)
6 TIGR01491 HAD-SF-IB-PSPlk HAD- 70.4 2.7 5.8E-05 31.5 1.5 17 6-22 4-20 (201)
7 PHA02597 30.2 hypothetical pro 68.9 2.8 6.1E-05 31.9 1.4 26 7-33 3-28 (197)
8 TIGR01681 HAD-SF-IIIC HAD-supe 68.7 2.6 5.7E-05 31.0 1.2 14 7-20 1-14 (128)
9 PF05152 DUF705: Protein of un 65.1 3.7 8.1E-05 36.5 1.5 15 4-18 120-134 (297)
10 PF03031 NIF: NLI interacting 64.3 3.1 6.8E-05 30.9 0.8 16 8-23 2-17 (159)
11 TIGR01686 FkbH FkbH-like domai 64.1 4.3 9.2E-05 34.3 1.7 14 5-18 2-15 (320)
12 PRK10725 fructose-1-P/6-phosph 62.1 5.7 0.00012 29.7 1.9 24 7-30 6-29 (188)
13 TIGR02253 CTE7 HAD superfamily 59.1 5.8 0.00013 30.4 1.5 20 7-26 3-22 (221)
14 PRK13707 conjugal transfer pil 56.5 4.8 0.0001 30.1 0.6 28 4-31 17-44 (101)
15 TIGR02009 PGMB-YQAB-SF beta-ph 56.0 7.5 0.00016 28.7 1.6 23 7-29 2-24 (185)
16 PRK14988 GMP/IMP nucleotidase; 55.9 5.8 0.00012 31.7 1.0 13 7-19 11-23 (224)
17 TIGR01422 phosphonatase phosph 55.7 7.3 0.00016 31.0 1.6 16 7-22 3-18 (253)
18 TIGR01548 HAD-SF-IA-hyp1 haloa 55.3 6 0.00013 30.3 1.0 12 9-20 3-14 (197)
19 TIGR03351 PhnX-like phosphonat 55.2 16 0.00034 28.2 3.3 25 7-31 2-26 (220)
20 TIGR01549 HAD-SF-IA-v1 haloaci 53.4 5.6 0.00012 28.8 0.6 16 8-23 1-16 (154)
21 PLN02575 haloacid dehalogenase 53.3 13 0.00028 33.6 2.9 48 7-56 132-187 (381)
22 PRK10563 6-phosphogluconate ph 53.0 8.6 0.00019 29.7 1.6 27 7-33 5-34 (221)
23 PRK13288 pyrophosphatase PpaX; 52.8 9.7 0.00021 29.4 1.8 23 7-29 4-26 (214)
24 TIGR02254 YjjG/YfnB HAD superf 50.4 10 0.00022 28.9 1.6 24 7-30 2-25 (224)
25 PF07178 TraL: TraL protein; 49.9 6.3 0.00014 28.5 0.3 28 4-31 11-38 (95)
26 PRK11590 hypothetical protein; 49.3 9.9 0.00021 29.9 1.4 14 5-18 5-18 (211)
27 PF12710 HAD: haloacid dehalog 48.9 9.3 0.0002 28.2 1.1 14 9-22 1-14 (192)
28 TIGR01454 AHBA_synth_RP 3-amin 48.2 7.8 0.00017 29.7 0.7 21 9-29 1-21 (205)
29 PLN02779 haloacid dehalogenase 48.1 11 0.00024 31.5 1.6 28 5-32 39-67 (286)
30 TIGR01993 Pyr-5-nucltdase pyri 47.1 11 0.00024 28.4 1.3 20 8-27 2-21 (184)
31 PLN02954 phosphoserine phospha 45.0 12 0.00025 29.0 1.1 18 6-23 12-29 (224)
32 TIGR02251 HIF-SF_euk Dullard-l 44.8 9.7 0.00021 29.4 0.7 13 8-20 3-15 (162)
33 TIGR01509 HAD-SF-IA-v3 haloaci 43.3 40 0.00088 24.5 3.8 15 9-23 2-16 (183)
34 PRK10748 flavin mononucleotide 42.7 16 0.00036 29.2 1.7 23 7-29 11-33 (238)
35 PRK13478 phosphonoacetaldehyde 42.6 15 0.00033 29.7 1.5 17 7-23 5-21 (267)
36 PRK13226 phosphoglycolate phos 41.9 13 0.00028 29.5 1.0 47 7-53 13-64 (229)
37 TIGR01449 PGP_bact 2-phosphogl 40.5 12 0.00027 28.3 0.7 12 9-20 1-12 (213)
38 TIGR00338 serB phosphoserine p 40.5 16 0.00034 28.2 1.2 25 7-33 15-39 (219)
39 TIGR02252 DREG-2 REG-2-like, H 40.4 18 0.0004 27.4 1.6 21 7-27 1-21 (203)
40 PLN02940 riboflavin kinase 40.1 33 0.00071 30.2 3.3 29 5-33 10-41 (382)
41 TIGR01490 HAD-SF-IB-hyp1 HAD-s 39.7 12 0.00027 28.2 0.6 14 9-22 2-15 (202)
42 TIGR01489 DKMTPPase-SF 2,3-dik 39.7 17 0.00037 26.7 1.3 24 7-32 2-25 (188)
43 PLN02770 haloacid dehalogenase 39.2 19 0.00041 29.0 1.6 23 7-29 23-45 (248)
44 cd01427 HAD_like Haloacid deha 39.0 15 0.00032 24.4 0.8 18 8-25 1-18 (139)
45 PLN03243 haloacid dehalogenase 38.0 20 0.00044 29.7 1.7 49 7-55 25-79 (260)
46 TIGR01428 HAD_type_II 2-haloal 37.9 64 0.0014 24.4 4.2 26 7-33 2-27 (198)
47 TIGR01493 HAD-SF-IA-v2 Haloaci 37.8 18 0.00038 26.8 1.2 23 8-30 1-23 (175)
48 PRK13223 phosphoglycolate phos 37.6 17 0.00038 30.0 1.2 29 5-33 12-43 (272)
49 PRK11587 putative phosphatase; 37.5 17 0.00037 28.3 1.1 23 7-29 4-26 (218)
50 TIGR01488 HAD-SF-IB Haloacid D 37.4 14 0.00031 27.0 0.6 14 9-22 2-15 (177)
51 PRK13582 thrH phosphoserine ph 37.3 20 0.00044 27.1 1.4 12 7-18 2-13 (205)
52 COG0637 Predicted phosphatase/ 36.7 18 0.00039 29.0 1.1 27 7-33 3-32 (221)
53 PRK09449 dUMP phosphatase; Pro 36.2 18 0.0004 27.9 1.1 12 7-18 4-15 (224)
54 TIGR02762 TraL_TIGR type IV co 35.6 19 0.00042 26.3 1.0 27 4-30 11-37 (95)
55 PF04068 RLI: Possible Fer4-li 33.0 30 0.00065 21.5 1.4 9 7-15 2-10 (35)
56 TIGR01672 AphA HAD superfamily 32.5 24 0.00053 29.5 1.3 16 7-22 64-79 (237)
57 PRK13225 phosphoglycolate phos 32.0 22 0.00048 29.8 0.9 28 6-33 62-92 (273)
58 TIGR01990 bPGM beta-phosphoglu 31.7 29 0.00063 25.6 1.5 21 9-29 2-22 (185)
59 PF03767 Acid_phosphat_B: HAD 31.4 31 0.00068 28.4 1.7 18 6-24 72-89 (229)
60 PF13645 YkuD_2: L,D-transpept 30.5 32 0.0007 28.3 1.6 24 2-25 45-68 (176)
61 PRK09552 mtnX 2-hydroxy-3-keto 29.9 28 0.0006 27.3 1.1 19 6-24 3-21 (219)
62 PRK10826 2-deoxyglucose-6-phos 29.4 37 0.00079 26.4 1.7 23 6-28 7-29 (222)
63 TIGR02247 HAD-1A3-hyp Epoxide 28.8 37 0.00081 26.0 1.7 15 7-21 3-17 (211)
64 TIGR01545 YfhB_g-proteo haloac 27.9 32 0.0007 27.6 1.2 20 5-24 4-23 (210)
65 PF13869 NUDIX_2: Nucleotide h 27.5 23 0.0005 29.6 0.3 36 84-123 7-42 (188)
66 cd02188 gamma_tubulin Gamma-tu 27.5 78 0.0017 28.8 3.7 62 4-72 58-131 (431)
67 PRK11133 serB phosphoserine ph 26.8 34 0.00073 29.7 1.2 16 6-21 110-125 (322)
68 TIGR00756 PPR pentatricopeptid 26.3 86 0.0019 16.4 2.5 26 19-49 2-27 (35)
69 PRK13222 phosphoglycolate phos 25.8 46 0.00099 25.4 1.7 27 7-33 7-36 (226)
70 PF07026 DUF1317: Protein of u 25.0 78 0.0017 22.4 2.5 26 36-61 33-58 (60)
71 PF06941 NT5C: 5' nucleotidase 24.3 68 0.0015 24.8 2.4 23 11-33 7-29 (191)
72 PHA03398 viral phosphatase sup 24.2 42 0.00091 29.9 1.3 19 4-22 126-144 (303)
73 PF13419 HAD_2: Haloacid dehal 23.5 41 0.00088 23.7 0.9 15 9-23 1-15 (176)
74 TIGR01533 lipo_e_P4 5'-nucleot 23.1 48 0.001 28.4 1.5 14 5-18 74-87 (266)
75 PF01115 F_actin_cap_B: F-acti 22.9 50 0.0011 28.7 1.5 20 4-23 116-140 (242)
76 TIGR01680 Veg_Stor_Prot vegeta 22.3 47 0.001 29.2 1.3 30 102-131 206-238 (275)
77 smart00577 CPDc catalytic doma 22.1 57 0.0012 24.4 1.5 14 8-21 4-17 (148)
78 PF08994 T4_Gp59_C: T4 gene Gp 22.0 20 0.00043 27.5 -0.9 23 15-39 46-69 (103)
79 PF03900 Porphobil_deamC: Porp 21.9 84 0.0018 21.3 2.2 38 7-54 37-74 (74)
80 TIGR01684 viral_ppase viral ph 21.8 55 0.0012 29.2 1.6 19 4-22 124-142 (301)
81 PRK06698 bifunctional 5'-methy 21.7 38 0.00082 30.1 0.6 17 7-23 242-258 (459)
82 PF06937 EURL: EURL protein; 21.3 64 0.0014 28.8 1.9 28 105-133 254-281 (285)
83 COG1011 Predicted hydrolase (H 21.3 60 0.0013 24.7 1.5 19 6-24 4-22 (229)
84 PRK01158 phosphoglycolate phos 20.7 60 0.0013 25.0 1.5 15 7-21 4-18 (230)
No 1
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=100.00 E-value=1.3e-64 Score=428.70 Aligned_cols=117 Identities=59% Similarity=1.094 Sum_probs=116.1
Q ss_pred ceEEEEeeCCcceehhhhhcchhhhhhhCCCCChhhHHHHHHHHHHHHHhhhhhhhhhhhcccCCccccccccccCCCCC
Q 031776 5 LTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYDDGRD 84 (153)
Q Consensus 5 lerVFIWDLDETiIif~SLLtGsyA~~~~~~KD~~~~v~LG~rmEemIfnlaD~hfFfndlEecdqvhiddvssdDnGqD 84 (153)
++||||||||||||||||||||+||++|+|+|||+++++||+|||||||++||+||||||+|||||||||||++||||||
T Consensus 1 ~e~VfvWDlDETlIif~SLL~GsyA~~f~g~KD~~~~v~lG~r~E~lIl~l~D~~fFf~~lEe~dq~~lddv~~~DdG~D 80 (274)
T TIGR01658 1 PENVYVWDMDETLILLHSLLNGSYAESFNGSKDHKRGVEIGRRWEEMILEICDTHFFYEEIEECNEPFLDDVRSYDDGKD 80 (274)
T ss_pred CceeEEEeccchHHHHHHhhcchHHHHcCCCcCcHHHHHHHHHHHHHHHHHHHhhhhhhhHHhcCccchhhhhhcccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q 031776 85 LSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKEQ 121 (153)
Q Consensus 85 LS~Y~F~~dgf~~p~~~~nmRKLAfRyR~Ike~Y~~y 121 (153)
||+|+|.+|||++|.++.++||||||||+|||+|++|
T Consensus 81 Ls~Y~F~~D~f~~p~~~~~~rKLAyR~R~I~e~Y~~~ 117 (274)
T TIGR01658 81 LSRYEFKTDGFSTPTDDLNKRKLAYRHRAVAEIYEKG 117 (274)
T ss_pred ccccccccccCCCCccchhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999
No 2
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=100.00 E-value=1.2e-57 Score=404.84 Aligned_cols=133 Identities=34% Similarity=0.601 Sum_probs=124.9
Q ss_pred CCCCceEEEEeeCCcceehhhhhcchhhhhhhCCCCChhhHHHHHHHHHHHHHhhhhhhhhhhhcccCCccccccccccC
Q 031776 1 MDATLTKVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTPFLDALKQYD 80 (153)
Q Consensus 1 ~ds~lerVFIWDLDETiIif~SLLtGsyA~~~~~~KD~~~~v~LG~rmEemIfnlaD~hfFfndlEecdqvhiddvssdD 80 (153)
.|+++|||||||||||||||||||||+||++|+ |||..++++|+||||||||+||+||||||||||||||||||++||
T Consensus 192 ~ds~~eRVFiWDlDEtiIifhslL~gsya~~y~--kd~~~~v~ig~~mE~mifn~aDth~F~ndleecdq~~vDdvs~dD 269 (468)
T KOG3107|consen 192 GDSTLERVFIWDLDETIIIFHSLLTGSYATRYG--KDPRAAVSIGLMMEEMIFNLADTHLFFNDLEECDQVHVDDVSSDD 269 (468)
T ss_pred CCCcceeEEEeeccchHHHHHHHhhhhhhhhcc--CCchhhhHHHHHHHHHHHHhhhHHHHHHHHhhhcccccccccccC
Confidence 489999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCC--------------CcchHHHHHHHHHHHHHHHhhcCCccceeeecccce
Q 031776 81 DGRDLSDYEFDRDGLCPPF--------------DDLSLKKIAYRHRAIAHKYKEQGSYWSSVQVGRKSQ 135 (153)
Q Consensus 81 nGqDLS~Y~F~~dgf~~p~--------------~~~nmRKLAfRyR~Ike~Y~~y~~n~~~~~~~~~~~ 135 (153)
||||||.|+|.+|||+++. +.+||||||||||++||+|++|+||+-++----|++
T Consensus 270 ngqdLs~y~f~~d~fsa~~~~~~~l~~~~~v~g~vd~mr~laFr~re~~e~~~~y~nnv~~l~~p~~~e 338 (468)
T KOG3107|consen 270 NGQDLSTYNFVTDGFSAFTAFSANLCLKTGVRGGVDWMRKLAFRYREVKEIYNTYKNNVGGLTGPNKRE 338 (468)
T ss_pred CcccccceeeccCCCcCcCccccccccccccchhhhhhhccchhhHHHHHHHHHHHhhhhcccCchhhH
Confidence 9999999999999999854 357999999999999999999999998765544444
No 3
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=76.63 E-value=1.5 Score=34.15 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=13.6
Q ss_pred eEEEEeeCCcceehhhhh
Q 031776 6 TKVFIWDMDETLILLKSL 23 (153)
Q Consensus 6 erVFIWDLDETiIif~SL 23 (153)
+-+-|+|||||+|=....
T Consensus 6 kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred ceEEEEeCCCCccccccc
Confidence 457799999999855443
No 4
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=71.25 E-value=4 Score=32.35 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=29.9
Q ss_pred eEEEEeeCCcceehhhhhcchhhh---hhhCCCCChhhHHH----HHHHHHHHHHh
Q 031776 6 TKVFIWDMDETLILLKSLLNGTFA---QSFNDLKDADKGVQ----IGRMWENHILN 54 (153)
Q Consensus 6 erVFIWDLDETiIif~SLLtGsyA---~~~~~~KD~~~~v~----LG~rmEemIfn 54 (153)
.++.|||||.||+=....+..++. ++++ .++..... +|.-..++|..
T Consensus 4 ~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~~~~~~ 57 (220)
T COG0546 4 IKAILFDLDGTLVDSAEDILRAFNAALAELG--LPPLDEEEIRQLIGLGLDELIER 57 (220)
T ss_pred CCEEEEeCCCccccChHHHHHHHHHHHHHcC--CCCCCHHHHHHHhcCCHHHHHHH
Confidence 367899999999999988888544 5554 33222222 44455555543
No 5
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=70.89 E-value=2.3 Score=34.15 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=17.3
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (153)
|+.++|||+|||=- +-..++.+.|
T Consensus 2 ~la~FDlD~TLi~~---~w~~~~~~~g 25 (203)
T TIGR02137 2 EIACLDLEGVLVPE---IWIAFAEKTG 25 (203)
T ss_pred eEEEEeCCcccHHH---HHHHHHHHcC
Confidence 67899999999943 2346666654
No 6
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=70.43 E-value=2.7 Score=31.46 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=13.8
Q ss_pred eEEEEeeCCcceehhhh
Q 031776 6 TKVFIWDMDETLILLKS 22 (153)
Q Consensus 6 erVFIWDLDETiIif~S 22 (153)
.+..|||||.|||=..+
T Consensus 4 ~k~viFD~DGTLid~~~ 20 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMS 20 (201)
T ss_pred ceEEEEeCCCCCcCCcc
Confidence 46799999999997544
No 7
>PHA02597 30.2 hypothetical protein; Provisional
Probab=68.88 E-value=2.8 Score=31.93 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (153)
+.+|||||.||+=+..-+. ...++||
T Consensus 3 k~viFDlDGTLiD~~~~~~-~~~~~~g 28 (197)
T PHA02597 3 PTILTDVDGVLLSWQSGLP-YFAQKYN 28 (197)
T ss_pred cEEEEecCCceEchhhccH-HHHHhcC
Confidence 5789999999998777554 2334565
No 8
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=68.72 E-value=2.6 Score=31.04 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=11.7
Q ss_pred EEEEeeCCcceehh
Q 031776 7 KVFIWDMDETLILL 20 (153)
Q Consensus 7 rVFIWDLDETiIif 20 (153)
++++||||.|+.=.
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 57899999999833
No 9
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=65.06 E-value=3.7 Score=36.50 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.3
Q ss_pred CceEEEEeeCCccee
Q 031776 4 TLTKVFIWDMDETLI 18 (153)
Q Consensus 4 ~lerVFIWDLDETiI 18 (153)
+.+.|-|+|||+|+|
T Consensus 120 ~~phVIVfDlD~TLI 134 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLI 134 (297)
T ss_pred CCCcEEEEECCCccc
Confidence 457899999999999
No 10
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=64.34 E-value=3.1 Score=30.88 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=11.0
Q ss_pred EEEeeCCcceehhhhh
Q 031776 8 VFIWDMDETLILLKSL 23 (153)
Q Consensus 8 VFIWDLDETiIif~SL 23 (153)
.-|+|||||||--...
T Consensus 2 ~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEE-CTTTEEEESS
T ss_pred EEEEeCCCcEEEEeec
Confidence 3589999998865543
No 11
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=64.07 E-value=4.3 Score=34.34 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.3
Q ss_pred ceEEEEeeCCccee
Q 031776 5 LTKVFIWDMDETLI 18 (153)
Q Consensus 5 lerVFIWDLDETiI 18 (153)
..+++|||+|+||.
T Consensus 2 ~~k~~v~DlDnTlw 15 (320)
T TIGR01686 2 ALKVLVLDLDNTLW 15 (320)
T ss_pred CeEEEEEcCCCCCC
Confidence 56899999999994
No 12
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=62.12 E-value=5.7 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=16.7
Q ss_pred EEEEeeCCcceehhhhhcchhhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (153)
.+.|||||-|||=+.....-++.+
T Consensus 6 ~~viFD~DGTLiDs~~~~~~a~~~ 29 (188)
T PRK10725 6 AGLIFDMDGTILDTEPTHRKAWRE 29 (188)
T ss_pred eEEEEcCCCcCccCHHHHHHHHHH
Confidence 457999999999765554444433
No 13
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=59.07 E-value=5.8 Score=30.38 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.3
Q ss_pred EEEEeeCCcceehhhhhcch
Q 031776 7 KVFIWDMDETLILLKSLLNG 26 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtG 26 (153)
++.|||||.||+=......-
T Consensus 3 ~~viFDlDGTL~ds~~~~~~ 22 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGLAEK 22 (221)
T ss_pred eEEEEeCCCCCcCCCCccCH
Confidence 57899999999988776544
No 14
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=56.48 E-value=4.8 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=20.8
Q ss_pred CceEEEEeeCCcceehhhhhcchhhhhh
Q 031776 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~SLLtGsyA~~ 31 (153)
+-+|++.|++||-++++=.+.=|-.+++
T Consensus 17 ~~~ri~~~~~DE~~~~~~~~~~Gi~~~~ 44 (101)
T PRK13707 17 NQSRWFGLPLDELIPAAICIGWGITTSK 44 (101)
T ss_pred CCCeEEeeeHHHHHHHHHHHHHHHHHch
Confidence 4579999999999988766655544443
No 15
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=56.03 E-value=7.5 Score=28.74 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.8
Q ss_pred EEEEeeCCcceehhhhhcchhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (153)
++.|||||.||+=......-.+.
T Consensus 2 ~~iiFD~DGTL~ds~~~~~~~~~ 24 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWK 24 (185)
T ss_pred CeEEEcCCCcccCChHHHHHHHH
Confidence 56899999999988777655444
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=55.94 E-value=5.8 Score=31.71 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=11.9
Q ss_pred EEEEeeCCcceeh
Q 031776 7 KVFIWDMDETLIL 19 (153)
Q Consensus 7 rVFIWDLDETiIi 19 (153)
+++|||||.||+=
T Consensus 11 k~vIFDlDGTL~d 23 (224)
T PRK14988 11 DTVLLDMDGTLLD 23 (224)
T ss_pred CEEEEcCCCCccc
Confidence 6799999999987
No 17
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=55.73 E-value=7.3 Score=31.03 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.3
Q ss_pred EEEEeeCCcceehhhh
Q 031776 7 KVFIWDMDETLILLKS 22 (153)
Q Consensus 7 rVFIWDLDETiIif~S 22 (153)
+..|||||-|||=+.+
T Consensus 3 k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGS 18 (253)
T ss_pred eEEEEeCCCCeecCCC
Confidence 5689999999998643
No 18
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=55.28 E-value=6 Score=30.30 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=10.2
Q ss_pred EEeeCCcceehh
Q 031776 9 FIWDMDETLILL 20 (153)
Q Consensus 9 FIWDLDETiIif 20 (153)
.|||||-|||=.
T Consensus 3 viFD~DGTLiDs 14 (197)
T TIGR01548 3 LVLDMDGVMADV 14 (197)
T ss_pred eEEecCceEEec
Confidence 599999999944
No 19
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=55.21 E-value=16 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=17.9
Q ss_pred EEEEeeCCcceehhhhhcchhhhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQS 31 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~ 31 (153)
++.|||||-||+-......-.+.+.
T Consensus 2 k~iiFD~DGTL~ds~~~~~~~~~~~ 26 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYRALRQA 26 (220)
T ss_pred cEEEEecCCCeeccCchHHHHHHHH
Confidence 4679999999997766655554433
No 20
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=53.40 E-value=5.6 Score=28.81 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.7
Q ss_pred EEEeeCCcceehhhhh
Q 031776 8 VFIWDMDETLILLKSL 23 (153)
Q Consensus 8 VFIWDLDETiIif~SL 23 (153)
+.|||+|-||+=....
T Consensus 1 ~iifD~DGTL~d~~~~ 16 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA 16 (154)
T ss_pred CeEecCCCcccccHHH
Confidence 4799999999987533
No 21
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=53.30 E-value=13 Score=33.60 Aligned_cols=48 Identities=21% Similarity=0.046 Sum_probs=27.5
Q ss_pred EEEEeeCCcceehh----hhhcchhhhhhhCCCCChhhH----HHHHHHHHHHHHhhh
Q 031776 7 KVFIWDMDETLILL----KSLLNGTFAQSFNDLKDADKG----VQIGRMWENHILNVC 56 (153)
Q Consensus 7 rVFIWDLDETiIif----~SLLtGsyA~~~~~~KD~~~~----v~LG~rmEemIfnla 56 (153)
+.+|||||-|||=- +.-..-..++.+| .++... ...|+..++++-.++
T Consensus 132 ~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G--~~~~~~e~~~~~~G~~~~~~l~~ll 187 (381)
T PLN02575 132 LGAIFEWEGVIIEDNPDLENQAWLTLAQEEG--KSPPPAFILRRVEGMKNEQAISEVL 187 (381)
T ss_pred CEEEEcCcCcceeCHHHHHHHHHHHHHHHcC--CCCCHHHHHHHhcCCCHHHHHHHHh
Confidence 45899999999943 3222234556776 333222 234666666655543
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=53.01 E-value=8.6 Score=29.71 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=19.1
Q ss_pred EEEEeeCCcceehhhhhcchh---hhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNGT---FAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGs---yA~~~~ 33 (153)
+..|||+|.|||=...+..-. .+.+||
T Consensus 5 ~~viFD~DGTL~d~~~~~~~a~~~~~~~~g 34 (221)
T PRK10563 5 EAVFFDCDGTLVDSEVICSRAYVTMFAEFG 34 (221)
T ss_pred CEEEECCCCCCCCChHHHHHHHHHHHHHcC
Confidence 577999999999877665443 334455
No 23
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=52.75 E-value=9.7 Score=29.37 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEEEeeCCcceehhhhhcchhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (153)
+..|||||.||+=......-.+.
T Consensus 4 ~~viFD~DGTL~ds~~~~~~a~~ 26 (214)
T PRK13288 4 NTVLFDLDGTLINTNELIISSFL 26 (214)
T ss_pred cEEEEeCCCcCccCHHHHHHHHH
Confidence 56799999999987766555553
No 24
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=50.40 E-value=10 Score=28.85 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=18.1
Q ss_pred EEEEeeCCcceehhhhhcchhhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQ 30 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~ 30 (153)
+..|||||.|||=.++...-.+++
T Consensus 2 k~viFD~DGTL~d~~~~~~~~~~~ 25 (224)
T TIGR02254 2 KTLLFDLDDTILDFQAAEALALRL 25 (224)
T ss_pred CEEEEcCcCcccccchHHHHHHHH
Confidence 468999999999887765544444
No 25
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=49.91 E-value=6.3 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=21.8
Q ss_pred CceEEEEeeCCcceehhhhhcchhhhhh
Q 031776 4 TLTKVFIWDMDETLILLKSLLNGTFAQS 31 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~SLLtGsyA~~ 31 (153)
+-+|++.|++||-++.+-.+.-|-..+.
T Consensus 11 ~p~~il~~~~De~~~~~~~~~~gi~~~~ 38 (95)
T PF07178_consen 11 DPPRILFWPMDEFIPALILFVIGILSGH 38 (95)
T ss_pred CcceeeeecHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999998877776655443
No 26
>PRK11590 hypothetical protein; Provisional
Probab=49.26 E-value=9.9 Score=29.93 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.4
Q ss_pred ceEEEEeeCCccee
Q 031776 5 LTKVFIWDMDETLI 18 (153)
Q Consensus 5 lerVFIWDLDETiI 18 (153)
-.++.|+|+|.||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 35789999999999
No 27
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=48.88 E-value=9.3 Score=28.23 Aligned_cols=14 Identities=43% Similarity=0.487 Sum_probs=12.2
Q ss_pred EEeeCCcceehhhh
Q 031776 9 FIWDMDETLILLKS 22 (153)
Q Consensus 9 FIWDLDETiIif~S 22 (153)
.|||+|.||+--.+
T Consensus 1 v~fD~DGTL~~~~~ 14 (192)
T PF12710_consen 1 VIFDFDGTLTDSDS 14 (192)
T ss_dssp EEEESBTTTBSSHH
T ss_pred eEEecCcCeecCCC
Confidence 48999999998884
No 28
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=48.23 E-value=7.8 Score=29.68 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=15.5
Q ss_pred EEeeCCcceehhhhhcchhhh
Q 031776 9 FIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 9 FIWDLDETiIif~SLLtGsyA 29 (153)
.|||||.||+=-.+...-.+.
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~ 21 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFA 21 (205)
T ss_pred CeecCcCccccCHHHHHHHHH
Confidence 389999999976666555544
No 29
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=48.07 E-value=11 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred ceEEEEeeCCcceehhh-hhcchhhhhhh
Q 031776 5 LTKVFIWDMDETLILLK-SLLNGTFAQSF 32 (153)
Q Consensus 5 lerVFIWDLDETiIif~-SLLtGsyA~~~ 32 (153)
.-+..|||||.||+=.. .+..-.+.+.+
T Consensus 39 ~~k~VIFDlDGTLvDS~~~~~~~a~~~~l 67 (286)
T PLN02779 39 LPEALLFDCDGVLVETERDGHRVAFNDAF 67 (286)
T ss_pred CCcEEEEeCceeEEccccHHHHHHHHHHH
Confidence 34678999999999887 66655544333
No 30
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=47.07 E-value=11 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=14.3
Q ss_pred EEEeeCCcceehhhhhcchh
Q 031776 8 VFIWDMDETLILLKSLLNGT 27 (153)
Q Consensus 8 VFIWDLDETiIif~SLLtGs 27 (153)
+.|||||-||+=.......+
T Consensus 2 ~viFDlDGTL~ds~~~~~~~ 21 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFLQ 21 (184)
T ss_pred eEEEeCCCCCCCCcccHHHH
Confidence 68999999999664444333
No 31
>PLN02954 phosphoserine phosphatase
Probab=44.96 E-value=12 Score=28.99 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.8
Q ss_pred eEEEEeeCCcceehhhhh
Q 031776 6 TKVFIWDMDETLILLKSL 23 (153)
Q Consensus 6 erVFIWDLDETiIif~SL 23 (153)
.+++|+|||-||+--.++
T Consensus 12 ~k~viFDfDGTL~~~~~~ 29 (224)
T PLN02954 12 ADAVCFDVDSTVCVDEGI 29 (224)
T ss_pred CCEEEEeCCCcccchHHH
Confidence 368899999999977665
No 32
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=44.83 E-value=9.7 Score=29.36 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=10.3
Q ss_pred EEEeeCCcceehh
Q 031776 8 VFIWDMDETLILL 20 (153)
Q Consensus 8 VFIWDLDETiIif 20 (153)
.-|-|||||+|=.
T Consensus 3 ~lvlDLDeTLi~~ 15 (162)
T TIGR02251 3 TLVLDLDETLVHS 15 (162)
T ss_pred EEEEcCCCCcCCC
Confidence 4577999999954
No 33
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=43.26 E-value=40 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.0
Q ss_pred EEeeCCcceehhhhh
Q 031776 9 FIWDMDETLILLKSL 23 (153)
Q Consensus 9 FIWDLDETiIif~SL 23 (153)
.|||||.|||=..+.
T Consensus 2 vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 2 ILFDLDGVLVDTSSA 16 (183)
T ss_pred eeeccCCceechHHH
Confidence 689999999988665
No 34
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=42.67 E-value=16 Score=29.15 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.2
Q ss_pred EEEEeeCCcceehhhhhcchhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (153)
++.|+|||.||+=.++.+...+.
T Consensus 11 k~iiFDlDGTL~D~~~~~~~a~~ 33 (238)
T PRK10748 11 SALTFDLDDTLYDNRPVILRTEQ 33 (238)
T ss_pred eeEEEcCcccccCChHHHHHHHH
Confidence 57899999999988777665443
No 35
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=42.56 E-value=15 Score=29.69 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.1
Q ss_pred EEEEeeCCcceehhhhh
Q 031776 7 KVFIWDMDETLILLKSL 23 (153)
Q Consensus 7 rVFIWDLDETiIif~SL 23 (153)
+..|||||-|||=+++.
T Consensus 5 k~vIFDlDGTLiDs~~~ 21 (267)
T PRK13478 5 QAVIFDWAGTTVDFGSF 21 (267)
T ss_pred EEEEEcCCCCeecCCCc
Confidence 57899999999987543
No 36
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=41.95 E-value=13 Score=29.50 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=25.8
Q ss_pred EEEEeeCCcceehhhhhcchh---hhhhhCCCC-Chhh-HHHHHHHHHHHHH
Q 031776 7 KVFIWDMDETLILLKSLLNGT---FAQSFNDLK-DADK-GVQIGRMWENHIL 53 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGs---yA~~~~~~K-D~~~-~v~LG~rmEemIf 53 (153)
+..|||||.|||=......-. ...+||... +... ....|..+++++-
T Consensus 13 k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 64 (229)
T PRK13226 13 RAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLA 64 (229)
T ss_pred CEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHH
Confidence 468999999999765554443 334454211 1111 1125666666543
No 37
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=40.48 E-value=12 Score=28.34 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.9
Q ss_pred EEeeCCcceehh
Q 031776 9 FIWDMDETLILL 20 (153)
Q Consensus 9 FIWDLDETiIif 20 (153)
.|||||.|||=.
T Consensus 1 viFD~DGTL~Ds 12 (213)
T TIGR01449 1 VLFDLDGTLVDS 12 (213)
T ss_pred CeecCCCccccC
Confidence 389999999943
No 38
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=40.48 E-value=16 Score=28.17 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=17.9
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (153)
+++|+|+|.||+-..+.- ..+.+++
T Consensus 15 k~iiFD~DGTL~~~~~~~--~l~~~~g 39 (219)
T TIGR00338 15 KLVVFDMDSTLINAETID--EIAKIAG 39 (219)
T ss_pred CEEEEeCcccCCCchHHH--HHHHHhC
Confidence 589999999999877642 3344554
No 39
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=40.39 E-value=18 Score=27.43 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=14.9
Q ss_pred EEEEeeCCcceehhhhhcchh
Q 031776 7 KVFIWDMDETLILLKSLLNGT 27 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGs 27 (153)
++.|||||.||+=+.......
T Consensus 1 k~viFDlDGTL~d~~~~~~~a 21 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEV 21 (203)
T ss_pred CeEEEecCCceeeeCCCHHHH
Confidence 467999999999654444433
No 40
>PLN02940 riboflavin kinase
Probab=40.11 E-value=33 Score=30.19 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=20.3
Q ss_pred ceEEEEeeCCcceehhhhhcchhhh---hhhC
Q 031776 5 LTKVFIWDMDETLILLKSLLNGTFA---QSFN 33 (153)
Q Consensus 5 lerVFIWDLDETiIif~SLLtGsyA---~~~~ 33 (153)
+-+..|||||.||+=......-.+. ++||
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G 41 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYG 41 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcC
Confidence 4567899999999977666555443 5555
No 41
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=39.73 E-value=12 Score=28.24 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.0
Q ss_pred EEeeCCcceehhhh
Q 031776 9 FIWDMDETLILLKS 22 (153)
Q Consensus 9 FIWDLDETiIif~S 22 (153)
.++|+|+||+=.+|
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58999999998766
No 42
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=39.68 E-value=17 Score=26.73 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=17.3
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSF 32 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~ 32 (153)
-++|+|+|.||+=+.+.. ..+..+
T Consensus 2 ~~iiFD~dgTL~~~~~~~--~~~~~~ 25 (188)
T TIGR01489 2 VVVVSDFDGTITLNDSDD--WITDKF 25 (188)
T ss_pred eEEEEeCCCcccCCCchH--HHHHhc
Confidence 378999999999887753 234444
No 43
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=39.20 E-value=19 Score=29.03 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.3
Q ss_pred EEEEeeCCcceehhhhhcchhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (153)
+..|||||-|||=......-.+.
T Consensus 23 k~viFDlDGTLiDs~~~~~~a~~ 45 (248)
T PLN02770 23 EAVLFDVDGTLCDSDPLHYYAFR 45 (248)
T ss_pred CEEEEcCCCccCcCHHHHHHHHH
Confidence 56899999999987766554444
No 44
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=38.99 E-value=15 Score=24.45 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.5
Q ss_pred EEEeeCCcceehhhhhcc
Q 031776 8 VFIWDMDETLILLKSLLN 25 (153)
Q Consensus 8 VFIWDLDETiIif~SLLt 25 (153)
++|.|+|.|++--++...
T Consensus 1 ~~vfD~D~tl~~~~~~~~ 18 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA 18 (139)
T ss_pred CeEEccCCceEccCcccc
Confidence 478999999988886543
No 45
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=38.04 E-value=20 Score=29.72 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=26.6
Q ss_pred EEEEeeCCcceehhh-hhcc---hhhhhhhCCCCChhhH--HHHHHHHHHHHHhh
Q 031776 7 KVFIWDMDETLILLK-SLLN---GTFAQSFNDLKDADKG--VQIGRMWENHILNV 55 (153)
Q Consensus 7 rVFIWDLDETiIif~-SLLt---GsyA~~~~~~KD~~~~--v~LG~rmEemIfnl 55 (153)
+..|||||-|||=.. .+.. -..+.+||....+... ...|+...+++..+
T Consensus 25 k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l 79 (260)
T PLN03243 25 LGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEV 79 (260)
T ss_pred eEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 468999999999664 2222 2444556532223222 23466655554443
No 46
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.87 E-value=64 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~ 33 (153)
++.|+|||.|||=+.++ .-.+.+.++
T Consensus 2 k~viFD~dgTLiD~~~~-~~~~~~~~~ 27 (198)
T TIGR01428 2 KALVFDVYGTLFDVHSV-VERFAELYG 27 (198)
T ss_pred cEEEEeCCCcCccHHHH-HHHHHHHhC
Confidence 46799999999988875 334555553
No 47
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=37.84 E-value=18 Score=26.76 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.5
Q ss_pred EEEeeCCcceehhhhhcchhhhh
Q 031776 8 VFIWDMDETLILLKSLLNGTFAQ 30 (153)
Q Consensus 8 VFIWDLDETiIif~SLLtGsyA~ 30 (153)
+.|||||.|||=+....+..+..
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~ 23 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAA 23 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHH
Confidence 36899999999888766655443
No 48
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=37.61 E-value=17 Score=29.98 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=20.9
Q ss_pred ceEEEEeeCCcceehhhhhcchhhh---hhhC
Q 031776 5 LTKVFIWDMDETLILLKSLLNGTFA---QSFN 33 (153)
Q Consensus 5 lerVFIWDLDETiIif~SLLtGsyA---~~~~ 33 (153)
+-.+.|||||.||+=........+. ..++
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g 43 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELG 43 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcC
Confidence 5568999999999977666655444 4554
No 49
>PRK11587 putative phosphatase; Provisional
Probab=37.54 E-value=17 Score=28.31 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=16.4
Q ss_pred EEEEeeCCcceehhhhhcchhhh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA 29 (153)
+..|||||-|||=......-.+.
T Consensus 4 k~viFDlDGTL~Ds~~~~~~a~~ 26 (218)
T PRK11587 4 KGFLFDLDGTLVDSLPAVERAWS 26 (218)
T ss_pred CEEEEcCCCCcCcCHHHHHHHHH
Confidence 45799999999977655544433
No 50
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=37.40 E-value=14 Score=27.03 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=12.4
Q ss_pred EEeeCCcceehhhh
Q 031776 9 FIWDMDETLILLKS 22 (153)
Q Consensus 9 FIWDLDETiIif~S 22 (153)
+|+|+|.||+--.|
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 78999999997776
No 51
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=37.32 E-value=20 Score=27.14 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=11.2
Q ss_pred EEEEeeCCccee
Q 031776 7 KVFIWDMDETLI 18 (153)
Q Consensus 7 rVFIWDLDETiI 18 (153)
+++|+|||-||+
T Consensus 2 ~~v~FD~DGTL~ 13 (205)
T PRK13582 2 EIVCLDLEGVLV 13 (205)
T ss_pred eEEEEeCCCCCh
Confidence 689999999999
No 52
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=36.73 E-value=18 Score=29.03 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=18.5
Q ss_pred EEEEeeCCcceehhhhhcc---hhhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLN---GTFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLt---GsyA~~~~ 33 (153)
+.+|||||-|||=+-.+-. -..+.+||
T Consensus 3 ~avIFD~DGvLvDse~~~~~a~~~~~~~~g 32 (221)
T COG0637 3 KAVIFDMDGTLVDSEPLHARAWLEALKEYG 32 (221)
T ss_pred cEEEEcCCCCcCcchHHHHHHHHHHHHHcC
Confidence 5789999999996644433 34555565
No 53
>PRK09449 dUMP phosphatase; Provisional
Probab=36.19 E-value=18 Score=27.86 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.7
Q ss_pred EEEEeeCCccee
Q 031776 7 KVFIWDMDETLI 18 (153)
Q Consensus 7 rVFIWDLDETiI 18 (153)
+..|||||-|||
T Consensus 4 k~iiFDlDGTLi 15 (224)
T PRK09449 4 DWILFDADETLF 15 (224)
T ss_pred cEEEEcCCCchh
Confidence 467999999999
No 54
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=35.65 E-value=19 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=20.2
Q ss_pred CceEEEEeeCCcceehhhhhcchhhhh
Q 031776 4 TLTKVFIWDMDETLILLKSLLNGTFAQ 30 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~SLLtGsyA~ 30 (153)
+-+|||.|++||-++++-++.-|-.++
T Consensus 11 ~~~~i~g~t~DE~i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 11 EQPRILGLPLDEFLPGATLFGIGILSG 37 (95)
T ss_pred CCCeEEEeeHHHHHHHHHHHHHHHHHh
Confidence 347899999999988877766555443
No 55
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=32.95 E-value=30 Score=21.47 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=6.5
Q ss_pred EEEEeeCCc
Q 031776 7 KVFIWDMDE 15 (153)
Q Consensus 7 rVFIWDLDE 15 (153)
|++|||.|+
T Consensus 2 rlav~d~~~ 10 (35)
T PF04068_consen 2 RLAVWDFDQ 10 (35)
T ss_dssp EEEEE-CCC
T ss_pred EEEEEEcCC
Confidence 788998876
No 56
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=32.53 E-value=24 Score=29.49 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.9
Q ss_pred EEEEeeCCcceehhhh
Q 031776 7 KVFIWDMDETLILLKS 22 (153)
Q Consensus 7 rVFIWDLDETiIif~S 22 (153)
-..|.|||||++=..-
T Consensus 64 ~aViFDlDgTLlDSs~ 79 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSP 79 (237)
T ss_pred eEEEEeCCCccccCcH
Confidence 3789999999764443
No 57
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=32.02 E-value=22 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=17.9
Q ss_pred eEEEEeeCCcceehhhhhcch---hhhhhhC
Q 031776 6 TKVFIWDMDETLILLKSLLNG---TFAQSFN 33 (153)
Q Consensus 6 erVFIWDLDETiIif~SLLtG---syA~~~~ 33 (153)
-+.+|||||-|||=......- ..++.||
T Consensus 62 ~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G 92 (273)
T PRK13225 62 LQAIIFDFDGTLVDSLPTVVAIANAHAPDFG 92 (273)
T ss_pred cCEEEECCcCccccCHHHHHHHHHHHHHHCC
Confidence 356899999999865433332 3445565
No 58
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=31.73 E-value=29 Score=25.60 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=15.5
Q ss_pred EEeeCCcceehhhhhcchhhh
Q 031776 9 FIWDMDETLILLKSLLNGTFA 29 (153)
Q Consensus 9 FIWDLDETiIif~SLLtGsyA 29 (153)
.|||+|.||+=......-.+.
T Consensus 2 iiFD~DGTL~ds~~~~~~~~~ 22 (185)
T TIGR01990 2 VIFDLDGVITDTAEYHYLAWK 22 (185)
T ss_pred eEEcCCCccccChHHHHHHHH
Confidence 599999999977765544443
No 59
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=31.43 E-value=31 Score=28.36 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.7
Q ss_pred eEEEEeeCCcceehhhhhc
Q 031776 6 TKVFIWDMDETLILLKSLL 24 (153)
Q Consensus 6 erVFIWDLDETiIif~SLL 24 (153)
..+-|.|+|||++ .++-.
T Consensus 72 ~~avv~DIDeTvL-sn~~y 89 (229)
T PF03767_consen 72 PPAVVFDIDETVL-SNSPY 89 (229)
T ss_dssp EEEEEEESBTTTE-EHHHH
T ss_pred CcEEEEECCcccc-cCHHH
Confidence 4678999999987 55443
No 60
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=30.51 E-value=32 Score=28.31 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.2
Q ss_pred CCCceEEEEeeCCcceehhhhhcc
Q 031776 2 DATLTKVFIWDMDETLILLKSLLN 25 (153)
Q Consensus 2 ds~lerVFIWDLDETiIif~SLLt 25 (153)
-|.-+|.|||||..-=|+++++.+
T Consensus 45 pS~~~R~~v~Dl~~~~~l~~~~Va 68 (176)
T PF13645_consen 45 PSGEKRFFVIDLKKGKLLYNTLVA 68 (176)
T ss_pred CCCCCeEEEEECCCCEEEEeeeee
Confidence 366789999999999999998885
No 61
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=29.90 E-value=28 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.8
Q ss_pred eEEEEeeCCcceehhhhhc
Q 031776 6 TKVFIWDMDETLILLKSLL 24 (153)
Q Consensus 6 erVFIWDLDETiIif~SLL 24 (153)
..++|+|+|-||+-..++.
T Consensus 3 ~~~vifDfDgTi~~~d~~~ 21 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII 21 (219)
T ss_pred CcEEEEcCCCCCCcchhhH
Confidence 4589999999999777754
No 62
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=29.36 E-value=37 Score=26.41 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=17.5
Q ss_pred eEEEEeeCCcceehhhhhcchhh
Q 031776 6 TKVFIWDMDETLILLKSLLNGTF 28 (153)
Q Consensus 6 erVFIWDLDETiIif~SLLtGsy 28 (153)
-+..|||+|.||+=++...+..+
T Consensus 7 ~k~iiFD~DGTL~d~~~~~~~a~ 29 (222)
T PRK10826 7 ILAAIFDMDGLLIDSEPLWDRAE 29 (222)
T ss_pred CcEEEEcCCCCCCcCHHHHHHHH
Confidence 35679999999997776666543
No 63
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=28.82 E-value=37 Score=25.98 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.5
Q ss_pred EEEEeeCCcceehhh
Q 031776 7 KVFIWDMDETLILLK 21 (153)
Q Consensus 7 rVFIWDLDETiIif~ 21 (153)
++.|+|||.|++=+.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 478999999999654
No 64
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=27.92 E-value=32 Score=27.58 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.0
Q ss_pred ceEEEEeeCCcceehhhhhc
Q 031776 5 LTKVFIWDMDETLILLKSLL 24 (153)
Q Consensus 5 lerVFIWDLDETiIif~SLL 24 (153)
-+++-++|+|+||+-..|+.
T Consensus 4 ~~~la~FDfDgTLt~~ds~~ 23 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDMFG 23 (210)
T ss_pred cCcEEEEcCCCCCccCccHH
Confidence 46899999999998765554
No 65
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=27.53 E-value=23 Score=29.58 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhcCC
Q 031776 84 DLSDYEFDRDGLCPPFDDLSLKKIAYRHRAIAHKYKEQGS 123 (153)
Q Consensus 84 DLS~Y~F~~dgf~~p~~~~nmRKLAfRyR~Ike~Y~~y~~ 123 (153)
.||||.|.++.=...-+ +..+.|.+++++.|++.|-
T Consensus 7 PlsnY~Fg~ke~~~ekd----~s~~~rl~rl~~~y~~~Gm 42 (188)
T PF13869_consen 7 PLSNYTFGTKEAQPEKD----PSVAARLQRLKENYEKEGM 42 (188)
T ss_dssp BGGGEEEEEES----SS----SSHHHHHHHHHHHHHHHSS
T ss_pred cccceeeccCCcccccc----cCHHHHHHHHHHHHHHhCC
Confidence 47899999864222212 3358899999999999876
No 66
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=27.51 E-value=78 Score=28.76 Aligned_cols=62 Identities=16% Similarity=0.344 Sum_probs=41.3
Q ss_pred CceEEEEeeCCcceehhhhhcchhhhhhhC------------CCCChhhHHHHHHHHHHHHHhhhhhhhhhhhcccCCcc
Q 031776 4 TLTKVFIWDMDETLILLKSLLNGTFAQSFN------------DLKDADKGVQIGRMWENHILNVCDECFFYEQIENNNTP 71 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~SLLtGsyA~~~~------------~~KD~~~~v~LG~rmEemIfnlaD~hfFfndlEecdqv 71 (153)
...|.-..|||+.+| +.+++|.|.+.|. .+..-..|-..|....+-|.+..++ .+|+||.+
T Consensus 58 ~~pRav~iD~Ep~vi--~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~Gy~~g~~~~d~i~d~ir~-----~~E~cd~l 130 (431)
T cd02188 58 YVPRAILIDLEPRVI--NSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEVQEEILDIIDR-----EADGSDSL 130 (431)
T ss_pred cCCcceeccCCcchh--hhhhcCccccccCccceEeeccCCCccccHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCc
Confidence 346777889999875 5777777654443 1122234555677777777777776 78999865
Q ss_pred c
Q 031776 72 F 72 (153)
Q Consensus 72 h 72 (153)
.
T Consensus 131 ~ 131 (431)
T cd02188 131 E 131 (431)
T ss_pred c
Confidence 4
No 67
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=26.84 E-value=34 Score=29.75 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.1
Q ss_pred eEEEEeeCCcceehhh
Q 031776 6 TKVFIWDMDETLILLK 21 (153)
Q Consensus 6 erVFIWDLDETiIif~ 21 (153)
.|++|+|||-|+|.-.
T Consensus 110 ~~LvvfDmDGTLI~~e 125 (322)
T PRK11133 110 PGLLVMDMDSTAIQIE 125 (322)
T ss_pred CCEEEEECCCCCcchH
Confidence 4789999999999443
No 68
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=26.28 E-value=86 Score=16.43 Aligned_cols=26 Identities=8% Similarity=0.294 Sum_probs=16.3
Q ss_pred hhhhhcchhhhhhhCCCCChhhHHHHHHHHH
Q 031776 19 LLKSLLNGTFAQSFNDLKDADKGVQIGRMWE 49 (153)
Q Consensus 19 if~SLLtGsyA~~~~~~KD~~~~v~LG~rmE 49 (153)
.|+++++| |++. +++.++.++=..|.
T Consensus 2 ~~n~li~~-~~~~----~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 2 TYNTLIDG-LCKA----GRVEEALELFKEML 27 (35)
T ss_pred cHHHHHHH-HHHC----CCHHHHHHHHHHHH
Confidence 46677764 5554 78888877644443
No 69
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=25.83 E-value=46 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=16.7
Q ss_pred EEEEeeCCcceehhhhhcch---hhhhhhC
Q 031776 7 KVFIWDMDETLILLKSLLNG---TFAQSFN 33 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtG---syA~~~~ 33 (153)
++.|||+|.||+=..+..+. .+++.++
T Consensus 7 ~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~ 36 (226)
T PRK13222 7 RAVAFDLDGTLVDSAPDLAAAVNAALAALG 36 (226)
T ss_pred cEEEEcCCcccccCHHHHHHHHHHHHHHCC
Confidence 36799999999943333223 3445554
No 70
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.95 E-value=78 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=24.2
Q ss_pred CChhhHHHHHHHHHHHHHhhhhhhhh
Q 031776 36 KDADKGVQIGRMWENHILNVCDECFF 61 (153)
Q Consensus 36 KD~~~~v~LG~rmEemIfnlaD~hfF 61 (153)
++|.++.++..++.+---++|+.|+.
T Consensus 33 ~NPlkAqR~AE~~n~~~~~l~~~~~~ 58 (60)
T PF07026_consen 33 TNPLKAQRLAEELNSKQVNLCDEHLL 58 (60)
T ss_pred cCHHHHHHHHHHHHhhHhhhhhhhcc
Confidence 89999999999999999999999975
No 71
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=24.35 E-value=68 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.5
Q ss_pred eeCCcceehhhhhcchhhhhhhC
Q 031776 11 WDMDETLILLKSLLNGTFAQSFN 33 (153)
Q Consensus 11 WDLDETiIif~SLLtGsyA~~~~ 33 (153)
=|||+||.=|.+.+.--+.+.|+
T Consensus 7 iDiDgVLad~~~~~~~~~n~~~~ 29 (191)
T PF06941_consen 7 IDIDGVLADFNSAFIEWFNEEFG 29 (191)
T ss_dssp EESBTTTB-HHHHHHHHHHHHTT
T ss_pred EECCCCCcccHHHHHHHHHHHcC
Confidence 49999999998877777777886
No 72
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=24.18 E-value=42 Score=29.93 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.8
Q ss_pred CceEEEEeeCCcceehhhh
Q 031776 4 TLTKVFIWDMDETLILLKS 22 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~S 22 (153)
++.+|.+.|||.|+|--+.
T Consensus 126 ~~~~~i~~D~D~TL~~~~~ 144 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE 144 (303)
T ss_pred eeccEEEEecCCCccCCCC
Confidence 4568999999999987755
No 73
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=23.45 E-value=41 Score=23.66 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.0
Q ss_pred EEeeCCcceehhhhh
Q 031776 9 FIWDMDETLILLKSL 23 (153)
Q Consensus 9 FIWDLDETiIif~SL 23 (153)
.|||+|.||+=....
T Consensus 1 iifD~dgtL~d~~~~ 15 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPA 15 (176)
T ss_dssp EEEESBTTTEEHHHH
T ss_pred cEEECCCCcEeCHHH
Confidence 389999999976663
No 74
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=23.09 E-value=48 Score=28.38 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.8
Q ss_pred ceEEEEeeCCccee
Q 031776 5 LTKVFIWDMDETLI 18 (153)
Q Consensus 5 lerVFIWDLDETiI 18 (153)
...+.|-|+|||++
T Consensus 74 kp~AVV~DIDeTvL 87 (266)
T TIGR01533 74 KKYAIVLDLDETVL 87 (266)
T ss_pred CCCEEEEeCccccc
Confidence 45688999999987
No 75
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=22.93 E-value=50 Score=28.66 Aligned_cols=20 Identities=30% Similarity=0.896 Sum_probs=14.8
Q ss_pred CceEEEEeeCCc-----ceehhhhh
Q 031776 4 TLTKVFIWDMDE-----TLILLKSL 23 (153)
Q Consensus 4 ~lerVFIWDLDE-----TiIif~SL 23 (153)
.+--|+.||+|+ .+++++--
T Consensus 116 GvSSVYlWd~d~~~gFag~vLiKK~ 140 (242)
T PF01115_consen 116 GVSSVYLWDLDDDDGFAGVVLIKKE 140 (242)
T ss_dssp SEEEEEEEEETT--EEEEEEEEEEE
T ss_pred CeeEEEEEecCCCcceeEEEEEEec
Confidence 566899999999 46666544
No 76
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=22.28 E-value=47 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHh---hcCCccceeeec
Q 031776 102 LSLKKIAYRHRAIAHKYK---EQGSYWSSVQVG 131 (153)
Q Consensus 102 ~nmRKLAfRyR~Ike~Y~---~y~~n~~~~~~~ 131 (153)
+-.-|...|-+.|++-|+ .-+.||+-++-|
T Consensus 206 av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~ 238 (275)
T TIGR01680 206 AVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGE 238 (275)
T ss_pred hHHHHHHHHHHHHHcCceEEEEECCCHHhccCC
Confidence 345688888888887665 357788877655
No 77
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=22.12 E-value=57 Score=24.41 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=11.2
Q ss_pred EEEeeCCcceehhh
Q 031776 8 VFIWDMDETLILLK 21 (153)
Q Consensus 8 VFIWDLDETiIif~ 21 (153)
+-|-|||||||--.
T Consensus 4 ~lvldld~tl~~~~ 17 (148)
T smart00577 4 TLVLDLDETLVHST 17 (148)
T ss_pred EEEEeCCCCeECCC
Confidence 55789999998654
No 78
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=22.01 E-value=20 Score=27.48 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=15.0
Q ss_pred cceehhhhhcchhhhhhhC-CCCChh
Q 031776 15 ETLILLKSLLNGTFAQSFN-DLKDAD 39 (153)
Q Consensus 15 ETiIif~SLLtGsyA~~~~-~~KD~~ 39 (153)
||+|||.|+|. |..+|+ .+.||-
T Consensus 46 ET~vilds~Lg--~v~~~Dk~~~D~i 69 (103)
T PF08994_consen 46 ETFVILDSFLG--FVDKFDKVLTDPI 69 (103)
T ss_dssp HHHHHHHHHH---HHHHHHHH---HH
T ss_pred hHHHHHHHHHh--hHHhhhhhccchh
Confidence 89999999995 777776 445553
No 79
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=21.95 E-value=84 Score=21.35 Aligned_cols=38 Identities=11% Similarity=0.311 Sum_probs=25.1
Q ss_pred EEEEeeCCcceehhhhhcchhhhhhhCCCCChhhHHHHHHHHHHHHHh
Q 031776 7 KVFIWDMDETLILLKSLLNGTFAQSFNDLKDADKGVQIGRMWENHILN 54 (153)
Q Consensus 7 rVFIWDLDETiIif~SLLtGsyA~~~~~~KD~~~~v~LG~rmEemIfn 54 (153)
+..|++.|-+-++++.-.+ .++..+.+||+.+.+.+.+
T Consensus 37 ~~~v~~~dG~~~~~~~~~~----------~~~~~a~~lg~~la~~l~~ 74 (74)
T PF03900_consen 37 RAMVGSPDGSRIIIRVEIT----------GPIEDAEELGKKLAEELLA 74 (74)
T ss_dssp EEEEE-TTSSSEEEEEEEE----------E-GGGHCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEEEE----------cCHHHHHHHHHHHHHHHhC
Confidence 4567777777756665555 3667778888888877653
No 80
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.75 E-value=55 Score=29.19 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.6
Q ss_pred CceEEEEeeCCcceehhhh
Q 031776 4 TLTKVFIWDMDETLILLKS 22 (153)
Q Consensus 4 ~lerVFIWDLDETiIif~S 22 (153)
+...|.+.|||-|||--..
T Consensus 124 ~~~kvIvFDLDgTLi~~~~ 142 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE 142 (301)
T ss_pred ccceEEEEecCCCCcCCCC
Confidence 4567999999999987654
No 81
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=21.69 E-value=38 Score=30.07 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=12.8
Q ss_pred EEEEeeCCcceehhhhh
Q 031776 7 KVFIWDMDETLILLKSL 23 (153)
Q Consensus 7 rVFIWDLDETiIif~SL 23 (153)
+..|||||-|||=.-.+
T Consensus 242 k~vIFDlDGTLiDs~~~ 258 (459)
T PRK06698 242 QALIFDMDGTLFQTDKI 258 (459)
T ss_pred hheeEccCCceecchhH
Confidence 46799999999944433
No 82
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.29 E-value=64 Score=28.82 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcCCccceeeeccc
Q 031776 105 KKIAYRHRAIAHKYKEQGSYWSSVQVGRK 133 (153)
Q Consensus 105 RKLAfRyR~Ike~Y~~y~~n~~~~~~~~~ 133 (153)
-.|..||-.|+++...|. --|||||||.
T Consensus 254 SElhVRHVaIEQLlKn~s-klP~Lq~~r~ 281 (285)
T PF06937_consen 254 SELHVRHVAIEQLLKNCS-KLPCLQVGRA 281 (285)
T ss_pred HHHHHHHHHHHHHHHhhc-cCchhhhccc
Confidence 668899999999999885 4789999995
No 83
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.28 E-value=60 Score=24.72 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.5
Q ss_pred eEEEEeeCCcceehhhhhc
Q 031776 6 TKVFIWDMDETLILLKSLL 24 (153)
Q Consensus 6 erVFIWDLDETiIif~SLL 24 (153)
.+..++|+|.||+=+++-.
T Consensus 4 ~k~i~FD~d~TL~d~~~~~ 22 (229)
T COG1011 4 IKAILFDLDGTLLDFDSAE 22 (229)
T ss_pred eeEEEEecCCcccccchHH
Confidence 4678899999999988743
No 84
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=20.69 E-value=60 Score=25.02 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.3
Q ss_pred EEEEeeCCcceehhh
Q 031776 7 KVFIWDMDETLILLK 21 (153)
Q Consensus 7 rVFIWDLDETiIif~ 21 (153)
+++++|||-|+.=-+
T Consensus 4 kli~~DlDGTLl~~~ 18 (230)
T PRK01158 4 KAIAIDIDGTITDKD 18 (230)
T ss_pred eEEEEecCCCcCCCC
Confidence 688999999998433
Done!