Query 031777
Match_columns 153
No_of_seqs 104 out of 1465
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 7.4E-43 1.6E-47 225.3 16.1 152 1-153 2-154 (205)
2 KOG0078 GTP-binding protein SE 100.0 3.2E-39 6.9E-44 211.1 16.6 149 4-153 8-156 (207)
3 KOG0098 GTPase Rab2, small G p 100.0 1E-38 2.3E-43 204.3 14.8 149 4-153 2-150 (216)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 1.3E-37 2.9E-42 200.3 15.8 147 6-153 3-149 (200)
5 cd04121 Rab40 Rab40 subfamily. 100.0 1.3E-36 2.7E-41 202.7 18.3 148 4-153 2-149 (189)
6 cd04120 Rab12 Rab12 subfamily. 100.0 2.6E-36 5.6E-41 203.0 17.9 145 9-153 1-145 (202)
7 KOG0093 GTPase Rab3, small G p 100.0 5.8E-37 1.3E-41 189.5 13.4 151 2-153 15-165 (193)
8 KOG0080 GTPase Rab18, small G 100.0 2.5E-36 5.5E-41 189.2 14.4 150 3-153 6-156 (209)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 2.7E-36 5.8E-41 196.9 14.9 151 2-153 8-158 (222)
10 KOG0079 GTP-binding protein H- 100.0 5.6E-37 1.2E-41 189.8 11.0 151 1-153 1-151 (198)
11 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.4E-36 1.2E-40 193.2 15.3 146 7-153 21-167 (221)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.5E-35 5.4E-40 195.6 18.1 146 5-153 2-161 (182)
13 KOG0394 Ras-related GTPase [Ge 100.0 6.7E-36 1.4E-40 191.1 13.8 153 1-153 1-160 (210)
14 cd04133 Rop_like Rop subfamily 100.0 1.1E-34 2.4E-39 191.5 18.4 142 9-153 2-155 (176)
15 cd04122 Rab14 Rab14 subfamily. 100.0 8.2E-35 1.8E-39 190.8 17.5 145 8-153 2-146 (166)
16 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-34 2.6E-39 191.9 18.0 143 8-153 1-157 (178)
17 KOG0086 GTPase Rab4, small G p 100.0 1.1E-35 2.4E-40 185.1 11.5 152 1-153 2-153 (214)
18 cd04117 Rab15 Rab15 subfamily. 100.0 4.3E-34 9.2E-39 186.6 17.8 144 9-153 1-144 (161)
19 cd01867 Rab8_Rab10_Rab13_like 100.0 3.5E-34 7.5E-39 188.0 17.3 147 6-153 1-147 (167)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7E-34 1.5E-38 194.3 18.5 145 6-153 11-169 (232)
21 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-33 2.5E-38 185.2 17.8 144 9-153 2-145 (165)
22 KOG0095 GTPase Rab30, small G 100.0 9.4E-35 2E-39 180.4 11.9 149 4-153 3-151 (213)
23 PF00071 Ras: Ras family; Int 100.0 6.4E-34 1.4E-38 185.7 16.1 143 10-153 1-143 (162)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.1E-33 2.5E-38 186.4 16.7 144 8-153 2-146 (172)
25 cd01875 RhoG RhoG subfamily. 100.0 2.1E-33 4.5E-38 188.0 18.1 144 8-153 3-159 (191)
26 cd01864 Rab19 Rab19 subfamily. 100.0 2E-33 4.4E-38 183.9 17.6 148 6-153 1-148 (165)
27 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.5E-33 5.4E-38 185.2 18.0 143 9-153 2-157 (175)
28 cd04127 Rab27A Rab27a subfamil 100.0 2.7E-33 5.9E-38 185.7 17.2 147 6-153 2-159 (180)
29 cd01868 Rab11_like Rab11-like. 100.0 3.9E-33 8.4E-38 182.5 17.4 146 7-153 2-147 (165)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.1E-33 8.9E-38 182.6 17.4 145 8-153 2-146 (166)
31 PLN03110 Rab GTPase; Provision 100.0 4.8E-33 1E-37 189.4 18.2 149 4-153 8-156 (216)
32 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.1E-33 1.1E-37 187.5 17.9 144 9-153 1-150 (201)
33 cd01866 Rab2 Rab2 subfamily. 100.0 7.4E-33 1.6E-37 181.8 17.8 147 6-153 2-148 (168)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.1E-33 1.1E-37 189.2 17.4 143 9-153 2-157 (222)
35 cd04113 Rab4 Rab4 subfamily. 100.0 7.8E-33 1.7E-37 180.4 17.1 144 9-153 1-144 (161)
36 cd04119 RJL RJL (RabJ-Like) su 100.0 8E-33 1.7E-37 181.1 16.9 144 9-153 1-149 (168)
37 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1E-32 2.3E-37 181.5 17.2 145 8-153 2-148 (170)
38 cd04125 RabA_like RabA-like su 100.0 1.5E-32 3.3E-37 183.4 17.9 144 9-153 1-144 (188)
39 cd04110 Rab35 Rab35 subfamily. 100.0 1.6E-32 3.5E-37 184.8 18.1 147 5-153 3-149 (199)
40 cd01871 Rac1_like Rac1-like su 100.0 1.8E-32 4E-37 180.9 17.8 143 9-153 2-157 (174)
41 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-32 3.1E-37 182.5 16.8 143 9-153 1-148 (182)
42 cd04106 Rab23_lke Rab23-like s 100.0 1.9E-32 4.2E-37 178.6 16.9 143 9-153 1-145 (162)
43 cd04109 Rab28 Rab28 subfamily. 100.0 2E-32 4.4E-37 186.3 17.5 144 9-153 1-148 (215)
44 cd04136 Rap_like Rap-like subf 100.0 2.2E-32 4.7E-37 178.5 16.9 143 9-153 2-145 (163)
45 cd04116 Rab9 Rab9 subfamily. 100.0 4E-32 8.7E-37 178.5 18.3 148 5-153 2-153 (170)
46 cd04112 Rab26 Rab26 subfamily. 100.0 2.4E-32 5.2E-37 182.9 17.0 144 9-153 1-145 (191)
47 PLN03071 GTP-binding nuclear p 100.0 5.6E-32 1.2E-36 184.5 18.1 144 6-153 11-154 (219)
48 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5E-32 1.1E-36 178.2 17.2 143 10-153 2-147 (170)
49 KOG0091 GTPase Rab39, small G 100.0 1.9E-33 4.1E-38 176.8 9.6 152 1-153 1-155 (213)
50 cd04111 Rab39 Rab39 subfamily. 100.0 5.2E-32 1.1E-36 183.7 17.5 146 7-153 1-148 (211)
51 PTZ00369 Ras-like protein; Pro 100.0 5.9E-32 1.3E-36 180.7 17.2 145 7-153 4-149 (189)
52 smart00175 RAB Rab subfamily o 100.0 7.2E-32 1.6E-36 176.1 17.2 144 9-153 1-144 (164)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 5.4E-32 1.2E-36 177.0 16.6 143 9-153 2-145 (164)
54 cd04176 Rap2 Rap2 subgroup. T 100.0 6.2E-32 1.4E-36 176.5 16.9 143 9-153 2-145 (163)
55 PLN03108 Rab family protein; P 100.0 8.5E-32 1.8E-36 182.6 17.9 148 5-153 3-150 (210)
56 cd04140 ARHI_like ARHI subfami 100.0 9E-32 1.9E-36 176.2 17.0 143 9-153 2-147 (165)
57 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-31 2.4E-36 174.9 17.3 144 9-153 1-144 (161)
58 cd04144 Ras2 Ras2 subfamily. 100.0 4.5E-32 9.6E-37 181.4 15.5 142 10-153 1-145 (190)
59 cd04134 Rho3 Rho3 subfamily. 100.0 1.7E-31 3.6E-36 178.5 18.0 143 9-153 1-156 (189)
60 cd04126 Rab20 Rab20 subfamily. 100.0 1.1E-31 2.4E-36 182.5 16.8 140 9-153 1-172 (220)
61 cd00877 Ran Ran (Ras-related n 100.0 2.6E-31 5.6E-36 174.3 17.8 141 9-153 1-141 (166)
62 cd04142 RRP22 RRP22 subfamily. 100.0 2.3E-31 5.1E-36 178.8 17.3 145 9-153 1-156 (198)
63 smart00173 RAS Ras subfamily o 100.0 2.9E-31 6.2E-36 173.5 16.4 143 9-153 1-144 (164)
64 cd01860 Rab5_related Rab5-rela 100.0 4.7E-31 1E-35 172.2 17.3 144 9-153 2-145 (163)
65 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.3E-31 1.1E-35 172.2 17.0 143 9-153 1-146 (164)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.3E-31 1.2E-35 172.0 17.0 144 8-153 2-146 (164)
67 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.5E-31 2.1E-35 172.6 17.9 143 9-153 1-156 (173)
68 cd04103 Centaurin_gamma Centau 100.0 7E-31 1.5E-35 170.9 16.5 138 9-153 1-141 (158)
69 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-30 2.4E-35 170.4 17.5 140 9-153 1-140 (161)
70 cd01873 RhoBTB RhoBTB subfamil 100.0 1E-30 2.2E-35 175.2 17.7 142 8-153 2-178 (195)
71 cd04114 Rab30 Rab30 subfamily. 100.0 2E-30 4.3E-35 170.2 18.6 151 1-153 1-151 (169)
72 KOG0097 GTPase Rab14, small G 100.0 9.3E-32 2E-36 165.9 11.3 149 4-153 7-155 (215)
73 cd04132 Rho4_like Rho4-like su 100.0 1.1E-30 2.5E-35 174.1 17.2 142 9-153 1-149 (187)
74 cd04146 RERG_RasL11_like RERG/ 100.0 4.1E-31 8.8E-36 173.0 14.8 142 10-153 1-145 (165)
75 cd04143 Rhes_like Rhes_like su 100.0 6.3E-31 1.4E-35 181.8 16.4 144 9-153 1-153 (247)
76 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.3E-30 2.7E-35 169.8 16.9 142 9-153 2-144 (162)
77 smart00176 RAN Ran (Ras-relate 100.0 8.1E-31 1.8E-35 176.1 16.3 136 14-153 1-136 (200)
78 KOG0081 GTPase Rab27, small G 100.0 2.8E-33 6.1E-38 175.4 3.9 150 3-153 4-163 (219)
79 cd04123 Rab21 Rab21 subfamily. 100.0 2.1E-30 4.5E-35 168.7 17.4 144 9-153 1-144 (162)
80 smart00174 RHO Rho (Ras homolo 100.0 1.7E-30 3.7E-35 171.4 17.1 141 11-153 1-154 (174)
81 cd04135 Tc10 TC10 subfamily. 100.0 3.4E-30 7.5E-35 169.9 18.1 143 9-153 1-156 (174)
82 cd01863 Rab18 Rab18 subfamily. 100.0 3.5E-30 7.6E-35 167.8 17.7 143 9-153 1-144 (161)
83 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.2E-30 4.9E-35 174.0 16.5 143 9-152 1-171 (202)
84 PLN03118 Rab family protein; P 100.0 5.5E-30 1.2E-34 173.9 18.3 149 3-153 9-159 (211)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 5.1E-30 1.1E-34 168.3 17.3 144 9-153 2-146 (168)
86 cd04118 Rab24 Rab24 subfamily. 100.0 6.7E-30 1.5E-34 171.2 18.2 143 9-153 1-148 (193)
87 KOG0088 GTPase Rab21, small G 100.0 1.5E-31 3.3E-36 167.5 8.5 149 4-153 9-157 (218)
88 cd01892 Miro2 Miro2 subfamily. 100.0 3.5E-30 7.6E-35 169.3 15.5 145 6-153 2-148 (169)
89 cd01862 Rab7 Rab7 subfamily. 100.0 8.4E-30 1.8E-34 167.6 17.2 145 9-153 1-149 (172)
90 cd00154 Rab Rab family. Rab G 100.0 1.2E-29 2.6E-34 164.2 16.9 144 9-153 1-144 (159)
91 cd04148 RGK RGK subfamily. Th 100.0 9.9E-30 2.1E-34 173.6 16.9 142 9-153 1-145 (221)
92 KOG0395 Ras-related GTPase [Ge 100.0 8.2E-30 1.8E-34 170.2 13.8 145 7-153 2-147 (196)
93 PLN00023 GTP-binding protein; 100.0 3.5E-29 7.6E-34 176.2 17.3 140 6-146 19-189 (334)
94 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.3E-30 9.2E-35 168.2 10.5 138 10-153 1-142 (164)
95 cd01870 RhoA_like RhoA-like su 100.0 1.8E-28 4E-33 161.8 17.7 143 9-153 2-157 (175)
96 KOG0393 Ras-related small GTPa 100.0 1.1E-29 2.3E-34 166.9 11.3 145 7-153 3-161 (198)
97 cd00876 Ras Ras family. The R 100.0 2E-28 4.3E-33 159.1 15.6 142 10-153 1-143 (160)
98 cd04129 Rho2 Rho2 subfamily. 100.0 6.3E-28 1.4E-32 161.0 17.7 143 9-153 2-155 (187)
99 KOG0083 GTPase Rab26/Rab37, sm 100.0 9.1E-31 2E-35 159.8 3.4 140 13-153 2-142 (192)
100 cd04139 RalA_RalB RalA/RalB su 100.0 6.5E-28 1.4E-32 157.3 16.4 143 9-153 1-144 (164)
101 cd01893 Miro1 Miro1 subfamily. 100.0 7.4E-28 1.6E-32 157.8 15.7 142 9-153 1-146 (166)
102 cd00157 Rho Rho (Ras homology) 100.0 2.3E-27 4.9E-32 155.8 17.5 143 9-153 1-155 (171)
103 cd04147 Ras_dva Ras-dva subfam 100.0 1.1E-27 2.3E-32 161.2 16.1 143 10-153 1-145 (198)
104 cd04137 RheB Rheb (Ras Homolog 100.0 1.1E-27 2.4E-32 158.8 15.8 143 9-153 2-145 (180)
105 PTZ00132 GTP-binding nuclear p 100.0 4.6E-27 9.9E-32 160.0 18.1 146 4-153 5-150 (215)
106 cd04149 Arf6 Arf6 subfamily. 100.0 7.9E-28 1.7E-32 158.0 13.4 140 7-153 8-152 (168)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8E-28 1.7E-32 156.7 10.7 138 9-153 1-143 (159)
108 cd04154 Arl2 Arl2 subfamily. 100.0 5.9E-27 1.3E-31 154.5 14.8 141 6-153 12-157 (173)
109 cd04158 ARD1 ARD1 subfamily. 100.0 7.6E-27 1.6E-31 153.4 14.9 137 10-153 1-143 (169)
110 smart00177 ARF ARF-like small 100.0 1.3E-27 2.9E-32 157.9 11.3 140 7-153 12-156 (175)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 8.5E-27 1.9E-31 155.1 14.6 143 8-153 3-152 (183)
112 PLN00223 ADP-ribosylation fact 100.0 1E-26 2.2E-31 154.4 14.8 140 7-153 16-160 (181)
113 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.3E-27 1.1E-31 154.0 11.2 139 10-153 1-145 (167)
114 PTZ00133 ADP-ribosylation fact 99.9 8.2E-27 1.8E-31 155.0 10.9 139 7-153 16-160 (182)
115 cd04157 Arl6 Arl6 subfamily. 99.9 2.9E-26 6.3E-31 149.4 11.6 138 10-153 1-146 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.8E-25 6E-30 146.7 14.3 138 8-153 15-158 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.3E-25 2.9E-30 146.1 12.1 137 10-153 1-144 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.4E-25 5.1E-30 145.8 13.1 138 10-153 1-151 (167)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-25 2.8E-30 145.9 11.6 137 10-153 1-142 (158)
120 cd00879 Sar1 Sar1 subfamily. 99.9 4.1E-25 8.8E-30 147.7 13.9 140 7-153 18-173 (190)
121 PF00025 Arf: ADP-ribosylation 99.9 1.5E-24 3.2E-29 143.3 15.8 142 5-153 11-158 (175)
122 PTZ00099 rab6; Provisional 99.9 1.2E-24 2.6E-29 143.7 14.7 122 31-153 3-124 (176)
123 KOG4252 GTP-binding protein [S 99.9 1.9E-27 4.2E-32 152.0 1.3 148 4-153 16-163 (246)
124 cd04151 Arl1 Arl1 subfamily. 99.9 3E-25 6.6E-30 144.2 11.0 137 10-153 1-142 (158)
125 smart00178 SAR Sar1p-like memb 99.9 2E-24 4.3E-29 143.8 13.8 141 6-153 15-167 (184)
126 PF08477 Miro: Miro-like prote 99.9 8.3E-25 1.8E-29 135.9 11.1 114 10-124 1-119 (119)
127 TIGR00231 small_GTP small GTP- 99.9 6.5E-24 1.4E-28 137.0 15.2 143 9-153 2-146 (161)
128 KOG0073 GTP-binding ADP-ribosy 99.9 2.5E-24 5.4E-29 135.6 11.8 141 5-153 13-160 (185)
129 COG1100 GTPase SAR1 and relate 99.9 8E-24 1.7E-28 144.3 15.1 122 8-129 5-127 (219)
130 cd01897 NOG NOG1 is a nucleola 99.9 7E-24 1.5E-28 139.0 13.4 139 9-153 1-150 (168)
131 cd04159 Arl10_like Arl10-like 99.9 3.4E-24 7.5E-29 138.6 10.8 138 10-153 1-143 (159)
132 cd01898 Obg Obg subfamily. Th 99.9 1.3E-23 2.8E-28 137.9 12.2 142 10-153 2-153 (170)
133 cd01878 HflX HflX subfamily. 99.9 1.9E-23 4.2E-28 141.1 11.9 141 5-153 38-187 (204)
134 cd01890 LepA LepA subfamily. 99.9 5.1E-23 1.1E-27 136.2 12.8 138 9-153 1-159 (179)
135 cd04171 SelB SelB subfamily. 99.9 5.2E-23 1.1E-27 134.1 12.7 137 10-153 2-148 (164)
136 cd00882 Ras_like_GTPase Ras-li 99.9 2E-22 4.3E-27 128.9 13.9 139 13-153 1-142 (157)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 1.4E-22 3.1E-27 145.3 14.1 143 9-153 159-310 (335)
138 KOG0070 GTP-binding ADP-ribosy 99.9 4.7E-23 1E-27 132.7 9.9 118 6-128 15-133 (181)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 8E-23 1.7E-27 137.1 11.0 142 8-153 2-164 (194)
140 TIGR02528 EutP ethanolamine ut 99.9 6.4E-23 1.4E-27 131.1 9.3 121 10-153 2-127 (142)
141 cd04155 Arl3 Arl3 subfamily. 99.9 1.1E-21 2.4E-26 129.2 14.6 117 6-127 12-129 (173)
142 cd01879 FeoB Ferrous iron tran 99.9 3.6E-22 7.8E-27 129.5 11.6 131 13-153 1-139 (158)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.5E-22 1.9E-26 128.9 11.6 115 10-128 2-117 (168)
144 TIGR03156 GTP_HflX GTP-binding 99.9 2.1E-21 4.7E-26 140.2 13.4 139 6-153 187-334 (351)
145 KOG3883 Ras family small GTPas 99.9 5.2E-21 1.1E-25 119.6 13.2 146 6-153 7-157 (198)
146 cd01881 Obg_like The Obg-like 99.9 1.1E-21 2.4E-26 129.3 10.9 138 13-153 1-159 (176)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3E-21 6.4E-26 143.1 14.3 133 7-153 202-343 (442)
148 PRK04213 GTP-binding protein; 99.9 8.8E-22 1.9E-26 132.7 9.1 137 7-153 8-175 (201)
149 cd04105 SR_beta Signal recogni 99.9 4E-21 8.7E-26 129.7 12.3 117 10-127 2-123 (203)
150 KOG1673 Ras GTPases [General f 99.9 1.7E-21 3.7E-26 122.1 8.6 144 8-153 20-168 (205)
151 TIGR02729 Obg_CgtA Obg family 99.9 8.1E-21 1.8E-25 136.2 13.1 142 9-153 158-311 (329)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.4E-20 3E-25 121.6 12.6 129 9-153 2-139 (157)
153 TIGR03598 GTPase_YsxC ribosome 99.9 9.2E-21 2E-25 125.6 11.7 142 5-153 15-172 (179)
154 PF02421 FeoB_N: Ferrous iron 99.9 2.8E-21 6.1E-26 124.1 8.6 135 9-153 1-143 (156)
155 KOG0075 GTP-binding ADP-ribosy 99.8 6E-22 1.3E-26 122.9 3.8 116 8-127 20-136 (186)
156 cd01895 EngA2 EngA2 subfamily. 99.8 1E-19 2.2E-24 119.3 14.0 140 8-153 2-157 (174)
157 PRK05291 trmE tRNA modificatio 99.8 2.1E-20 4.5E-25 139.2 11.8 129 8-153 215-352 (449)
158 TIGR00487 IF-2 translation ini 99.8 6.5E-20 1.4E-24 139.8 14.5 139 7-153 86-232 (587)
159 TIGR00436 era GTP-binding prot 99.8 4.7E-20 1E-24 129.5 12.7 136 10-153 2-146 (270)
160 KOG0071 GTP-binding ADP-ribosy 99.8 1.6E-20 3.5E-25 115.8 9.0 125 8-139 17-142 (180)
161 cd01889 SelB_euk SelB subfamil 99.8 2.8E-20 6E-25 124.6 10.8 141 9-153 1-168 (192)
162 cd00881 GTP_translation_factor 99.8 4.3E-20 9.3E-25 122.9 11.5 138 10-153 1-169 (189)
163 PRK03003 GTP-binding protein D 99.8 2.7E-20 5.8E-25 139.7 11.5 141 7-153 210-364 (472)
164 TIGR01393 lepA GTP-binding pro 99.8 8.4E-20 1.8E-24 139.7 13.9 140 7-153 2-162 (595)
165 KOG0074 GTP-binding ADP-ribosy 99.8 4.5E-20 9.8E-25 114.0 9.9 120 4-127 13-133 (185)
166 TIGR00475 selB selenocysteine- 99.8 9.3E-20 2E-24 139.3 13.7 136 9-153 1-148 (581)
167 PRK15494 era GTPase Era; Provi 99.8 2.7E-19 5.8E-24 129.1 14.0 138 6-153 50-198 (339)
168 PRK03003 GTP-binding protein D 99.8 1.8E-19 3.9E-24 135.2 13.6 115 7-127 37-160 (472)
169 PRK12297 obgE GTPase CgtA; Rev 99.8 4E-19 8.6E-24 130.7 15.0 139 9-153 159-309 (424)
170 PRK11058 GTPase HflX; Provisio 99.8 2.7E-19 5.9E-24 132.1 13.6 119 8-127 197-323 (426)
171 TIGR00483 EF-1_alpha translati 99.8 2.4E-19 5.1E-24 133.2 12.8 148 1-153 1-189 (426)
172 PRK05306 infB translation init 99.8 4.6E-19 9.9E-24 138.3 14.7 139 6-153 288-434 (787)
173 cd01894 EngA1 EngA1 subfamily. 99.8 2.1E-19 4.5E-24 116.2 10.7 130 12-153 1-140 (157)
174 cd04163 Era Era subfamily. Er 99.8 6E-19 1.3E-23 114.8 12.8 141 8-153 3-151 (168)
175 TIGR03594 GTPase_EngA ribosome 99.8 1E-18 2.3E-23 130.0 15.3 141 6-153 170-326 (429)
176 PRK00089 era GTPase Era; Revie 99.8 4.6E-19 1E-23 125.8 12.5 141 8-153 5-153 (292)
177 PRK12296 obgE GTPase CgtA; Rev 99.8 3.8E-19 8.3E-24 132.5 12.3 142 8-153 159-322 (500)
178 CHL00189 infB translation init 99.8 3.8E-19 8.3E-24 137.7 12.7 141 6-153 242-392 (742)
179 TIGR00437 feoB ferrous iron tr 99.8 3.8E-19 8.3E-24 136.1 12.0 129 15-153 1-137 (591)
180 PRK15467 ethanolamine utilizat 99.8 3.4E-19 7.4E-24 115.9 9.9 121 10-153 3-129 (158)
181 PRK00454 engB GTP-binding prot 99.8 6.8E-19 1.5E-23 118.0 11.3 141 5-153 21-176 (196)
182 KOG1707 Predicted Ras related/ 99.8 1.8E-19 4E-24 133.3 9.0 149 3-153 4-157 (625)
183 PRK09554 feoB ferrous iron tra 99.8 1.9E-18 4.1E-23 135.2 14.9 136 8-153 3-150 (772)
184 PRK00093 GTP-binding protein D 99.8 1.2E-18 2.5E-23 129.9 12.9 131 9-153 2-144 (435)
185 cd01888 eIF2_gamma eIF2-gamma 99.8 8.3E-19 1.8E-23 118.4 10.3 143 9-153 1-181 (203)
186 PRK12317 elongation factor 1-a 99.8 2E-18 4.4E-23 128.2 13.2 144 6-153 4-187 (425)
187 PRK05433 GTP-binding protein L 99.8 1.8E-18 3.9E-23 132.5 13.1 141 6-153 5-166 (600)
188 PRK12298 obgE GTPase CgtA; Rev 99.8 2.7E-18 5.8E-23 125.6 13.3 143 9-153 160-315 (390)
189 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 9.7E-19 2.1E-23 113.0 9.5 143 7-153 9-151 (216)
190 cd01850 CDC_Septin CDC/Septin. 99.8 1.8E-17 3.9E-22 116.5 15.9 140 7-151 3-182 (276)
191 cd00880 Era_like Era (E. coli 99.8 2.3E-18 4.9E-23 111.0 10.6 135 13-153 1-146 (163)
192 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-18 7.8E-23 115.8 11.6 139 10-153 1-176 (208)
193 COG2229 Predicted GTPase [Gene 99.8 1.4E-17 2.9E-22 107.5 13.3 141 5-153 7-160 (187)
194 TIGR00491 aIF-2 translation in 99.8 1.1E-18 2.5E-23 132.9 9.7 113 8-127 4-135 (590)
195 cd01885 EF2 EF2 (for archaea a 99.8 4.4E-18 9.5E-23 115.9 11.2 123 9-135 1-148 (222)
196 PF00009 GTP_EFTU: Elongation 99.8 2.8E-18 6.2E-23 114.6 10.0 143 7-153 2-169 (188)
197 PRK00093 GTP-binding protein D 99.8 1.2E-17 2.6E-22 124.6 14.3 141 7-153 172-326 (435)
198 TIGR03594 GTPase_EngA ribosome 99.8 6.4E-18 1.4E-22 125.8 12.9 132 10-153 1-142 (429)
199 COG1159 Era GTPase [General fu 99.8 3.8E-18 8.3E-23 118.0 10.7 142 7-153 5-154 (298)
200 KOG0076 GTP-binding ADP-ribosy 99.8 6.6E-19 1.4E-23 112.3 5.4 118 7-128 16-141 (197)
201 PRK10218 GTP-binding protein; 99.8 2.5E-17 5.3E-22 126.1 14.1 143 7-153 4-167 (607)
202 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.3E-17 2.9E-22 113.7 10.7 116 10-127 1-125 (232)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.9E-17 4.2E-22 126.6 12.2 139 9-153 2-163 (594)
204 PRK09518 bifunctional cytidyla 99.7 1.6E-17 3.6E-22 129.9 11.9 115 7-127 449-575 (712)
205 cd01896 DRG The developmentall 99.7 9E-17 1.9E-21 110.6 14.1 83 10-94 2-91 (233)
206 KOG0077 Vesicle coat complex C 99.7 6.2E-18 1.3E-22 107.2 7.6 123 8-137 20-143 (193)
207 PRK09518 bifunctional cytidyla 99.7 9.1E-17 2E-21 125.8 15.0 115 7-127 274-397 (712)
208 KOG0072 GTP-binding ADP-ribosy 99.7 2E-18 4.3E-23 107.0 4.4 141 7-153 17-161 (182)
209 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.3E-17 2E-21 107.6 12.7 140 8-153 2-165 (195)
210 cd04168 TetM_like Tet(M)-like 99.7 1E-16 2.3E-21 110.4 13.3 112 10-127 1-130 (237)
211 cd04167 Snu114p Snu114p subfam 99.7 6.5E-17 1.4E-21 110.0 12.2 113 10-126 2-136 (213)
212 cd01883 EF1_alpha Eukaryotic e 99.7 3.3E-17 7.1E-22 111.9 10.3 140 10-153 1-187 (219)
213 cd01886 EF-G Elongation factor 99.7 7E-17 1.5E-21 113.2 12.0 112 10-127 1-130 (270)
214 cd04169 RF3 RF3 subfamily. Pe 99.7 1.4E-16 3.1E-21 111.5 13.5 116 8-127 2-137 (267)
215 PRK04004 translation initiatio 99.7 3.6E-17 7.9E-22 125.1 11.3 113 7-126 5-136 (586)
216 TIGR00485 EF-Tu translation el 99.7 1.1E-16 2.3E-21 117.9 12.8 143 5-153 9-175 (394)
217 cd01876 YihA_EngB The YihA (En 99.7 8.3E-17 1.8E-21 104.9 10.4 135 10-153 1-153 (170)
218 COG1084 Predicted GTPase [Gene 99.7 2E-16 4.4E-21 110.6 12.0 125 7-135 167-302 (346)
219 PRK04000 translation initiatio 99.7 9.3E-17 2E-21 118.6 10.7 149 3-153 4-183 (411)
220 PF01926 MMR_HSR1: 50S ribosom 99.7 3.3E-16 7.1E-21 96.8 11.6 106 10-122 1-116 (116)
221 TIGR03680 eif2g_arch translati 99.7 9.6E-17 2.1E-21 118.5 10.1 145 7-153 3-178 (406)
222 cd04170 EF-G_bact Elongation f 99.7 2.5E-16 5.4E-21 110.6 11.7 113 10-128 1-131 (268)
223 PRK12735 elongation factor Tu; 99.7 4.3E-16 9.3E-21 114.8 13.2 144 4-153 8-175 (396)
224 PRK10512 selenocysteinyl-tRNA- 99.7 3.9E-16 8.4E-21 120.0 13.4 139 10-153 2-148 (614)
225 PRK12736 elongation factor Tu; 99.7 6.9E-16 1.5E-20 113.6 12.9 142 6-153 10-175 (394)
226 KOG4423 GTP-binding protein-li 99.7 3.1E-19 6.8E-24 115.0 -4.2 147 6-153 23-176 (229)
227 PLN00043 elongation factor 1-a 99.7 8.6E-16 1.9E-20 114.4 13.3 146 1-153 1-195 (447)
228 CHL00071 tufA elongation facto 99.7 1.6E-15 3.6E-20 112.1 13.5 143 5-153 9-175 (409)
229 TIGR00503 prfC peptide chain r 99.7 1.3E-15 2.9E-20 115.3 12.8 121 3-127 6-146 (527)
230 PLN03126 Elongation factor Tu; 99.7 1.7E-15 3.7E-20 113.4 13.1 143 5-153 78-244 (478)
231 PF09439 SRPRB: Signal recogni 99.7 9.8E-17 2.1E-21 105.3 5.5 116 8-127 3-126 (181)
232 COG0486 ThdF Predicted GTPase 99.7 2.6E-15 5.6E-20 109.6 11.8 114 8-128 217-339 (454)
233 COG0370 FeoB Fe2+ transport sy 99.7 2.9E-15 6.3E-20 113.5 12.3 136 8-153 3-146 (653)
234 TIGR00484 EF-G translation elo 99.6 3.3E-15 7.2E-20 116.8 12.8 118 4-127 6-141 (689)
235 COG1160 Predicted GTPases [Gen 99.6 2.4E-15 5.2E-20 109.5 10.8 112 9-126 4-125 (444)
236 PRK00741 prfC peptide chain re 99.6 5.2E-15 1.1E-19 112.1 13.0 119 3-127 5-145 (526)
237 cd04104 p47_IIGP_like p47 (47- 99.6 2.4E-15 5.2E-20 101.1 9.8 110 9-126 2-120 (197)
238 PRK05124 cysN sulfate adenylyl 99.6 4.1E-15 8.8E-20 111.6 11.9 144 5-153 24-207 (474)
239 PRK00049 elongation factor Tu; 99.6 8.7E-15 1.9E-19 107.8 13.1 143 5-153 9-175 (396)
240 PRK13351 elongation factor G; 99.6 4.9E-15 1.1E-19 115.9 12.2 116 6-127 6-139 (687)
241 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2E-14 4.3E-19 101.4 13.4 127 4-132 34-172 (313)
242 PTZ00141 elongation factor 1- 99.6 9.4E-15 2E-19 108.9 12.4 147 1-153 1-195 (446)
243 TIGR02034 CysN sulfate adenyly 99.6 4.4E-15 9.6E-20 109.7 10.5 140 9-153 1-179 (406)
244 PF10662 PduV-EutP: Ethanolami 99.6 5.2E-15 1.1E-19 93.3 8.8 122 10-153 3-128 (143)
245 PLN03127 Elongation factor Tu; 99.6 1.7E-14 3.7E-19 107.5 13.1 116 6-127 59-191 (447)
246 COG2262 HflX GTPases [General 99.6 1.3E-14 2.9E-19 104.3 11.3 120 6-127 190-318 (411)
247 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 5.1E-14 1.1E-18 94.6 12.7 115 9-127 1-130 (196)
248 TIGR00490 aEF-2 translation el 99.6 6.3E-15 1.4E-19 115.6 9.5 119 4-126 15-151 (720)
249 COG1160 Predicted GTPases [Gen 99.6 6.7E-14 1.5E-18 102.0 13.6 141 7-153 177-333 (444)
250 PRK05506 bifunctional sulfate 99.6 1.5E-14 3.2E-19 112.3 10.9 144 5-153 21-203 (632)
251 COG0218 Predicted GTPase [Gene 99.6 2.6E-14 5.5E-19 94.2 10.4 119 6-131 22-153 (200)
252 cd01853 Toc34_like Toc34-like 99.6 6.7E-14 1.5E-18 97.0 12.6 124 3-128 26-164 (249)
253 cd04165 GTPBP1_like GTPBP1-lik 99.6 6.3E-14 1.4E-18 95.9 12.2 113 10-128 1-153 (224)
254 KOG1489 Predicted GTP-binding 99.6 2.4E-14 5.2E-19 99.8 9.8 142 8-153 196-349 (366)
255 PRK12739 elongation factor G; 99.6 7.4E-14 1.6E-18 109.3 13.7 117 5-127 5-139 (691)
256 PRK00007 elongation factor G; 99.6 1.4E-13 3E-18 107.8 14.6 119 4-128 6-142 (693)
257 COG5256 TEF1 Translation elong 99.6 1.1E-13 2.4E-18 99.7 12.0 143 7-153 6-193 (428)
258 smart00010 small_GTPase Small 99.5 1.2E-13 2.7E-18 85.8 10.5 105 9-142 1-106 (124)
259 KOG1423 Ras-like GTPase ERA [C 99.5 5E-14 1.1E-18 97.9 9.0 122 4-129 68-201 (379)
260 KOG3886 GTP-binding protein [S 99.5 1.4E-14 3.1E-19 97.0 5.6 143 7-152 3-160 (295)
261 COG0532 InfB Translation initi 99.5 3.5E-13 7.7E-18 99.8 13.0 117 7-127 4-121 (509)
262 PLN00116 translation elongatio 99.5 4.6E-14 1E-18 112.3 9.0 121 2-126 13-163 (843)
263 COG3596 Predicted GTPase [Gene 99.5 1.8E-14 3.8E-19 98.9 5.6 119 6-128 37-163 (296)
264 cd00066 G-alpha G protein alph 99.5 1.4E-13 3E-18 98.8 10.3 71 56-126 160-241 (317)
265 KOG0462 Elongation factor-type 99.5 2.8E-13 6.1E-18 100.4 11.7 143 6-153 58-217 (650)
266 cd01899 Ygr210 Ygr210 subfamil 99.5 3.6E-13 7.9E-18 96.3 11.6 81 11-91 1-110 (318)
267 KOG1145 Mitochondrial translat 99.5 6.1E-13 1.3E-17 98.8 11.8 116 7-127 152-267 (683)
268 smart00275 G_alpha G protein a 99.5 5.4E-13 1.2E-17 96.5 10.8 70 57-126 184-264 (342)
269 PTZ00416 elongation factor 2; 99.5 2E-13 4.4E-18 108.6 9.3 119 4-126 15-157 (836)
270 PTZ00327 eukaryotic translatio 99.5 6.3E-13 1.4E-17 99.2 10.2 146 6-153 32-215 (460)
271 PF05049 IIGP: Interferon-indu 99.5 1.4E-13 3.1E-18 99.4 6.5 112 7-125 34-153 (376)
272 PF04548 AIG1: AIG1 family; I 99.5 9.3E-13 2E-17 89.5 9.6 117 9-129 1-132 (212)
273 KOG1490 GTP-binding protein CR 99.4 4.4E-13 9.6E-18 98.6 8.1 146 3-152 163-322 (620)
274 PRK07560 elongation factor EF- 99.4 7.3E-13 1.6E-17 104.3 9.1 119 4-126 16-152 (731)
275 COG0536 Obg Predicted GTPase [ 99.4 2.2E-12 4.8E-17 91.0 10.4 132 10-142 161-304 (369)
276 KOG1707 Predicted Ras related/ 99.4 4.4E-12 9.5E-17 94.7 12.3 134 4-142 421-555 (625)
277 KOG0090 Signal recognition par 99.4 6.1E-13 1.3E-17 88.1 6.9 116 6-126 36-158 (238)
278 PRK12740 elongation factor G; 99.4 1.5E-12 3.2E-17 101.9 10.4 108 14-127 1-126 (668)
279 PF00735 Septin: Septin; Inte 99.4 2.8E-11 6E-16 85.4 15.1 116 7-126 3-155 (281)
280 COG0481 LepA Membrane GTPase L 99.4 6.9E-12 1.5E-16 92.0 11.2 120 4-127 5-142 (603)
281 COG2895 CysN GTPases - Sulfate 99.4 1.1E-11 2.3E-16 88.0 11.7 141 7-153 5-185 (431)
282 TIGR00993 3a0901s04IAP86 chlor 99.4 1.7E-11 3.8E-16 93.7 12.9 120 6-127 116-250 (763)
283 PTZ00258 GTP-binding protein; 99.4 2.4E-11 5.2E-16 88.8 13.1 87 5-91 18-126 (390)
284 KOG1191 Mitochondrial GTPase [ 99.4 2.8E-12 6.1E-17 94.2 7.8 119 8-128 268-404 (531)
285 COG0480 FusA Translation elong 99.4 4.6E-12 1E-16 98.3 9.1 118 5-127 7-142 (697)
286 KOG0082 G-protein alpha subuni 99.3 6.4E-12 1.4E-16 90.0 8.6 81 45-127 185-276 (354)
287 PRK09866 hypothetical protein; 99.3 3.7E-11 8.1E-16 91.7 12.9 95 57-153 230-335 (741)
288 PF00350 Dynamin_N: Dynamin fa 99.3 1.4E-11 3E-16 80.7 9.0 63 58-123 102-168 (168)
289 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.5E-11 7.5E-16 82.5 11.1 135 7-153 38-178 (225)
290 COG1217 TypA Predicted membran 99.3 2E-11 4.4E-16 89.4 10.3 143 7-153 4-167 (603)
291 PF05783 DLIC: Dynein light in 99.3 4.8E-11 1E-15 89.2 12.3 94 8-104 25-125 (472)
292 KOG3905 Dynein light intermedi 99.3 6E-11 1.3E-15 83.6 11.6 141 9-153 53-272 (473)
293 KOG0458 Elongation factor 1 al 99.3 5.8E-11 1.3E-15 88.8 11.9 142 7-153 176-364 (603)
294 PRK09601 GTP-binding protein Y 99.3 2.9E-10 6.2E-15 82.4 14.3 83 9-91 3-107 (364)
295 COG1163 DRG Predicted GTPase [ 99.3 6.2E-11 1.3E-15 83.4 10.4 98 7-106 62-167 (365)
296 PRK14845 translation initiatio 99.3 5.3E-11 1.2E-15 95.8 11.4 101 20-127 473-592 (1049)
297 KOG0468 U5 snRNP-specific prot 99.3 5.3E-11 1.2E-15 90.4 9.5 120 3-126 123-262 (971)
298 KOG1954 Endocytosis/signaling 99.2 1.3E-10 2.8E-15 83.2 9.5 122 3-127 53-225 (532)
299 TIGR00157 ribosome small subun 99.2 9.1E-11 2E-15 81.4 8.4 81 68-153 24-105 (245)
300 PRK09602 translation-associate 99.2 2.7E-10 5.9E-15 83.9 10.3 83 9-91 2-113 (396)
301 COG4917 EutP Ethanolamine util 99.2 4.6E-11 9.9E-16 72.9 4.9 122 10-153 3-128 (148)
302 COG5019 CDC3 Septin family pro 99.2 9.8E-10 2.1E-14 78.6 12.1 117 6-126 21-175 (373)
303 TIGR02836 spore_IV_A stage IV 99.1 9.4E-10 2E-14 80.4 11.4 141 5-151 14-215 (492)
304 KOG0705 GTPase-activating prot 99.1 6.8E-11 1.5E-15 88.1 5.5 139 8-153 30-171 (749)
305 KOG1532 GTPase XAB1, interacts 99.1 2.1E-10 4.7E-15 79.1 7.2 27 4-30 15-41 (366)
306 PF00503 G-alpha: G-protein al 99.1 7.7E-10 1.7E-14 81.7 10.1 70 57-126 236-316 (389)
307 KOG1486 GTP-binding protein DR 99.1 6E-09 1.3E-13 71.3 13.0 97 8-106 62-166 (364)
308 smart00053 DYNc Dynamin, GTPas 99.1 1.4E-09 2.9E-14 75.0 10.1 69 57-128 125-207 (240)
309 PF03029 ATP_bind_1: Conserved 99.1 1.2E-10 2.5E-15 80.5 4.9 70 58-127 92-170 (238)
310 KOG2655 Septin family protein 99.1 2.7E-09 5.8E-14 76.8 11.1 116 7-126 20-171 (366)
311 COG4108 PrfC Peptide chain rel 99.1 1.5E-09 3.3E-14 79.2 9.7 114 5-127 9-147 (528)
312 cd01900 YchF YchF subfamily. 99.1 3.5E-10 7.6E-15 79.4 5.5 81 11-91 1-103 (274)
313 PRK13768 GTPase; Provisional 99.0 6.6E-10 1.4E-14 77.5 6.7 70 58-128 98-177 (253)
314 COG0012 Predicted GTPase, prob 99.0 1.9E-08 4E-13 72.5 12.8 84 8-91 2-108 (372)
315 TIGR00101 ureG urease accessor 99.0 1E-08 2.2E-13 69.1 10.0 86 57-153 92-178 (199)
316 KOG0461 Selenocysteine-specifi 99.0 1.4E-08 3.1E-13 72.4 10.9 117 8-128 7-137 (522)
317 COG5257 GCD11 Translation init 99.0 1.8E-09 3.9E-14 76.1 6.3 145 7-153 9-184 (415)
318 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.8E-09 6.1E-14 68.0 5.8 54 10-67 85-138 (141)
319 KOG1547 Septin CDC10 and relat 98.9 3.3E-08 7.2E-13 67.3 10.1 115 7-125 45-196 (336)
320 cd04178 Nucleostemin_like Nucl 98.9 6.4E-09 1.4E-13 68.5 6.6 55 7-66 116-171 (172)
321 KOG3887 Predicted small GTPase 98.9 1.2E-08 2.7E-13 69.4 7.8 118 8-127 27-149 (347)
322 KOG0099 G protein subunit Galp 98.9 6.9E-09 1.5E-13 71.4 6.5 70 57-126 202-282 (379)
323 KOG1144 Translation initiation 98.9 6.8E-09 1.5E-13 80.1 6.8 112 8-126 475-605 (1064)
324 TIGR00073 hypB hydrogenase acc 98.9 1.1E-08 2.5E-13 69.3 7.3 24 7-30 21-44 (207)
325 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.1E-08 2.4E-13 66.4 6.7 55 7-66 101-156 (157)
326 COG0050 TufB GTPases - transla 98.8 4.8E-08 1E-12 68.3 9.9 132 6-142 10-160 (394)
327 KOG0447 Dynamin-like GTP bindi 98.8 5.6E-08 1.2E-12 73.2 10.3 81 58-141 413-507 (980)
328 COG5192 BMS1 GTP-binding prote 98.8 3.9E-08 8.4E-13 74.3 9.5 137 5-152 66-207 (1077)
329 cd01856 YlqF YlqF. Proteins o 98.8 1.7E-08 3.6E-13 66.5 6.4 57 7-67 114-170 (171)
330 cd01859 MJ1464 MJ1464. This f 98.8 2.2E-08 4.7E-13 64.9 6.6 56 7-66 100-155 (156)
331 KOG0410 Predicted GTP binding 98.8 7.8E-09 1.7E-13 73.0 4.1 117 8-126 178-307 (410)
332 KOG0467 Translation elongation 98.8 4.4E-08 9.6E-13 75.8 8.2 120 2-125 3-136 (887)
333 PRK09563 rbgA GTPase YlqF; Rev 98.8 4.3E-08 9.3E-13 69.7 7.5 57 7-68 120-177 (287)
334 cd01855 YqeH YqeH. YqeH is an 98.7 2.2E-08 4.8E-13 67.0 5.5 53 9-66 128-189 (190)
335 COG3276 SelB Selenocysteine-sp 98.7 1.1E-07 2.4E-12 69.7 9.2 137 10-153 2-144 (447)
336 TIGR03596 GTPase_YlqF ribosome 98.7 4.1E-08 8.8E-13 69.4 6.9 56 7-67 117-173 (276)
337 COG1161 Predicted GTPases [Gen 98.7 3.8E-08 8.3E-13 70.9 6.0 57 8-68 132-188 (322)
338 PRK09435 membrane ATPase/prote 98.6 3.9E-07 8.4E-12 65.8 9.5 61 57-128 149-209 (332)
339 TIGR03348 VI_IcmF type VI secr 98.6 1E-07 2.2E-12 79.0 7.4 111 11-126 114-256 (1169)
340 KOG4273 Uncharacterized conser 98.6 4.9E-07 1.1E-11 62.2 9.3 111 9-126 5-122 (418)
341 KOG0448 Mitofusin 1 GTPase, in 98.6 5.7E-07 1.2E-11 69.2 10.1 118 7-128 108-276 (749)
342 cd01851 GBP Guanylate-binding 98.6 1.8E-06 3.8E-11 59.3 11.5 87 6-92 5-103 (224)
343 cd01849 YlqF_related_GTPase Yl 98.6 1.7E-07 3.6E-12 60.7 6.1 56 6-66 98-154 (155)
344 TIGR00750 lao LAO/AO transport 98.6 3.4E-07 7.4E-12 65.5 8.1 62 56-128 126-187 (300)
345 TIGR00092 GTP-binding protein 98.6 3.2E-07 6.9E-12 66.9 7.4 83 9-91 3-108 (368)
346 PF03193 DUF258: Protein of un 98.5 7.7E-08 1.7E-12 62.3 3.2 59 9-70 36-100 (161)
347 KOG0464 Elongation factor G [T 98.5 3.3E-08 7.1E-13 72.2 1.5 120 3-126 32-167 (753)
348 PRK12288 GTPase RsgA; Reviewed 98.5 2.9E-07 6.3E-12 67.0 6.3 58 11-71 208-271 (347)
349 COG0378 HypB Ni2+-binding GTPa 98.5 1.5E-06 3.2E-11 57.6 9.0 39 115-153 144-183 (202)
350 KOG0085 G protein subunit Galp 98.5 2.3E-08 5E-13 67.8 -0.4 77 52-128 194-281 (359)
351 TIGR03597 GTPase_YqeH ribosome 98.4 5E-07 1.1E-11 66.2 6.0 58 9-69 155-216 (360)
352 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.4E-06 3.1E-11 62.0 7.5 73 75-153 73-146 (287)
353 KOG1491 Predicted GTP-binding 98.4 1.4E-06 3E-11 62.2 7.2 87 6-92 18-126 (391)
354 PRK12289 GTPase RsgA; Reviewed 98.4 6E-07 1.3E-11 65.4 5.6 21 11-31 175-195 (352)
355 PRK13796 GTPase YqeH; Provisio 98.4 5.1E-07 1.1E-11 66.3 5.1 56 9-67 161-220 (365)
356 TIGR00157 ribosome small subun 98.4 6.9E-07 1.5E-11 62.2 5.5 56 10-69 122-183 (245)
357 KOG2486 Predicted GTPase [Gene 98.4 3.7E-07 8.1E-12 63.4 4.0 116 5-127 133-262 (320)
358 PRK10463 hydrogenase nickel in 98.4 1.5E-06 3.2E-11 61.5 7.0 40 114-153 231-271 (290)
359 KOG0460 Mitochondrial translat 98.4 4.5E-06 9.8E-11 59.8 8.8 131 7-142 53-202 (449)
360 KOG1424 Predicted GTP-binding 98.3 7.1E-07 1.5E-11 66.7 4.7 56 8-68 314-370 (562)
361 PRK12289 GTPase RsgA; Reviewed 98.3 2.9E-06 6.4E-11 61.9 7.7 72 73-153 82-157 (352)
362 PRK00098 GTPase RsgA; Reviewed 98.3 3.1E-06 6.7E-11 60.6 7.5 72 77-153 77-149 (298)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 2.4E-06 5.2E-11 54.4 6.2 71 76-153 7-79 (141)
364 KOG0465 Mitochondrial elongati 98.3 1E-06 2.2E-11 67.1 4.8 115 7-127 38-170 (721)
365 COG1162 Predicted GTPases [Gen 98.3 1.5E-06 3.3E-11 61.4 5.2 58 10-70 166-229 (301)
366 cd03112 CobW_like The function 98.3 2.5E-06 5.4E-11 55.5 5.9 22 10-31 2-23 (158)
367 cd01855 YqeH YqeH. YqeH is an 98.3 1.8E-06 3.9E-11 57.7 5.2 78 68-153 22-107 (190)
368 KOG1143 Predicted translation 98.3 3.6E-06 7.8E-11 61.1 6.6 118 7-128 166-318 (591)
369 KOG3859 Septins (P-loop GTPase 98.3 5.8E-06 1.3E-10 57.8 7.2 114 7-125 41-188 (406)
370 PRK12288 GTPase RsgA; Reviewed 98.2 8E-06 1.7E-10 59.5 7.8 72 78-153 118-190 (347)
371 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 8.8E-11 59.6 6.2 60 9-71 162-227 (287)
372 PRK00098 GTPase RsgA; Reviewed 98.2 3.6E-06 7.9E-11 60.2 5.9 23 10-32 166-188 (298)
373 PF03266 NTPase_1: NTPase; In 98.2 3.7E-05 8.1E-10 50.5 10.1 108 10-123 1-135 (168)
374 cd01859 MJ1464 MJ1464. This f 98.2 1.7E-06 3.7E-11 55.9 3.6 76 71-153 3-78 (156)
375 PF09547 Spore_IV_A: Stage IV 98.1 9.3E-05 2E-09 54.8 11.8 26 6-31 15-40 (492)
376 COG1618 Predicted nucleotide k 98.1 7E-05 1.5E-09 48.4 9.7 113 7-125 4-142 (179)
377 TIGR03597 GTPase_YqeH ribosome 98.1 5.2E-06 1.1E-10 60.9 5.2 79 67-153 50-135 (360)
378 KOG0469 Elongation factor 2 [T 98.1 1.3E-05 2.8E-10 60.3 6.8 127 5-135 16-173 (842)
379 PRK11537 putative GTP-binding 98.1 6.1E-05 1.3E-09 54.4 10.0 85 57-151 91-185 (318)
380 COG5258 GTPBP1 GTPase [General 98.1 3.6E-05 7.9E-10 56.2 8.1 120 5-128 114-270 (527)
381 COG3523 IcmF Type VI protein s 98.0 1.4E-05 3.1E-10 65.8 6.5 115 11-127 128-270 (1188)
382 PRK13695 putative NTPase; Prov 98.0 0.00019 4.1E-09 47.3 9.8 22 9-30 1-22 (174)
383 KOG0466 Translation initiation 98.0 3.2E-06 6.9E-11 59.8 1.4 147 5-153 35-223 (466)
384 TIGR01425 SRP54_euk signal rec 98.0 5.8E-05 1.2E-09 56.4 7.9 65 56-126 182-252 (429)
385 PF06858 NOG1: Nucleolar GTP-b 97.9 7.9E-05 1.7E-09 39.5 5.7 43 81-124 14-58 (58)
386 KOG1487 GTP-binding protein DR 97.9 0.00011 2.4E-09 51.1 7.9 89 9-99 60-155 (358)
387 cd02038 FleN-like FleN is a me 97.9 8E-05 1.7E-09 47.3 6.9 106 13-126 5-110 (139)
388 cd01858 NGP_1 NGP-1. Autoanti 97.9 4.2E-05 9.1E-10 49.5 5.7 49 77-127 5-53 (157)
389 COG0523 Putative GTPases (G3E 97.9 0.00022 4.9E-09 51.5 9.8 135 11-152 4-183 (323)
390 KOG2484 GTPase [General functi 97.9 1.3E-05 2.8E-10 58.5 3.1 58 6-67 250-307 (435)
391 PF13555 AAA_29: P-loop contai 97.8 1.9E-05 4.1E-10 42.8 2.9 21 10-30 25-45 (62)
392 PF13207 AAA_17: AAA domain; P 97.8 1.9E-05 4.1E-10 48.8 3.0 21 10-30 1-21 (121)
393 cd03111 CpaE_like This protein 97.8 0.00018 3.9E-09 43.6 7.2 103 11-122 2-106 (106)
394 cd03115 SRP The signal recogni 97.8 0.00017 3.7E-09 47.4 7.7 65 57-127 83-153 (173)
395 cd00009 AAA The AAA+ (ATPases 97.8 0.00017 3.6E-09 45.4 7.4 24 8-31 19-42 (151)
396 PRK10416 signal recognition pa 97.8 0.00011 2.3E-09 53.2 7.1 23 8-30 114-136 (318)
397 PRK08118 topology modulation p 97.8 1.9E-05 4.2E-10 51.8 3.0 22 9-30 2-23 (167)
398 COG0563 Adk Adenylate kinase a 97.8 1.8E-05 3.9E-10 52.4 2.9 23 9-31 1-23 (178)
399 PRK07261 topology modulation p 97.8 2.1E-05 4.6E-10 51.8 3.0 21 10-30 2-22 (171)
400 PF05621 TniB: Bacterial TniB 97.7 0.00015 3.2E-09 51.6 6.8 109 3-125 56-192 (302)
401 TIGR00064 ftsY signal recognit 97.7 0.00011 2.4E-09 51.9 6.2 65 57-127 155-231 (272)
402 PF13671 AAA_33: AAA domain; P 97.7 2.9E-05 6.2E-10 49.3 2.9 20 11-30 2-21 (143)
403 COG1136 SalX ABC-type antimicr 97.7 3.8E-05 8.2E-10 52.5 3.5 23 10-32 33-55 (226)
404 cd02042 ParA ParA and ParB of 97.7 0.00029 6.2E-09 42.3 7.1 82 11-104 2-84 (104)
405 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00055 1.2E-08 40.0 8.2 68 11-92 2-70 (99)
406 COG1126 GlnQ ABC-type polar am 97.7 4.1E-05 8.8E-10 51.8 3.5 24 10-33 30-53 (240)
407 PRK14722 flhF flagellar biosyn 97.7 0.0005 1.1E-08 50.7 9.2 22 9-30 138-159 (374)
408 PF00005 ABC_tran: ABC transpo 97.7 4.8E-05 1E-09 48.0 3.1 23 10-32 13-35 (137)
409 COG1116 TauB ABC-type nitrate/ 97.6 6.1E-05 1.3E-09 51.9 3.5 22 11-32 32-53 (248)
410 PRK12727 flagellar biosynthesi 97.6 0.0017 3.8E-08 49.9 11.5 22 9-30 351-372 (559)
411 KOG2485 Conserved ATP/GTP bind 97.6 8.2E-05 1.8E-09 52.8 4.1 60 7-67 142-206 (335)
412 cd01849 YlqF_related_GTPase Yl 97.6 0.00024 5.2E-09 45.9 5.9 43 82-127 1-43 (155)
413 cd02019 NK Nucleoside/nucleoti 97.6 6.6E-05 1.4E-09 41.8 2.9 20 11-30 2-21 (69)
414 cd03222 ABC_RNaseL_inhibitor T 97.6 0.0007 1.5E-08 44.9 8.2 23 10-32 27-49 (177)
415 COG3840 ThiQ ABC-type thiamine 97.6 7.8E-05 1.7E-09 49.3 3.4 24 9-32 26-49 (231)
416 cd01856 YlqF YlqF. Proteins o 97.6 9.6E-05 2.1E-09 48.6 3.9 50 72-127 11-60 (171)
417 KOG0463 GTP-binding protein GP 97.6 0.00017 3.8E-09 52.7 5.5 115 8-126 133-286 (641)
418 PF13521 AAA_28: AAA domain; P 97.6 4.6E-05 9.9E-10 49.7 2.4 22 10-31 1-22 (163)
419 COG3845 ABC-type uncharacteriz 97.6 0.00051 1.1E-08 51.7 8.0 52 72-125 150-202 (501)
420 PF03205 MobB: Molybdopterin g 97.6 7.4E-05 1.6E-09 47.6 3.0 21 10-30 2-22 (140)
421 PRK06217 hypothetical protein; 97.5 8.3E-05 1.8E-09 49.5 3.0 22 9-30 2-23 (183)
422 TIGR00235 udk uridine kinase. 97.5 0.00012 2.6E-09 49.7 3.8 24 7-30 5-28 (207)
423 PRK10751 molybdopterin-guanine 97.5 0.00012 2.6E-09 48.2 3.6 28 1-30 1-28 (173)
424 cd00071 GMPK Guanosine monopho 97.5 0.0001 2.2E-09 46.8 2.9 20 11-30 2-21 (137)
425 smart00382 AAA ATPases associa 97.5 0.00011 2.4E-09 45.7 3.1 24 9-32 3-26 (148)
426 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.3E-09 49.0 3.1 22 10-31 4-25 (186)
427 TIGR02322 phosphon_PhnN phosph 97.5 9.7E-05 2.1E-09 48.8 2.9 22 10-31 3-24 (179)
428 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00012 2.5E-09 44.3 2.7 21 9-29 16-36 (107)
429 PF00004 AAA: ATPase family as 97.5 0.00012 2.6E-09 45.6 2.9 20 11-30 1-20 (132)
430 cd01130 VirB11-like_ATPase Typ 97.4 0.00013 2.8E-09 48.7 3.1 23 9-31 26-48 (186)
431 cd03238 ABC_UvrA The excision 97.4 0.00014 2.9E-09 48.2 3.1 22 9-30 22-43 (176)
432 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.2E-09 52.6 3.5 22 11-32 32-53 (338)
433 PF13238 AAA_18: AAA domain; P 97.4 0.00013 2.8E-09 45.3 2.9 21 11-31 1-21 (129)
434 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00049 1.1E-08 43.4 5.4 22 10-31 24-45 (133)
435 KOG3929 Uncharacterized conser 97.4 0.0001 2.2E-09 51.2 2.3 85 7-94 44-133 (363)
436 PRK05480 uridine/cytidine kina 97.4 0.00019 4.2E-09 48.7 3.7 24 7-30 5-28 (209)
437 PRK14738 gmk guanylate kinase; 97.4 0.00018 4E-09 48.8 3.5 26 5-30 10-35 (206)
438 KOG0459 Polypeptide release fa 97.4 0.00032 7E-09 51.6 4.9 118 6-126 77-230 (501)
439 TIGR03263 guanyl_kin guanylate 97.4 0.00014 3.1E-09 48.0 2.9 22 10-31 3-24 (180)
440 cd02023 UMPK Uridine monophosp 97.4 0.00014 3E-09 48.9 2.8 20 11-30 2-21 (198)
441 COG1117 PstB ABC-type phosphat 97.4 0.00014 3E-09 49.3 2.7 21 10-30 35-55 (253)
442 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00016 3.5E-09 49.3 3.1 22 10-31 32-53 (218)
443 PRK01889 GTPase RsgA; Reviewed 97.4 0.00018 3.9E-09 52.8 3.4 24 9-32 196-219 (356)
444 PRK14530 adenylate kinase; Pro 97.4 0.00016 3.6E-09 49.3 3.0 22 9-30 4-25 (215)
445 COG3638 ABC-type phosphate/pho 97.4 0.00016 3.4E-09 49.6 2.8 21 10-30 32-52 (258)
446 cd01131 PilT Pilus retraction 97.4 0.00016 3.4E-09 48.8 2.9 20 11-30 4-23 (198)
447 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00018 3.8E-09 48.7 3.1 22 10-31 28-49 (205)
448 PRK03839 putative kinase; Prov 97.4 0.00017 3.7E-09 47.8 2.9 21 10-30 2-22 (180)
449 PF04665 Pox_A32: Poxvirus A32 97.4 0.00018 3.8E-09 49.8 3.1 24 7-30 12-35 (241)
450 cd03225 ABC_cobalt_CbiO_domain 97.4 0.00018 4E-09 48.8 3.1 22 10-31 29-50 (211)
451 PRK13796 GTPase YqeH; Provisio 97.4 0.0005 1.1E-08 50.7 5.6 76 69-153 58-141 (365)
452 TIGR00960 3a0501s02 Type II (G 97.4 0.00018 4E-09 49.0 3.1 22 10-31 31-52 (216)
453 cd03292 ABC_FtsE_transporter F 97.4 0.00019 4.2E-09 48.8 3.1 22 10-31 29-50 (214)
454 TIGR03596 GTPase_YlqF ribosome 97.4 0.00034 7.4E-09 49.6 4.5 58 64-127 4-62 (276)
455 cd03261 ABC_Org_Solvent_Resist 97.3 0.00019 4.2E-09 49.5 3.1 22 10-31 28-49 (235)
456 cd03264 ABC_drug_resistance_li 97.3 0.00017 3.7E-09 48.9 2.8 22 10-31 27-48 (211)
457 TIGR01166 cbiO cobalt transpor 97.3 0.0002 4.4E-09 47.8 3.1 22 10-31 20-41 (190)
458 cd03265 ABC_DrrA DrrA is the A 97.3 0.0002 4.3E-09 49.0 3.2 22 10-31 28-49 (220)
459 cd03269 ABC_putative_ATPase Th 97.3 0.0002 4.4E-09 48.6 3.1 22 10-31 28-49 (210)
460 COG1120 FepC ABC-type cobalami 97.3 0.00018 3.8E-09 50.3 2.9 20 11-30 31-50 (258)
461 cd03259 ABC_Carb_Solutes_like 97.3 0.0002 4.4E-09 48.7 3.1 22 10-31 28-49 (213)
462 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00018 3.9E-09 50.0 2.9 21 10-30 32-52 (254)
463 PRK01889 GTPase RsgA; Reviewed 97.3 0.001 2.2E-08 49.0 6.9 71 77-153 109-179 (356)
464 PRK07429 phosphoribulokinase; 97.3 0.00028 6E-09 51.2 3.9 30 1-30 1-30 (327)
465 PRK13851 type IV secretion sys 97.3 0.00019 4.1E-09 52.4 3.1 24 8-31 162-185 (344)
466 TIGR02673 FtsE cell division A 97.3 0.00021 4.5E-09 48.6 3.1 22 10-31 30-51 (214)
467 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0002 4.3E-09 45.8 2.8 23 10-32 28-50 (144)
468 KOG3347 Predicted nucleotide k 97.3 0.00017 3.7E-09 46.0 2.4 25 6-30 5-29 (176)
469 TIGR03608 L_ocin_972_ABC putat 97.3 0.00022 4.7E-09 48.2 3.1 22 10-31 26-47 (206)
470 PF07728 AAA_5: AAA domain (dy 97.3 0.00023 4.9E-09 45.1 3.0 21 10-30 1-21 (139)
471 COG1419 FlhF Flagellar GTP-bin 97.3 0.00076 1.7E-08 49.8 6.1 23 8-30 203-225 (407)
472 cd02025 PanK Pantothenate kina 97.3 0.00018 3.9E-09 49.3 2.7 20 11-30 2-21 (220)
473 PRK08233 hypothetical protein; 97.3 0.0002 4.4E-09 47.3 2.9 22 9-30 4-25 (182)
474 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00022 4.7E-09 48.8 3.1 23 10-32 32-54 (220)
475 TIGR02315 ABC_phnC phosphonate 97.3 0.00021 4.6E-09 49.5 3.1 22 10-31 30-51 (243)
476 cd03262 ABC_HisP_GlnQ_permease 97.3 0.00023 4.9E-09 48.4 3.1 23 10-32 28-50 (213)
477 cd03224 ABC_TM1139_LivF_branch 97.3 0.00022 4.8E-09 48.8 3.1 22 10-31 28-49 (222)
478 TIGR02211 LolD_lipo_ex lipopro 97.3 0.00023 4.9E-09 48.7 3.1 23 10-32 33-55 (221)
479 TIGR01360 aden_kin_iso1 adenyl 97.3 0.0002 4.3E-09 47.5 2.8 21 9-29 4-24 (188)
480 cd03229 ABC_Class3 This class 97.3 0.00025 5.5E-09 46.9 3.2 22 10-31 28-49 (178)
481 cd03263 ABC_subfamily_A The AB 97.3 0.00024 5.2E-09 48.5 3.1 23 10-32 30-52 (220)
482 PRK14532 adenylate kinase; Pro 97.3 0.00023 5E-09 47.4 2.9 21 10-30 2-22 (188)
483 PF02367 UPF0079: Uncharacteri 97.3 0.00044 9.6E-09 42.9 3.9 22 9-30 16-37 (123)
484 cd03260 ABC_PstB_phosphate_tra 97.3 0.00025 5.4E-09 48.7 3.1 23 10-32 28-50 (227)
485 cd03257 ABC_NikE_OppD_transpor 97.3 0.00024 5.3E-09 48.7 3.1 22 10-31 33-54 (228)
486 cd03216 ABC_Carb_Monos_I This 97.3 0.00027 5.8E-09 46.1 3.1 23 10-32 28-50 (163)
487 TIGR01189 ccmA heme ABC export 97.3 0.00026 5.7E-09 47.6 3.2 22 10-31 28-49 (198)
488 cd03266 ABC_NatA_sodium_export 97.3 0.00025 5.5E-09 48.3 3.1 22 10-31 33-54 (218)
489 cd03219 ABC_Mj1267_LivG_branch 97.3 0.00024 5.2E-09 49.1 3.0 22 10-31 28-49 (236)
490 PRK10646 ADP-binding protein; 97.3 0.0015 3.3E-08 42.1 6.4 21 10-30 30-50 (153)
491 PRK13541 cytochrome c biogenes 97.3 0.00026 5.7E-09 47.5 3.1 23 10-32 28-50 (195)
492 cd03218 ABC_YhbG The ABC trans 97.3 0.00026 5.5E-09 48.8 3.1 23 10-32 28-50 (232)
493 cd03258 ABC_MetN_methionine_tr 97.3 0.00026 5.7E-09 48.8 3.1 23 10-32 33-55 (233)
494 PRK11248 tauB taurine transpor 97.3 0.00026 5.6E-09 49.6 3.1 23 10-32 29-51 (255)
495 PRK00300 gmk guanylate kinase; 97.3 0.00024 5.1E-09 48.0 2.9 23 9-31 6-28 (205)
496 COG0194 Gmk Guanylate kinase [ 97.3 0.00023 4.9E-09 47.1 2.6 24 9-32 5-28 (191)
497 cd03301 ABC_MalK_N The N-termi 97.3 0.00027 5.9E-09 48.0 3.2 23 10-32 28-50 (213)
498 PRK13540 cytochrome c biogenes 97.3 0.00038 8.2E-09 46.9 3.8 23 10-32 29-51 (200)
499 PRK15177 Vi polysaccharide exp 97.3 0.00032 7E-09 47.8 3.5 23 10-32 15-37 (213)
500 cd03235 ABC_Metallic_Cations A 97.3 0.00026 5.7E-09 48.1 3.0 22 10-31 27-48 (213)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-43 Score=225.34 Aligned_cols=152 Identities=78% Similarity=1.227 Sum_probs=148.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+++.++.+||+|+|++|+|||+|+.|+.+..|.+++..|.+.++..+.+.++++.+++++|||.|+++|+.+..+|+++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCce-eeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIF-FFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 153 (153)
+|++|||||+++++||.++..|+..++.+...++|.++||||+|+.+.+.++.+++++++.. ++++ |+|+||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-~~~~~f~ETSA 154 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-LGIPIFLETSA 154 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh-cCCcceeeccc
Confidence 99999999999999999999999999999998899999999999999999999999999999 9999 999998
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-39 Score=211.11 Aligned_cols=149 Identities=65% Similarity=1.105 Sum_probs=146.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.+++.+||+++|++++|||+++.++....+...+..+.+.++..+.+..++..+.+++||+.|++.++.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|||++++.||+++..|+..+..+.+.++|++|||||+|+.+.|+|+.+.++++|.+ .|+.|+|+||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e-~G~~F~EtSA 156 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALARE-YGIKFFETSA 156 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHH-hCCeEEEccc
Confidence 99999999999999999999999999998999999999999999999999999999999 8999999998
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-38 Score=204.30 Aligned_cols=149 Identities=51% Similarity=0.891 Sum_probs=144.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.+++.+|++++|+.|+|||+|+.+++...|.+....|.+.++..+.+.+++.++++++||+.|++.|.++...|++.+.+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||+++++||..+..|+..++++..+++.++|++||+||...|.|+.||+++|+++ .++.|+|+||
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-hgLifmETSa 150 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFARE-HGLIFMETSA 150 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHH-cCceeehhhh
Confidence 99999999999999999999999999888999999999999999999999999999999 9999999997
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-37 Score=200.31 Aligned_cols=147 Identities=49% Similarity=0.840 Sum_probs=141.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+|++++|..++|||||+.|+..++|++...++.+.-+..+.+..++..+++.+|||.|+++|+++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45799999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||+++.+||..++.|+..++...+++.-+.|||||+||.+.|+|..++++.++++ .++.|||+||
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-~gll~~ETSA 149 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAES-QGLLFFETSA 149 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHh-cCCEEEEEec
Confidence 999999999999999999999999998899999999999999999999999999999 9999999997
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.3e-36 Score=202.75 Aligned_cols=148 Identities=47% Similarity=0.809 Sum_probs=135.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+.++.+||+++|+.|+|||||++++..+.+..++.++.+.++....+..++..+.+.+||++|++.+..++..+++++|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 45678999999999999999999999988887777777777777778888999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+|+++..|++.+....+ +.|++|||||.|+.+.++++.++++++++. .++.|+||||
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~-~~~~~~e~SA 149 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAER-NGMTFFEVSP 149 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHH-cCCEEEEecC
Confidence 9999999999999999999999977654 799999999999988888999999999998 7899999998
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.6e-36 Score=203.02 Aligned_cols=145 Identities=49% Similarity=0.885 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
++|+++|+.|+|||||++++..+.+..++.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47899999999999999999999998888888888888888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+..|+..++.....+.|+++|+||+|+.+.+++..+++++++++..++.|++|||
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999999999887766679999999999998888999999999998745899999998
No 7
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-37 Score=189.46 Aligned_cols=151 Identities=52% Similarity=0.975 Sum_probs=145.2
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
.++.++..|++|+|+..+|||+|+.+..+..+.....++.+.++..+++....+.+++++|||.|++.++.+...+++++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 36788999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++|++||+++.+||..+..|...++..+..+.|+|+|+||||+.++|.++.|.++.++++ .|+.|||+||
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~-LGfefFEtSa 165 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQ-LGFEFFETSA 165 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHH-hChHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999997
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=189.17 Aligned_cols=150 Identities=51% Similarity=0.865 Sum_probs=142.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
+..+..+||+++|.+|+|||+|+.++..+.+.+....+.+.++.++.+.+++..+++-+|||.|++.|+...+.|++.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 44677899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++.+++|..+..|+..+...+. ++...++|+||+|...+|.|+.+|+.++++. .++.|+||||
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-h~~LFiE~SA 156 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-HRCLFIECSA 156 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh-hCcEEEEcch
Confidence 99999999999999999999999988775 6788899999999888899999999999999 9999999998
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-36 Score=196.85 Aligned_cols=151 Identities=53% Similarity=0.883 Sum_probs=146.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
..+.++.+||+++|++++|||-|+.|+..++|..+..+|.+.++....+.++++.++.++|||.|+++|+.+...|++.+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++++|||++.+.+|+++..|+..++.+..++++++|||||+||.+.|.|..++++.+++. .++.|+|+||
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-~~l~f~EtSA 158 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-EGLFFLETSA 158 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-cCceEEEecc
Confidence 9999999999999999999999999999988999999999999999999999999999999 9999999998
No 10
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.6e-37 Score=189.76 Aligned_cols=151 Identities=65% Similarity=1.035 Sum_probs=144.1
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|.-..+...+.+|+|++|+|||+|+.++....|..++..+.+.++..+++.++|..+++++||+.|++.|+.+...|+++
T Consensus 1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence 44556667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.|++++|||+++.+||.+...|++.+++.+. ..|-++||||.|..+++.|..+++++|+.+ .++.+||+||
T Consensus 81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~-mgie~FETSa 151 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQ-MGIELFETSA 151 (198)
T ss_pred CceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHh-cCchheehhh
Confidence 9999999999999999999999999999888 599999999999999999999999999999 9999999997
No 11
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-36 Score=193.22 Aligned_cols=146 Identities=40% Similarity=0.691 Sum_probs=139.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..+|++++|..++||||||++++...+...+.++++.++...++.+.+..+.+++|||.|+++|+.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||+++..||++..+|++.++..... ++.++|||||.||.+.+++..+|+...+++ .+..|.++||
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-l~a~f~etsa 167 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-LNAEFIETSA 167 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHH-hCcEEEEecc
Confidence 99999999999999999999877664 488999999999999999999999999999 8889999997
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.5e-35 Score=195.60 Aligned_cols=146 Identities=30% Similarity=0.576 Sum_probs=130.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....+||+++|++++|||||++++..+.+..++.|+.+..+. ..+..++..+.+.+||++|++.+..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 346789999999999999999999999998888888875554 5677889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcC-ceeee
Q 031777 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTG-IFFFY 150 (153)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 150 (153)
|+|||++++.+|+.+ ..|++.++...+ +.|++|||||+|+.+ .+.++.+++++++++ .+ ++|+|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~-~~~~~~~E 158 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ-IGAATYIE 158 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH-cCCCEEEE
Confidence 999999999999997 789999988764 699999999999964 346999999999999 66 59999
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
|||
T Consensus 159 ~SA 161 (182)
T cd04172 159 CSA 161 (182)
T ss_pred CCc
Confidence 998
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=191.06 Aligned_cols=153 Identities=37% Similarity=0.682 Sum_probs=141.7
Q ss_pred CCC-CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccccc
Q 031777 1 MNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (153)
Q Consensus 1 m~~-~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 79 (153)
|.. .+...+||+++|++|+|||+|++++.+.+|...+..+++.++-.+++.+++..+.+++|||.|+++|.++.-.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 554 4567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCC--CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTA--NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|.++++||++++.+|+.+..|.+.+..+.. ...|++|+|||.|+.. .++++.+.|+.|+.+.++++|||+||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999998866543 3489999999999965 38999999999999989999999998
No 14
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.1e-34 Score=191.48 Aligned_cols=142 Identities=33% Similarity=0.636 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+|++++|++++|||+|+.++..+.+..++.++.+..+ ...+..++..+++.+||++|++.+..++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887655 355678888999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCc----------ccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 89 DVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK----------VVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
|+++++||+.+ ..|+..++...+ +.|++|||||+|+.+++ .++.++++++++. .++ .|+||||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~-~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ-IGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-cCCCEEEECCC
Confidence 99999999998 689999987754 69999999999996643 4889999999999 666 6999998
No 15
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=8.2e-35 Score=190.76 Aligned_cols=145 Identities=47% Similarity=0.872 Sum_probs=133.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+++.+||+||++.+...+..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888777877777777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+.+..|+..++....++.|+++|+||+|+.+.+.++.++++++++. .+++|++|||
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 146 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-NGLLFLECSA 146 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cCCEEEEEEC
Confidence 9999999999999999998877667799999999999988888999999999998 7899999997
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-34 Score=191.88 Aligned_cols=143 Identities=31% Similarity=0.599 Sum_probs=127.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|++|+|||||++++..+.+...+.|+.+..+. ..+.+++..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998888888765553 5677888999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 88 YDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
||+++++||+.+ ..|++.++...+ +.|++|||||+|+.+ .+.++.+++++++++ .++ .|+||||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~-~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ-LGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH-hCCCEEEECcc
Confidence 999999999996 789999988765 699999999999964 246899999999999 665 8999998
No 17
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=185.11 Aligned_cols=152 Identities=47% Similarity=0.852 Sum_probs=147.1
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+..+|+.+|++++|+.|+|||+|++++..+++......+.+.++.++.+.+.++.+++++||+.|++.|++..+.|+++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 67889999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.+.++|||++++++|+.+..|+...+...++++-+++++||.||.++++|+..++.+++++ +.+.+.|+||
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqE-nel~flETSa 153 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NELMFLETSA 153 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcc-cceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999997
No 18
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.3e-34 Score=186.58 Aligned_cols=144 Identities=50% Similarity=0.919 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
++|+++|++|+|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888887777777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..+++..+++. .+++|++|||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 144 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE-YGMDFFETSA 144 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999877666799999999999988888999999999988 7799999997
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.5e-34 Score=187.98 Aligned_cols=147 Identities=65% Similarity=1.094 Sum_probs=134.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
++.+||+++|++|+|||||++++.+.++...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999999988888888887777777778888899999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+++..++++.++.. .+++++++||
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 147 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-YGIKFLETSA 147 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999887667799999999999988778888889999988 7889999997
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7e-34 Score=194.29 Aligned_cols=145 Identities=27% Similarity=0.544 Sum_probs=129.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+++|+.++|||+|++++..+.+..++.|+.+..+. ..+..++..+.+.+||++|++.+..+++.+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 35689999999999999999999999999888888876654 45778899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcCc-eeeec
Q 031777 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTGI-FFFYP 151 (153)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (153)
+|||++++.+|+.+ ..|+..++...+ +.|++||+||+|+.+ .++++.+++++++++ .++ .|+||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~-~~~~~~~Et 167 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ-LGAEVYLEC 167 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH-cCCCEEEEc
Confidence 99999999999984 789999987664 689999999999964 367999999999999 777 79999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 168 SA 169 (232)
T cd04174 168 SA 169 (232)
T ss_pred cC
Confidence 98
No 21
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.1e-33 Score=185.18 Aligned_cols=144 Identities=53% Similarity=0.952 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+.++...+.++.+.++....+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988887888877777677777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQ-LGFEFFEASA 145 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHH-cCCEEEEEEC
Confidence 999999999999999999877766799999999999988778888888999888 7889999997
No 22
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-35 Score=180.36 Aligned_cols=149 Identities=49% Similarity=0.895 Sum_probs=143.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+++..+||+++|+.|+|||+|++++..+-+++....+.+.++-.+++.+++..+++++||+.|++.|+++...|++.+|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++||++...+|+-+..|+..+.+.....+-.++||||.|+.++++++.+.++++++. ..+.|.|+||
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsa 151 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSA 151 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcc
Confidence 99999999999999999999999999988888999999999999999999999999999 8999999997
No 23
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.4e-34 Score=185.66 Aligned_cols=143 Identities=45% Similarity=0.832 Sum_probs=135.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|+.++|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888888788888889999999999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++.+|+.+..|++.+....+.+.|++|++||.|+.+.++++.+++++++++ .+.+|+||||
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 143 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKE-LGVPYFEVSA 143 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHH-TTSEEEEEBT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHH-hCCEEEEEEC
Confidence 99999999999999999998886799999999999988889999999999999 6699999997
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.1e-33 Score=186.37 Aligned_cols=144 Identities=31% Similarity=0.510 Sum_probs=128.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877777776444 34567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.++++.++++++++. .+++|++|||
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sa 146 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-FNCPFFETSA 146 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-hCCEEEEEec
Confidence 99999999999998888887653 35799999999999988888999999999988 7899999998
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.1e-33 Score=187.97 Aligned_cols=144 Identities=28% Similarity=0.557 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|+.++|||||++++..+.+..++.|+.+..+. ..+.+++..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 489999999999999999999999998888888875443 4456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+.+. .|+..++...+ +.|++||+||.|+.+. +.++.++++++++..+.+.|+||||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999999997 58888876554 6999999999999654 2477889999999834479999998
No 26
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-33 Score=183.95 Aligned_cols=148 Identities=50% Similarity=0.877 Sum_probs=132.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
++.+||+++|++|+|||||++++..+.+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999988888777777777777777888888889999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+++..++++++++.+....++++||
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence 99999999999999999999987766679999999999998888888889999998845567999997
No 27
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.5e-33 Score=185.23 Aligned_cols=143 Identities=29% Similarity=0.517 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++..+.+..++.|+.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888875554 35667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|+..++...+ +.|+++|+||+|+.+. +.++.++++++++..+.+.|+||||
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 999999999997 59988877654 6899999999998643 5788899999998845589999998
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.7e-33 Score=185.66 Aligned_cols=147 Identities=42% Similarity=0.818 Sum_probs=130.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC----------CeEEEEEEEeCCCccccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------GKTIKLQIWDTAGQERFRTITS 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~d~~g~~~~~~~~~ 75 (153)
++.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999988888888776665555543 4568999999999999999999
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+++++|++|+|||++++++|..+..|+..+.... .++.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 159 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-YGIPYFETSA 159 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999999999999999997764 34689999999999988788899999999998 7889999997
No 29
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.9e-33 Score=182.50 Aligned_cols=146 Identities=53% Similarity=0.869 Sum_probs=133.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+.+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||+..+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 46899999999999999999999988887777888877777788888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+++.+..|+..++.....+.|+++|+||+|+.+.+++..++.+.++.. .++.++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 147 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-NGLSFIETSA 147 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHH-cCCEEEEEEC
Confidence 99999999999999999999888776799999999999988778888899999988 7899999997
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.1e-33 Score=182.60 Aligned_cols=145 Identities=83% Similarity=1.258 Sum_probs=131.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888877778877777777777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++++|..+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++. .+++++++||
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 146 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-LGIPFLETSA 146 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHH-cCCeEEEEEC
Confidence 9999999999999999999877656789999999999988778888999999988 7899999997
No 31
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.8e-33 Score=189.42 Aligned_cols=149 Identities=50% Similarity=0.854 Sum_probs=136.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+.++.+||+++|++|+|||||+++|.+..+..++.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35577999999999999999999999988877778888888887888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+|+.+..|+..++.....+.|+++|+||+|+.+.+.+..++++.++.. .+++|+++||
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~SA 156 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-EGLSFLETSA 156 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999999999888777899999999999988888899999999988 7899999997
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.1e-33 Score=187.48 Aligned_cols=144 Identities=40% Similarity=0.732 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+||+++|++|+|||||++++.++.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888877777777777 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcC-ceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTG-IFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 153 (153)
||++++.+|+.+..|+..+.... ..+.|++||+||+|+.+.+.+..++++++++. .+ ..|++|||
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa 150 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE-NGFIGWFETSA 150 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cCCceEEEEeC
Confidence 99999999999999998886543 25689999999999987778889999999998 55 79999997
No 33
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.4e-33 Score=181.84 Aligned_cols=147 Identities=50% Similarity=0.924 Sum_probs=133.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
++.+||+++|.+|+|||||++++.+..+.....++.+.++....+..++....+.+||+||++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999998887777777777777777788888889999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..++....++.|+++|+||.|+.+.+.++.++++.++.. .++.++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 148 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-HGLIFMETSA 148 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999887667799999999999987778888999999988 7899999997
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.1e-33 Score=189.16 Aligned_cols=143 Identities=27% Similarity=0.540 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+|+|+.|+|||+|++++..+.++.++.|+....+. ..+.+++..+.+.+||++|++.+..+++.+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999999888888875554 56778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|...++... ++.|++||+||+|+.+. ..++.++++.++++.+.+.|+||||
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999984 6877776654 46999999999999652 1478899999999944469999998
No 35
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.8e-33 Score=180.40 Aligned_cols=144 Identities=47% Similarity=0.853 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998888777777777777777788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+++++++..+..|+..++....++.|+++++||.|+.+.+.++.++++.+++. .++.++++||
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE-NGLLFLETSA 144 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-cCCEEEEEEC
Confidence 999999999999999999877777899999999999988788889999999998 7799999997
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=8e-33 Score=181.09 Aligned_cols=144 Identities=30% Similarity=0.725 Sum_probs=130.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888887778888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~-----~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++.+..|+..+..... .+.|+++|+||+|+.+++.+..++++++++. .+++++++||
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 149 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-KGFKYFETSA 149 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-cCCeEEEEEC
Confidence 99999999999999999977654 4689999999999976677889999999988 7799999997
No 37
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1e-32 Score=181.47 Aligned_cols=145 Identities=45% Similarity=0.829 Sum_probs=130.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGIII 86 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~ 86 (153)
.++|+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988887778888777777778888988999999999998886 578889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++++++. .+++|+||||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 148 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA-HSMPLFETSA 148 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH-cCCcEEEEec
Confidence 999999999999999999887764 35699999999999988888999999999988 7899999997
No 38
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-32 Score=183.41 Aligned_cols=144 Identities=61% Similarity=0.948 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777788877777777788888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|..+..|+..+......+.|+++++||.|+.+.+.++.++++.+++. .+++++++||
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa 144 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-LNIPFFETSA 144 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHH-cCCeEEEEeC
Confidence 999999999999999999887766789999999999988788889999999888 7889999997
No 39
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.6e-32 Score=184.79 Aligned_cols=147 Identities=65% Similarity=1.014 Sum_probs=132.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45679999999999999999999999888877788887777777777888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++++|+.+..|+..+..... ..|+++|+||+|+.+.+.+..++++.++.. .+++++++||
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 149 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQ-MGISLFETSA 149 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEEC
Confidence 999999999999999999999877654 589999999999988777888899999988 7799999997
No 40
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=1.8e-32 Score=180.91 Aligned_cols=143 Identities=29% Similarity=0.538 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||+.++..+.+..++.|+... .....+..++..+++.+||++|++.+..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 68999999999999999999999988888777753 33445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|+..+....+ +.|+++|+||+|+.+. +.++.++++++++.++.+.|+||||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 157 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 999999999986 68888877654 6999999999999642 3588999999999855579999997
No 41
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-32 Score=182.53 Aligned_cols=143 Identities=28% Similarity=0.569 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|+.|+|||||++++..+.+..++.|+.+.++....+..++..+.+.+||++|++.+..++..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888898887777777888898999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-----NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+..|+..++.......| ++|+||+|+.. .+....++++++++. .++.+++|||
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~e~SA 148 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA-MKAPLIFCST 148 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999877655566 68899999952 222335678888888 6799999998
No 42
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.9e-32 Score=178.59 Aligned_cols=143 Identities=34% Similarity=0.647 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+||+++|++++|||||++++.++.+.....++.+.++....+.+. +..+++.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988887777888777766666666 777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++++++.+..|+..+..... +.|+++|+||+|+.+++.+..++++++++. .+++++++||
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 145 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKR-LQLPLFRTSV 145 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHH-cCCeEEEEEC
Confidence 9999999999999999999876554 699999999999988788888999999988 7889999997
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2e-32 Score=186.28 Aligned_cols=144 Identities=35% Similarity=0.606 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888988888777777764 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++++|+.+..|+..+..... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-~~~~~~~iSA 148 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-NGMESCLVSA 148 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEEC
Confidence 999999999999999999987653 3478999999999988888999999999998 7889999997
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.2e-32 Score=178.46 Aligned_cols=143 Identities=37% Similarity=0.645 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999998888777666655 334456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQ-WGCPFYETSA 145 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHH-cCCeEEEecC
Confidence 9999999999999998887654 35689999999999987777888888888887 5689999997
No 45
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4e-32 Score=178.53 Aligned_cols=148 Identities=37% Similarity=0.680 Sum_probs=129.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
++..+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 45679999999999999999999999888877777777777667778889999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++++++++++.+.++++||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa 153 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSA 153 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEEC
Confidence 999999999999999999988765442 468999999999986 56788889999998844568999997
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-32 Score=182.87 Aligned_cols=144 Identities=47% Similarity=0.944 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+||+++|++|+|||||++++.+..+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999887753 5566666666666677888889999999999999998889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+++..|+..+......+.|+++|+||+|+..++.+..++++++++. .+++|+++||
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~Sa 145 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE-YGVPFMETSA 145 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH-cCCeEEEEeC
Confidence 9999999999999999999887766799999999999987778888899999988 7889999997
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.6e-32 Score=184.46 Aligned_cols=144 Identities=29% Similarity=0.533 Sum_probs=127.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+++|.+|+|||||++++..+.+..++.++.+.++....+..++..+.+.+||++|++.+..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999998888888888887777777777778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+|+.+..|+..++...+ +.|+++|+||+|+.+ +.+..+++ .+++. .++.|++|||
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~~-~~~~~-~~~~~~e~SA 154 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK-KNLQYYEISA 154 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccCCHHHH-HHHHh-cCCEEEEcCC
Confidence 99999999999999999999987654 699999999999854 44555555 67777 7899999998
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5e-32 Score=178.24 Aligned_cols=143 Identities=41% Similarity=0.688 Sum_probs=126.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|.+|+|||||++++.++.+..++.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998988998888877788888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKV--VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++.+++.+..|++.+... .+.+.|+++|+||+|+.+.+. +..+++++++++ .++.|+++||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 147 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE-MQAEYWSVSA 147 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH-cCCeEEEEEC
Confidence 99999999999999988654 344578999999999965433 456778888887 6789999997
No 49
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=176.78 Aligned_cols=152 Identities=46% Similarity=0.773 Sum_probs=137.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEe-eCCeEEEEEEEeCCCccccccccccccc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE-QDGKTIKLQIWDTAGQERFRTITSSYYR 79 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 79 (153)
|.+-..++++++++|++-+|||+|++.+..+++++-..|+.+.++..+-+. -+|..+++++|||.|++.|+++.+.|++
T Consensus 1 ~epif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyr 80 (213)
T KOG0091|consen 1 YEPIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR 80 (213)
T ss_pred CCcceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh
Confidence 445677899999999999999999999999999999999999888765543 4678899999999999999999999999
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.=++++|||++|++||+.+..|+..-..+.. ....+.|||+|+||..+|+|+.||+++++.+ .++.|+|+||
T Consensus 81 nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-hgM~FVETSa 155 (213)
T KOG0091|consen 81 NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-HGMAFVETSA 155 (213)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-cCceEEEecc
Confidence 99999999999999999999999988866654 3355789999999999999999999999999 9999999997
No 50
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.2e-32 Score=183.71 Aligned_cols=146 Identities=46% Similarity=0.772 Sum_probs=129.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEee-CCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+.+||+++|++|+|||||++++.+..+.....++.+.++....+.. ++..+.+.+||+||++.+..++..+++++|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 3589999999999999999999998888777788877777666665 466789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+|+.+..|+..+..... ...|+++|+||+|+.+.+.+..++++++++. .++.|+++||
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 148 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD-LGMKYIETSA 148 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH-hCCEEEEEeC
Confidence 99999999999999999999876644 4578899999999988788999999999988 7799999997
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=180.71 Aligned_cols=145 Identities=34% Similarity=0.581 Sum_probs=127.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 368999999999999999999999888777777766444 4566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.++++. .+++++++||
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-~~~~~~e~Sa 149 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-FGIPFLETSA 149 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-hCCEEEEeeC
Confidence 999999999999999998887654 35789999999999987778888888899888 6789999997
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=7.2e-32 Score=176.08 Aligned_cols=144 Identities=60% Similarity=0.980 Sum_probs=130.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777788877777777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++.+..|+..+.....++.|+++++||+|+.+.+++..++++++++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 144 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE-HGLPFFETSA 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHH-cCCeEEEEeC
Confidence 999999999999999999887766899999999999987778888899999988 7899999997
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.4e-32 Score=176.96 Aligned_cols=143 Identities=36% Similarity=0.640 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887777667665444 356677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+++.+..+++.++++. .+++|+++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-WGCAFLETSA 145 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH-hCCEEEEeeC
Confidence 9999999999999988887653 35799999999999988777888888888887 7789999997
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=6.2e-32 Score=176.47 Aligned_cols=143 Identities=34% Similarity=0.597 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++..+.+...+.++.. ++....+..++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999888877766654 445566777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+++..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-WGCPFMETSA 145 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-hCCEEEEecC
Confidence 99999999999999988876543 5799999999999977677777788888877 6789999997
No 55
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=8.5e-32 Score=182.60 Aligned_cols=148 Identities=50% Similarity=0.898 Sum_probs=133.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.++.+||+|+|++++|||||++++.+..+.....++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999888777777777777777778888889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.++.++++++++. .+++|+++||
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa 150 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEASA 150 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999999988777666799999999999988888999999999998 7899999997
No 56
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=9e-32 Score=176.20 Aligned_cols=143 Identities=30% Similarity=0.486 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.++.+...+.++....+ ......++..+.+.+||+||++.+..++..++..++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999888777777665333 344556777789999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++.+..|+..++.... ++.|+++|+||+|+.+.+++..+++..++.. .++.|++|||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~SA 147 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE-WNCAFMETSA 147 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH-hCCcEEEeec
Confidence 99999999999999888876542 5689999999999987778888888889888 7789999998
No 57
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.1e-31 Score=174.89 Aligned_cols=144 Identities=38% Similarity=0.701 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++++|||||++++.+.++.....++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888777888887888788888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+..|+..+....+.+.|+++++||+|+.+.+.+..++...+++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-LNAMFIETSA 144 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH-hCCEEEEEeC
Confidence 999999999999999998776665799999999999977777888888888888 7799999997
No 58
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.5e-32 Score=181.44 Aligned_cols=142 Identities=32% Similarity=0.588 Sum_probs=124.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
+|+++|++|+|||||+++|..+.+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777767665433 3455678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++.. .+++|+++||
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~SA 145 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-LGCEFIEASA 145 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH-hCCEEEEecC
Confidence 9999999999999988876542 4689999999999987788888888999888 6789999997
No 59
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.7e-31 Score=178.52 Aligned_cols=143 Identities=31% Similarity=0.537 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
.||+++|++|+|||||++++.++.+...+.++....+. ..+..++..+.+.+||++|++.+..++..+++.++++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 37999999999999999999999988877777765543 45566788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCc------------ccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.+ .+..+++.++++..+.+.|++|||
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 156 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSA 156 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999886 59999887654 69999999999997643 356778888888855589999998
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.1e-31 Score=182.48 Aligned_cols=140 Identities=33% Similarity=0.581 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+++|||||++++..+.+.. ..++.+.++..... ..+.+.+||++|++.+..++..++++++++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988864 45666554443322 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CcccCHHHHHHHHHHhcC----
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVSYETAKVYLLLYTG---- 145 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~-------------------~~~~~~~~~~~~~~~~~~---- 145 (153)
|++++.+|+.+..|+..+......+.|++||+||+|+.+ .++++.++++.++++.++
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999887777665556789999999999976 678999999999998432
Q ss_pred ---------ceeeecCC
Q 031777 146 ---------IFFFYPSP 153 (153)
Q Consensus 146 ---------~~~~~~Sa 153 (153)
+.|+||||
T Consensus 156 ~~~~~~~~~~~~~E~SA 172 (220)
T cd04126 156 DEDLSPAAEKMCFETSA 172 (220)
T ss_pred cccccccccceEEEeeC
Confidence 68999998
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.6e-31 Score=174.25 Aligned_cols=141 Identities=30% Similarity=0.631 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888788888877777777777888899999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++.+..|+..+....+ +.|+++|+||+|+.+ +.+. .++.++++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~-~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRK-KNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999988766 799999999999973 3343 344567766 7899999997
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.3e-31 Score=178.79 Aligned_cols=145 Identities=23% Similarity=0.331 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------ccccccC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYRG 80 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~~ 80 (153)
+||+|+|.+|+|||||++++.++.+...+.|+.+.++....+.+++..+.+.+||+||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988887777766665566778888899999999997544221 2335789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+|+.+..|++.+.... ..+.|+++|+||+|+.+.+.+..+++++++....+++|++|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecC
Confidence 999999999999999999999998887664 4579999999999998777788888888765436899999997
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.9e-31 Score=173.45 Aligned_cols=143 Identities=38% Similarity=0.650 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+...+.++... ........++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999998887766666543 33455667788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++. .+++|+++||
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-WGCPFLETSA 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-cCCEEEEeec
Confidence 9999999999999888886654 34689999999999987777888888899988 7799999997
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.7e-31 Score=172.22 Aligned_cols=144 Identities=50% Similarity=0.833 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++++|||||++++.+..+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999998887766777776677777888888899999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+++++++.....|+..+.....++.|+++++||+|+...+..+.++..+++.. .++.++++||
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE-NGLLFFETSA 145 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH-cCCEEEEEEC
Confidence 999999999999999999888766799999999999987777888888898888 6799999997
No 65
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.3e-31 Score=172.18 Aligned_cols=143 Identities=31% Similarity=0.617 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--cCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+||+++|++|+|||||++++... .+..++.++.+.++....+..+ +..+++.+||+||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 6777888888777766666554 56799999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+++..++++.++.. .+++++++||
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 146 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA-NQLKFFKTSA 146 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHH-cCCeEEEEeC
Confidence 9999999999999999999988765 4589999999999987777888888888777 7789999997
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.3e-31 Score=172.05 Aligned_cols=144 Identities=35% Similarity=0.567 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|++|+|||||++++.+..+..+..++.+..+ ......++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999998877766666655333 34556788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+.+..|+..+.... ..+.|+++++||+|+...+.+..+++.++++. .+++++++||
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 146 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK-LKIPYIETSA 146 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH-cCCcEEEeeC
Confidence 99999999999999998887653 35689999999999987777888888899888 7789999997
No 67
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=9.5e-31 Score=172.57 Aligned_cols=143 Identities=30% Similarity=0.498 Sum_probs=122.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+|++++|++|+|||||++++.++.+..++.++.. +.....+..++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999998888877777653 344456777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+. .|+..++... ++.|+++++||+|+.+ ++.+..++++++++..+...|++|||
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa 156 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSA 156 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeC
Confidence 999999999875 6888887643 3689999999999963 46788899999999844449999997
No 68
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=7e-31 Score=170.85 Aligned_cols=138 Identities=21% Similarity=0.362 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|+.|+|||||++++..+.+.....|+. ..+ ...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999888776654432 233 45677888889999999999964 34678899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC--CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA--NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+++..|++.+..... ++.|+++|+||.|+.. .++++.+++++++++..++.|+||||
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 99999999999999999987754 5689999999999853 57899999999998745799999998
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.98 E-value=1.1e-30 Score=170.43 Aligned_cols=140 Identities=36% Similarity=0.640 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+|+|||||++++....+.+...++...++.......++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998888777777666666666777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++.+..|+..++...+ +.|+++|+||+|+.+. ..++...+++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~---~~~~~~~~~~~-~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS---VTQKKFNFAEK-HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh---HHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999977544 5899999999998432 23445667766 6789999997
No 70
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1e-30 Score=175.21 Aligned_cols=142 Identities=26% Similarity=0.440 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcC-----cCCCCcceeeee-EEEEEE--------EeeCCeEEEEEEEeCCCcccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLL-RFADD-----SYIESYISTIGV-DFKIRT--------VEQDGKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~d~~g~~~~~~ 72 (153)
.+||+++|+.++|||||+. ++.++ .+..++.|+.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 56543 344556666642 211111 25688899999999999875 3
Q ss_pred cccccccCccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC-------------------CcccC
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA-------------------NKVVS 132 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~-------------------~~~~~ 132 (153)
....+++++|++|+|||++++.||+.+. .|++.++...+ +.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 5567899999999999999999999997 59998877654 689999999999964 47899
Q ss_pred HHHHHHHHHHhcCceeeecCC
Q 031777 133 YETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++++++++. .+++|+||||
T Consensus 159 ~~e~~~~a~~-~~~~~~E~SA 178 (195)
T cd01873 159 PETGRAVAKE-LGIPYYETSV 178 (195)
T ss_pred HHHHHHHHHH-hCCEEEEcCC
Confidence 9999999999 7889999998
No 71
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=2e-30 Score=170.22 Aligned_cols=151 Identities=50% Similarity=0.885 Sum_probs=131.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|. +....++++++|++|+|||||++++....+.....++.+.++....+.+++..+.+.+||+||+..+...+..+++.
T Consensus 1 ~~-~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 1 ME-DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred CC-CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC
Confidence 44 34567999999999999999999999877776666777767777778888888899999999999999888999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++|||++++.+++.+..|+..++.....+.|+++|+||+|+.+.+++..+..+.+.+. ....+++|||
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa 151 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDA-QDMYYLETSA 151 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cCCeEEEeeC
Confidence 99999999999999999999999999887776799999999999987777887777888777 6689999997
No 72
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.3e-32 Score=165.86 Aligned_cols=149 Identities=46% Similarity=0.888 Sum_probs=143.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
++++.+|.+|+|+-|+|||+|++.+...++......+.+.++..+.+.+.++.+++++||+.|++.|+...+.|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 56788999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+.|||++.+.++..+..|+..-+....++..+++++||+|+..++.++.+++.+++++ +++.|.|+||
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faee-ngl~fle~sa 155 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-NGLMFLEASA 155 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhh-cCeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999997
No 73
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.1e-30 Score=174.13 Aligned_cols=142 Identities=30% Similarity=0.601 Sum_probs=120.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+||+|+|++|+|||||++++.++.+...+.++...++.. .+... +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999999888877777655543 34444 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC----cccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 88 YDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~----~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
||++++.+|+.+. .|+..+.... ++.|+++|+||.|+.+. +.+..+++++++.. .++ ++++|||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa 149 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-QGAFAYLECSA 149 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH-cCCcEEEEccC
Confidence 9999999999986 5888887654 46899999999999653 35778899999988 566 9999997
No 74
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=4.1e-31 Score=173.01 Aligned_cols=142 Identities=35% Similarity=0.525 Sum_probs=120.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~v~ 88 (153)
||+++|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++++|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666554333 34566788888999999999985 3455677899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++++++. .+++|+++||
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 145 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASE-LGCLFFEVSA 145 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHH-cCCEEEEeCC
Confidence 9999999999999998887764 35699999999999987778888999999988 6789999997
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=6.3e-31 Score=181.77 Aligned_cols=144 Identities=24% Similarity=0.389 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.++.+...+.++.. ++....+.+++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888877777765 455566778888899999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRY---------ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~---------~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+..|+..+... ...+.|+++|+||+|+.+.+++..+++.+++....++.++++||
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSA 153 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSA 153 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeC
Confidence 999999999999998888654 22468999999999998777788888888876535789999997
No 76
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=1.3e-30 Score=169.75 Aligned_cols=142 Identities=35% Similarity=0.626 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.++.+.....++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999888777777665443 455667887888999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+ +.+..+++.++++. .+++++++||
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKS-YGIPYIETSA 144 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHH-hCCeEEEecC
Confidence 9999999999998988887664 35789999999999865 56777888888887 7889999997
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=8.1e-31 Score=176.12 Aligned_cols=136 Identities=28% Similarity=0.583 Sum_probs=121.3
Q ss_pred EcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 031777 14 IGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ 93 (153)
Q Consensus 14 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 93 (153)
+|..++|||||++++..+.+...+.++.+.++....+.+++..+++.+||++|++.+..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888888888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 94 ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 94 ~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|..+..|++.++...+ +.|++||+||+|+.+ +.+..+. ..+++. .++.|++|||
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v~~~~-~~~~~~-~~~~~~e~SA 136 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RKVKAKS-ITFHRK-KNLQYYDISA 136 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccCCHHH-HHHHHH-cCCEEEEEeC
Confidence 999999999999988764 699999999999864 4555544 467777 8899999998
No 78
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.8e-33 Score=175.36 Aligned_cols=150 Identities=42% Similarity=0.812 Sum_probs=137.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC---------CeEEEEEEEeCCCccccccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD---------GKTIKLQIWDTAGQERFRTI 73 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~~g~~~~~~~ 73 (153)
.++++.+|.+.+|++|+|||+|+.++..+++.....++.++++..+.+.++ ++.+.+++||+.|++.|++.
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 457888999999999999999999999999999999999999987776654 34588999999999999999
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecC
Q 031777 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (153)
...+++.+=+++++||++++.||-+++.|+.+++.+.- .++-+++.+||+|+.+.+.|+.+++.++++. .+++|||+|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k-yglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK-YGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH-hCCCeeeec
Confidence 99999999999999999999999999999999987642 4577999999999999999999999999999 999999999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 163 A 163 (219)
T KOG0081|consen 163 A 163 (219)
T ss_pred c
Confidence 7
No 79
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=2.1e-30 Score=168.73 Aligned_cols=144 Identities=42% Similarity=0.746 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+.....++.........+...+..+.+.+||+||++.+...++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666666666666666777787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++.+..|+..+......+.|+++++||+|+...+++..++.+++++. .++.++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 144 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKS-VGAKHFETSA 144 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999887766799999999999987777888888888887 7889999986
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.7e-30 Score=171.36 Aligned_cols=141 Identities=33% Similarity=0.653 Sum_probs=120.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 90 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 90 (153)
|+|+|++|+|||||++++.++.+...+.++....+ ...+..++..+.+.+||+||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777665443 34566788889999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 91 TDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 91 ~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++++|+.+. .|+..+....+ +.|+++|+||+|+... +.++.++++++++..+...|++|||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999986 59998877654 6999999999999652 3488889999999844459999997
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=3.4e-30 Score=169.88 Aligned_cols=143 Identities=33% Similarity=0.573 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888777766654333 345667888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|++.++.. .++.|+++|+||+|+.+. +.++.++++++++..+..+|++|||
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 156 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSA 156 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecC
Confidence 999999999886 588888766 557999999999998543 3677889999998845568999997
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=3.5e-30 Score=167.83 Aligned_cols=143 Identities=55% Similarity=0.953 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++++|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998877666777777777666777888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+.+..++..++++. .+++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARK-HNMLFIETSA 144 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHH-cCCEEEEEec
Confidence 9999999999999999998775 3679999999999986 345677888899988 7999999997
No 83
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=2.2e-30 Score=173.98 Aligned_cols=143 Identities=24% Similarity=0.396 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+||+++|++++|||||++++.++.+..++.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877766666553 567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEecCCCCCCcccCHHH----HHHHH
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-------------------SDNVNKLLVGNKCDLTANKVVSYET----AKVYL 140 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~~~ilv~~K~D~~~~~~~~~~~----~~~~~ 140 (153)
+|+|||++++.||+++..|+..+.... ..+.|++|||||+|+.+++.+..+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999996642 2468999999999998766655553 44566
Q ss_pred HHhcCceeeecC
Q 031777 141 LLYTGIFFFYPS 152 (153)
Q Consensus 141 ~~~~~~~~~~~S 152 (153)
++ .+++.++.+
T Consensus 161 ~~-~~~~~i~~~ 171 (202)
T cd04102 161 EQ-GNAEEINLN 171 (202)
T ss_pred Hh-cCCceEEEe
Confidence 66 777766553
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=5.5e-30 Score=173.91 Aligned_cols=149 Identities=52% Similarity=0.828 Sum_probs=127.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
...+..+||+|+|++|+|||||++++.+..+. ...++.+.++....+..++..+.+.+||+||++.+..++..+++++|
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34556789999999999999999999987763 55667776677677778888889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQ-WLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++++|+.+.. |...+.... ..+.|+++|+||+|+...+.+..+++..++.. .++.|+++||
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-~~~~~~e~SA 159 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-HGCLFLECSA 159 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999875 666665543 24589999999999987777888888888888 7889999997
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=5.1e-30 Score=168.33 Aligned_cols=144 Identities=36% Similarity=0.617 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999998888777666665433 456667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++....|...+.... ..+.|+++++||.|+.+.+.+..+++.++++.+..++++++||
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 9999999999999998887643 3579999999999998777888888888888844489999998
No 86
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=6.7e-30 Score=171.21 Aligned_cols=143 Identities=31% Similarity=0.623 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+||+++|++|+|||||++++.++.+.. .+.++.+..+....+..++..+.+.+||++|++.+..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988764 5667777667677788889889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----cccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+|+.+..|+..++... ++.|+++|+||+|+.+. +++..+++++++.. .++.++++||
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 148 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-IKAQHFETSS 148 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999987754 36899999999998542 45667788888887 7789999997
No 87
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.5e-31 Score=167.51 Aligned_cols=149 Identities=36% Similarity=0.708 Sum_probs=140.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.+...+|++++|..-+|||+|+-++..++|.....++....+..+.+.+.+....+.+|||.|++.|...-+.|++..++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 35677999999999999999999999999988877887777778888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|||++|+.||+.++.|...++.+.+..+-+++|+||+||.++++|+.++++.+++. -+..|+++||
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-vGA~y~eTSA 157 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAES-VGALYMETSA 157 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHh-hchhheeccc
Confidence 99999999999999999999999999998899999999999999999999999999999 9999999997
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.5e-30 Score=169.34 Aligned_cols=145 Identities=22% Similarity=0.270 Sum_probs=122.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+.+||+++|++|+|||||++++.++.+. .++.|+.+..+....+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999887 77888887777666777888888999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
|+|||.+++.+++.+..|+..+.. ..+.|+++|+||+|+.+.+++..++.+++++. .++ .++++||
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 148 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK-LGLPPPLHFSS 148 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHH-cCCCCCEEEEe
Confidence 999999999999998888876633 23689999999999976665555566777777 555 4689987
No 89
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=8.4e-30 Score=167.57 Aligned_cols=145 Identities=39% Similarity=0.704 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.++++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777777777777777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+++....|...+..... .+.|+++|+||+|+.+++..+.++.+.+.+......++++||
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 149 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSA 149 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEEC
Confidence 99999999998888887655443 368999999999998666777888888888834489999997
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.2e-29 Score=164.21 Aligned_cols=144 Identities=60% Similarity=1.024 Sum_probs=129.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++++|||||++++.+..+.....++.+.+.....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998888777777777777777778788899999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++++.+..|+..+......+.|+++++||+|+........++.++++.. .+.+++++||
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa 144 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-NGLLFFETSA 144 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH-cCCeEEEEec
Confidence 999999999999999999888766799999999999975677888999999988 8899999997
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=9.9e-30 Score=173.62 Aligned_cols=142 Identities=28% Similarity=0.423 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR-GAHGIII 86 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~-~~~~~i~ 86 (153)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||+||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 5555555445666677788888999999999998 233445666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+++..+++++++.. .+++|+++||
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~SA 145 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-FDCKFIETSA 145 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-cCCeEEEecC
Confidence 9999999999999999998877643 5699999999999988888888888899888 7889999997
No 92
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=170.24 Aligned_cols=145 Identities=38% Similarity=0.601 Sum_probs=133.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++++++|.+|+|||+|..++..+.+...+.|+.+ +...+.+.+++..+.+.++|+.|++.+..+...++.+.|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999988 5566788889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||+++++.||+.+..+++.+.... ....|+++||||+|+...++|+.+++++++.. .+++|+|+||
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~-~~~~f~E~Sa 147 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARS-WGCAFIETSA 147 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh-cCCcEEEeec
Confidence 999999999999999999994443 35589999999999999899999999999999 8888999997
No 93
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=3.5e-29 Score=176.23 Aligned_cols=140 Identities=25% Similarity=0.499 Sum_probs=120.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-------------CeEEEEEEEeCCCcccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-------------GKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~ 72 (153)
...+||+++|+.|+|||||++++.++.+...+.++.+.++....+.++ +..+.+.+||++|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 346899999999999999999999998888888888877766666654 2468899999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEecCCCCCCc---c---cCHH
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------DNVNKLLVGNKCDLTANK---V---VSYE 134 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~~~ilv~~K~D~~~~~---~---~~~~ 134 (153)
++..++++++++|+|||++++.+|+.+..|++.+..... .+.|++||+||+||.+.+ . +..+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999987631 258999999999996642 2 4689
Q ss_pred HHHHHHHHhcCc
Q 031777 135 TAKVYLLLYTGI 146 (153)
Q Consensus 135 ~~~~~~~~~~~~ 146 (153)
++++|++. .++
T Consensus 179 ~a~~~A~~-~g~ 189 (334)
T PLN00023 179 AARQWVEK-QGL 189 (334)
T ss_pred HHHHHHHH-cCC
Confidence 99999998 554
No 94
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=4.3e-30 Score=168.16 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
+|+++|++|+|||||++++.+..+...+.|+.+... . .+++..+++.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999998877777777766432 2 234455899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH----HHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+++.++.....|+..+.... ++.|+++|+||.|+...+.+.. .++..++++ .++.+++|||
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa 142 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARG-RRWILQGTSL 142 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC-CceEEEEeee
Confidence 999999999888888776443 5799999999999976554332 234566666 7889999987
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.8e-28 Score=161.76 Aligned_cols=143 Identities=31% Similarity=0.594 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
.||+++|++|+|||||++++.+..+...+.++....+. ..+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999998888777777654443 45667888889999999999999988888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|+..++.... +.|+++|+||+|+.+. ..+..++++++++......+++|||
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 157 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSA 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecc
Confidence 999999998885 58888876543 6899999999998642 2356778888888845568999997
No 96
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=166.92 Aligned_cols=145 Identities=33% Similarity=0.594 Sum_probs=130.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
..+|++|+|+..+|||+|+-.+..+.|+.++.|+.. +-....+.++ +..+.+.+|||.|+++|...++..+..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999999999987 4445667784 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecC
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 152 (153)
+||++.++.||+++. .|++.++.+++ +.|++|||+|.||++. ..++.+++++++++.+...|+|||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999965 69999999996 6999999999999842 368899999999996668999999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 161 a 161 (198)
T KOG0393|consen 161 A 161 (198)
T ss_pred h
Confidence 7
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=2e-28 Score=159.06 Aligned_cols=142 Identities=39% Similarity=0.638 Sum_probs=123.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|++|+|||||++++++..+.....++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998777767666655 3444556677777899999999999988888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++++++..+..|+..+..... .+.|+++++||+|+.+.+.+..++++.++.. .+.+++++||
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~ 143 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-WGCPFIETSA 143 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-cCCcEEEecc
Confidence 9999999999998888877765 5799999999999988778888999999888 6689999997
No 98
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=6.3e-28 Score=161.02 Aligned_cols=143 Identities=33% Similarity=0.551 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
.|++|+|++|+|||||++++..+.+..+..++....+. ..+..++..+.+.+||++|++.+......++..+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999987777666665543333 35566777889999999999888877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC----------CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++++|+.+. .|+..++...+ +.|+++|+||+|+.+ .+.++.++++++++.+....||+|||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999986 59999987655 599999999999854 34567788899998844568999997
No 99
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=9.1e-31 Score=159.83 Aligned_cols=140 Identities=45% Similarity=0.890 Sum_probs=131.2
Q ss_pred EEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 031777 13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 91 (153)
++|++++|||+|+-++..+.+ .....++.++++.-+-+..++..+++++||+.|++.|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999998887766 4455688899999888999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 92 DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 92 ~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++.||++.+.|+.++.......+.+.+++||+|+..++.|..++++++++. .+++|.|+||
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~-y~ipfmetsa 142 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA-YGIPFMETSA 142 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHH-HCCCceeccc
Confidence 999999999999999999888899999999999999999999999999999 9999999997
No 100
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=6.5e-28 Score=157.29 Aligned_cols=143 Identities=38% Similarity=0.620 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++....+.....++.... .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 489999999999999999999888776666655433 3345567888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+....++...+.+. .+++++++||
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 144 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-WGVPYVETSA 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hCCeEEEeeC
Confidence 9999999999999888887764 35699999999999977566777888888887 7789999997
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=7.4e-28 Score=157.79 Aligned_cols=142 Identities=25% Similarity=0.364 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+|+|||||++++.++.+.....++. ... .....+++..+.+.+||+||...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988865533322 122 233445667789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CHHHHHHHHHHhcC-ceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKVYLLLYTG-IFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa 153 (153)
|++++.+++.+. .|++.++.... +.|+++|+||+|+.+.+.. ..++...++..+.. ..+++|||
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSA 146 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecc
Confidence 999999999975 68888877654 6999999999999765442 23344444454344 38999997
No 102
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=2.3e-27 Score=155.84 Aligned_cols=143 Identities=33% Similarity=0.587 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||+++|.+..+.....++... ........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 58999999999999999999998876666665543 33345567788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCc-----------ccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK-----------VVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++.+|.... .|+..+..... +.|+++|+||+|+.+.+ .+..+++.+++...+..+|+++||
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 155 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSA 155 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeec
Confidence 999999998765 58877776554 69999999999996543 346778888888844449999997
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1.1e-27 Score=161.20 Aligned_cols=143 Identities=29% Similarity=0.423 Sum_probs=117.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|++|+|||||++++.+..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766655543 3445567778888899999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCC-CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA-NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++..+......+..++++||
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 9999999999999888876654 5799999999999965 45566666555544225678999997
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.1e-27 Score=158.76 Aligned_cols=143 Identities=36% Similarity=0.550 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
.||+++|++|+|||||++++.+..+.....++....+ ...+..++..+.+.+||+||+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887766666554333 345567777789999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+++..+++.+..|+..+.... ..+.|+++++||+|+.+.+.+..++...+++. .+++++++||
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-WGAAFLESSA 145 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-cCCeEEEEeC
Confidence 9999999999998877776553 35689999999999977677777777888877 6789999997
No 105
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=4.6e-27 Score=160.02 Aligned_cols=146 Identities=32% Similarity=0.563 Sum_probs=124.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.....+|++++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34556999999999999999999988888888888888888887777778888999999999999999888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|||++++.+|..+..|+..+....+ +.|+++++||+|+.+ +.+..+. ..+++. .++.++++||
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~-~~~~~~e~Sa 150 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVKARQ-ITFHRK-KNLQYYDISA 150 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCCHHH-HHHHHH-cCCEEEEEeC
Confidence 9999999999999999999999887654 689999999999854 3343333 456666 7889999997
No 106
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=7.9e-28 Score=158.00 Aligned_cols=140 Identities=25% Similarity=0.446 Sum_probs=108.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|++++|||||++++....+. .+.|+.+.++. .+.. ..+.+.+||+||++.+...++.+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999876654 34555554443 3333 34889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
|||++++.++++...|+..+.. ....+.|++||+||+|+.+ .+..++++++.+. ...+.++++||
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SA 152 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCA 152 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeC
Confidence 9999999999988776665543 2234689999999999864 3556666665431 13457899997
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=8e-28 Score=156.66 Aligned_cols=138 Identities=25% Similarity=0.446 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+++|||||++++..+.+. .+.|+.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877775 35566654432 3333 3488999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCcccCHHH-HHHHHHH---hcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYET-AKVYLLL---YTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ilv~~K~D~~~~~~~~~~~-~~~~~~~---~~~~~~~~~Sa 153 (153)
|++++.+++....|+..+.. ....+.|++|++||+|+.+. ...++ ...+... .+.+.++++||
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeC
Confidence 99999999988876666533 23345899999999999653 22222 2333211 13456789997
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=5.9e-27 Score=154.47 Aligned_cols=141 Identities=27% Similarity=0.439 Sum_probs=109.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.+..+ ....++.+ +....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3468999999999999999999997654 34445554 3333444554 78999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...++.+++... ..+++++++||
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSA 157 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccC
Confidence 999999999999888877776432 2356999999999999653 245555555431 15678999997
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=7.6e-27 Score=153.45 Aligned_cols=137 Identities=23% Similarity=0.448 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|++++|||||++++.+..+.. +.|+.+..+. .+.+. .+.+.+||+||+..+...+..++.++|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 58999999999999999999876543 5566554443 33333 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh-----cCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY-----TGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa 153 (153)
.+++.++..+..|+..+.... ..+.|+++|+||+|+.+ .++.++++++++.. ..+.+++|||
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDA 143 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence 999999999988888775432 24589999999999864 46777777776531 1236889997
No 110
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.3e-27 Score=157.88 Aligned_cols=140 Identities=23% Similarity=0.403 Sum_probs=105.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..+||+++|++|+|||||++++..+.+. .+.|+.+.++. ....+ .+.+.+||+||++.+...+..++++++++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999876664 35566654443 33333 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
|||++++.+++....|+..+... ..++.|++||+||.|+.+.. ..++....... ...+.++++||
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeC
Confidence 99999999999988877766432 23468999999999996532 23332222211 13445778887
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=8.5e-27 Score=155.05 Aligned_cols=143 Identities=27% Similarity=0.463 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEee-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
.++|+++|++|+|||||++++....+... .|+.+.+.....+.. ++..+.+.+||+||++.+...+..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998776644 455554444444433 4466899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH-----hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL-----YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 153 (153)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+ .+..++.+.+... ...++++++||
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 999999999988888887775543 35689999999999864 3444555544431 12356889997
No 112
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=1e-26 Score=154.39 Aligned_cols=140 Identities=23% Similarity=0.404 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..+||+++|+.++|||||++++..+.+. ...|+.+.++ ..+..+ .+.+.+||+||++.+..++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999877765 3456665443 233343 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
|||+++++++.....++..+... ..++.|++|++||.|+.+. ...++..+.... ...+.+++|||
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999887766665332 2246899999999998754 344444443322 01235678987
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=5.3e-27 Score=153.95 Aligned_cols=139 Identities=23% Similarity=0.300 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
+|+++|++++|||||++++.+. +...+.|+.+.. ...+...+ +.+.+||+||+..+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999976 566666666543 33444443 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccC-HH---HHHHHHHH-hcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVS-YE---TAKVYLLL-YTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~-~~---~~~~~~~~-~~~~~~~~~Sa 153 (153)
++++.+++.+..|+..+..... .+.|+++|+||.|+.+.+... .. .+..+++. ...+.+++|||
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa 145 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSA 145 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEc
Confidence 9999999999988888865432 468999999999997643211 11 12233322 12457888987
No 114
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=8.2e-27 Score=154.98 Aligned_cols=139 Identities=25% Similarity=0.428 Sum_probs=103.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..+||+++|++++|||||++++..+.+.. ..|+.+.++. .+.. ..+.+.+||+||++.++..+..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998776654 4556554433 3333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHH-----HHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYL-----LLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa 153 (153)
|+|++++.++.....++..+... ...+.|++||+||.|+.+. ...++..+.. +. ..+.++++||
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~Sa 160 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQ-RNWYIQGCCA 160 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccC-CcEEEEeeeC
Confidence 99999999999887766655322 2245899999999998642 2233322221 12 2346778887
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=2.9e-26 Score=149.36 Aligned_cols=138 Identities=22% Similarity=0.355 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc-CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+|+++|++++|||||++++.+.. ......|+.+.... .+.. ..+.+.+||+||+..+...+..+++.++++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999865 34455566553332 2333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCCCcccCHHHHHHHHH----HhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETAKVYLL----LYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 153 (153)
|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ....+.++++||
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa 146 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNA 146 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeC
Confidence 9999999988888877775432 3469999999999996532 2222222211 112456899997
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=2.8e-25 Score=146.69 Aligned_cols=138 Identities=22% Similarity=0.335 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|++++|||||++++..+.+.. ..++.+.+. ..+.++ .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999877654 355555433 334444 37899999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHH-HHHH----HHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETA-KVYL----LLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~~Sa 153 (153)
+|+++++++.....++..+... ...+.|+++++||+|+.+. .+.++. +.+. +. .++.+++|||
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~SA 158 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRD-HTWHIQGCCA 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccC-CceEEEeccc
Confidence 9999999988877766665433 2346899999999998652 233332 3332 22 4567999997
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=1.3e-25 Score=146.06 Aligned_cols=137 Identities=26% Similarity=0.443 Sum_probs=102.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
+|+++|++|+|||||++++.+..+... .++.+.++ ..+... ..+.+.+||+||+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998876533 45554333 233332 34789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHH------HHHhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVY------LLLYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa 153 (153)
++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++.... ... .++.+++|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa 144 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSD-RDWYVQPCSA 144 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCC-CcEEEEeccc
Confidence 999999988887777664432 256899999999998642 222333222 222 3557999997
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.4e-25 Score=145.82 Aligned_cols=138 Identities=29% Similarity=0.434 Sum_probs=103.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSY------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+|+++|++|+|||||++++.+... ...+.++.+... ..+.+++ ..+.+||+||+..+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976322 222334444333 3344444 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh------cCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY------TGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa 153 (153)
+++|+|+++++++.....|+..+.... ..+.|+++++||+|+.+ ....++..++.+.. .+++++++||
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 999999999988888887777765432 35689999999999865 34445555554331 3568999997
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.3e-25 Score=145.87 Aligned_cols=137 Identities=28% Similarity=0.431 Sum_probs=104.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|.+|+|||||++++.+... ....++.+... ..+.+.. ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998773 34445554333 3344443 789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
++++.++.....|+..+.... ..+.|+++++||+|+.+.. ..++..+.... ...++++++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999999888777765533 3578999999999987533 33333333321 14568999987
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=4.1e-25 Score=147.68 Aligned_cols=140 Identities=30% Similarity=0.409 Sum_probs=109.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+..+|+++|++|+|||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||+..+...+..+++.++++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987663 34455443 233455555 678999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh---------------cCceeee
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY---------------TGIFFFY 150 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 150 (153)
|+|.+++.++.....|+..+.... ..+.|+++++||+|+.+ .+..++.+++.... ..+.+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 999999999988777777765433 35689999999999864 56667777666421 2356899
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
|||
T Consensus 171 ~Sa 173 (190)
T cd00879 171 CSV 173 (190)
T ss_pred eEe
Confidence 997
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.93 E-value=1.5e-24 Score=143.29 Aligned_cols=142 Identities=36% Similarity=0.525 Sum_probs=109.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....++|+++|+.+|||||+++++..+... ...||.+ +....+.+++ +.+.+||.+|+..++..|+.++.+++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 356799999999999999999999976543 3456655 4455666666 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH-----hcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL-----YTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa 153 (153)
|||+|.++++.+.+....+..+... ...+.|+++++||.|+.+ ..+.++....... ...+.++.|||
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 9999999999998888766666443 235799999999999865 3445555543321 13556777776
No 122
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=1.2e-24 Score=143.67 Aligned_cols=122 Identities=39% Similarity=0.654 Sum_probs=109.7
Q ss_pred CcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 031777 31 DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA 110 (153)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 110 (153)
+.|.+++.|+.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788888888887888889999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 111 SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 111 ~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+.|++||+||+|+.+.+.+..+++..+++. .++.|+||||
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~-~~~~~~e~SA 124 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQE-YNTMFHETSA 124 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHH-cCCEEEEEEC
Confidence 56789999999999987778899999999988 6889999998
No 123
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-27 Score=151.98 Aligned_cols=148 Identities=30% Similarity=0.568 Sum_probs=136.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+.+..+|++|+|+.++||||+|++++.+-|...+..+.+.++....+.+++..+.+.+||+.|++.+..+...|++++.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45667999999999999999999999999998999999988888888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++||+.+|+.||+....|+..+..-.++ +|.++|-||+|+.+..+++.++++.+++. .++-++.+|+
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~-IPtV~vqNKIDlveds~~~~~evE~lak~-l~~RlyRtSv 163 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETER-IPTVFVQNKIDLVEDSQMDKGEVEGLAKK-LHKRLYRTSV 163 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhcc-CCeEEeeccchhhHhhhcchHHHHHHHHH-hhhhhhhhhh
Confidence 99999999999999999999999887774 99999999999999999999999999988 7777777764
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=3e-25 Score=144.25 Aligned_cols=137 Identities=28% Similarity=0.412 Sum_probs=98.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
||+++|++++|||||++++....+.. ..++.+.++ ..+.. ..+.+.+||+||+..+..++..++..++++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998766543 344444333 23333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEecCCCCCCcccCHHHHH-HHHHH---hcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAK-VYLLL---YTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~-~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~-~~~~~---~~~~~~~~~Sa 153 (153)
++++.++.....++..+ +.....+.|+++|+||+|+.+.. ..++.. .+... ..+.+++++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeec
Confidence 99998887765554443 33333468999999999986432 222222 22111 12357999997
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=2e-24 Score=143.78 Aligned_cols=141 Identities=24% Similarity=0.314 Sum_probs=106.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+.. ..|+.+. ....+...+ +++.+||+||+..+...+..+++++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345899999999999999999999876542 3344332 223344444 78999999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH-----------hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL-----------YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa 153 (153)
+|+|++++.++.....++..+... ...+.|+++|+||+|+.. .++.++.++.... .+.+.+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999998887777666432 224689999999999853 4556665544321 13556888887
No 126
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=8.3e-25 Score=135.88 Aligned_cols=114 Identities=35% Similarity=0.653 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC--CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
||+|+|++|+|||||+++|.+.... ....+..+.++.............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999987765 11122223334444555666666799999999998888888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEecCC
Q 031777 88 YDVTDQESFNNVKQ---WLNEIDRYASDNVNKLLVGNKCD 124 (153)
Q Consensus 88 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~ilv~~K~D 124 (153)
||++++.+++.+.. |+..++.... +.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999998754 5666665544 499999999998
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=6.5e-24 Score=136.97 Aligned_cols=143 Identities=34% Similarity=0.506 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|.+|+|||||++++....+..+..++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.+++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999988877777777777777666777777788999999999999888888899999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 89 DVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|.... .++.... .|...+......+.|+++++||+|+.... ...+....+... ....++++||
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~-~~~~~~~~sa 146 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKL-NGEPIIPLSA 146 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhc-cCCceEEeec
Confidence 99877 6666654 67777766655478999999999996543 333333333333 6778999987
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=2.5e-24 Score=135.64 Aligned_cols=141 Identities=26% Similarity=0.416 Sum_probs=110.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
+++.++|+++|..||||||++++|.+.. .....|+.+ +..+...+++ +.+.+||.+|+..+++.|+.|+..+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999999855 334455655 4455555555 8899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHH------HHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYET------AKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~------~~~~~~~~~~~~~~~~Sa 153 (153)
|+|+|.+|+..+++....+..+-.-.. .+.|+++++||.|+.. .+..++ ...+++. .++..+.|||
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks-~~~~l~~cs~ 160 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKS-HHWRLVKCSA 160 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccc-cCceEEEEec
Confidence 999999999999887766655533221 4589999999999963 122222 3455566 7889999986
No 129
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=8e-24 Score=144.29 Aligned_cols=122 Identities=48% Similarity=0.788 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|+.|+|||||++++....+...+.++....+...........+++.+||++|++.++.++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888877777766666665578999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 88 YDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 88 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
+|..+ ..+++....|...+......+.|+++++||+|+...+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 99999 4455556779999988876679999999999997753
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=7e-24 Score=138.97 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccc---------cccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS---------SYYR 79 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---------~~~~ 79 (153)
.+|+++|++|+|||||++++.+..+.....+..+.+........ ..+.+.+||+||......... ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999987664332222222222223323 347899999999743111000 0112
Q ss_pred CccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++|+|+|++++.++ +....|+..++... .+.|+++|+||+|+.+.+.+.. .+++... .+.++++|||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~-~~~~~~~~Sa 150 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEEL-EGEEVLKIST 150 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhh-ccCceEEEEe
Confidence 35899999999987654 55566777776544 3689999999999976544332 4556655 7889999997
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=3.4e-24 Score=138.63 Aligned_cols=138 Identities=25% Similarity=0.441 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
.|+++|++|+|||||++++.+..+.....++.+..+. .+...+ +.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999999998888777777665443 333333 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHH----HhcCceeeecCC
Q 031777 90 VTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLL----LYTGIFFFYPSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 153 (153)
++++.++.....|+..+... ...+.|+++|+||+|+.+... .++..+... ....++++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEe
Confidence 99999988877766665432 225689999999999865432 222221111 113467888886
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.3e-23 Score=137.87 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSY---YRGAH 82 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----~~~~~~~~---~~~~~ 82 (153)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+++. ..+.+||+||... .+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999875432111121222222222333332 4789999999642 12223333 34599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++|+|++++ .+++.+..|.+.+..... .+.|+++|+||+|+.+...+ .+..+.+.....+.+++++||
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISA 153 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEec
Confidence 99999999998 788888889888876643 36899999999999765443 333444444423678999987
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=1.9e-23 Score=141.09 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=98.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc---------ccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITS 75 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~ 75 (153)
.+..++|+|+|++|+|||||++++.+........+..+.+.....+.+++. ..+.+||+||.... ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 355689999999999999999999987643322222222333334444442 37889999997321 1111
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+..+|++++|+|.+++.++.....|.+.+......+.|+++|+||+|+.+..... .+... .+.+++++||
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~-~~~~~~~~Sa 187 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEA-GRPDAVFISA 187 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhc-CCCceEEEEc
Confidence 125679999999999998888887778887777655568999999999986543221 33444 5678999997
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=5.1e-23 Score=136.20 Aligned_cols=138 Identities=21% Similarity=0.265 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--C-----CCCccee------eeeEEEEEE--Eee---CCeEEEEEEEeCCCcccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS--Y-----IESYIST------IGVDFKIRT--VEQ---DGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~--~-----~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~~~d~~g~~~~ 70 (153)
.+|+++|.+++|||||+++|.+.. + ...+.++ .+.++.... ..+ ++..+.+.+||+||++.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998632 1 1111111 112222222 222 566789999999999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc---e
Q 031777 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI---F 147 (153)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~---~ 147 (153)
...+..++..+|++|+|+|+++..++.....|.... ..+.|+++|+||+|+.+.+ ..+..+++++. .++ .
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~-~~~~~~~ 153 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDV-LGLDPSE 153 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHH-hCCCccc
Confidence 998999999999999999999876666655554332 2368999999999986432 12233455554 344 4
Q ss_pred eeecCC
Q 031777 148 FFYPSP 153 (153)
Q Consensus 148 ~~~~Sa 153 (153)
++++||
T Consensus 154 ~~~~Sa 159 (179)
T cd01890 154 AILVSA 159 (179)
T ss_pred EEEeec
Confidence 899997
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=5.2e-23 Score=134.09 Aligned_cols=137 Identities=17% Similarity=0.160 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---cCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
.|+++|++++|||||+++|.+. .+..+..++.+.+.....+.+.. ...+.+||+||++.+......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999863 23333333333344444444442 3589999999999887766777889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHHh--cCceeeecCC
Q 031777 87 VYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~~~--~~~~~~~~Sa 153 (153)
|+|+++ +.+.+.+ ..+... . ..|+++++||+|+.+... ...++..+..+.. .+.+++++||
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSA 148 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeC
Confidence 999986 3333322 222221 1 248999999999965421 2223333443331 4678999997
No 136
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.90 E-value=2e-22 Score=128.87 Aligned_cols=139 Identities=53% Similarity=0.846 Sum_probs=106.3
Q ss_pred EEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 031777 13 LIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 91 (153)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+......++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998766 44444444 5566666666667789999999999888887788899999999999999
Q ss_pred ChhhHHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH-HHHHHHHhcCceeeecCC
Q 031777 92 DQESFNNVKQW-LNEIDRYASDNVNKLLVGNKCDLTANKVVSYET-AKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 92 ~~~s~~~~~~~-~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa 153 (153)
++.++.....| ..........+.|+++++||+|+.......... ....... ...+++++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 142 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE-LGVPYFETSA 142 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh-cCCcEEEEec
Confidence 99998888776 233334445679999999999987544333332 3344444 7889999986
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.4e-22 Score=145.30 Aligned_cols=143 Identities=19% Similarity=0.167 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc----ccc---cccccCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TIT---SSYYRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~---~~~~~~~ 81 (153)
..|.++|.++||||||++++.+.+......+..+.....-.+.+. ....+.+||+||...-. .+. ...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 568999999999999999999754322222333333333333342 12468999999964211 122 2245678
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|+|+|++++++++....|...+..... .+.|+++|+||+|+.+...+..++.+.+.+. .+.+++++||
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~-~~~~i~~iSA 310 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAA-LGGPVFLISA 310 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHh-cCCCEEEEEc
Confidence 999999999988889999899998877644 3689999999999976555544555556555 5688999997
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.7e-23 Score=132.69 Aligned_cols=118 Identities=29% Similarity=0.562 Sum_probs=101.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
....+|+++|.-++||||++++|.-++.... .||.+ +.+..+.+.+ +.+.+||.+|++.++..|++|+.+.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence 3568999999999999999999997775544 66666 5555666665 88999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~ 128 (153)
||+|.+|++.+.+.+..+..+..+.. .+.|+++.+||.|+...
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 99999999999998887777766654 67999999999999754
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.89 E-value=8e-23 Score=137.12 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CcCCCCc------------ceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 73 (153)
..+|+++|.+++|||||+++|.+ +.+.... .++.+.++......+.+..+.+.+||+||++.+...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 36899999999999999999986 4443332 112233333333334445578999999999999999
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHH------hcCc
Q 031777 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLL------YTGI 146 (153)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~------~~~~ 146 (153)
+..+++.+|++++|+|+++.. +.....++..+. ..+.|+++++||+|+.+.+. ...+++.++... ..++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999998732 222333333332 23689999999999965332 223444444422 1367
Q ss_pred eeeecCC
Q 031777 147 FFFYPSP 153 (153)
Q Consensus 147 ~~~~~Sa 153 (153)
+++.+||
T Consensus 158 ~iv~~Sa 164 (194)
T cd01891 158 PVLYASA 164 (194)
T ss_pred CEEEeeh
Confidence 8899986
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.89 E-value=6.4e-23 Score=131.07 Aligned_cols=121 Identities=25% Similarity=0.243 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc-----cccccccccccCccEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----RFRTITSSYYRGAHGI 84 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~~~~ 84 (153)
||+++|++|+|||||++++.+..+. ..++.+. .+.. .+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999976542 2222221 1111 689999973 2333323 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.++.. ..|...+ ..|+++|+||+|+.+ +....++++++++.....+++++||
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEec
Confidence 99999999988754 2343322 249999999999865 3456777788887733448999997
No 141
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.89 E-value=1.1e-21 Score=129.18 Aligned_cols=117 Identities=28% Similarity=0.457 Sum_probs=91.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.+..+. ...++.+. ....+..++ ..+.+||+||+..+...+..+++.+++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 44699999999999999999999986543 23444442 333444555 67899999999888888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~ilv~~K~D~~~ 127 (153)
+|+|..+..++.....++..+.. ....+.|+++++||+|+.+
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 99999998888877766555533 2334689999999999864
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=3.6e-22 Score=129.46 Aligned_cols=131 Identities=17% Similarity=0.163 Sum_probs=93.3
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc------ccccc--cCccEE
Q 031777 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGI 84 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~ 84 (153)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+||+||+..+... +..++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444445555555555666665 57899999998766542 44455 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|..++.... .+...+.. .+.|+++|+||+|+.+...+..+ .+.++.. .+.+++++||
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~-~~~~~~~iSa 139 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSEL-LGVPVVPTSA 139 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHh-hCCCeEEEEc
Confidence 9999998764432 23333322 36899999999999765444433 4566666 6789999987
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=8.5e-22 Score=128.95 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
.|+++|.+|+|||||+++|....+.....++.+.+.....+... +....+.+||+||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877665544333333333333333 13468999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
|.++....+.. ..+..++ ..+.|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~~-~~~~~~~---~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAK---AANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHH-HHHHHHH---HcCCCEEEEEEceecccc
Confidence 99874322211 1122222 246899999999998643
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=2.1e-21 Score=140.23 Aligned_cols=139 Identities=19% Similarity=0.176 Sum_probs=97.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc---------cccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITSS 76 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~ 76 (153)
+..++|+++|.+|+|||||+|+|.+........+..+.+.....+.+++. ..+.+|||+|.. .+...+ .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 34589999999999999999999987644333333344455556666432 478999999972 222222 2
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+.++|++++|+|.+++.+++....|...+......+.|+++|+||+|+.+...+ .... . ...+++.+||
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~-~~~~~i~iSA 334 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-E-GYPEAVFVSA 334 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-h-CCCCEEEEEc
Confidence 4778999999999999988887777777776665456899999999998643221 1121 2 2345788887
No 145
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.87 E-value=5.2e-21 Score=119.60 Aligned_cols=146 Identities=23% Similarity=0.383 Sum_probs=113.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCC--CcceeeeeEEEEEEE-eeCCeEEEEEEEeCCCcccc-cccccccccCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE--SYISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERF-RTITSSYYRGA 81 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~g~~~~-~~~~~~~~~~~ 81 (153)
....+++|+|..++|||++++.+..++... +..+++. +++...+ +..+..=.++++||.|-... ....++|+.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 456899999999999999999988654332 2334443 2332222 23344457899999998766 67778899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++||+..+++||+.+...-..|..+. +..+||++++||+|+.++++++.+.++-|++. ..++.+|++|
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r-Ekvkl~eVta 157 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR-EKVKLWEVTA 157 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh-hheeEEEEEe
Confidence 99999999999999998765555554443 35699999999999999999999999999998 8888888865
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.1e-21 Score=129.27 Aligned_cols=138 Identities=22% Similarity=0.233 Sum_probs=92.1
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccc----cccc---cccccCccEE
Q 031777 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERF----RTIT---SSYYRGAHGI 84 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~----~~~~---~~~~~~~~~~ 84 (153)
++|++|+|||||+++|.+........+..+.+.....+.++ + ..+.+||+||.... +.+. ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999875421212222222333334444 4 57899999997321 2222 2346789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeec
Q 031777 85 IIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 85 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
++|+|..++ .+++....|...+..... .+.|+++|+||+|+...+............. .+..++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-EGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-CCCCEEEE
Confidence 999999987 577777777777765432 3689999999999976544433333344444 67778998
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 158 Sa 159 (176)
T cd01881 158 SA 159 (176)
T ss_pred eh
Confidence 86
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=3e-21 Score=143.12 Aligned_cols=133 Identities=25% Similarity=0.272 Sum_probs=96.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------cccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSY 77 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~ 77 (153)
..++|+++|++|+|||||+|+|.+... .....++.+.++....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 358999999999999999999998643 122234445555556667776 56789999998654432 2357
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++|++++|+|.+++.+++.. |+..+. ..+.|+++|+||+|+.+. +...+++. .+.+++++||
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~-~~~~~~~vSa 343 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSS-KVLNSSNLSA 343 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhh-cCCceEEEEE
Confidence 7899999999999998887654 555443 236899999999998643 12344555 6677888886
No 148
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=8.8e-22 Score=132.70 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=85.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc-----------cccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ-----------ERFRTITS 75 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-----------~~~~~~~~ 75 (153)
..++|+++|.+|+|||||++++.+..+.....++.+ .....+.+. .+.+||+||. +.++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 568999999999999999999998776554444433 333333332 5889999993 44444444
Q ss_pred cccc----CccEEEEEEECCChhhH----HH---HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhc
Q 031777 76 SYYR----GAHGIIIVYDVTDQESF----NN---VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYT 144 (153)
Q Consensus 76 ~~~~----~~~~~i~v~d~~~~~s~----~~---~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 144 (153)
.++. .++++++|+|.++...+ .. .......+......+.|+++|+||+|+.+.+ .+...++++. .
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~-~ 157 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVLDEIAER-L 157 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHHHHHHHH-h
Confidence 4443 45788888887643221 00 0000111122222468999999999986543 3445556555 3
Q ss_pred Cc---------eeeecCC
Q 031777 145 GI---------FFFYPSP 153 (153)
Q Consensus 145 ~~---------~~~~~Sa 153 (153)
++ .++++||
T Consensus 158 ~~~~~~~~~~~~~~~~SA 175 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISA 175 (201)
T ss_pred cCCccccccCCcEEEEec
Confidence 43 4789997
No 149
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=4e-21 Score=129.65 Aligned_cols=117 Identities=23% Similarity=0.410 Sum_probs=87.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc-cEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA-HGIIIVY 88 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~~~i~v~ 88 (153)
+|+++|++++|||+|+++|....+.....++ ............+....+.+||+||+..+...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988766554433 2222222222223457899999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHH-HH--hcCCCCcEEEEEecCCCCC
Q 031777 89 DVTDQ-ESFNNVKQWLNEI-DR--YASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 89 d~~~~-~s~~~~~~~~~~~-~~--~~~~~~~~ilv~~K~D~~~ 127 (153)
|+.+. .++.....|+..+ .. ...++.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6777666554443 22 2235799999999999864
No 150
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=122.08 Aligned_cols=144 Identities=28% Similarity=0.554 Sum_probs=124.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||.++|++..|||||+-.+.+..+.+++..+.+..+..+++...+..+.+.+||.+|++++..+.+...+.+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 48999999999999999999998888888888889999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-----cccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++.+.++..+..|+.+-+..... .--++||+|.|+.-. +.....+++++++. .+.+.|-||+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~Nkt-AiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~-mnAsL~F~St 168 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKT-AIPILVGTKYDLFIDLPPELQETISRQARKYAKV-MNASLFFCST 168 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCc-cceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH-hCCcEEEeec
Confidence 9999999999999999998876554 444789999998421 22334467888888 8888888875
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.86 E-value=8.1e-21 Score=136.16 Aligned_cols=142 Identities=18% Similarity=0.151 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc----cccccc---ccCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TITSSY---YRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~---~~~~ 81 (153)
..|+++|.+++|||||+++|..........+..+.......+.+++ ...+.+||+||..... .+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999997543222122222222222333332 2578999999974221 222333 4468
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++++|+|+++. ..++.+..|...+..... .+.|+++|+||+|+.+... ..+..+.+++. .+..++++||
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~-~~~~vi~iSA 311 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKA-LGKPVFPISA 311 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHH-cCCcEEEEEc
Confidence 999999999976 677778788877766532 3689999999999965432 23444556655 5678999997
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=1.4e-20 Score=121.65 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------cccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYYR 79 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~ 79 (153)
++|+++|++|+|||||++++.+..... ...+..+.+.....+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999865421 2223333334444455554 57899999997655432 224567
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .... .+.+++++||
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~-~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLL-AGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------cccc-CCCceEEEEC
Confidence 8999999999998777665543322 346899999999999754332 2223 5677888886
No 153
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=9.2e-21 Score=125.64 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=89.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----------cccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~ 74 (153)
.+..++|+|+|.+|+|||||++++.+..+.....++.+.+.....+..++ .+.+||+||.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35678999999999999999999998653333333333222222333332 68999999953 222233
Q ss_pred ccccc---CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc--ccCHHHHHHHHHHh-cCcee
Q 031777 75 SSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYETAKVYLLLY-TGIFF 148 (153)
Q Consensus 75 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~--~~~~~~~~~~~~~~-~~~~~ 148 (153)
..+++ .++++++|+|.+++-+.... .++..+. ..+.|+++++||+|+.+.. +...+++++..... ..+.+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~---~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR---ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 34444 35799999999875554433 2223332 2368999999999986532 22344555555551 13579
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+++||
T Consensus 168 ~~~Sa 172 (179)
T TIGR03598 168 QLFSS 172 (179)
T ss_pred EEEEC
Confidence 99997
No 154
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=2.8e-21 Score=124.08 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc------cccccc--cC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--RG 80 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~ 80 (153)
++|+++|.+|+|||||+|+|++.+......|..+.+.....+.+.+ ..+.+.|+||...... +...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999775444445555566666666666 6799999999544432 223333 67
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.|++|+|+|.++.+. .-. ...+..+.+.|+++++||+|..+.+....+ ..++++. .+++.+.+||
T Consensus 79 ~D~ii~VvDa~~l~r---~l~---l~~ql~e~g~P~vvvlN~~D~a~~~g~~id-~~~Ls~~-Lg~pvi~~sa 143 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLY---LTLQLLELGIPVVVVLNKMDEAERKGIEID-AEKLSER-LGVPVIPVSA 143 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHH---HHHHHHHTTSSEEEEEETHHHHHHTTEEE--HHHHHHH-HTS-EEEEBT
T ss_pred CCEEEEECCCCCHHH---HHH---HHHHHHHcCCCEEEEEeCHHHHHHcCCEEC-HHHHHHH-hCCCEEEEEe
Confidence 899999999886322 112 223333446899999999998765444333 5677777 7999999987
No 155
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=6e-22 Score=122.95 Aligned_cols=116 Identities=31% Similarity=0.579 Sum_probs=96.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+.+.++|..+||||||++.+..+.+.+...|+.+ +....+ ....+.+.+||.||+..++.+|+.|++.++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~--tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEe--ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46889999999999999999988888777777776 444444 44458999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~ 127 (153)
+|..+++.+...+..+..+.... -.+.|++++|||.|+..
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 99999999888777666654433 25799999999999864
No 156
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1e-19 Score=119.28 Aligned_cols=140 Identities=23% Similarity=0.217 Sum_probs=88.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc-----------cc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------TS 75 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~ 75 (153)
.++|+++|.+|+|||||++++.+..... ...+..........+..++ ..+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999998765321 2122222223333444555 45789999997543210 12
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHH-Hh---cCceeeec
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLL-LY---TGIFFFYP 151 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~-~~---~~~~~~~~ 151 (153)
..+..+|++++|+|..++.+..... ++..+. ..+.|+++++||+|+.+.+....++..+... .. ...+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 2457889999999999877754432 222222 2358999999999997654233333233332 21 24679999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 156 Sa 157 (174)
T cd01895 156 SA 157 (174)
T ss_pred ec
Confidence 86
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=2.1e-20 Score=139.21 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=91.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------ccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 78 (153)
.++|+++|.+|+|||||+|+|.+... .....+..+.++....+.+++ ..+.+|||||...+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999999999998653 223334444455555666666 56899999998654332 23367
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.+|++++|+|.+++.+++....|.. ..+.|+++|+||+|+.+..... .. .+.+++++||
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~-~~~~~i~iSA 352 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EE-NGKPVIRISA 352 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hc-cCCceEEEEe
Confidence 88999999999999887765444432 3468999999999996533221 22 4566777775
No 158
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.84 E-value=6.5e-20 Score=139.78 Aligned_cols=139 Identities=18% Similarity=0.183 Sum_probs=97.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+..+|+++|..++|||||+++|.+..+.....++.+.+.....+.+++. ..+.+||||||+.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 5589999999999999999999987776655444444455455555442 278999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH-------hc-CceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL-------YT-GIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~Sa 153 (153)
|+|+++....+.. +.++.....+.|+++++||+|+.+. ..++....... +. ..+++++||
T Consensus 165 VVda~dgv~~qT~----e~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 165 VVAADDGVMPQTI----EAISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred EEECCCCCCHhHH----HHHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 9998863222211 2222223346899999999998542 23333333322 11 257899997
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=4.7e-20 Score=129.50 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=86.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCC-cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc--------cccccccC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRG 80 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 80 (153)
+|+++|.+|+|||||+|+|.+...... ..+..+... ...+...+ ..++.+|||||...... .....+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 589999999999999999998764321 111111111 12222222 24789999999754311 12345788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++|+|.++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+........++++||
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEec
Confidence 99999999999876654 334444433 3579999999999864322 2334445554423337899997
No 160
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=115.78 Aligned_cols=125 Identities=26% Similarity=0.504 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+.+|..++||||++..|.... +....|+.+ +.+..+.+.+ +++.+||.+|++..+..|++|+....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 5899999999999999999998655 234455555 6666666666 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHH
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVY 139 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~ 139 (153)
+|..+....++.+..+..+-+..+ .+.|+++.+||.|+... ...+|..++
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~ 142 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDK 142 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHH
Confidence 999998888887765555544333 56899999999999753 334444433
No 161
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=2.8e-20 Score=124.64 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----cC---CCCcceeeeeEEEEEEEeeC------------CeEEEEEEEeCCCccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD----SY---IESYISTIGVDFKIRTVEQD------------GKTIKLQIWDTAGQER 69 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~g~~~ 69 (153)
+||+++|+.++|||||+++|... .+ ..+..+..+.+.....+.+. +..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11 11111222222322222222 3357899999999976
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc--ccCHHHHHHHHH-H----
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYETAKVYLL-L---- 142 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~--~~~~~~~~~~~~-~---- 142 (153)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+.... +...++.++... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999998744433322221 1111 246999999999986422 222333333221 1
Q ss_pred -hcCceeeecCC
Q 031777 143 -YTGIFFFYPSP 153 (153)
Q Consensus 143 -~~~~~~~~~Sa 153 (153)
+.+++++++||
T Consensus 157 ~~~~~~vi~iSa 168 (192)
T cd01889 157 RFKNSPIIPVSA 168 (192)
T ss_pred CcCCCCEEEEec
Confidence 25678999997
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.84 E-value=4.3e-20 Score=122.90 Aligned_cols=138 Identities=18% Similarity=0.112 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcce----------------eeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYIS----------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 73 (153)
+|+|+|.+|+|||||++++.+........+ ..+.......+... ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999988665433211 11222222333333 368999999999888888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHH---------
Q 031777 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLLL--------- 142 (153)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~~--------- 142 (153)
+..+++.+|++++|+|..+..+... ..++..+.. .+.|+++++||+|+..+.. ...++.++..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8889999999999999987654432 233333332 4689999999999975222 223333333332
Q ss_pred ----hcCceeeecCC
Q 031777 143 ----YTGIFFFYPSP 153 (153)
Q Consensus 143 ----~~~~~~~~~Sa 153 (153)
....+++++||
T Consensus 155 ~~~~~~~~~v~~~Sa 169 (189)
T cd00881 155 GTRNGLLVPIVPGSA 169 (189)
T ss_pred hcccCCcceEEEEec
Confidence 13577888886
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.7e-20 Score=139.67 Aligned_cols=141 Identities=21% Similarity=0.170 Sum_probs=93.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----------cccccc-
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT- 74 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~- 74 (153)
..++|+++|.+++|||||+++|.+... .....++.+.+.....+.+++. .+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998654 2233444444444455666664 56799999952 222222
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHHhcCceeeecC
Q 031777 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~S 152 (153)
..+++.+|++|+|+|+++..++.... ++..+. ..+.|+++|+||+|+.+... ...++..+.......++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23568899999999999988877653 333332 34689999999999965321 1112222221222457889999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 364 A 364 (472)
T PRK03003 364 A 364 (472)
T ss_pred C
Confidence 7
No 164
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=8.4e-20 Score=139.67 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=97.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc-------CCCCcce------eeeeEEEEE--EEee---CCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS-------YIESYIS------TIGVDFKIR--TVEQ---DGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~--~~~~---~~~~~~~~~~d~~g~~ 68 (153)
+..|++|+|..++|||||+++|+... +...... ..+.++... .+.+ ++..+.+.+|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46799999999999999999998642 1111111 112233322 2223 4667899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc--
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-- 146 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-- 146 (153)
+|...+..++..+|++|+|+|+++..+.+....|...+. .+.|+++|+||+|+.+.. ..+...++.+. .++
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~-lg~~~ 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEV-IGLDA 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHH-hCCCc
Confidence 999989999999999999999998766666555544332 367999999999986422 12223344444 344
Q ss_pred -eeeecCC
Q 031777 147 -FFFYPSP 153 (153)
Q Consensus 147 -~~~~~Sa 153 (153)
.++++||
T Consensus 155 ~~vi~vSA 162 (595)
T TIGR01393 155 SEAILASA 162 (595)
T ss_pred ceEEEeec
Confidence 4788887
No 165
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=4.5e-20 Score=114.01 Aligned_cols=120 Identities=32% Similarity=0.519 Sum_probs=97.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
...+.++++++|..++|||||+..|.+.. +.+..|+.+ +....+.+++ .+.+.+||.+|+...+..|..|+.++|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 34678999999999999999999998644 445566666 5555555554 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~ 127 (153)
+|+|+|.+|+..|+++...+-.+..- .-...|+.+..||.|+.-
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 99999999999999887655555333 335699999999999854
No 166
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.83 E-value=9.3e-20 Score=139.26 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc---CcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD---DSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+.|+++|..++|||||+++|.+ ..++++..++.+.++....+..++ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4789999999999999999996 334445555566666666666666 78999999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc--CHHHHHHHHHHhc---CceeeecCC
Q 031777 86 IVYDVTD---QESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKVYLLLYT---GIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa 153 (153)
+|+|+++ +.+++.+ ..+.. .+.| +++++||+|+.+...+ ..++++++.+.+. +.+++++||
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA 148 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSA 148 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeC
Confidence 9999987 4444333 22222 2456 9999999999764432 2345556555421 678999997
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=2.7e-19 Score=129.08 Aligned_cols=138 Identities=18% Similarity=0.253 Sum_probs=88.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-cceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-ccccc-------cc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTIT-------SS 76 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~-------~~ 76 (153)
.+..+|+++|.+|+|||||+++|.+..+... ..+..+.+.....+..++ .++.+|||||... +.... ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 3457999999999999999999998765421 111111222333444555 5789999999843 22211 12
Q ss_pred cccCccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh-cCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY-TGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 153 (153)
.+..+|++|+|+|..+ ++.... .|+..++.. +.|.++|+||+|+.+. ..+++.+++... ....++++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 4678999999999764 444443 355555432 4577889999998643 244555555542 2367999997
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.8e-19 Score=135.21 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=81.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--------cccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~ 77 (153)
..++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+||+||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3478999999999999999999986532 23344444444444555655 4688999999762 22334557
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
++.+|++|||+|+++..++.. ..+...++. .+.|+++|+||+|+..
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER 160 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc
Confidence 889999999999998766543 233334432 3689999999999854
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=4e-19 Score=130.71 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc----ccccccc---ccCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTITSSY---YRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----~~~~~~~---~~~~ 81 (153)
..|+++|.++||||||+++|.+.+......|..+.......+.++. ...+.+||+||.... ..+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999997553222222222222222333331 257999999996421 1222333 4558
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|+|+|+++. ..++....|...+....+ .+.|+++|+||+|+.+ ..+..+++.+. .+.+++.+||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~-l~~~i~~iSA 309 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEK-LGPKVFPISA 309 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHH-hCCcEEEEeC
Confidence 999999999864 566777777777766543 3689999999999843 23445666666 4578999997
No 170
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=2.7e-19 Score=132.11 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=85.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc--ccccc------cccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--RTITS------SYYR 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~--~~~~~------~~~~ 79 (153)
.++|+++|++|+|||||+|+|.+........++.+.+.....+.+.+. ..+.+|||+|.... ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999986654333334444444445555542 26789999997321 12222 2357
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.+|++|+|+|.+++.+++.+..|...+......+.|+++|+||+|+.+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 899999999999998888876666666655555689999999999864
No 171
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=2.4e-19 Score=133.17 Aligned_cols=148 Identities=17% Similarity=0.113 Sum_probs=96.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcC--cCC-----------------------------CCcceeeeeEEEEEE
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYI-----------------------------ESYISTIGVDFKIRT 49 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~ 49 (153)
|..+++ .++|+++|..++|||||+.+|+.. ... .+.....+.+.....
T Consensus 1 ~~~~~~-~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~ 79 (426)
T TIGR00483 1 MAKEKE-HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK 79 (426)
T ss_pred CCCCCc-eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE
Confidence 444444 699999999999999999999852 111 111223344444444
Q ss_pred EeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 50 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.. ..+.+.+||+||++.|.......+..+|++++|+|+++.+++.. ...++. +..... ..|+++++||+|+.+
T Consensus 80 ~~~--~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 80 FET--DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVN 155 (426)
T ss_pred Ecc--CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccC
Confidence 444 44789999999999887766667889999999999998754311 111111 222222 357999999999964
Q ss_pred Ccc----cCHHHHHHHHHHhc----CceeeecCC
Q 031777 128 NKV----VSYETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 128 ~~~----~~~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
..+ ...++.+++++... .++++++||
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA 189 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISA 189 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeec
Confidence 222 22445566666522 367999997
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.82 E-value=4.6e-19 Score=138.31 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=97.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
.+...|+|+|..++|||||+++|....+.....+..+.+.....+.+++ ..+.+|||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4668999999999999999999998776655444444444444555555 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHH-------HHHHh-cCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKV-------YLLLY-TGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~Sa 153 (153)
||+|+++...-+ +...+......+.|+++++||+|+.+.+ .+.... +.+.+ ..++++++||
T Consensus 366 LVVdAddGv~~q----T~e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 366 LVVAADDGVMPQ----TIEAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEEECCCCCCHh----HHHHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 999998732211 1122333333468999999999996422 122111 12221 2368999997
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=2.1e-19 Score=116.22 Aligned_cols=130 Identities=19% Similarity=0.124 Sum_probs=83.7
Q ss_pred EEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 031777 12 LLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYRGAH 82 (153)
Q Consensus 12 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~~ 82 (153)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+||+||+..... .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999975421 11122223333344444555 6789999999877543 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
++++|+|..+..+.... .....++. .+.|+++|+||+|+.+.... ...... .+. .++++||
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~-~~~~~~~~~Sa 140 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYS-LGFGEPIPISA 140 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHh-cCCCCeEEEec
Confidence 99999999875444332 12222222 25899999999999764322 222223 344 6788886
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=6e-19 Score=114.77 Aligned_cols=141 Identities=17% Similarity=0.072 Sum_probs=87.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc--------ccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------ITSSYYR 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 79 (153)
..+|+++|++|+|||||++++.+................ ...........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999986543221111111111 1111222346789999999654332 2334578
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++++|+|..++.+. ....+...+.. .+.|+++|+||+|+....+...+....+....+..+++++||
T Consensus 82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 82 DVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred hCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 89999999999986221 12223333322 257999999999997433333444445554433567888875
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=1e-18 Score=129.97 Aligned_cols=141 Identities=25% Similarity=0.225 Sum_probs=91.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----------
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT---------- 74 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------- 74 (153)
...++++++|.+++|||||+++|++.... ....+..+.+.....+..++ ..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34589999999999999999999975421 22223333333334444555 478999999975543322
Q ss_pred -cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHH-H---hcCceee
Q 031777 75 -SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLL-L---YTGIFFF 149 (153)
Q Consensus 75 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~-~---~~~~~~~ 149 (153)
..+++.+|++|+|+|+++..+..... ++..+ ...+.|+++|+||+|+.+.. ...++..+... . ...++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 23578899999999999876665443 22222 23468999999999997321 11222222221 1 2457899
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
++||
T Consensus 323 ~~SA 326 (429)
T TIGR03594 323 FISA 326 (429)
T ss_pred EEeC
Confidence 9998
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=4.6e-19 Score=125.82 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc--------cccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--------TITSSYYR 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 79 (153)
.-.|+|+|.+|+|||||+|+|.+...........+.......+... ...++.+|||||..... ......+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4579999999999999999999876532211111111111122111 22689999999965432 22334567
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++++|+|+++..+ ......+..+. ..+.|+++|+||+|+........+..+++.+......++.+||
T Consensus 84 ~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 8999999999987322 11222233333 2357999999999997443334445556665545577889887
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=3.8e-19 Score=132.49 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc----cc---ccccccC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----TI---TSSYYRG 80 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~---~~~~~~~ 80 (153)
...|+++|.+++|||||+++|.+.+......|..+.....-.+.+.+ ..+.+||+||..... .+ .-..+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 36799999999999999999997543322223333333333444444 579999999953211 11 1224577
Q ss_pred ccEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcC
Q 031777 81 AHGIIIVYDVTDQ----ESFNNVKQWLNEIDRYA-----------SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTG 145 (153)
Q Consensus 81 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~ 145 (153)
++++|+|+|+++. ..++.+..+...+.... ..+.|+++|+||+|+.+.... .+........ .+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~-~g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEA-RG 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHH-cC
Confidence 8999999999753 34444444444443332 135899999999999654332 2222333334 47
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
++++++||
T Consensus 315 ~~Vf~ISA 322 (500)
T PRK12296 315 WPVFEVSA 322 (500)
T ss_pred CeEEEEEC
Confidence 88999997
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=3.8e-19 Score=137.74 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=96.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeE--EEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVD--FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.+.++|+|+|..++|||||+++|....+.....++.+.+ .....+..++....+.+|||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 356899999999999999999999876654433333322 222233334455889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH-------HHh-cCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYL-------LLY-TGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~Sa 153 (153)
+|+|+|+++....+... .+......+.|+++++||+|+.... .++..+.. ... ..++++++||
T Consensus 322 aILVVDA~dGv~~QT~E----~I~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIE----AINYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHH----HHHHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 99999998743222221 2222233468999999999986422 22222221 121 1368999997
No 179
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.81 E-value=3.8e-19 Score=136.07 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=92.1
Q ss_pred cCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 031777 15 GDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY--RGAHGIII 86 (153)
Q Consensus 15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~i~ 86 (153)
|++|+|||||+|++.+........++.+.+.....+.+++ .++.+||+||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998766444455555555555566665 46899999999877543 23333 36899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|.++.+.. +....+..+.+.|+++++||+|+.+.+.+. .+.+++++. .+++++++||
T Consensus 79 VvDat~ler~------l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~-lg~pvv~tSA 137 (591)
T TIGR00437 79 VVDASNLERN------LYLTLQLLELGIPMILALNLVDEAEKKGIR-IDEEKLEER-LGVPVVPTSA 137 (591)
T ss_pred EecCCcchhh------HHHHHHHHhcCCCEEEEEehhHHHHhCCCh-hhHHHHHHH-cCCCEEEEEC
Confidence 9999874321 222222233468999999999987655444 345777777 7899999997
No 180
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.81 E-value=3.4e-19 Score=115.85 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=80.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----SSYYRGAHGII 85 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~~~~~~~~~i 85 (153)
+|+++|.+++|||||+++|.+.... . ..+. .+.+... .+||+||.......+ ...++.+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998864311 1 1111 1222222 269999973222211 22368899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcC--ceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTG--IFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 153 (153)
+|+|.++..++.. .|+..+ ..+.|+++++||+|+.+ ...+.+.++++. .+ .+++++||
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~-~~~~~p~~~~Sa 129 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLE-TGFEEPIFELNS 129 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHH-cCCCCCEEEEEC
Confidence 9999998776532 233332 23578999999999854 345666777776 45 48999997
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=6.8e-19 Score=118.05 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=87.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----------cccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~ 74 (153)
.+..++|+++|.+|+|||||++++.+..+.....++.+.+........ ..++.+||+||.. .+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345689999999999999999999986644444444333332222222 2579999999942 223333
Q ss_pred cccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHHhcCceee
Q 031777 75 SSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLLLYTGIFFF 149 (153)
Q Consensus 75 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~~ 149 (153)
..+++. .+++++++|..++.+.... .....+. ..+.|+++++||+|+.+..+ ...++.++.... ....++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKF-GDDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-cCCceE
Confidence 444444 3678888988765443321 1112222 23578999999999865322 222334444444 367888
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
++||
T Consensus 173 ~~Sa 176 (196)
T PRK00454 173 LFSS 176 (196)
T ss_pred EEEc
Confidence 8886
No 182
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=1.8e-19 Score=133.29 Aligned_cols=149 Identities=24% Similarity=0.344 Sum_probs=110.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
.+....++|+++|+.|+||||||-.+...+++++..+-...-.-...+..+. +...+.|++...+-+......++.+|
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcC
Confidence 3455679999999999999999999999888777554332111112233333 55889999876666666677889999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHH-HHHHHHHhcCc-eeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVK-QWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYET-AKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~~Sa 153 (153)
++.++|+++++.+++.+. .|++.+++..+ .+.|+||||||+|+.+....+.+. ...+..+|..+ .+++|||
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA 157 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSA 157 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhh
Confidence 999999999999999876 59999999874 469999999999998755443333 44455554444 3778876
No 183
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.80 E-value=1.9e-18 Score=135.23 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----------ccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----------SSY 77 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------~~~ 77 (153)
.++|+++|++|+|||||+|++.+.+......+..+. ..++..+.....++.+||+||..++.... ..+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTv--e~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTV--ERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceE--eeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999986543333343333 33333334444789999999987765321 123
Q ss_pred c--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 78 Y--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 78 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+ ..+|++++|+|.++.+.- ..+..++. +.+.|+++++||+|+.+.+.+. .+.+++.+. .+++++++||
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~---e~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~-LG~pVvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLL---ELGIPCIVALNMLDIAEKQNIR-IDIDALSAR-LGCPVIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHH---HcCCCEEEEEEchhhhhccCcH-HHHHHHHHH-hCCCEEEEEe
Confidence 2 478999999999875432 22333332 3468999999999987655553 445777777 7899999986
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.2e-18 Score=129.94 Aligned_cols=131 Identities=22% Similarity=0.182 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--------cccccccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSYYR 79 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 79 (153)
.+|+++|.+|+|||||+++|.+.... ....+..+.+.....+.+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999976532 22233344444555566666 7899999999876 2222345678
Q ss_pred CccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
.+|++|+|+|..+..+... +..|+.. .+.|+++|+||+|+.+. .+...++. . .++ .++++||
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~~-~-lg~~~~~~iSa 144 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEFY-S-LGLGEPYPISA 144 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHHH-h-cCCCCCEEEEe
Confidence 8999999999987544332 2233332 25899999999997541 12223332 2 344 3788886
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=8.3e-19 Score=118.45 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC---CCCcceeeeeEEEEEEEeeC---------------------------C----
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTVEQD---------------------------G---- 54 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (153)
++|+++|..++|||||++.+.+... ..+.....+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999999975311 11111111112221111111 0
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VS 132 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~ 132 (153)
....+.+||+||++.+.......+..+|++++|+|+.++.........+..+... . ..|+++|+||+|+.+... ..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence 1167899999999988887777888899999999998732111111222222221 1 247999999999965322 11
Q ss_pred HHHHHHHHHHh--cCceeeecCC
Q 031777 133 YETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 133 ~~~~~~~~~~~--~~~~~~~~Sa 153 (153)
.++.+++...+ .+.+++++||
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA 181 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISA 181 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeC
Confidence 23344444321 3567899987
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=2e-18 Score=128.21 Aligned_cols=144 Identities=18% Similarity=0.145 Sum_probs=92.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC-------------------------------CCCcceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (153)
...++|+++|..++|||||+++|+.... .++..+..+.+.....+..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-- 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-- 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--
Confidence 3569999999999999999999984211 1112233343444444433
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc---
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--- 130 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--- 130 (153)
..+.+.+||+||+..+.......+..+|++++|+|++++..+.. ....+..+... . ..|+++++||+|+.+..+
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHH
Confidence 44789999999998887666666789999999999987312211 12222222222 2 247999999999965221
Q ss_pred -cCHHHHHHHHHHhc----CceeeecCC
Q 031777 131 -VSYETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 131 -~~~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
...++.+++.+... .++++.+||
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA 187 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSA 187 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeec
Confidence 22345555555422 257899997
No 187
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.79 E-value=1.8e-18 Score=132.53 Aligned_cols=141 Identities=21% Similarity=0.204 Sum_probs=94.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc--CCC-------------CcceeeeeEEEEEEEee---CCeEEEEEEEeCCCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIE-------------SYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~g~ 67 (153)
++..+++|+|..++|||||+++|+... ... +.....+.......+.+ ++..+.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456899999999999999999998632 111 01111111111222222 556789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI- 146 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~- 146 (153)
.+|...+..++..+|++|+|+|+++....+....|.... ..+.|+++|+||+|+.+.+. .+...++.+. .++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHH-hCCC
Confidence 999988999999999999999999865555444444332 23689999999999864321 1222333333 333
Q ss_pred --eeeecCC
Q 031777 147 --FFFYPSP 153 (153)
Q Consensus 147 --~~~~~Sa 153 (153)
.++.+||
T Consensus 158 ~~~vi~iSA 166 (600)
T PRK05433 158 ASDAVLVSA 166 (600)
T ss_pred cceEEEEec
Confidence 3788887
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.7e-18 Score=125.59 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc----c---ccccccCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----I---TSSYYRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~---~~~~~~~~ 81 (153)
..|+++|.+|||||||+|+|.+.+......|..+.....-.+.... ...+.++|+||...-.. + .-..+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4799999999999999999997553222223222222222333332 23689999999643211 1 11246788
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhc-CceeeecCC
Q 031777 82 HGIIIVYDVT---DQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYT-GIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 153 (153)
+++++|+|++ +...++....|+..+..... .+.|+++|+||+|+.+...+ .+..+++.+.+. ...++.+||
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEEC
Confidence 9999999988 45566777777777766532 35799999999998654333 334445544422 136788887
No 189
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9.7e-19 Score=113.04 Aligned_cols=143 Identities=29% Similarity=0.559 Sum_probs=119.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
-..+++++|..|.||||++++.+-+++...+.++.+.+.....+.-+-..+.+..||+.|++.+......++-.....|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999999999999987776665545456899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.||+..+-++.++..|...+...++ ++||++.|||.|..+. ++ ......+-+. .++.|++.||
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~~-k~k~v~~~rk-knl~y~~iSa 151 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-KV-KAKPVSFHRK-KNLQYYEISA 151 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-cc-ccccceeeec-ccceeEEeec
Confidence 9999999999999999998888777 4999999999997543 32 2222334444 6888888886
No 190
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.79 E-value=1.8e-17 Score=116.49 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=89.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC----------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-----
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR----- 71 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----- 71 (153)
..++|+++|.+|+|||||+|+|.+..+... ..++.........+..++..+++.+|||||..+..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998765433 23333444444555667778899999999932211
Q ss_pred ---------------------cccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 72 ---------------------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 72 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
..+...+. .+|+++++++.+... +... -++.++.... ..|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~--D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPL--DIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHH--HHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 11112333 467888888866421 1111 1333333333 5899999999999552
Q ss_pred --cccCHHHHHHHHHHhcCceeeec
Q 031777 129 --KVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
.....+..++.++. .++.+|..
T Consensus 159 ~e~~~~k~~i~~~l~~-~~i~~~~~ 182 (276)
T cd01850 159 EELKEFKQRIMEDIEE-HNIKIYKF 182 (276)
T ss_pred HHHHHHHHHHHHHHHH-cCCceECC
Confidence 23345556666766 67776653
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=2.3e-18 Score=111.05 Aligned_cols=135 Identities=21% Similarity=0.149 Sum_probs=86.0
Q ss_pred EEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc-------cccccCccEE
Q 031777 13 LIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-------SSYYRGAHGI 84 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~~~~~~~~~ 84 (153)
++|++|+|||||++++.+.... ....+............... ...+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999975443 22222222222222222221 3589999999977665433 3367889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH---HHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE---TAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa 153 (153)
++++|..+........ + +......+.|+++|+||+|+......... ...... ...+.+++++||
T Consensus 80 l~v~~~~~~~~~~~~~-~---~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sa 146 (163)
T cd00880 80 LFVVDADLRADEEEEK-L---LELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILL-LLLGLPVIAVSA 146 (163)
T ss_pred EEEEeCCCCCCHHHHH-H---HHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcc-cccCCceEEEee
Confidence 9999999877765544 2 22222346899999999998764332222 112222 336788888886
No 192
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=3.6e-18 Score=115.75 Aligned_cols=139 Identities=20% Similarity=0.121 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCC-------------------------------cceeeeeEEEEEEEeeCCeEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIES-------------------------------YISTIGVDFKIRTVEQDGKTIK 58 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (153)
+|+|+|.+++|||||+++|+....... ..+..+.+.....+.+++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 589999999999999999975321111 011222233333333443 67
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc----cCHH
Q 031777 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV----VSYE 134 (153)
Q Consensus 59 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~----~~~~ 134 (153)
+.+|||||+..+.......++.+|++|+|+|.++...- ........+... . ..++++|.||+|+.+... ...+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 88999999988766566678899999999999875321 111222222221 2 245788999999864322 1123
Q ss_pred HHHHHHHHhc--CceeeecCC
Q 031777 135 TAKVYLLLYT--GIFFFYPSP 153 (153)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~Sa 153 (153)
+.+++.+.+. ..+++.+||
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA 176 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISA 176 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeC
Confidence 4444554422 245899987
No 193
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=107.50 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=101.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCC--------CC----cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI--------ES----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 72 (153)
.....||+|.|+.++|||||++++...... .+ +..+...++.... +++ ...+.++++|||++|+-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHHHH
Confidence 345689999999999999999999875421 11 1122222333222 222 25899999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh-cCceeeec
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY-TGIFFFYP 151 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 151 (153)
+|..+.+++.++|+++|.+.+..+ .....+..+....+ .|+++..||.|+.. ..+.+..+++.+.. ...+.++.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999999888 55555555554333 89999999999976 34556666665552 26666666
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
+|
T Consensus 159 ~a 160 (187)
T COG2229 159 DA 160 (187)
T ss_pred ec
Confidence 54
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.78 E-value=1.1e-18 Score=132.91 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC----------------CeEEEEEEEeCCCccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~ 71 (153)
..-|+++|..++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999876644322211111111111111 001238899999999999
Q ss_pred ccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.++..++..+|++++|+|+++ +.+++.+. .++ ..+.|+++++||+|+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccc
Confidence 999999999999999999987 45544332 222 23689999999999864
No 195
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=4.4e-18 Score=115.93 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC--C--------------CcceeeeeEEEEEEEeeC--------CeEEEEEEEeC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI--E--------------SYISTIGVDFKIRTVEQD--------GKTIKLQIWDT 64 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~ 64 (153)
.+|+|+|..++|||||+.+|+..... . +.....+.........+. +..+.+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999753211 0 001111111112222232 34689999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCcccCHHH
Q 031777 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT-ANKVVSYET 135 (153)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~-~~~~~~~~~ 135 (153)
||+..|.......++.+|++++|+|+.+..+.+... .++.....+.|+++++||+|+. .+..++.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~----~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~ 148 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET----VLRQALKERVKPVLVINKIDRLILELKLSPEE 148 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH----HHHHHHHcCCCEEEEEECCCcchhhhcCCHHH
Confidence 999999998999999999999999999865544322 2222223457999999999985 233444443
No 196
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.78 E-value=2.8e-18 Score=114.55 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=90.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC------------------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES------------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
+.++|+++|+.++|||||+++|........ .....+.......+..+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 468999999999999999999985332111 11112222333333312333789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHH-HHHHHh--c
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAK-VYLLLY--T 144 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~-~~~~~~--~ 144 (153)
.|.......+..+|++|+|+|+.+.-... ... .+......+.|++++.||+|+.+.+. -..++.. ++.+.. .
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~---~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEE---HLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHH---HHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccc---ccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99888888899999999999998653322 222 22222234678999999999973211 1111222 333331 1
Q ss_pred ---CceeeecCC
Q 031777 145 ---GIFFFYPSP 153 (153)
Q Consensus 145 ---~~~~~~~Sa 153 (153)
..+++.+||
T Consensus 158 ~~~~~~vi~~Sa 169 (188)
T PF00009_consen 158 GEEIVPVIPISA 169 (188)
T ss_dssp TTSTEEEEEEBT
T ss_pred ccccceEEEEec
Confidence 357888887
No 197
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=1.2e-17 Score=124.55 Aligned_cols=141 Identities=24% Similarity=0.233 Sum_probs=89.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc-----------c
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-----------T 74 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~ 74 (153)
..++|+++|.+|+|||||++++++... .....++.+.+.....+..++ ..+.+|||||....... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 469999999999999999999997542 222233333333334444555 56789999996432221 1
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CHHHHHHHHHHhcCceeeecC
Q 031777 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~S 152 (153)
..+++.+|++|+|+|+.+..+...... ...+ ...+.|+++++||+|+.+.... ..++.+........++++++|
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~---~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRI-AGLA---LEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH---HHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 235778999999999998766554432 2222 2235899999999998743211 111111111122567899999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 326 A 326 (435)
T PRK00093 326 A 326 (435)
T ss_pred C
Confidence 7
No 198
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=6.4e-18 Score=125.77 Aligned_cols=132 Identities=23% Similarity=0.222 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc--------cccccccccccC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYYRG 80 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~ 80 (153)
+|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||.. .+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999986532 12233334344445555666 569999999963 233445557788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
+|++++|+|..+..+... ..+...++. .+.|+++|+||+|+.+.... ..++. . .++ .++++||
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~~~-~-lg~~~~~~vSa 142 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAEFY-S-LGFGEPIPISA 142 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHHHH-h-cCCCCeEEEeC
Confidence 999999999987544332 122223332 35799999999998653321 22222 3 344 6888887
No 199
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=3.8e-18 Score=117.98 Aligned_cols=142 Identities=19% Similarity=0.116 Sum_probs=90.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc--------cccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSYY 78 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~--------~~~~~~~~ 78 (153)
+.--|+|+|.||+|||||+|++.+.+...-.....++.-....+... .+.++.+.||||...- .......+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34578999999999999999999976543322222222222333222 2468999999995332 22334456
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+|+++||+|..+...- .....++.++. .+.|++++.||+|...+.....+..+.+.........+.+||
T Consensus 84 ~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 84 KDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred ccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 889999999998863322 22233444444 357999999999987765432344444444445556777776
No 200
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.6e-19 Score=112.32 Aligned_cols=118 Identities=29% Similarity=0.473 Sum_probs=92.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc---CcC----CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD---DSY----IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 79 (153)
..+.++|+|+.++|||||+.++.. ..+ +....++.+....... .++ ..+.+||.+|++..+++|..|+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 357899999999999999998753 111 2233445554444333 343 57899999999999999999999
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~ 128 (153)
.+|++|+++|.++++.|+.....++.+.... -.++|+++.+||.|+.+.
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 9999999999999999998887666665443 357999999999998754
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.76 E-value=2.5e-17 Score=126.06 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=94.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc--CcCCCCc------------ceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD--DSYIESY------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 72 (153)
...+|+|+|..++|||||+++|+. +.+.... ....+.++......++...+++.+||+||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 468999999999999999999986 3332211 11233344444444555568999999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHH------hcC
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLL------YTG 145 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~------~~~ 145 (153)
.+..+++.+|++|+|+|+.+....+ ...++.... ..+.|.+++.||+|+...+. -..++...+... ...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~---~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAF---AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHH---HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998743222 222222222 23678999999999864321 112233333211 134
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
++++.+||
T Consensus 160 ~PVi~~SA 167 (607)
T PRK10218 160 FPIVYASA 167 (607)
T ss_pred CCEEEeEh
Confidence 66788776
No 202
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=1.3e-17 Score=113.72 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeee--EEEEEEEeeCCeEEEEEEEeCCCcccccc-----cccccccCcc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV--DFKIRTVEQDGKTIKLQIWDTAGQERFRT-----ITSSYYRGAH 82 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----~~~~~~~~~~ 82 (153)
||+++|+++|||||+.+.+.++-.+.+ +...+. +.....+... ..+.+.+||+||+..+-. .....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 799999999999999888876443322 332222 2333333222 336899999999976544 3466789999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEecCCCCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ilv~~K~D~~~ 127 (153)
++|+|+|+.+.+-.+.+......+... ..++..+.++.+|+|+..
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 999999999655445555544444332 235799999999999964
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.75 E-value=1.9e-17 Score=126.62 Aligned_cols=139 Identities=15% Similarity=0.175 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--cCCCC--------------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD--SYIES--------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 72 (153)
.+|+|+|..++|||||+++|+.. .+... .....+.......+.++ .+++.+|||||+.+|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--~~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--GTKINIVDTPGHADFGG 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--CEEEEEEECCCHHHHHH
Confidence 58999999999999999999862 22211 11112222222334444 47899999999999998
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHH------HhcC
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLL------LYTG 145 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~------~~~~ 145 (153)
....+++.+|++++|+|+.+. ...+...|+..+.. .+.|+++++||+|+.+.+. ...++...+.. +...
T Consensus 80 ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 889999999999999999863 23334445444433 3678999999999865331 11233333332 1135
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
++++.+||
T Consensus 156 ~pvl~~SA 163 (594)
T TIGR01394 156 FPIVYASG 163 (594)
T ss_pred CcEEechh
Confidence 67888886
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.6e-17 Score=129.94 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=79.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc----------ccccc-
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTIT- 74 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~- 74 (153)
..++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++. .+.+|||||... +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999986532 222333334444445556664 467999999532 11111
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
...++.+|++++|+|.++..+.+....+ ..+. ..+.|+++|+||+|+.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~---~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAV---DAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHH---HcCCCEEEEEEchhcCC
Confidence 2346789999999999988777665432 2332 24689999999999965
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.75 E-value=9e-17 Score=110.56 Aligned_cols=83 Identities=25% Similarity=0.268 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRGAH 82 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~ 82 (153)
+++++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998653222222222233333444555 679999999975332 12234688999
Q ss_pred EEEEEEECCChh
Q 031777 83 GIIIVYDVTDQE 94 (153)
Q Consensus 83 ~~i~v~d~~~~~ 94 (153)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998754
No 206
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.2e-18 Score=107.18 Aligned_cols=123 Identities=26% Similarity=0.387 Sum_probs=100.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.=|++++|.-|+|||||++.|.+.+...+ .||.. .++.+..+.+ .++..+|.+||...+..|..|+..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccccc-CCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 45899999999999999999998776544 45543 3445555666 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHH
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK 137 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~ 137 (153)
+|+.|.+.|.+.+..++.+..... .+.|+++.+||+|... ..++++.+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~ 143 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELR 143 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHH
Confidence 999999999999888887766553 5699999999999864 33555544
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=9.1e-17 Score=125.79 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=77.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--------cccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSSY 77 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~ 77 (153)
...+|+|+|.+++|||||+|+|.+.... .+..++.+.+.......+++ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3478999999999999999999976531 12233333333333444455 5788999999653 22233456
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+..+|++|||+|..+.-+.. -..|...++. .+.|+++|+||+|+.+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECccccc
Confidence 78999999999997632211 1234444443 4689999999999854
No 208
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2e-18 Score=107.03 Aligned_cols=141 Identities=25% Similarity=0.352 Sum_probs=102.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
...+++++|.-|+||||++.++.-++.... .|+.+ +.+..+.+ +++++++||.+|+-..+..|+-|+.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 568999999999999999999987665433 44544 44444444 45899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCCCCc---ccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANK---VVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~ilv~~K~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|.+|++........+ ..+..-.-....+++++||.|..... ++.......-.+. .-+.+|++||
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~-r~~~Iv~tSA 161 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD-RIWQIVKTSA 161 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-heeEEEeecc
Confidence 99999988776655433 33333222458899999999986432 2222222222333 4578999987
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=9.3e-17 Score=107.64 Aligned_cols=140 Identities=17% Similarity=0.124 Sum_probs=88.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC----------------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
.++|+++|..++|||||+++|++... ..+..+..+.+.. ...+.....++.+.||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence 48999999999999999999985310 1111222222222 23333444688999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc---CHHHHHHHHHHh----
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKVYLLLY---- 143 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~---~~~~~~~~~~~~---- 143 (153)
......+..+|++++|+|....-. ......+..+.. .+.| ++++.||+|+....+. ..++.++.....
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777778889999999999876322 122222233322 2455 7899999998643221 223444444441
Q ss_pred cCceeeecCC
Q 031777 144 TGIFFFYPSP 153 (153)
Q Consensus 144 ~~~~~~~~Sa 153 (153)
.+.+++.+||
T Consensus 156 ~~v~iipiSa 165 (195)
T cd01884 156 DNTPIVRGSA 165 (195)
T ss_pred cCCeEEEeeC
Confidence 2367888887
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=1e-16 Score=110.43 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC------------------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
+|+++|..|+|||||+++|+...... +.....+.......+.++ ..++.+||+||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--DTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--CEEEEEEeCCCccchH
Confidence 58999999999999999998632110 001111112223333344 4789999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
..+..+++.+|++++|+|..+.... ....++..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 8888899999999999999875432 33344444433 3689999999999864
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=6.5e-17 Score=109.99 Aligned_cols=113 Identities=22% Similarity=0.273 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCc-----------------ceeeeeEEE--EEEEee---CCeEEEEEEEeCCCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESY-----------------ISTIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQ 67 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~~~d~~g~ 67 (153)
+|+|+|..++|||||+++|......... ....+.++. ...+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864332210 000111111 112211 355689999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+......++..+|++++|+|..+..+... ..++.... ..+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECcccC
Confidence 9998888888999999999999987665432 23333332 2348999999999985
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.73 E-value=3.3e-17 Score=111.87 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC-------------------------------CCcceeeeeEEEEEEEeeCCeEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYI-------------------------------ESYISTIGVDFKIRTVEQDGKTIK 58 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (153)
+|+++|..++|||||+.+|+..... .+.....+.+.....+.+.+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 5899999999999999998642110 01111222233333444444 78
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--cc
Q 031777 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KV 130 (153)
Q Consensus 59 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~--~~ 130 (153)
+.+||+||+..+.......+..+|++|+|+|+++... | .+....+..... .. ..|+++++||+|+... .+
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG-VKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC-CCeEEEEEEccccccccccH
Confidence 9999999998877766777788999999999987421 1 111111122221 12 2689999999999632 11
Q ss_pred cC----HHHHHHHHHHhc----CceeeecCC
Q 031777 131 VS----YETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 131 ~~----~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
-. .++++...+... .++++.+||
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA 187 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISG 187 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence 11 122222333311 367999997
No 213
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=7e-17 Score=113.16 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC------------------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
+|+++|.+++|||||+++|+.... +.+.....+.+.....+.+.+ .++.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974211 111122233333344455554 788999999999888
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
..+...++.+|++|+|+|..+...-. ....+..+ ...+.|++++.||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~---~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA---DRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH---HHcCCCEEEEEECCCCCC
Confidence 88888999999999999987643211 12222222 234579999999999864
No 214
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.4e-16 Score=111.50 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce--------------------eeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--------------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
..+|+|+|..|+|||||+++|+.......... ..+..+......+....+++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36899999999999999999985321101000 0011222222233334488999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.+|.......++.+|++|+|+|.++... .....++.... ..+.|+++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~---~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR---LRGIPIITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH---hcCCCEEEEEECCccCC
Confidence 9888777778899999999999986432 12223333322 24689999999999854
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=3.6e-17 Score=125.05 Aligned_cols=113 Identities=20% Similarity=0.222 Sum_probs=77.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce----eeeeEEEEEEEe--eCCeE-----E-----EEEEEeCCCcccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS----TIGVDFKIRTVE--QDGKT-----I-----KLQIWDTAGQERF 70 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~~~d~~g~~~~ 70 (153)
+...|+++|..++|||||+++|.+......... +.+..+...... ..+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456799999999999999999987654333222 222111111100 00111 1 2689999999999
Q ss_pred cccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 71 RTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..++...+..+|++++|+|+++ +.+++.+. .++ ..+.|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~---~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK---RRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH---HcCCCEEEEEECcCCc
Confidence 9988888899999999999987 55554442 222 2368999999999985
No 216
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1.1e-16 Score=117.94 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=91.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCc----------------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS----------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
.+..++|+++|..++|||||+++|++.. ...+.....+.+. ....++....++.+||+||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 4557999999999999999999997320 0111222333333 334444455788999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCcccC---HHHHHHHHHHhc
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVS---YETAKVYLLLYT 144 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ilv~~K~D~~~~~~~~---~~~~~~~~~~~~ 144 (153)
.|.......+..+|++++|+|+.+.-..+ ....+..+.. .+.|. ++++||+|+.+..+.. .++.+++.+.+.
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 88766666677889999999998632211 1222222322 24564 5789999987533221 235666666522
Q ss_pred ----CceeeecCC
Q 031777 145 ----GIFFFYPSP 153 (153)
Q Consensus 145 ----~~~~~~~Sa 153 (153)
.++++.+||
T Consensus 163 ~~~~~~~ii~vSa 175 (394)
T TIGR00485 163 FPGDDTPIIRGSA 175 (394)
T ss_pred CCccCccEEECcc
Confidence 168898886
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=8.3e-17 Score=104.90 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc----------cccccccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSSYYR 79 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~ 79 (153)
.|+++|.+|+|||||++.+.+........++.+.+.....+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 378999999999999999996554444444433333333333333 789999999543 2222333333
Q ss_pred ---CccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHH-HhcCceeeec
Q 031777 80 ---GAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLL-LYTGIFFFYP 151 (153)
Q Consensus 80 ---~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~-~~~~~~~~~~ 151 (153)
..+++++++|..+..+.. .+..|+.. .+.|+++++||+|+....+ ......+...+ .....+++.+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 357888999987653222 22233322 2479999999999854322 22222333333 2255678888
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 152 Sa 153 (170)
T cd01876 152 SS 153 (170)
T ss_pred ec
Confidence 76
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=2e-16 Score=110.62 Aligned_cols=125 Identities=19% Similarity=0.214 Sum_probs=89.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--cccccc------ccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITS------SYY 78 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--~~~~~~------~~~ 78 (153)
....|+|.|.||+|||||++.+...+.....-|..+-.+..-++...+ ..+++.||||.-+ +..+.. .-+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 568899999999999999999998776656566666566666665655 6899999999422 111111 111
Q ss_pred c-CccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q 031777 79 R-GAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET 135 (153)
Q Consensus 79 ~-~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~ 135 (153)
+ -.++++|++|.+.. .+.+.....+..++.... .|+++|.||+|+.+.......+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~ 302 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIE 302 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHH
Confidence 2 24799999999853 455666677888877666 7999999999987654443333
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.71 E-value=9.3e-17 Score=118.64 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcC---cCCCCcceeeeeEEEEEEEee------------------C--C----e
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQ------------------D--G----K 55 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~------------------~--~----~ 55 (153)
......++|+++|..++|||||+.+|.+. ....+.....+.........+ + + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 44556799999999999999999999652 111121122222211100000 0 0 1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CH
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SY 133 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~--~~ 133 (153)
...+.+||+||+..+..........+|++++|+|+.++....+....+..+... . ..|+++|+||+|+.+.... ..
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G-IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C-CCcEEEEEEeeccccchhHHHHH
Confidence 257899999999888766666667789999999998642111111122222221 1 2478999999999653221 12
Q ss_pred HHHHHHHHHh--cCceeeecCC
Q 031777 134 ETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 134 ~~~~~~~~~~--~~~~~~~~Sa 153 (153)
++.+++.+.. .+.+++++||
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA 183 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSA 183 (411)
T ss_pred HHHHHHhccccCCCCeEEEEEC
Confidence 3444444321 2578899997
No 220
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=3.3e-16 Score=96.80 Aligned_cols=106 Identities=25% Similarity=0.237 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc---------cccccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSSYYR 79 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~ 79 (153)
+|+|+|.+|+|||||+|+|.+... .....+..+.......+.+++ ..+.++|+||..... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999997532 111122222223334455666 456799999954221 11223347
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K 122 (153)
.+|++++|+|.+++.. +.....+..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8899999999777322 23333444442 46899999998
No 221
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.71 E-value=9.6e-17 Score=118.52 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=88.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC---CCCcceeeeeEEEEEEE--------------ee----CC------eEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY---IESYISTIGVDFKIRTV--------------EQ----DG------KTIKL 59 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~--------------~~----~~------~~~~~ 59 (153)
..++|+++|..++|||||+++|.+... .++.....+.......+ .. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999975321 11111111111110000 00 11 13678
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHH
Q 031777 60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAK 137 (153)
Q Consensus 60 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~ 137 (153)
.+||+||++.|...+...+..+|++++|+|+++.....+....+..+... . ..|+++++||+|+.+... ...++..
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 99999999999888888888899999999998642111222222333222 1 247999999999965322 1233444
Q ss_pred HHHHHh--cCceeeecCC
Q 031777 138 VYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 138 ~~~~~~--~~~~~~~~Sa 153 (153)
++.... .+++++++||
T Consensus 161 ~~l~~~~~~~~~ii~vSA 178 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSA 178 (406)
T ss_pred hhhhhcccCCCeEEEEEC
Confidence 444331 2578999987
No 222
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=2.5e-16 Score=110.60 Aligned_cols=113 Identities=21% Similarity=0.322 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcc------------------eeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYI------------------STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
+|+++|.+|+|||||+++|+......... ...+.......+.+++ ..+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 58999999999999999997532111100 0111122223344444 688999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
......+..+|++++|+|.++.........| ..+. ..+.|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCC
Confidence 7788889999999999999876544322222 2222 336899999999998653
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=4.3e-16 Score=114.76 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcC-------cC---------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD-------SY---------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
+....++|+++|..++|||||+++|++. ++ ..+.....+.+.. ...+.....++.++|+||+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEEcCCCcEEEEEECCCH
Confidence 3455799999999999999999999852 00 1111222333332 3333334467899999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCcc---cCHHHHHHHHHHh
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKV---VSYETAKVYLLLY 143 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-lv~~K~D~~~~~~---~~~~~~~~~~~~~ 143 (153)
..|.......+..+|++++|+|+.+...- +....+..+. ..+.|.+ ++.||+|+.+..+ ...++++++.+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 88876666778889999999999863221 2222222222 2346755 6899999964221 1223455555552
Q ss_pred c----CceeeecCC
Q 031777 144 T----GIFFFYPSP 153 (153)
Q Consensus 144 ~----~~~~~~~Sa 153 (153)
. ..+++.+||
T Consensus 162 ~~~~~~~~ii~~Sa 175 (396)
T PRK12735 162 DFPGDDTPIIRGSA 175 (396)
T ss_pred CCCcCceeEEecch
Confidence 2 367888886
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=3.9e-16 Score=120.04 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=89.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---cCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
-|.++|..++|||||+++|.+. .+.++.....+.+.....+...+ ...+.+||+||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 33444434444444433333322 2458999999999987777777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc--CHHHHHHHHHHh--cCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV--SYETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~--~~~~~~~~~~~~--~~~~~~~~Sa 153 (153)
|+|+++.-. .+....+..+... +.| +++|+||+|+.++... ..++.+++.... ...+++++||
T Consensus 81 VVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA 148 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA 148 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 999886321 1112222222222 234 6899999999653222 133444554441 2368999997
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.69 E-value=6.9e-16 Score=113.60 Aligned_cols=142 Identities=18% Similarity=0.113 Sum_probs=90.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC----------------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
...++|+++|..++|||||+++|++... ..+.....+.+. ....+......+.++|+||+..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 4469999999999999999999985211 111122233233 3333444446789999999998
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCcccC---HHHHHHHHHHhc-
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETAKVYLLLYT- 144 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~~---~~~~~~~~~~~~- 144 (153)
|.......+..+|++++|+|+.+...- +....+..+.. .+.| ++++.||+|+.+..+.. .++..++.....
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 876666677889999999998863221 12222223322 2466 67899999986432221 234555554422
Q ss_pred ---CceeeecCC
Q 031777 145 ---GIFFFYPSP 153 (153)
Q Consensus 145 ---~~~~~~~Sa 153 (153)
..+++.+||
T Consensus 164 ~~~~~~ii~vSa 175 (394)
T PRK12736 164 PGDDIPVIRGSA 175 (394)
T ss_pred CcCCccEEEeec
Confidence 257888887
No 226
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=3.1e-19 Score=115.05 Aligned_cols=147 Identities=37% Similarity=0.652 Sum_probs=119.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe-EEEEEEEeCCCcccccccccccccCccEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
..-.+++|+|..|+|||+++.+.....+..++..+.+.++......++.. .++++|||..|++++..+..-|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 45689999999999999999999988888888888888887666666654 36788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCcccC-HHHHHHHHHHhcCc-eeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVS-YETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
.+|||+++..+|+....|.+.+..... ...|+++..||||....-... ......+.++ +++ +.+|+||
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke-ngf~gwtets~ 176 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE-NGFEGWTETSA 176 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc-cCccceeeecc
Confidence 999999999999999999998855432 237889999999986532222 3455566777 444 5888875
No 227
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=8.6e-16 Score=114.40 Aligned_cols=146 Identities=18% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcC-------------------------------CCCcceeeeeEEEEEE
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRT 49 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~ 49 (153)
|..+++ .++++++|..++|||||+.+|+.... .++.....+.+.. .
T Consensus 1 ~~~~k~-~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~--~ 77 (447)
T PLN00043 1 MGKEKV-HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIA--L 77 (447)
T ss_pred CCCCCc-eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEE--E
Confidence 444444 59999999999999999998874211 1111112232333 3
Q ss_pred EeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEe
Q 031777 50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-------NVKQWLNEIDRYASDNV-NKLLVGN 121 (153)
Q Consensus 50 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-~~ilv~~ 121 (153)
.........+.+.|+|||.+|.......+..+|++|+|+|+.+ ..|+ +.+..+...+ ..+. +++++.|
T Consensus 78 ~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vN 153 (447)
T PLN00043 78 WKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF---TLGVKQMICCCN 153 (447)
T ss_pred EEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH---HcCCCcEEEEEE
Confidence 3344445789999999999999888889999999999999986 2332 2222222222 2244 5788999
Q ss_pred cCCCCCC--cc----cCHHHHHHHHHHhc----CceeeecCC
Q 031777 122 KCDLTAN--KV----VSYETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 122 K~D~~~~--~~----~~~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
|+|+.+. .+ -..++++.+.+... .++|+.+||
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa 195 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISG 195 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEec
Confidence 9998521 11 12445666666522 367999987
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=1.6e-15 Score=112.11 Aligned_cols=143 Identities=17% Similarity=0.094 Sum_probs=90.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcC----------------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
....++|+++|..++|||||+++|++... ..+..+..+.+... ..+.....++.+.|+||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChH
Confidence 34569999999999999999999986311 11112233333322 2333344678899999998
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc---CHHHHHHHHHHhc
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKVYLLLYT 144 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~---~~~~~~~~~~~~~ 144 (153)
.+.......+..+|++++|+|+.+.-. .+....+..+. ..+.| ++++.||+|+.+..+. ..+++..+.+...
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~---~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK---QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH---HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887766777888999999999886322 22222222332 22467 7789999999753321 1234444544422
Q ss_pred ----CceeeecCC
Q 031777 145 ----GIFFFYPSP 153 (153)
Q Consensus 145 ----~~~~~~~Sa 153 (153)
..+++.+||
T Consensus 163 ~~~~~~~ii~~Sa 175 (409)
T CHL00071 163 FPGDDIPIVSGSA 175 (409)
T ss_pred CCCCcceEEEcch
Confidence 267888776
No 229
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=1.3e-15 Score=115.27 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcc--------------------eeeeeEEEEEEEeeCCeEEEEEEE
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYI--------------------STIGVDFKIRTVEQDGKTIKLQIW 62 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~ 62 (153)
.+..+..+++|+|..++|||||+++|+......... ...+..+......++...+.+.+|
T Consensus 6 ~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 6 KEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred hhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 345667899999999999999999986411100000 001222332333334445889999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 63 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
||||+.+|.......+..+|++|+|+|..+.-. .....++...+ ..+.|+++++||+|+..
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH---hcCCCEEEEEECccccC
Confidence 999999888777778899999999999986311 22233333332 24689999999999853
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.7e-15 Score=113.44 Aligned_cols=143 Identities=16% Similarity=0.082 Sum_probs=91.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCc------C----------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------Y----------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
....++++++|..++|||||+++|++.. . ..+.....+.+.....+..+ ...+.++|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHH
Confidence 4457999999999999999999998521 1 11222233333333333333 4678999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc---CHHHHHHHHHHh-
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKVYLLLY- 143 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~---~~~~~~~~~~~~- 143 (153)
.|-......+..+|++++|+|+.+...-+ ....+..+.. .+.| ++++.||+|+.+..+. ..++..++....
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 88777777788899999999988643222 2222323322 2466 7889999998653221 122344444431
Q ss_pred ---cCceeeecCC
Q 031777 144 ---TGIFFFYPSP 153 (153)
Q Consensus 144 ---~~~~~~~~Sa 153 (153)
...+++.+||
T Consensus 232 ~~~~~~~~vp~Sa 244 (478)
T PLN03126 232 FPGDDIPIISGSA 244 (478)
T ss_pred CCcCcceEEEEEc
Confidence 1456777775
No 231
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=9.8e-17 Score=105.28 Aligned_cols=116 Identities=25% Similarity=0.355 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEee-CCeEEEEEEEeCCCccccccccccc---ccCccE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTITSSY---YRGAHG 83 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~---~~~~~~ 83 (153)
...|+++|++|||||+|+.+|..+...+..++. .... .+.. +.....+.+.|+|||...+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999987554333222 2111 1112 2223478999999999887644443 788999
Q ss_pred EEEEEECCC-hhhHHHHH-HHHHHHHHhc--CCCCcEEEEEecCCCCC
Q 031777 84 IIIVYDVTD-QESFNNVK-QWLNEIDRYA--SDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 84 ~i~v~d~~~-~~s~~~~~-~~~~~~~~~~--~~~~~~ilv~~K~D~~~ 127 (153)
+|||+|.+. +....... ..++.+.... ....|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999874 33444443 3444443332 35699999999999965
No 232
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.6e-15 Score=109.60 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=83.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc--------cccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 78 (153)
-++++|+|.||+|||||+|.|.+.+. .....|..+.++-...+.++| +.+++.||.|........ ...+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 37999999999999999999997543 333446666677777888888 789999999965443322 3356
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+.+|.+++++|.+.+.+-... ..+. ....+.|+++|.||.|+...
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccc
Confidence 889999999999986222111 1111 34557899999999999764
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.9e-15 Score=113.50 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc------cccccc--c
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--R 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 79 (153)
..+++++|+||+|||||+|++++........|..+.+-..-.+...+ ..+++.|+||...+.. ..+.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999999766555556666555555555555 5699999999654432 233333 4
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++|-|+|.++.+.- +...-+..+-+.|++++.|++|..+.+.+..+. +++.+. .+++.+++||
T Consensus 81 ~~D~ivnVvDAtnLeRn------LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~-~~L~~~-LGvPVv~tvA 146 (653)
T COG0370 81 KPDLIVNVVDATNLERN------LYLTLQLLELGIPMILALNMIDEAKKRGIRIDI-EKLSKL-LGVPVVPTVA 146 (653)
T ss_pred CCCEEEEEcccchHHHH------HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccH-HHHHHH-hCCCEEEEEe
Confidence 56999999999875442 222223334478999999999997765554443 566666 8999999987
No 234
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=3.3e-15 Score=116.79 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC------------------CcceeeeeEEEEEEEeeCCeEEEEEEEeCC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 65 (153)
..++..+|+|+|..++|||||+++|+...... +.....+.+.....+.+++ .++.+||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTP 83 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTP 83 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECC
Confidence 34557899999999999999999997422110 0111223333344455554 789999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|+..+.......+..+|++++|+|..+....+....| ..+. ..+.|+++++||+|+..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~---~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQAN---RYEVPRIAFVNKMDKTG 141 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence 9998887788889999999999999875443322222 2222 23589999999999875
No 235
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=109.46 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc---------ccccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSSYY 78 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 78 (153)
..|+|+|.||+|||||+|+|.+.+.. .+..|..+.+-.+....+.+ ..+.+.||+|.+... .....-+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999986542 33345555555566666666 569999999966332 1223356
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+|++|||+|...--+-.. ......++ ..++|+++|.||+|..
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCc
Confidence 78999999999876333221 11222233 2358999999999974
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=5.2e-15 Score=112.09 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=80.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC----------------------cceeeeeEEEEEEEeeCCeEEEEE
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------------------YISTIGVDFKIRTVEQDGKTIKLQ 60 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 60 (153)
.+.+...+|+|+|..++|||||+++|+....... .....+.......+.++ .+.+.
T Consensus 5 ~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~--~~~in 82 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR--DCLIN 82 (526)
T ss_pred chhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--CEEEE
Confidence 3445678999999999999999999974111000 00011112222334444 47899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 61 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+|||||+.+|.......+..+|++|+|+|..+.-. .....++... ...+.|+++++||+|+..
T Consensus 83 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~---~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 83 LLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC---RLRDTPIFTFINKLDRDG 145 (526)
T ss_pred EEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH---HhcCCCEEEEEECCcccc
Confidence 99999999998877788999999999999986422 1222333222 234689999999999864
No 237
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.64 E-value=2.4e-15 Score=101.13 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeee---EEEEEEEeeCCeEEEEEEEeCCCcccccccccc-----cccC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV---DFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS-----YYRG 80 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-----~~~~ 80 (153)
++|+++|.+|+|||||+|.|.+...........+. +.....+... ....+.+||+||.......... .+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 78999999999999999999985543322222111 1111111111 1236899999997543222222 3567
Q ss_pred ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+|+++++.+ ..+... ..++..++.. +.|+++|+||+|+.
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 888888743 223333 3455555553 47999999999984
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=4.1e-15 Score=111.63 Aligned_cols=144 Identities=20% Similarity=0.161 Sum_probs=86.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcC--CC-------------------------------CcceeeeeEEEEEEEe
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVE 51 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~ 51 (153)
....++|+++|..++|||||+++|+...- .. +.....+.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 34569999999999999999999975321 11 0001122233333333
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 52 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
. ...++.++|+||+..|.......+..+|++++|+|+.+.-.-..... +..+... . ..|++++.||+|+.+.++.
T Consensus 104 ~--~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~l-g-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 T--EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLL-G-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred c--CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHh-C-CCceEEEEEeeccccchhH
Confidence 3 34688999999998886656666789999999999875321111111 1122222 1 2478999999998643221
Q ss_pred CHH----HHHHHHHHh---cCceeeecCC
Q 031777 132 SYE----TAKVYLLLY---TGIFFFYPSP 153 (153)
Q Consensus 132 ~~~----~~~~~~~~~---~~~~~~~~Sa 153 (153)
..+ +..++.+.. ...+++.+||
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA 207 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSA 207 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEe
Confidence 122 222333331 2467888886
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.63 E-value=8.7e-15 Score=107.84 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=89.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcC----------------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
....++|+++|..++|||||+++|++... ..+..+..+.+.. ...+.....++.+.|+||+.
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHH
Confidence 34579999999999999999999986210 1112233333333 33343344678899999998
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCCCccc---CHHHHHHHHHHh-
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETAKVYLLLY- 143 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-lv~~K~D~~~~~~~---~~~~~~~~~~~~- 143 (153)
.|.......+..+|++++|+|..+.-. ......+..+.. .+.|.+ ++.||+|+.+..+. ..++..++....
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887666677889999999999886422 222223333322 246765 68999999642221 122333443331
Q ss_pred ---cCceeeecCC
Q 031777 144 ---TGIFFFYPSP 153 (153)
Q Consensus 144 ---~~~~~~~~Sa 153 (153)
...+++.+||
T Consensus 163 ~~~~~~~iv~iSa 175 (396)
T PRK00049 163 FPGDDTPIIRGSA 175 (396)
T ss_pred CCccCCcEEEeec
Confidence 2367888886
No 240
>PRK13351 elongation factor G; Reviewed
Probab=99.63 E-value=4.9e-15 Score=115.93 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=82.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC--------CC----------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI--------ES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
+...+|+|+|..++|||||+++|+..... .. .....+.......+.+. ...+.+||+||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCc
Confidence 45789999999999999999999853210 00 00111112222334444 478999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.++...+..+++.+|++++|+|.++.........|. .+. ..+.|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~---~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QAD---RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---hcCCCEEEEEECCCCCC
Confidence 999888899999999999999998866655443332 222 23689999999999865
No 241
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.62 E-value=2e-14 Score=101.39 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc-------c
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-------S 75 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~ 75 (153)
+....++|+++|.+|+||||++|++++..... ....+.+..........++ .++.++||||..+..... .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34567999999999999999999999865321 1111111111122223444 789999999965432111 1
Q ss_pred ccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCCcccC
Q 031777 76 SYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVVS 132 (153)
Q Consensus 76 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ilv~~K~D~~~~~~~~ 132 (153)
.++ ...|++|||..++.....+.-...++.+....+. -.+.++++|+.|....+..+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 111 2589999997665332212223345555544332 25799999999976543333
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.62 E-value=9.4e-15 Score=108.92 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=90.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCc--C-----------------------------CCCcceeeeeEEEEEE
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------IESYISTIGVDFKIRT 49 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~ 49 (153)
|..+++ .++++++|..++|||||+.+|+... . .++.....+.+.....
T Consensus 1 ~~~~k~-~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~ 79 (446)
T PTZ00141 1 MGKEKT-HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK 79 (446)
T ss_pred CCCCCc-eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE
Confidence 444444 5999999999999999999987511 1 1111222333333333
Q ss_pred EeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEec
Q 031777 50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASDNVN-KLLVGNK 122 (153)
Q Consensus 50 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-~ilv~~K 122 (153)
+ ......+.++|+|||.+|.......+..+|++++|+|..+... + .+....+..+.. .+.| ++++.||
T Consensus 80 ~--~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNK 154 (446)
T PTZ00141 80 F--ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINK 154 (446)
T ss_pred E--ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEc
Confidence 3 3444789999999999998888888899999999999886321 1 112222222222 2444 7899999
Q ss_pred CCCC--CCccc----CHHHHHHHHHHh----cCceeeecCC
Q 031777 123 CDLT--ANKVV----SYETAKVYLLLY----TGIFFFYPSP 153 (153)
Q Consensus 123 ~D~~--~~~~~----~~~~~~~~~~~~----~~~~~~~~Sa 153 (153)
+|+. +..+- ..++.++..... ..++++.+||
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa 195 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISG 195 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeec
Confidence 9953 21111 123333333331 1367888886
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.62 E-value=4.4e-15 Score=109.69 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC--CC-------------------------------CcceeeeeEEEEEEEeeCCe
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSY--IE-------------------------------SYISTIGVDFKIRTVEQDGK 55 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (153)
++|+++|..++|||||+++|+.... .. +.....+.+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 4899999999999999999974221 10 001112233333334333
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC---
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--- 132 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~--- 132 (153)
..++.++|+||+..|.......+..+|++++|+|....-.-+..+.+ ..+... . ..+++++.||+|+.+.+...
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 36889999999998876666678899999999998754221111111 122222 1 24689999999986432211
Q ss_pred -HHHHHHHHHH--hcCceeeecCC
Q 031777 133 -YETAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 133 -~~~~~~~~~~--~~~~~~~~~Sa 153 (153)
.++..++.+. +.+.+++.+||
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA 179 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSA 179 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeec
Confidence 1222233333 12356888887
No 244
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.61 E-value=5.2e-15 Score=93.34 Aligned_cols=122 Identities=25% Similarity=0.239 Sum_probs=80.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----cccccccccccCccEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----RFRTITSSYYRGAHGII 85 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~~~~i 85 (153)
||+++|+.|+|||||+++|.+.... +..|+... +.+ .++|+||.- .+..-.......+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 7999999999999999999985542 22222211 111 358999953 22222233446789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++.|.+++.+.-. +.+... -+.|+|=|.||+|+.. +..+.+.++++.+.-..-..|++||
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEEC
Confidence 9999998654211 111111 2479999999999974 2456777888887734445788886
No 245
>PLN03127 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.7e-14 Score=107.49 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=76.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC------c----------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD------S----------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
...++|+++|..++|||||+++|.+. . ..++..+..+.+... ..+.....++.+.|+||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAH--VEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeE--EEEcCCCeEEEEEECCCccc
Confidence 45699999999999999999999631 1 012222333433333 33444446889999999988
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCC
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA 127 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~ 127 (153)
|-......+..+|++++|+|..+... .+....+..+. ..+.| ++++.||+|+.+
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~---~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR---QVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEeeccCC
Confidence 76656666677999999999876422 12222222222 23467 578999999975
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=104.29 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=90.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc---------ccccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---------ERFRTITSS 76 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~---------~~~~~~~~~ 76 (153)
.....|.++|++|+|||||+|+|.+.........+.+.+.+...+.+.+ ...+.+-||.|- +.|++. -.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-LE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-LE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-HH
Confidence 4568899999999999999999998665545455555556666666664 357889999982 122332 22
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
....+|+++.|+|.+++...+.+..-.+.+....-.+.|+++|.||+|+..
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 346789999999999998877887777777776656699999999999754
No 247
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=5.1e-14 Score=94.63 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCc--ceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc-----------ccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESY--ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-----------ITS 75 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 75 (153)
++|+++|.+|+|||||+|++++....... .+..+..+......+++ ..+.++||||-.+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999986543222 11222233333444455 5799999999654321 111
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDLTA 127 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~ 127 (153)
....++|++|+|+++.+ -+ ......++.++...+.+ .++++|+|+.|...
T Consensus 79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 23467899999999876 22 22234455555544321 57899999999754
No 248
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.59 E-value=6.3e-15 Score=115.58 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCc---------------CCCC---cceeeeeEEEEEEEeeCCeEEEEEEEeCC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS---------------YIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 65 (153)
+.++..||+++|..++|||||+++|+... +... +..+............++..+.+.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 44567899999999999999999997521 1110 11122211222223355667899999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
|+.+|.......+..+|++|+|+|..+.-..+....| +.....+.|+++++||+|+.
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~----~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL----RQALKENVKPVLFINKVDRL 151 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH----HHHHHcCCCEEEEEEChhcc
Confidence 9999887788889999999999998763222222222 22223356888999999985
No 249
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=6.7e-14 Score=102.04 Aligned_cols=141 Identities=26% Similarity=0.222 Sum_probs=92.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc-CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc-----------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----------- 74 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------- 74 (153)
..++++|+|.|++|||||+|++++.+ ......+..+.+.-...+.+++ .++.+.||.|-..-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 46999999999999999999999743 2333345555555556666777 578899999943221111
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeee
Q 031777 75 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFY 150 (153)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~ 150 (153)
...+..++++++|+|.+++-+-+..+ ........+.++++|.||+|+.+++....++.++..+. ....+.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~----ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLR----IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHH----HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 12346689999999999865543322 11222234679999999999987655555554433332 23445666
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
+||
T Consensus 331 iSA 333 (444)
T COG1160 331 ISA 333 (444)
T ss_pred EEe
Confidence 665
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=112.31 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=85.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC---------------------------------cceeeeeEEEEEEEe
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---------------------------------YISTIGVDFKIRTVE 51 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 51 (153)
....++|+++|.+++|||||+++|+....... .....+.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999986321100 001111122222333
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 52 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
.+ ..++.++|+||+..+.......+..+|++++|+|..+...-+ ....+..+... + ..+++++.||+|+.+..+-
T Consensus 101 ~~--~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 101 TP--KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred cC--CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh-C-CCeEEEEEEecccccchhH
Confidence 33 357889999999887665556788999999999987532211 11111122222 1 2578999999998642211
Q ss_pred CH----HHHHHHHHH--hcCceeeecCC
Q 031777 132 SY----ETAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 132 ~~----~~~~~~~~~--~~~~~~~~~Sa 153 (153)
.. ++..++... +...+++.+||
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA 203 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISA 203 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEec
Confidence 11 222333333 12345888886
No 251
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=94.23 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=78.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc----------cccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTITS 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~ 75 (153)
+....|+++|.+|+|||||||+|++.+-......+++.+.....+.+++ .+.+.|.||- +.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999999663333344444445555555665 3889999992 33344555
Q ss_pred ccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 76 SYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 76 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
.|+.. -.++++++|..-+-.-.+ ..+++.+. ..+.|+++++||+|.....+.
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~---~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLL---ELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHH---HcCCCeEEEEEccccCChhHH
Confidence 56544 357888888764322211 12233332 237899999999998765443
No 252
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=6.7e-14 Score=96.97 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc---c-----
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---I----- 73 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~----- 73 (153)
++.+..++|+++|.+|+|||||+|+|++...... .....+..........++ .++.++||||...... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 3455679999999999999999999998654222 111122222222333444 6789999999654410 0
Q ss_pred --cccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCC
Q 031777 74 --TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDLTAN 128 (153)
Q Consensus 74 --~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~~ 128 (153)
...+++ ..|+++++..++....-..-...++.+....+.+ .++++|.||+|...+
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 122332 5688888876664322122234555555544322 579999999998643
No 253
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.58 E-value=6.3e-14 Score=95.87 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceee--------------e-------eEEEE-----------------EEEe
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTI--------------G-------VDFKI-----------------RTVE 51 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~--------------~-------~~~~~-----------------~~~~ 51 (153)
+++++|+.++|||||+.++..+.+........ + ..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998654432111000 0 00000 1111
Q ss_pred eCCeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 52 QDGKTIKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 52 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
. ....+.+.|+||+..+.......+. .+|++++|+|+..... .....++..+. ..+.|+++|.||+|+.++
T Consensus 81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~---~~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL---ALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH---HcCCCEEEEEECccccCH
Confidence 1 2357889999999888655444443 6899999999876433 22223333332 235789999999998653
No 254
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=2.4e-14 Score=99.85 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=91.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----cc---cccC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----SS---YYRG 80 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~---~~~~ 80 (153)
...+-++|.|++|||||++.+...+-.....+..+.....-.+.+++.. .+.+-|.||.-.-..+. .. .+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 3567899999999999999999755322222333333333344444433 48999999953222211 11 2456
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+..++||+|++.. .-|+++......+..+.+ .+.|.++|.||+|+.+..+- ...++++...+-..+.+||
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~---~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN---LLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH---HHHHHHHHcCCCcEEEeee
Confidence 7999999999988 778877776666665544 46899999999998532211 1244444423334677765
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=7.4e-14 Score=109.29 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=82.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCC------------------CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
.++..+|+|+|..++|||||+++|+..... .+.....+.+.....+.+++ .++.++||||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG 82 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG 82 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence 446789999999999999999999752110 01122233334444555555 6899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+..+.......+..+|++|+|+|..+.-.-+.. ..+..+ ...+.|.+++.||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~---~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA---DKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH---HHcCCCEEEEEECCCCCC
Confidence 988877788889999999999998865332222 222222 234679999999999875
No 256
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=1.4e-13 Score=107.79 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCC------------------CCcceeeeeEEEEEEEeeCCeEEEEEEEeCC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 65 (153)
+.++..+|+|+|..++|||||+++|+..... .+.....+.+.....+.+.+ ..+.+.|||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTP 83 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTP 83 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCC
Confidence 3556789999999999999999999741110 00122233333344455554 689999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
|+.++.......+..+|++|+|+|....-.-+....|. .+ ...+.|.+++.||+|+.+.
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~---~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QA---DKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HH---HHcCCCEEEEEECCCCCCC
Confidence 99887766777788899999999987643332222222 22 2335789999999998753
No 257
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.1e-13 Score=99.70 Aligned_cols=143 Identities=22% Similarity=0.257 Sum_probs=94.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc--C-----------------------------CCCcceeeeeEEEEEEEeeCCe
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------IESYISTIGVDFKIRTVEQDGK 55 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (153)
..++++++|...+|||||+-+|+... + .+++.. +.++..........
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~fet~ 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKFETD 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEeecC
Confidence 36999999999999999999987531 1 111222 22333344444555
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
.+.+.+.|+|||.+|-......+..+|+.|||+|+.+.+ .|. +.+. ...+....+ -..+|++.||+|+.+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG-i~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG-IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC-CceEEEEEEcccccccC
Confidence 578999999999999998888999999999999998753 111 1111 112222222 25799999999998755
Q ss_pred ccCHHHHH----HHHHH--hc--CceeeecCC
Q 031777 130 VVSYETAK----VYLLL--YT--GIFFFYPSP 153 (153)
Q Consensus 130 ~~~~~~~~----~~~~~--~~--~~~~~~~Sa 153 (153)
+-..++.. .+.+. ++ +.+|+.+||
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg 193 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISG 193 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEeccc
Confidence 54444433 33333 12 356888886
No 258
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.55 E-value=1.2e-13 Score=85.85 Aligned_cols=105 Identities=26% Similarity=0.294 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcc-eeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
+|++++|..|+|||+|+.++....+...+. ++.+ +......+.+..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997766654333 2222 222234466778999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL 142 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~ 142 (153)
|+..++.+++.. |.+.+....+.+.|.++++||.|+.++.++..+++..+++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~ 106 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEFAET 106 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHHHHH
Confidence 999999998766 77777665566789999999999865556777766666654
No 259
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.54 E-value=5e-14 Score=97.95 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=81.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc------------c
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------------R 71 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------------~ 71 (153)
+..+..+|+|+|.||+|||||.|.+.+.+.........++.....-+ +.....++.++||||.-.- -
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34567999999999999999999999987655544444433333333 2233469999999993221 1
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
+..+..+.++|.+++++|+++....-.- ..+..++... ..|-++|.||.|...++
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQK 201 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhh
Confidence 2234456778999999999974332211 2233333332 37889999999987543
No 260
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-14 Score=96.96 Aligned_cols=143 Identities=23% Similarity=0.328 Sum_probs=91.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCC--CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-----ccccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE--SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYYR 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~~ 79 (153)
.+-||+++|.+|||||++=..+.. .+.. ...++.+.++...+..+-| +..+.+||++|++.+ .......+.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~-ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFA-NYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred ccceEEEeccCCCCccccchhhhh-hhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 356899999999999997554442 2211 2223333445544443333 367889999998843 234566789
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCCCc--ccCHH----HHHHHHHHhcCceeeec
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANK--VVSYE----TAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ilv~~K~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~~ 151 (153)
++++++++||++..+.-..+..+-..+.... .+...+++..+|.|+.... +...+ ..+.+... .++.++.+
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~-~~~~~f~T 159 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRP-LECKCFPT 159 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhccc-cccccccc
Confidence 9999999999998776666665544443333 2468899999999997543 22222 23344444 55666666
Q ss_pred C
Q 031777 152 S 152 (153)
Q Consensus 152 S 152 (153)
|
T Consensus 160 s 160 (295)
T KOG3886|consen 160 S 160 (295)
T ss_pred c
Confidence 5
No 261
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.5e-13 Score=99.80 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=92.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC-eEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+.+=|.++|.-..|||||+..+...+.........+-.+...++..+. ....+.++|||||+.|..++.+...-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 346688999999999999999999887766666666666666665542 2347899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+|+++++--.-+ ..+.+......+.|++++.||+|..+
T Consensus 84 LVVa~dDGv~pQ----TiEAI~hak~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 84 LVVAADDGVMPQ----TIEAINHAKAAGVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEccCCcchh----HHHHHHHHHHCCCCEEEEEecccCCC
Confidence 999999733222 23455555566899999999999974
No 262
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.53 E-value=4.6e-14 Score=112.30 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=83.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCC--C--------------CcceeeeeEEEEEEEee-------------
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYI--E--------------SYISTIGVDFKIRTVEQ------------- 52 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~------------- 52 (153)
.++.++..+|+|+|..++|||||+++|+..... . +.....+.......+.+
T Consensus 13 ~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 13 MDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred hhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 345677899999999999999999999853311 0 00111111111222222
Q ss_pred -CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 53 -DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 53 -~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
++..+.+.++|+|||.+|.......+..+|++|+|+|+.+.-.......| +.....+.|++++.||+|+.
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~----~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH----HHHHHCCCCEEEEEECCccc
Confidence 12357889999999999988888888999999999998865433332223 33334578999999999986
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.8e-14 Score=98.92 Aligned_cols=119 Identities=22% Similarity=0.341 Sum_probs=79.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEE-EEeeCCeEEEEEEEeCCCccc-------cccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR-TVEQDGKTIKLQIWDTAGQER-------FRTITSSY 77 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~ 77 (153)
...++++++|.+|+|||||+|+|..+...+-.....+.+.... ..++++ -.+.+||+||-.+ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 3569999999999999999999996554333221222222222 223344 3688999999544 55667778
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+...|.++++.+..|+.---.. ..+..+...+- +.+++++.|.+|....
T Consensus 115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEP 163 (296)
T ss_pred hhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhcc
Confidence 8899999999999886432222 33333333333 3799999999998643
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=1.4e-13 Score=98.77 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCC
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCD 124 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D 124 (153)
++.+.+||.+|+...+..|.+++.+++++|||+|+++. ..+.+....+..+-.. .-.+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 37899999999999999999999999999999999874 3333333333333222 225799999999999
Q ss_pred CC
Q 031777 125 LT 126 (153)
Q Consensus 125 ~~ 126 (153)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 74
No 265
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.8e-13 Score=100.44 Aligned_cols=143 Identities=18% Similarity=0.184 Sum_probs=95.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC---------------CCcceeeeeEEEEEE-EeeCCeEEEEEEEeCCCccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI---------------ESYISTIGVDFKIRT-VEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~g~~~ 69 (153)
++..|+.|+..-..|||||..+|+..... -++....+....... +..+++.+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 56789999999999999999998763221 011112222111111 22337779999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHHhcCcee
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLLYTGIFF 148 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (153)
|.....+.+..|+++|+|+|.++--.-+....++-.+ +.+..+|.|.||+|+...+. .-..+...+-.. ++.+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~-~~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDI-PPAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC-Cccce
Confidence 9999999999999999999998743333333333333 44788999999999975432 112223333333 55567
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+.+||
T Consensus 213 i~vSA 217 (650)
T KOG0462|consen 213 IYVSA 217 (650)
T ss_pred EEEEe
Confidence 77776
No 266
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.51 E-value=3.6e-13 Score=96.28 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=52.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEE--EEEE-------------------eeCC-eEEEEEEEeCCCc-
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK--IRTV-------------------EQDG-KTIKLQIWDTAGQ- 67 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~-~~~~~~~~d~~g~- 67 (153)
|.++|.+++|||||++++++........|..+.+.. ...+ ..++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999986643221122211111 1111 1222 3367999999997
Q ss_pred ---ccccccccc---cccCccEEEEEEECC
Q 031777 68 ---ERFRTITSS---YYRGAHGIIIVYDVT 91 (153)
Q Consensus 68 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 91 (153)
.....+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333334 488999999999997
No 267
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=6.1e-13 Score=98.78 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=92.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+..-|-|+|.-..|||||+..|.............+..+....+..+.. -.+.+.|||||..|..|+.+...-.|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4567889999999999999999998876665665555566555555533 589999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|+..+|--.- +.++.+......+.|+++..||+|..+
T Consensus 231 VVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 231 VVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPG 267 (683)
T ss_pred EEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCC
Confidence 9999873322 234566666667899999999999764
No 268
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.48 E-value=5.4e-13 Score=96.50 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDL 125 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~ 125 (153)
+.+.+||.+|+...+..|.+++.+++++|||+|+++. ..+.+....+..+-.. .-.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 6789999999999999999999999999999999973 2343333333333322 2256999999999998
Q ss_pred C
Q 031777 126 T 126 (153)
Q Consensus 126 ~ 126 (153)
.
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 5
No 269
>PTZ00416 elongation factor 2; Provisional
Probab=99.48 E-value=2e-13 Score=108.55 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=80.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC----------------CcceeeeeEEEEEEEeeC--------CeEEEE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------SYISTIGVDFKIRTVEQD--------GKTIKL 59 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~ 59 (153)
+.+...+|+|+|..++|||||+++|+...... +.....+.......+.+. +....+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 45667899999999999999999998632110 000111111111222232 225789
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 60 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
.+.||||+.+|.......++.+|++|+|+|..+.-..+....| +.....+.|++++.||+|+.
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~----~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL----RQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH----HHHHHcCCCEEEEEEChhhh
Confidence 9999999999888778888999999999998874332222222 33333467999999999985
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.46 E-value=6.3e-13 Score=99.20 Aligned_cols=146 Identities=11% Similarity=0.129 Sum_probs=88.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc---CCCCcceeeeeEEEEEEE---------------eeCC-------------
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTV---------------EQDG------------- 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~---------------~~~~------------- 54 (153)
...++|.++|.-..|||||+.+|.+.. +.++.....+.+...... ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 446899999999999999999999732 233322222221111100 0000
Q ss_pred ---eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 55 ---KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 55 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
....+.+.|+|||+.|-......+..+|++++|+|+.+.....+....+..+... . -.+++++.||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-K-LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-C-CCcEEEEEecccccCHHHH
Confidence 0246889999999998877777888999999999998642111222222222222 2 1478999999998642211
Q ss_pred --CHHHHHHHHHH--hcCceeeecCC
Q 031777 132 --SYETAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 132 --~~~~~~~~~~~--~~~~~~~~~Sa 153 (153)
..++.+++... ..+.+++.+||
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA 215 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISA 215 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeC
Confidence 12233333322 13567899887
No 271
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.46 E-value=1.4e-13 Score=99.45 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=57.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-ccee--eeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccc-----c
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES-YIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY-----Y 78 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~-----~ 78 (153)
..++|+|+|.+|+|||||||+|.+-...++ ..++ ..++.....+..+.. -++.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 468999999999999999999987322111 1111 111112222222222 258999999965443323333 4
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
...|.+|++.+ +.|.....++.. .....+.|+.+|-||+|.
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~--~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAK--EIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHH--HHHHTT-EEEEEE--HHH
T ss_pred cccCEEEEEeC----CCCchhhHHHHH--HHHHcCCcEEEEEecccc
Confidence 55688888776 344444333332 222335799999999996
No 272
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=9.3e-13 Score=89.53 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcc--eeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc--------c---cc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYI--STIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT--------I---TS 75 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~---~~ 75 (153)
++|+++|.+|+||||++|.+++........ .+.+..+.......++ ..+.++||||-.+... + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999866543321 1223334444556677 6789999999432211 1 11
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCCc
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDLTANK 129 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~~~ 129 (153)
....+.|++|||+.... -+- .-...++.+....+++ ..++||+|..|...+.
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred hccCCCeEEEEEEecCc-chH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 23467899999999883 222 2223444444443322 4688888888865543
No 273
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.44 E-value=4.4e-13 Score=98.57 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=101.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc--cccc-----
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR--TITS----- 75 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~--~~~~----- 75 (153)
.-.+....++|+|.+++|||||++.+........+-++.+......++.+.. ..+++.||||.-+.- ....
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHH
Confidence 3445668899999999999999999988776666556655555555555554 688999999954321 1110
Q ss_pred --ccccCccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH---HHHHHHhcCcee
Q 031777 76 --SYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA---KVYLLLYTGIFF 148 (153)
Q Consensus 76 --~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~---~~~~~~~~~~~~ 148 (153)
....--.+|+|+.|++..+ |.......+..++.... +.|.|+|.||+|+......+.+.. +..... .++++
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~v~v 318 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GNVKV 318 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhc-cCceE
Confidence 0111235899999999754 55556667888877766 689999999999987666666553 344444 66778
Q ss_pred eecC
Q 031777 149 FYPS 152 (153)
Q Consensus 149 ~~~S 152 (153)
+++|
T Consensus 319 ~~tS 322 (620)
T KOG1490|consen 319 VQTS 322 (620)
T ss_pred EEec
Confidence 8876
No 274
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=7.3e-13 Score=104.33 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=79.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-c---------------ceeeeeEEEEE--EEeeCCeEEEEEEEeCC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-Y---------------ISTIGVDFKIR--TVEQDGKTIKLQIWDTA 65 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~d~~ 65 (153)
+.++..+|+|+|..++|||||+++|+....... . ....+...... .+.+++.+..+.++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 456678999999999999999999985321100 0 00111111111 22234456889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
|+.+|.......+..+|++|+|+|....-..+....|....+ .+.|.+++.||+|+.
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 999998888888999999999999876433222222332222 245789999999975
No 275
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=2.2e-12 Score=91.04 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-ccc---ccccc---ccCcc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRT---ITSSY---YRGAH 82 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~---~~~~~---~~~~~ 82 (153)
-|-++|.|++|||||++.+...+-.....|..+.....-.+.... .-.+.+=|.||.-. ... +=..| +..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467899999999999999997553322223332222222222222 23688999999421 111 11122 34578
Q ss_pred EEEEEEECCChhh---HHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHH
Q 031777 83 GIIIVYDVTDQES---FNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLL 142 (153)
Q Consensus 83 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~ 142 (153)
+++.|+|++..+- .+........+..+.+ .+.|.+||+||+|+....+...+..+.+.+.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh
Confidence 9999999985432 3344444444444432 4589999999999754333333333344433
No 276
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.42 E-value=4.4e-12 Score=94.74 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=96.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.....+++.|+|+.++|||.|++.++++.+..+...+....+....+...++...+.+.|.+.. ...-..... ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 4456799999999999999999999998877765555555555555555577777888888754 222222222 78999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHH
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLL 142 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~ 142 (153)
+.++||.+++.+|..+...++.-... ...|+++|++|+|+.+..+ ...+. .+++++
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~ 555 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQ 555 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHh
Confidence 99999999999998877655544443 4689999999999976432 33333 555555
No 277
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6.1e-13 Score=88.07 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=79.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccccc---Ccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR---GAH 82 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~~ 82 (153)
.++-.|+++|+.+||||+|+-.|..+.+....++-. .....+..... .+.+.|.|||.+.+.....+++ .+-
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie---pn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE---PNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeec---cceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccce
Confidence 344679999999999999999999875543332221 22223323332 3789999999999887777777 689
Q ss_pred EEEEEEECCC--hhhHHHHHHHHHHHHHh--cCCCCcEEEEEecCCCC
Q 031777 83 GIIIVYDVTD--QESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 83 ~~i~v~d~~~--~~s~~~~~~~~~~~~~~--~~~~~~~ilv~~K~D~~ 126 (153)
+++||+|..- ++--+-....++-+... .....|+++..||.|+.
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 9999999752 22222233355555444 35668999999999995
No 278
>PRK12740 elongation factor G; Reviewed
Probab=99.42 E-value=1.5e-12 Score=101.91 Aligned_cols=108 Identities=21% Similarity=0.240 Sum_probs=75.2
Q ss_pred EcCCCCcHHHHHHHHhcCcCCC------------------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccc
Q 031777 14 IGDSGVGKSCLLLRFADDSYIE------------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS 75 (153)
Q Consensus 14 ~G~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 75 (153)
+|..++|||||+++|....... +.....+.......+.+.+ +.+.+||+||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 5899999999999996432110 0112222333334454554 7899999999988877788
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
..+..+|++++++|.++.........|. .+. ..+.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH---HcCCCEEEEEECCCCCC
Confidence 8899999999999998765554333332 222 23689999999999864
No 279
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.41 E-value=2.8e-11 Score=85.36 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=69.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc----------ceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY----------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER------- 69 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~------- 69 (153)
..++|+|+|.+|+|||||||.|.+....... ..+...........-++..+++.++||||-.+
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999986543331 12223333344455677889999999999110
Q ss_pred -----------c--------cccc-cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 70 -----------F--------RTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 70 -----------~--------~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+ ...+ ...=..+|++|+.++.+...- .. .-+..++.... -.++|-|..|+|..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L-~~--~Di~~mk~Ls~-~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL-KP--LDIEFMKRLSK-RVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS--H--HHHHHHHHHTT-TSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc-hH--HHHHHHHHhcc-cccEEeEEeccccc
Confidence 0 0000 011134699999999875322 11 12344555545 38899999999974
No 280
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=6.9e-12 Score=91.99 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=87.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcC---------------CCCcceeeeeEEEE--EEEe-eCCeEEEEEEEeCC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSY---------------IESYISTIGVDFKI--RTVE-QDGKTIKLQIWDTA 65 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~d~~ 65 (153)
..++..|..|+..-..|||||..|++.... .-+.....+..... ..+. -+|+.+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 445678899999999999999999875321 11112222222222 2222 35688999999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
||.+|.....+.+..|.+.++++|.++--.-+.+...+..+ ..+.-++-|.||+||..
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl----e~~LeIiPViNKIDLP~ 142 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENNLEIIPVLNKIDLPA 142 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH----HcCcEEEEeeecccCCC
Confidence 99999999999999999999999999754444444444444 44678999999999975
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.1e-11 Score=88.02 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=94.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc---------------------------------CCCCcceeeeeEEEEEEEeeC
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS---------------------------------YIESYISTIGVDFKIRTVEQD 53 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (153)
..++++-+|.-.-||||||-||+... +..++....++++.++.+ .
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--s 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--S 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--c
Confidence 46899999999999999999998643 111222233444444444 4
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH
Q 031777 54 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY 133 (153)
Q Consensus 54 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~ 133 (153)
....+|.+-|||||++|..........+|+.|+++|.-. .-+++.+ -...+....+- ..+++..||+||.+.++-..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTr-RHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTR-RHSFIASLLGI-RHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhH-HHHHHHHHhCC-cEEEEEEeeecccccCHHHH
Confidence 455899999999999999988888999999999999742 2222222 22333333342 57999999999987554333
Q ss_pred HHH----HHHHHHhcCc---eeeecCC
Q 031777 134 ETA----KVYLLLYTGI---FFFYPSP 153 (153)
Q Consensus 134 ~~~----~~~~~~~~~~---~~~~~Sa 153 (153)
++. ..++.+ .+. .++..||
T Consensus 160 ~~I~~dy~~fa~~-L~~~~~~~IPiSA 185 (431)
T COG2895 160 EAIVADYLAFAAQ-LGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHHHHH-cCCCcceEEechh
Confidence 332 355555 333 4666665
No 282
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.37 E-value=1.7e-11 Score=93.67 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=75.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc----------cc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------IT 74 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~ 74 (153)
+..++|+++|.+|+||||++|+|++... ........+..........++ ..+.++||||...... ..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 4568999999999999999999998653 222111112222222223444 6799999999654321 11
Q ss_pred ccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCC
Q 031777 75 SSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDLTA 127 (153)
Q Consensus 75 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~ 127 (153)
..++. .+|++|+|..+.......+-..++..+....+.+ ...|||+|..|...
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12333 4799999998764333223335666666665533 56899999999875
No 283
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=2.4e-11 Score=88.79 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=56.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQER 69 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~ 69 (153)
....++|.|+|.||+|||||+|+|.+........|..+.+.....+.++.. ..++.+.|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345689999999999999999999886654333344443333333333321 23589999999542
Q ss_pred ccc-------cccccccCccEEEEEEECC
Q 031777 70 FRT-------ITSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 70 ~~~-------~~~~~~~~~~~~i~v~d~~ 91 (153)
-.. ..-..++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 111 1122357799999999973
No 284
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.8e-12 Score=94.18 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-ccc--------ccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRT--------ITSSY 77 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~--------~~~~~ 77 (153)
-++|+|+|.||+|||||+|.|...+. ...+.+..+.+.-...++++| +.+.+.||.|... -.. ..+.-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 48999999999999999999997543 233345555555556666777 8899999999654 111 11224
Q ss_pred ccCccEEEEEEECCC--hhhHHHHHHHHHHHHHhcC------CCCcEEEEEecCCCCCC
Q 031777 78 YRGAHGIIIVYDVTD--QESFNNVKQWLNEIDRYAS------DNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~------~~~~~ilv~~K~D~~~~ 128 (153)
+..+|++++|+|... -++-..+...+........ ...|++++.||.|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 567899999999843 2222223334443332222 23799999999999653
No 285
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.6e-12 Score=98.31 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=86.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC------------------cceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES------------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
..+..+|.|+|.-.+|||||..+++......+ .....+.......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 45679999999999999999999885321111 111223233333444443 58999999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|.+|.......++-+|++++|+|..+--..+.-..|.+.. ..+.|.+++.||+|...
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence 9999999999999999999999998754444444444444 45789999999999864
No 286
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.35 E-value=6.4e-12 Score=89.96 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=60.3
Q ss_pred EEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-------hHHHHHHHHHHHHHhcC----CC
Q 031777 45 FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEIDRYAS----DN 113 (153)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~ 113 (153)
+....+.+.+ ..+.++|.||+..-+..|.+++.+++++|||+++++.+ .-..+..-+..+...++ .+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 4444555555 78999999999999999999999999999999998632 12223333444444433 56
Q ss_pred CcEEEEEecCCCCC
Q 031777 114 VNKLLVGNKCDLTA 127 (153)
Q Consensus 114 ~~~ilv~~K~D~~~ 127 (153)
.++||++||.|+.+
T Consensus 263 tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 263 TSIILFLNKKDLFE 276 (354)
T ss_pred CcEEEEeecHHHHH
Confidence 99999999999964
No 287
>PRK09866 hypothetical protein; Provisional
Probab=99.34 E-value=3.7e-11 Score=91.66 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=58.5
Q ss_pred EEEEEEeCCCcccc-----cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 57 IKLQIWDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 57 ~~~~~~d~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
.++.+.||||.... .......+..+|+++||+|..+..+... ......++.. +.+.|+++|.||+|+.++..-
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence 36778999996532 2223346889999999999887444332 2233344332 223599999999998643333
Q ss_pred CHHHHHHHHHHh------cCceeeecCC
Q 031777 132 SYETAKVYLLLY------TGIFFFYPSP 153 (153)
Q Consensus 132 ~~~~~~~~~~~~------~~~~~~~~Sa 153 (153)
..+...++.... ....+|.+||
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSA 335 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSS 335 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 345555554321 1335788887
No 288
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=1.4e-11 Score=80.73 Aligned_cols=63 Identities=25% Similarity=0.342 Sum_probs=42.9
Q ss_pred EEEEEeCCCccc----ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 031777 58 KLQIWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123 (153)
Q Consensus 58 ~~~~~d~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~ 123 (153)
.+.++|+||... ...+...++..+|++|+|.+.+...+-.....+.+.... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---CCCeEEEEEcCC
Confidence 567999999643 235567788999999999999985554444444433333 334599999985
No 289
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=3.5e-11 Score=82.55 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=76.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
....|+++|.+|+|||||++.+.+...........+ .+ .+ .......+.++|+||.. .. ....++.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence 347799999999999999999886421111111111 11 11 11233578899999864 22 2234678999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCccc---CHHHHHH-HHH-HhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETAKV-YLL-LYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~~---~~~~~~~-~~~-~~~~~~~~~~Sa 153 (153)
++|......... ...+..+.. .+.| +++|.||+|+.+.... ..++.++ +.. .+.+.+++.+||
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 999875433222 222333332 2456 4569999998643211 1122222 222 235567777764
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.32 E-value=2e-11 Score=89.36 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=95.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--cCCCCcce------------eeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADD--SYIESYIS------------TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT 72 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 72 (153)
...+|+|+..-..|||||+..|+.. .|...... .-+.++-.+...+....+.+.+.|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3578999999999999999999853 22221111 123344444444455558999999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHH-----HhcC
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYETAKVYLL-----LYTG 145 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~~~~~~~-----~~~~ 145 (153)
..++.++-+|++++++|..+-..-+. +. .++.....+.+-|+|.||+|....+. |-.+-...+.. +..+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999999987333221 11 12222234677799999999976442 32222222221 2367
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
++.+..||
T Consensus 160 FPivYAS~ 167 (603)
T COG1217 160 FPIVYASA 167 (603)
T ss_pred CcEEEeec
Confidence 78888775
No 291
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=4.8e-11 Score=89.19 Aligned_cols=94 Identities=18% Similarity=0.401 Sum_probs=63.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC--eEEEEEEEeCCCcccccccccccccCc----
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG--KTIKLQIWDTAGQERFRTITSSYYRGA---- 81 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~---- 81 (153)
.-+|+|+|..++|||||+.+|.+.+. ..++.+.++.+..+.-++ ....+.+|.+.|...+..+....+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 36899999999999999999987542 334455555554443221 235789999998777777666555432
Q ss_pred cEEEEEEECCChhhHH-HHHHHHH
Q 031777 82 HGIIIVYDVTDQESFN-NVKQWLN 104 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~-~~~~~~~ 104 (153)
-.+|+|.|.+.|..+- .+..|+.
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~ 125 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLS 125 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHH
Confidence 4889999999975543 3444433
No 292
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.31 E-value=6e-11 Score=83.58 Aligned_cols=141 Identities=16% Similarity=0.338 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC--CeEEEEEEEeCCCcccccccccccccCc----c
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFRTITSSYYRGA----H 82 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~----~ 82 (153)
-+|+|+|..++||||||.+|.+.+ ...+..+.++.+..+.-+ ..-.++.+|-+-|+..........+... -
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 579999999999999999999866 223333444444444322 2235777898888876666666555443 4
Q ss_pred EEEEEEECCChhhH-HHHHHHHHHHHHhcCC-------------------------------------------------
Q 031777 83 GIIIVYDVTDQESF-NNVKQWLNEIDRYASD------------------------------------------------- 112 (153)
Q Consensus 83 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------------------------- 112 (153)
.+||+.|++++..+ +.+..|...++.+...
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 78999999998443 5566666655433210
Q ss_pred ------------CCcEEEEEecCCCC----CCcc-------cCHHHHHHHHHHhcCceeeecCC
Q 031777 113 ------------NVNKLLVGNKCDLT----ANKV-------VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 113 ------------~~~~ilv~~K~D~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.|+++|.||+|.. .+-+ +.....++|+.+ .|...+.+|+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr-~GaaLiyTSv 272 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR-YGAALIYTSV 272 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH-cCceeEEeec
Confidence 58999999999982 2222 233446788888 7888887774
No 293
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.8e-11 Score=88.84 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=95.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--c-----------------------------CCCCcceeeeeEEEEEEEeeCCe
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADD--S-----------------------------YIESYISTIGVDFKIRTVEQDGK 55 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 55 (153)
..++++++|...+|||||+.+++.. . -.+++.. +.+.......++..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDVKTTWFESK 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEeeeEEEecC
Confidence 4689999999999999999988752 1 0111222 22333444445566
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH-------HHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-------VKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
...+.+.|.|||.+|..........+|+.++|+|++- ..|+. .+.....++... -..++++.||+|+.+.
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 6789999999999999999999999999999999874 23332 222222333333 2578999999999887
Q ss_pred cccCHHHHHHHHHHhc---------CceeeecCC
Q 031777 129 KVVSYETAKVYLLLYT---------GIFFFYPSP 153 (153)
Q Consensus 129 ~~~~~~~~~~~~~~~~---------~~~~~~~Sa 153 (153)
.+...++...-...|. .+.|+.||+
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSG 364 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISG 364 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEeccc
Confidence 6666665553332222 335777775
No 294
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=2.9e-10 Score=82.39 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCcccccc-
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFRT- 72 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~~- 72 (153)
++|.++|.+++|||||+|+|++.+......|..+.+.....+.+.+. ...+.+.|+||...-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999986633222233333333222222221 12589999999542111
Q ss_pred ---c---ccccccCccEEEEEEECC
Q 031777 73 ---I---TSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 73 ---~---~~~~~~~~~~~i~v~d~~ 91 (153)
+ .-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 112357899999999984
No 295
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.28 E-value=6.2e-11 Score=83.36 Aligned_cols=98 Identities=23% Similarity=0.216 Sum_probs=68.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-c------ccccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-F------RTITSSYYR 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~------~~~~~~~~~ 79 (153)
-..+++++|.|++|||||++.|++.+.....-++.+.+.-.-.+.+++ .++++.|+||.-. . ....-...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 447899999999999999999998665444445444444455556666 7899999998421 1 123445678
Q ss_pred CccEEEEEEECCChhh-HHHHHHHHHHH
Q 031777 80 GAHGIIIVYDVTDQES-FNNVKQWLNEI 106 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~ 106 (153)
++|++++|.|+....+ .+.+...+...
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~ 167 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDV 167 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhc
Confidence 9999999999996655 44444444333
No 296
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.28 E-value=5.3e-11 Score=95.84 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=73.1
Q ss_pred cHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeE----------------EEEEEEeCCCcccccccccccccCccE
Q 031777 20 GKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT----------------IKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 20 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+||||+.++.+.+.........+..+....+..+... -.+.+|||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999988766655555555554444433210 137899999999998888888889999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 84 IIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 84 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+++|+|+++ +.+++.+. .+.. .+.|+++++||+|+..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCcc
Confidence 999999986 44444332 2222 3579999999999964
No 297
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5.3e-11 Score=90.43 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=87.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce-----------------eeeeEEEEEEE---eeCCeEEEEEEE
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-----------------TIGVDFKIRTV---EQDGKTIKLQIW 62 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~ 62 (153)
++....+++.++|.-++|||+|+.-|.....+.-... .........+. ...++.+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 4456789999999999999999998876544322111 11111111111 234667899999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 63 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
|+|||.+|.......++.+|++++++|+.+.-++..- ..+++....+.|+.+|+||.|+.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHHH
Confidence 9999999999999999999999999999886665432 24455556679999999999973
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.3e-10 Score=83.22 Aligned_cols=122 Identities=21% Similarity=0.326 Sum_probs=81.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCccee-eeeEEEEEEEeeC------CeE-------------------
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST-IGVDFKIRTVEQD------GKT------------------- 56 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~------------------- 56 (153)
++.+.+..|+++|.-..||||||+.|+...++.-.... .+.+.....+..+ |..
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 56788899999999999999999999998887554422 1222222222221 110
Q ss_pred --------------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC
Q 031777 57 --------------IKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS 111 (153)
Q Consensus 57 --------------~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 111 (153)
-.+.+.|+||.-. |....+-+...+|.++++||....+--.+....+..++ +
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G 209 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---G 209 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---C
Confidence 1677999999432 33344446678999999999775444344444444444 4
Q ss_pred CCCcEEEEEecCCCCC
Q 031777 112 DNVNKLLVGNKCDLTA 127 (153)
Q Consensus 112 ~~~~~ilv~~K~D~~~ 127 (153)
..-.+-+|+||+|..+
T Consensus 210 ~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVD 225 (532)
T ss_pred CcceeEEEeccccccC
Confidence 4567999999999654
No 299
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.21 E-value=9.1e-11 Score=81.41 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=65.3
Q ss_pred ccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI 146 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~ 146 (153)
+++..+.+.+++++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+||.+++++..+.++.+. . .+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~-~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-N-IGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-H-CCC
Confidence 567777888999999999999999877 89999899876653 46899999999999766655555555554 4 678
Q ss_pred eeeecCC
Q 031777 147 FFFYPSP 153 (153)
Q Consensus 147 ~~~~~Sa 153 (153)
.++++||
T Consensus 99 ~v~~~SA 105 (245)
T TIGR00157 99 QVLMTSS 105 (245)
T ss_pred eEEEEec
Confidence 8999997
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=2.7e-10 Score=83.91 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEe---------------------eC-CeEEEEEEEeCCC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVE---------------------QD-GKTIKLQIWDTAG 66 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~d~~g 66 (153)
++|.++|.+++|||||+++|++........+..+.+...-... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998665432222222212211111 11 1236789999999
Q ss_pred ccc----cccccccc---ccCccEEEEEEECC
Q 031777 67 QER----FRTITSSY---YRGAHGIIIVYDVT 91 (153)
Q Consensus 67 ~~~----~~~~~~~~---~~~~~~~i~v~d~~ 91 (153)
... ...+-..+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22233344 78899999999997
No 301
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.18 E-value=4.6e-11 Score=72.89 Aligned_cols=122 Identities=20% Similarity=0.137 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----SSYYRGAHGII 85 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~~~~~~~~~i 85 (153)
|++++|..|+|||||.+.+.+...... .++..+ ++. -..+|+||.---+..+ ......+++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve-------~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVE-------FND----KGDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceee-------ccC----ccccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999998553222 222222 221 1257999854222222 22346789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|-+.+++++.-. +.+.... ..|+|=|.+|.|+.+ .-+.+..++|..+-..-++|++||
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~ 128 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSA 128 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEec
Confidence 9999999876421 1111211 356999999999986 344566677777746667888886
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.17 E-value=9.8e-10 Score=78.58 Aligned_cols=117 Identities=21% Similarity=0.381 Sum_probs=74.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC----------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-----
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----- 70 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----- 70 (153)
...++|+++|++|+|||||+|.|++.....+ ..++.........+.-++..+++.+.||||--++
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4568999999999999999999998643222 1234444455555556677889999999992111
Q ss_pred -------------c-------ccccc-cc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 71 -------------R-------TITSS-YY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 71 -------------~-------~~~~~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+ ...+. .+ ..+|++|+...++... +..+ -+..++...+ .+-+|-|..|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~--DIe~Mk~ls~-~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPL--DIEAMKRLSK-RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHH--HHHHHHHHhc-ccCeeeeeeccccC
Confidence 0 01111 11 3368999999877532 2222 2233444444 36789999999984
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.15 E-value=9.4e-10 Score=80.37 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=78.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC----cCC------------CCccee---eee--EE---EEEEEe-eCCeEEEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADD----SYI------------ESYIST---IGV--DF---KIRTVE-QDGKTIKL 59 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~----~~~------------~~~~~~---~~~--~~---~~~~~~-~~~~~~~~ 59 (153)
....+.|.|+|+.++|||||+++|.+. ... .+..+. .++ .+ ...++. .++...++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 445689999999999999999999986 222 111111 111 11 122222 23455789
Q ss_pred EEEeCCCcccc--------cc---------------------ccccccc-CccEEEEEE-ECC----ChhhHHHH-HHHH
Q 031777 60 QIWDTAGQERF--------RT---------------------ITSSYYR-GAHGIIIVY-DVT----DQESFNNV-KQWL 103 (153)
Q Consensus 60 ~~~d~~g~~~~--------~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~s~~~~-~~~~ 103 (153)
++.||+|-..- .. -.+..+. .+++.|+|. |.+ .++.+... ..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 99999993211 11 0223334 778888887 653 11222222 2344
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeec
Q 031777 104 NEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 104 ~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
..++. .++|+++|.||.|-..+ -..+.+.++.+. .+.+++.+
T Consensus 174 ~eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~ek-y~vpvl~v 215 (492)
T TIGR02836 174 EELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEK-YDVPVLAM 215 (492)
T ss_pred HHHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHH-hCCceEEE
Confidence 45544 47899999999993221 133334455444 44554443
No 304
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=6.8e-11 Score=88.11 Aligned_cols=139 Identities=22% Similarity=0.389 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+|+.|+|..++|||+|+++++.+.+.....|..+ -..+++..+++...+.+.|.+|.. ...|..++|++||+
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 47999999999999999999998888766554433 345667788888899999999843 24567789999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCC--CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTA--NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|.+.+..+|+.+....-.+.... ....|+++++++.-... .+.+..+++++++.+...+.||+++|
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~a 171 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCA 171 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecch
Confidence 99999999998876655554333 34588999999877644 34566777777777657777887764
No 305
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.14 E-value=2.1e-10 Score=79.10 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.....+-|+|+|..|||||||+++|..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHH
Confidence 345568899999999999999999975
No 306
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.12 E-value=7.7e-10 Score=81.71 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=52.1
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhh-------HHHHHHHHHHHHHhc----CCCCcEEEEEecCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRYA----SDNVNKLLVGNKCDL 125 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~----~~~~~~ilv~~K~D~ 125 (153)
..+.++|.+|+..-+..|.+++.+++++|||+++++... -..+..-+..+...+ -.+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 678999999999999999999999999999999875221 122333333333332 357999999999998
Q ss_pred C
Q 031777 126 T 126 (153)
Q Consensus 126 ~ 126 (153)
.
T Consensus 316 f 316 (389)
T PF00503_consen 316 F 316 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 307
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=6e-09 Score=71.30 Aligned_cols=97 Identities=22% Similarity=0.212 Sum_probs=64.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-------ccccccccC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-------TITSSYYRG 80 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~ 80 (153)
.-+|+++|.|.+|||||+..+...+.....-...+.++..-.+.+++ -++++.|.||.-.-. .......+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 47899999999999999999987543322223334445555566666 679999999953221 123445678
Q ss_pred ccEEEEEEECCChhhHH-HHHHHHHHH
Q 031777 81 AHGIIIVYDVTDQESFN-NVKQWLNEI 106 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~-~~~~~~~~~ 106 (153)
+|.++.+.|....+.-. .+...++.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 99999999998644333 233444444
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.11 E-value=1.4e-09 Score=75.04 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=43.0
Q ss_pred EEEEEEeCCCcccc-------------cccccccccCc-cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q 031777 57 IKLQIWDTAGQERF-------------RTITSSYYRGA-HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122 (153)
Q Consensus 57 ~~~~~~d~~g~~~~-------------~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K 122 (153)
..+.+.|+||-... ..+...|+++. +++++|+|....-+-.. .+...+...+.+.|+++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d---~l~ia~~ld~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD---ALKLAKEVDPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh---HHHHHHHHHHcCCcEEEEEEC
Confidence 47889999996421 22445566744 58888998764222111 122333333446899999999
Q ss_pred CCCCCC
Q 031777 123 CDLTAN 128 (153)
Q Consensus 123 ~D~~~~ 128 (153)
.|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.10 E-value=1.2e-10 Score=80.45 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=36.9
Q ss_pred EEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 58 KLQIWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 58 ~~~~~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.+.++|||||.++...+...- ...-++++++|..-..+-. .+..++-.+......+.|.+.|.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 788999999876644333322 3455888899876332221 123334444333344689999999999976
No 310
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.7e-09 Score=76.77 Aligned_cols=116 Identities=20% Similarity=0.309 Sum_probs=73.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC---------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------- 70 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------- 70 (153)
..++++++|.+|.|||||+|.|+...+... ...+..+......+.-+|..+++.+.||||--+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999987644322 1123343444444555677789999999991111
Q ss_pred ------------------ccccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 71 ------------------RTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 71 ------------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+.+.-+. .+|++++.+..+... +..+ -+..++.... .+.+|-|..|+|..
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~--Di~~Mk~l~~-~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPL--DIEFMKKLSK-KVNLIPVIAKADTL 171 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHh--hHHHHHHHhc-cccccceeeccccC
Confidence 111122222 579999999877532 2222 1223333333 47889999999984
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-09 Score=79.17 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=82.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CcCC--------------------CCcceeeeeEEEEEEEeeCCeEEEEEEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYI--------------------ESYISTIGVDFKIRTVEQDGKTIKLQIW 62 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (153)
..+....+|+..|.+|||||-++|+- +... -+....+.....+..+.+++ ..+.+.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLL 86 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLL 86 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEecc
Confidence 34567889999999999999998762 2110 01112234444555555555 789999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 63 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|||||++|..=.-+-+..+|..|.|+|... +++. ..+.-+.-++.||+-+.||.|...
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-------KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-------KLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-------HHHHHHhhcCCceEEEeecccccc
Confidence 999999999877778889999999999874 3332 344444457899999999999754
No 312
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.05 E-value=3.5e-10 Score=79.36 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=52.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCcccccc---
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFRT--- 72 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~~--- 72 (153)
+.++|.+++|||||+|+|++.+......|..+.+.....+.+.+. ...+.+.|+||...-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987654333344443333333333332 13589999999542211
Q ss_pred -c---ccccccCccEEEEEEECC
Q 031777 73 -I---TSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 73 -~---~~~~~~~~~~~i~v~d~~ 91 (153)
+ .-..++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 111246799999999874
No 313
>PRK13768 GTPase; Provisional
Probab=99.05 E-value=6.6e-10 Score=77.51 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=43.0
Q ss_pred EEEEEeCCCcccc---cccccccc---cC--ccEEEEEEECCChhhHHHHH--HHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 58 KLQIWDTAGQERF---RTITSSYY---RG--AHGIIIVYDVTDQESFNNVK--QWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 58 ~~~~~d~~g~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.+.+||+||+.+. +..+..++ .. .+++++++|.....+..... .|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6889999997653 22222222 22 78999999986543332221 222222211 23689999999999965
Q ss_pred C
Q 031777 128 N 128 (153)
Q Consensus 128 ~ 128 (153)
.
T Consensus 177 ~ 177 (253)
T PRK13768 177 E 177 (253)
T ss_pred c
Confidence 4
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.9e-08 Score=72.48 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC----------------CeEEEEEEEeCCCccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD----------------GKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~ 71 (153)
.+++.|+|.||+|||||+|+++........-|..+.+...-..... -....+.+.|..|...-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3789999999999999999999866443434555444433222211 113578899999843211
Q ss_pred -------ccccccccCccEEEEEEECC
Q 031777 72 -------TITSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 72 -------~~~~~~~~~~~~~i~v~d~~ 91 (153)
..--.-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 11112346789999999986
No 315
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.97 E-value=1e-08 Score=69.12 Aligned_cols=86 Identities=19% Similarity=0.127 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~ 136 (153)
....+.++.|..-.....+ .-.+.+|.|+|+.+...... ....++ ...=++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 3556777777421111111 12578999999886544221 111111 122389999999975323334444
Q ss_pred HHHHHH-hcCceeeecCC
Q 031777 137 KVYLLL-YTGIFFFYPSP 153 (153)
Q Consensus 137 ~~~~~~-~~~~~~~~~Sa 153 (153)
.+.++. .++.+++++||
T Consensus 161 ~~~~~~~~~~~~i~~~Sa 178 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNL 178 (199)
T ss_pred HHHHHHhCCCCCEEEEEC
Confidence 444443 36789999997
No 316
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.4e-08 Score=72.41 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC----cCCCCcc---eeeeeEEEEEEEe-------eCCeEEEEEEEeCCCccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD----SYIESYI---STIGVDFKIRTVE-------QDGKTIKLQIWDTAGQERFRTI 73 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~----~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~d~~g~~~~~~~ 73 (153)
.+++.++|.-.||||||.+++..- .+..++. ...+.+.....+. ..++.+++.+.|+|||...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 499999999999999999998752 2333322 2223333222222 2456789999999999877665
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
......-.|..++|+|+..-..-+..+.. .+-+. -....++|.||.|...+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~--~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGEL--LCKKLVVVINKIDVLPE 137 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhh--hhhhh--hccceEEEEeccccccc
Confidence 55556667999999998752222222221 11111 12467888888887543
No 317
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.8e-09 Score=76.09 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=90.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC---cCCCCcceeeeeEEEEEEE------------------ee--C----CeEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADD---SYIESYISTIGVDFKIRTV------------------EQ--D----GKTIKL 59 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~------------------~~--~----~~~~~~ 59 (153)
..++|..+|.-..|||||..+|.+- ++.++.....+....+... .+ . .--..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4699999999999999999999872 2222222222221111000 00 1 112578
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc--ccCHHHHH
Q 031777 60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYETAK 137 (153)
Q Consensus 60 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~--~~~~~~~~ 137 (153)
.+.|.|||+.+-...-....-.|+.++|++.+++.-.-+.+.-+-.+.-..- ..++++-||.|+.... .-..++.+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi--k~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI--KNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc--ceEEEEecccceecHHHHHHHHHHHH
Confidence 8999999987665555556667999999999976554444444444433322 4799999999996432 23345555
Q ss_pred HHHHH--hcCceeeecCC
Q 031777 138 VYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 138 ~~~~~--~~~~~~~~~Sa 153 (153)
+|.+- -.+.+.+.+||
T Consensus 167 ~FvkGt~Ae~aPIIPiSA 184 (415)
T COG5257 167 EFVKGTVAENAPIIPISA 184 (415)
T ss_pred HHhcccccCCCceeeehh
Confidence 66542 14557777776
No 318
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=2.8e-09 Score=67.97 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
+++++|.+|+|||||+|++.+...... ....+.+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 799999999999999999997654321 11122222333444443 5789999995
No 319
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.3e-08 Score=67.28 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=68.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC---------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc---cc--
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---RT-- 72 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~---~~-- 72 (153)
..++|.|+|.+|.|||||+|.+...+.... ...+.........+.-++..+++.+.||||--+. ..
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 468999999999999999999886543321 1112333333444455677789999999992111 01
Q ss_pred ---------------------ccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 73 ---------------------ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 73 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
.++..+. .+|.+++.+..+.. ++..+ -++.++...+ -+.++-|.-|+|-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrpl--DieflkrLt~-vvNvvPVIakaDt 196 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPL--DIEFLKRLTE-VVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcc--cHHHHHHHhh-hheeeeeEeeccc
Confidence 1111222 35788888877643 22222 1223333333 2567888999996
No 320
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.89 E-value=6.4e-09 Score=68.47 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=37.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
..++++++|.+|+|||||+|++.+... .....|..+ .....+..+. .+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcC
Confidence 347999999999999999999998553 222223332 2333333332 588999998
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-08 Score=69.38 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc---ccccccCccEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI---TSSYYRGAHGI 84 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~---~~~~~~~~~~~ 84 (153)
+.+|+++|...+|||++-.-+..+..+ +.+-....+.....-.+.+.-+++.+||.||+-.+..- ....++.+.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsP-neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCC-CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 467999999999999987666554422 22222111111111122334578999999998655331 24467899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEecCCCCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~ilv~~K~D~~~ 127 (153)
|||+|.-+. -.+.+......+... .+++..+-+..+|.|-..
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 999997653 223333333333322 246788999999999854
No 322
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.88 E-value=6.9e-09 Score=71.37 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=55.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh-------hHHHHHHHHHHHHHhcC----CCCcEEEEEecCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDL 125 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~ 125 (153)
++++++|.+|+.+-+..|.+++..+.++|||+.+++.. +-..++..+..++..+. ..+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 78999999999999999999999999999999988532 22334555555555543 45789999999998
Q ss_pred C
Q 031777 126 T 126 (153)
Q Consensus 126 ~ 126 (153)
.
T Consensus 282 l 282 (379)
T KOG0099|consen 282 L 282 (379)
T ss_pred H
Confidence 5
No 323
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=6.8e-09 Score=80.12 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC------------Ce----EEEEEEEeCCCccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD------------GK----TIKLQIWDTAGQERFR 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~~~d~~g~~~~~ 71 (153)
.+-|.|+|.-.+|||-|+..+.+.+.......+.+..+....+-.. +. ---+.++|||||+.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568899999999999999998866554444433332222222111 10 1247789999999999
Q ss_pred ccccccccCccEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVT---DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+.+....||.+|+|+|+- ++.+. +.++....++.|++|.+||+|..
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqti-------ESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-------ESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchh-------HHHHHHHhcCCCeEEeehhhhhh
Confidence 99999999999999999986 34443 33333344678999999999985
No 324
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.87 E-value=1.1e-08 Score=69.30 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|.++|+.|+|||||++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999875
No 325
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.1e-08 Score=66.39 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=35.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
..++++++|.+|+|||||+|+|.+.... ....+..+ .....+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999875432 22222222 2222232222 478999998
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=4.8e-08 Score=68.34 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=88.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc---Cc-------------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD---DS-------------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
...+||..+|.-..|||||.-++.. .. .+++.. .+.++...++.+...+..+-..|+|||.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~--rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKA--RGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhh--cCceeccceeEEecCCceEEeccCCChHH
Confidence 4569999999999999999887753 11 122222 34455556666666667888999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc---cCHHHHHHHHHH
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV---VSYETAKVYLLL 142 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~---~~~~~~~~~~~~ 142 (153)
|-..........|+.|+|++..+-..-+.-... .+.++..- ..++++.||+|+.+..+ .-..+.+++...
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--LlarqvGv-p~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQVGV-PYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhcCC-cEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 988888888889999999999873332221111 22222221 36888999999976432 223455666655
No 327
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.83 E-value=5.6e-08 Score=73.22 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=57.3
Q ss_pred EEEEEeCCCc-------------ccccccccccccCccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEecC
Q 031777 58 KLQIWDTAGQ-------------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKC 123 (153)
Q Consensus 58 ~~~~~d~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~ilv~~K~ 123 (153)
.+.+.|+||- +....+...++.+++++|+|+--- |.+.-+... +.+.++-+.+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 6778999992 334567788999999999998532 222222222 33445556678899999999
Q ss_pred CCCCCcccCHHHHHHHHH
Q 031777 124 DLTANKVVSYETAKVYLL 141 (153)
Q Consensus 124 D~~~~~~~~~~~~~~~~~ 141 (153)
|+.+....+.+..++...
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 998877777777776654
No 328
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.9e-08 Score=74.34 Aligned_cols=137 Identities=19% Similarity=0.250 Sum_probs=84.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
-+..+-++|+|++|+||||||+.|... +........ .-......++...+.++++|. +...+ ....+-+|.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i----~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEI----RGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhcc----CCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhhee
Confidence 344577889999999999999987641 111111111 111122456778999999993 34442 3356778999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH-----HHHHHHHHhcCceeeecC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE-----TAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~S 152 (153)
++++|.+---.++.+ .++..+..+.. ..++-|.|..|+......-.+ ..+-|.+-+.|+++|..|
T Consensus 138 lLlIdgnfGfEMETm-EFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 138 LLLIDGNFGFEMETM-EFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred EEEeccccCceehHH-HHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEec
Confidence 999998732111222 23334444433 358899999999764322211 134677778899988877
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=1.7e-08 Score=66.47 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
..++++++|.+|+|||||++++.+...... ....+.+.....+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 447899999999999999999998665321 1212223333334443 35789999994
No 330
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.80 E-value=2.2e-08 Score=64.89 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=37.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
...+++++|.+++|||||++++.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578899999999999999999964422 2223333333222233332 689999998
No 331
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.77 E-value=7.8e-09 Score=73.02 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc---------ccccccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ---------ERFRTITSSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~---------~~~~~~~~~~~ 78 (153)
..-|.|+|++|+|||||+++|+.....++..-.-+.+.+......+... .+.+.||-|- ..|+.. -...
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 3578999999999999999999766655555555555555555444433 6778899882 122222 2234
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEecCCCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN----KLLVGNKCDLT 126 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----~ilv~~K~D~~ 126 (153)
..+|.++-|.|++.|..-.+...-+..+++..-+..| ++=|=||.|..
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 6789999999999987766666667777666543333 45677788874
No 332
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.4e-08 Score=75.78 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC--------------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES--------------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
+++.....++.++..-..|||||+..|.......+ ...+-+.+...-.+.+-.+++.+.++|.|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 45566788999999999999999999875431111 0111222233333444445689999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
.+|.+....-..-+|+.++++|+.+--.-+ .+..+++.+-.+...++|.||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~q----t~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQ----TYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchh----HHHHHHHHHHccCceEEEEehhhh
Confidence 999999888888899999999987633322 234555555556788999999995
No 333
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=4.3e-08 Score=69.69 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=39.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
..++++++|.+|+|||||+|+|.+.+. .....|..+ .....+..+. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT--KAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE--EEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998654 222233332 2333344433 58899999964
No 334
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=2.2e-08 Score=66.95 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC---------CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSY---------IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
.+++++|.+|+|||||+|+|.+... .....| +++.....+..+. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcC
Confidence 5799999999999999999997432 112222 2333344444433 478999998
No 335
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.1e-07 Score=69.66 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc---CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
.|...|.-..|||||++.+.+.. .+++.....+.+......... +..+.+.|.||++++-......+...|..+|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 46677888899999999999743 333334445555554444333 3588999999999988877778888999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc---CHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++.++--..+..+. +..+..... ...++|.||+|+.++..+ ..+.....+ +.+.++|.+||
T Consensus 80 vV~~deGl~~qtgEh-L~iLdllgi--~~giivltk~D~~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~ 144 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDLLGI--KNGIIVLTKADRVDEARIEQKIKQILADLS--LANAKIFKTSA 144 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHhcCC--CceEEEEeccccccHHHHHHHHHHHHhhcc--ccccccccccc
Confidence 999975333332222 223332222 467999999998764311 111111112 35666677665
No 336
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=4.1e-08 Score=69.43 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=38.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
..++++++|.+|+|||||+|+|.+.... ....+..+ .....+..+. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999975532 22222222 2233344432 5789999997
No 337
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=3.8e-08 Score=70.92 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
.++++|+|.+++|||||||+|.+.... ...+..+.+-....+..+. .+.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 478999999999999999999986642 2222234444455555554 48899999964
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.64 E-value=3.9e-07 Score=65.79 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=38.1
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+.+.+.||+|...-.. .....+|.++++.+............ . .. ...-++|.||+|+.+.
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---g---i~--E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---G---IM--ELADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---h---hh--hhhheEEeehhcccch
Confidence 6888999999763222 14667999999976444333322221 0 11 1234899999998653
No 339
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.64 E-value=1e-07 Score=78.99 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=68.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCc----ce--eeeeEEEEEEEeeCCeEEEEEEEeCCCccc--------ccccccc
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESY----IS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FRTITSS 76 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~ 76 (153)
.+|+|++|+||||+++.- +..++-.. .. ..+.+.. -...... +-.++|++|... ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999976 33332211 00 0110000 1111222 456999999321 1223444
Q ss_pred cc---------cCccEEEEEEECCCh-----hh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 77 YY---------RGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 77 ~~---------~~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
++ +..+++|+++|+.+. +. -..++..+..+....+...|+.|++||+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 43 346999999998752 11 1345567777777777789999999999985
No 340
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.9e-07 Score=62.15 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=67.0
Q ss_pred eEEEEEcCCCC--cHHHHHHHHhcCcCCCCcceeeeeEE-----EEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 9 FKLLLIGDSGV--GKSCLLLRFADDSYIESYISTIGVDF-----KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
.-++|+|-+|+ ||.+++.+|....+..+..+...+++ ..+.+.. .+.+.+-.. .+.+.-.........
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysa---di~lcishi--cde~~lpn~~~a~pl 79 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSA---DINLCISHI--CDEKFLPNAEIAEPL 79 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeec---ceeEEeecc--cchhccCCcccccce
Confidence 45789999998 99999999998777655444433322 2222222 133333222 221211112223345
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
.+++.+||++....+..+..|+.--.-... -..+.++||.|..
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrv 122 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRV 122 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccc
Confidence 789999999999999888888763322111 2457789999874
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.7e-07 Score=69.16 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=71.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEE-----------------------------------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF----------------------------------------- 45 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (153)
...||++.|..++||||++|+++..+..++.....+.-+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 458999999999999999999987654333221110000
Q ss_pred ---EEEEEeeCCe----EEEEEEEeCCCcc---cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc
Q 031777 46 ---KIRTVEQDGK----TIKLQIWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN 115 (153)
Q Consensus 46 ---~~~~~~~~~~----~~~~~~~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 115 (153)
-.+.+..++. .=.+.+.|.||-+ ...+-...+...+|++|||.+..+..+..+. +.++.....+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek----~Ff~~vs~~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK----QFFHKVSEEKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH----HHHHHhhccCCc
Confidence 0011111110 0145678889854 3344455677889999999998875554332 333333333456
Q ss_pred EEEEEecCCCCCC
Q 031777 116 KLLVGNKCDLTAN 128 (153)
Q Consensus 116 ~ilv~~K~D~~~~ 128 (153)
++++-||+|....
T Consensus 264 iFIlnnkwDasas 276 (749)
T KOG0448|consen 264 IFILNNKWDASAS 276 (749)
T ss_pred EEEEechhhhhcc
Confidence 8888889998643
No 342
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.60 E-value=1.8e-06 Score=59.33 Aligned_cols=87 Identities=16% Similarity=0.012 Sum_probs=51.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--cCCCCcc-eeeeeEEEEEEEee-CCeEEEEEEEeCCCccccccc------cc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYI-STIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTI------TS 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~------~~ 75 (153)
....-|.|+|++++|||+|+|.|.+. .+..... ...+..+..-.... .+....+.++||+|....... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34678999999999999999999987 4432211 11111122111111 123468999999997644331 12
Q ss_pred ccccC--ccEEEEEEECCC
Q 031777 76 SYYRG--AHGIIIVYDVTD 92 (153)
Q Consensus 76 ~~~~~--~~~~i~v~d~~~ 92 (153)
..+.. ++.+|+..+.+.
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 22333 677777776653
No 343
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.60 E-value=1.7e-07 Score=60.74 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=36.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
....+++++|.+|+|||||+|.+.+... .....+..+... ..+... ..+.+.||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence 3457899999999999999999997542 212222222222 222232 3588999998
No 344
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.59 E-value=3.4e-07 Score=65.52 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
.+.+.+.||+|..... ...+..+|.++++.... +.+++......+ .+.|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccch
Confidence 3678899999854221 22456678888875433 323333222222 24678999999998653
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.57 E-value=3.2e-07 Score=66.85 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCcccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFRT 72 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~~ 72 (153)
+++.|+|.+++|||||++.|++... .....|..+.+.....+.+++. ...+.+.|.||...-.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 3332243333333223333321 13678999999543211
Q ss_pred -------cccccccCccEEEEEEECC
Q 031777 73 -------ITSSYYRGAHGIIIVYDVT 91 (153)
Q Consensus 73 -------~~~~~~~~~~~~i~v~d~~ 91 (153)
..-..++.+|+++.|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1222467899999999985
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.53 E-value=7.7e-08 Score=62.29 Aligned_cols=59 Identities=24% Similarity=0.197 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 70 (153)
-.++++|++|+|||||+|.|.+..... .......++....-+..+. ...+.|+||-..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 357899999999999999999753111 1111111111223333433 2468999996544
No 347
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.3e-08 Score=72.24 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCc--------CCCCcc--------eeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDS--------YIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
+......+|.|+..-.+||||.-++++.-. .....+ ...+.++.+..+..+.+...+.++|+||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 444556789999999999999999987522 111111 0124455566666677778999999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+.+|+-..+++++--|+++.|||.+---.-+.+. .|++..+.+.|-....||+|..
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtlt----vwrqadk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLT----VWRQADKFKIPAHCFINKMDKL 167 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceee----eehhccccCCchhhhhhhhhhh
Confidence 9999999999999999999999988533333333 3455556678999999999985
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.52 E-value=2.9e-07 Score=66.98 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=34.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCC-Ccce-----eeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIE-SYIS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
++++|.+|+|||||+|+|.+..... ...+ ...++....-+..++. ..++||||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 6899999999999999999743211 1111 1112222333334332 2499999975543
No 349
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.52 E-value=1.5e-06 Score=57.56 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=29.9
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHH-hcCceeeecCC
Q 031777 115 NKLLVGNKCDLTANKVVSYETAKVYLLL-YTGIFFFYPSP 153 (153)
Q Consensus 115 ~~ilv~~K~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 153 (153)
.=++|.||.|+...-..+.+...+-+++ .++.+++.+|+
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ 183 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNL 183 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeC
Confidence 3489999999988766777776666665 57888888874
No 350
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.47 E-value=2.3e-08 Score=67.77 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=54.9
Q ss_pred eCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcEEEEE
Q 031777 52 QDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNVNKLLVG 120 (153)
Q Consensus 52 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~~ilv~ 120 (153)
.+-+.+.+++.|.+|+..-+..|.+++.++-.++|++.+++ +...++....+..+-.. +..+.++|+.+
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 34455788899999999999999999999988888877653 22333333333333333 33678999999
Q ss_pred ecCCCCCC
Q 031777 121 NKCDLTAN 128 (153)
Q Consensus 121 ~K~D~~~~ 128 (153)
||.|+.++
T Consensus 274 NKkDlLEe 281 (359)
T KOG0085|consen 274 NKKDLLEE 281 (359)
T ss_pred chhhhhhh
Confidence 99999643
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.45 E-value=5e-07 Score=66.23 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC----CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE----SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
.+++++|.+|+|||||+|+|....... ...+..+++.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 489999999999999999999743211 1111122223333444432 357999999543
No 352
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.42 E-value=1.4e-06 Score=61.96 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=52.8
Q ss_pred cccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 75 SSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 75 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
...+.++|.+++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+..+ ......+... .+.+++.+||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~-~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALA-LGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHh-CCCeEEEEEC
Confidence 44588999999999999887 77777778776654 3589999999999965321 1122233334 6778888887
No 353
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=62.22 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=58.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC---------------eEEEEEEEeCCCcccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG---------------KTIKLQIWDTAGQERF 70 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~d~~g~~~~ 70 (153)
.+.+++.|+|.+++|||||+|.|+........-|..+++.....+.+.. .+..+.++|..|...-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3457999999999999999999998776666566666655544443321 1357889999984321
Q ss_pred c-------ccccccccCccEEEEEEECCC
Q 031777 71 R-------TITSSYYRGAHGIIIVYDVTD 92 (153)
Q Consensus 71 ~-------~~~~~~~~~~~~~i~v~d~~~ 92 (153)
. .---.-++.+|+++-|+++.+
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 111223567888888888753
No 354
>PRK12289 GTPase RsgA; Reviewed
Probab=98.41 E-value=6e-07 Score=65.41 Aligned_cols=21 Identities=48% Similarity=0.721 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031777 11 LLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (153)
++++|.+|+|||||||+|.+.
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCc
Confidence 789999999999999999964
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=98.40 E-value=5.1e-07 Score=66.28 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCC----cceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIES----YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
.+++++|.+|+|||||+|+|........ ..+..+++.....+..++ ...++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCc
Confidence 4789999999999999999985321111 111122233334444433 2479999995
No 356
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.40 E-value=6.9e-07 Score=62.15 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCC-cce-----eeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIES-YIS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
.++++|.+|+|||||+|+|.+...... ..+ ...++.....+...+ -.++||||-..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 578999999999999999997432111 111 111122223333333 26999999754
No 357
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.40 E-value=3.7e-07 Score=63.41 Aligned_cols=116 Identities=23% Similarity=0.201 Sum_probs=66.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce-eeeeEEEEEEEeeCCeEEEEEEEeCCCc----------cccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS-TIGVDFKIRTVEQDGKTIKLQIWDTAGQ----------ERFRTI 73 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~ 73 (153)
++..+.++++|-+++|||+|++-+...+....... ..+.+.....+... -.+.+.|.||. .++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 45669999999999999999998876443222111 22211222223232 47889999991 233344
Q ss_pred ccccccCcc---EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 74 TSSYYRGAH---GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 74 ~~~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
...|+.+-+ -+.+++|.+-+ ++.. -...+....+.+.|..+|+||+|...
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~--D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPT--DNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCC--ChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 455554433 22334444321 1110 12234444556899999999999853
No 358
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.39 E-value=1.5e-06 Score=61.50 Aligned_cols=40 Identities=20% Similarity=0.069 Sum_probs=26.8
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHH-hcCceeeecCC
Q 031777 114 VNKLLVGNKCDLTANKVVSYETAKVYLLL-YTGIFFFYPSP 153 (153)
Q Consensus 114 ~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 153 (153)
.+-++|+||+|+........++..+..+. .+..+++++||
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA 271 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISA 271 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 56799999999975333334444444433 46788999886
No 359
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.5e-06 Score=59.77 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=87.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc---C-------c------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD---D-------S------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~---~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 70 (153)
..+||.-+|.-..|||||--++.. . + .+++.. -++++...++.|......+-=.|+|||.+|
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEka--RGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKA--RGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhh--ccceEeeeeeeeeccccccccCCCCchHHH
Confidence 458999999999999999877643 1 1 122222 344556666666666667777899999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc---cCHHHHHHHHHH
Q 031777 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV---VSYETAKVYLLL 142 (153)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~---~~~~~~~~~~~~ 142 (153)
-..........|+.|+|++.+|-..-+ .+.-+-.-++..- ..+++..||.|+.++.+ .-+-|.+++..+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 888888888899999999999854432 2222223333332 46899999999974322 223355666655
No 360
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.34 E-value=7.1e-07 Score=66.65 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCc-CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
++.|.+||.+|+||||+||.|.+.+ .....+|..+..+.... +.. .+.|+|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC---CceecCCCCcc
Confidence 6999999999999999999999854 44444555554444333 332 57899999953
No 361
>PRK12289 GTPase RsgA; Reviewed
Probab=98.34 E-value=2.9e-06 Score=61.86 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=49.0
Q ss_pred cccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH---HHhcCcee
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYL---LLYTGIFF 148 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~---~~~~~~~~ 148 (153)
+.+..+.++|.+++|+|+.++. ....+..|+.... ..+.|+++|+||+||... ++.+.|. .. .+..+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~-----~~~~~~~~~~~~-~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSP-----TEQQQWQDRLQQ-WGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCCh-----HHHHHHHHHHHh-cCCeE
Confidence 3444688999999999998765 3334555655442 246899999999999542 2223333 34 57788
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+.+||
T Consensus 153 ~~iSA 157 (352)
T PRK12289 153 LFISV 157 (352)
T ss_pred EEEEc
Confidence 88886
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=98.32 E-value=3.1e-06 Score=60.55 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=49.7
Q ss_pred cccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+.++|.+++|+|+.++..... +..|+..+.. .+.|+++|+||+|+.+..+. .++..+..+. .+.+++.+||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~-~g~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRA-IGYDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHH-CCCeEEEEeC
Confidence 4589999999999988766544 4566665543 36899999999999633221 2223334444 5778899887
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.32 E-value=2.4e-06 Score=54.43 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=45.3
Q ss_pred ccccCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..++.+|++++|+|+.++.+.. .+..++. .. ..+.|+++|+||+|+.++.. .++..+..+. .+..++.+||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~-~~~~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVK---EV-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKK-EGIVVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hc-cCCCcEEEEEechhcCCHHH--HHHHHHHHHh-cCCeEEEEEe
Confidence 4567899999999998876543 2333332 22 24689999999999854322 1233333444 4567888876
No 364
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1e-06 Score=67.10 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=78.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc-----CCC-------------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS-----YIE-------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
...+|-+...-.+||||+-++++... ... +.....+.......+.+. ++++.++|||||.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence 45678888888999999999887521 111 111111222222333344 5899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+|.-...+-++--|+.+++.+....-.-+....|. +...-+.|.+...||+|...
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r----Q~~ry~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR----QMKRYNVPRICFINKMDRMG 170 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHH----HHHhcCCCeEEEEehhhhcC
Confidence 99988898899999999988876533323333443 33344789999999999854
No 365
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=1.5e-06 Score=61.41 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 70 (153)
-.+++|.+|+|||||+|+|.... ..+.......++....-+..++. =.+.||||-..+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 45799999999999999998622 22222222222333344445322 258899997543
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.29 E-value=2.5e-06 Score=55.48 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-+++.|..|+|||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998754
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.28 E-value=1.8e-06 Score=57.73 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=49.6
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH-----HH
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYL-----LL 142 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-----~~ 142 (153)
..+..++..+++.+|++++|+|+.++..- |...+... ..+.|+++|+||+|+... ....+....+. +.
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhh
Confidence 33577788899999999999999875421 22222222 235799999999999643 23334444443 22
Q ss_pred hcC---ceeeecCC
Q 031777 143 YTG---IFFFYPSP 153 (153)
Q Consensus 143 ~~~---~~~~~~Sa 153 (153)
.+ ..++.+||
T Consensus 95 -~~~~~~~i~~vSA 107 (190)
T cd01855 95 -LGLKPKDVILISA 107 (190)
T ss_pred -cCCCcccEEEEEC
Confidence 22 25788886
No 368
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=3.6e-06 Score=61.06 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=71.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC--------------CCcceee---------eeEEEEEEEeeC----------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI--------------ESYISTI---------GVDFKIRTVEQD---------- 53 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~---------~~~~~~~~~~~~---------- 53 (153)
..++++|+|...+|||||+--|..++.. .+..+.. +.+-.-.-+.+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3489999999999999999777654321 1111100 000000011111
Q ss_pred CeEEEEEEEeCCCcccccccccccccC--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 54 GKTIKLQIWDTAGQERFRTITSSYYRG--AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 54 ~~~~~~~~~d~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
...-.+.++|..|+..|.....+.+.. .|..+++++.+.-..+..- .-+..+.. -++|++++.+|+|+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEEeeccccc
Confidence 112367799999999888766665544 5888899988765444321 11222222 26899999999999754
No 369
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=5.8e-06 Score=57.76 Aligned_cols=114 Identities=23% Similarity=0.403 Sum_probs=68.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce----eeeeEEEEEEEeeCCeEEEEEEEeCCCc-------cccccc--
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS----TIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ERFRTI-- 73 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------~~~~~~-- 73 (153)
..++|+.+|.+|.|||||+..|.+..+...+.+ +...........-.+..+++.+.|+.|- +.+..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 468999999999999999999999777544332 2222222233333466788999999981 111110
Q ss_pred ----------------cccc--c--cCccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 74 ----------------TSSY--Y--RGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 74 ----------------~~~~--~--~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
.+.. + ..+|++++.+..+.. ++..+. ..+..+.. ...||-|+-|+|-
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds----kVNIIPvIAKaDt 188 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS----KVNIIPVIAKADT 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh----hhhhHHHHHHhhh
Confidence 0110 1 235788888887753 444332 12223322 3567777788885
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.22 E-value=8e-06 Score=59.55 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=50.9
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHHhcCceeeecCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..++|.+++|+++....++..+..|+.... ..+.|.++|+||+|+.+..+ ...++..+..+. .+.+++++||
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~---~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE---TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGYRVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCCeEEEEeC
Confidence 567999999999988888888888876553 23579999999999965321 111222222334 5778999987
No 371
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=4.1e-06 Score=59.64 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCc-ce-----eeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESY-IS-----TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
..++++|++|+|||||+|.|.+....... .+ ...++.....+...+ ...++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 46899999999999999999874432111 11 111122223333432 13589999986543
No 372
>PRK00098 GTPase RsgA; Reviewed
Probab=98.21 E-value=3.6e-06 Score=60.21 Aligned_cols=23 Identities=52% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|++|+|||||+|.|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998743
No 373
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.21 E-value=3.7e-05 Score=50.46 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeC-CCc---------------------
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDT-AGQ--------------------- 67 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~--------------------- 67 (153)
||+|.|++|+||||+++++...- .....+..+ +......-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987521 111112222 33344444555555566665 221
Q ss_pred -cccccccccc----ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 031777 68 -ERFRTITSSY----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123 (153)
Q Consensus 68 -~~~~~~~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~ 123 (153)
+.+...-... +..++ ++++|---+--+ ....|.+.+......+.|++.+..+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 1111111111 13445 666664322111 12235566666656678888888887
No 374
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.20 E-value=1.7e-06 Score=55.95 Aligned_cols=76 Identities=22% Similarity=0.214 Sum_probs=46.0
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeee
Q 031777 71 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFY 150 (153)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (153)
+.+.++.++++|++++|+|+.++...... .+...+ ...+.|+++|+||+|+.+.... +....+.+. .+.+++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~-~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV---LELGKKLLIVLNKADLVPKEVL--EKWKSIKES-EGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH---HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHh-CCCcEEE
Confidence 34567778889999999999875432221 122222 1235799999999998542211 111123333 4567788
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
+||
T Consensus 76 iSa 78 (156)
T cd01859 76 VSA 78 (156)
T ss_pred EEc
Confidence 886
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.14 E-value=9.3e-05 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
...+=+.|+||-.+||||||.||...
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHH
Confidence 33466899999999999999999763
No 376
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.13 E-value=7e-05 Score=48.36 Aligned_cols=113 Identities=23% Similarity=0.341 Sum_probs=63.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCC-Cccc----------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTA-GQER---------------- 69 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-g~~~---------------- 69 (153)
..++|.|.|++|+||||++.++.+.--...+ .. ..+...++.-++...-|.+.|+. |...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988752111111 11 12444555556666667777766 3110
Q ss_pred -----cc----ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 70 -----FR----TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 70 -----~~----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
++ ...+..++.+|++|+ |--.+-.+ ....+.+.+......+.|++.+.++.+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 11 111222233555544 43333222 1234556666666667888888887754
No 377
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.12 E-value=5.2e-06 Score=60.92 Aligned_cols=79 Identities=28% Similarity=0.339 Sum_probs=54.8
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHH----HHH
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY----LLL 142 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~----~~~ 142 (153)
.+.+..+...+.+.++++++|+|+.+.. ..|.+.+..... +.|+++|+||+|+.. +.+..++..+| ++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 4567778888888999999999987643 234455554443 579999999999965 33445555544 444
Q ss_pred hcCc---eeeecCC
Q 031777 143 YTGI---FFFYPSP 153 (153)
Q Consensus 143 ~~~~---~~~~~Sa 153 (153)
.++ .++.+||
T Consensus 123 -~g~~~~~i~~vSA 135 (360)
T TIGR03597 123 -LGLKPVDIILVSA 135 (360)
T ss_pred -cCCCcCcEEEecC
Confidence 454 4788887
No 378
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.3e-05 Score=60.33 Aligned_cols=127 Identities=19% Similarity=0.289 Sum_probs=80.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCc------------CCCCcce--eeeeEEEEEEEe----------------eCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS------------YIESYIS--TIGVDFKIRTVE----------------QDG 54 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~~~~~--~~~~~~~~~~~~----------------~~~ 54 (153)
+.+..++.|+..-..|||||-..|.... +...+.- .-+.++.+..+. .++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4457889999999999999998875422 1110000 001112111111 124
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CcccCH
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-NKVVSY 133 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~-~~~~~~ 133 (153)
..+.+.++|.|||.+|.+....-++-.|+.++|+|+-+--..+.-....+.+ ...+.-+++.||.|..= +-+.+.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~----~ERIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI----AERIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH----HhhccceEEeehhhHHHHhhcCCH
Confidence 4588999999999999999999999999999999987643333222233333 32355578999999742 234554
Q ss_pred HH
Q 031777 134 ET 135 (153)
Q Consensus 134 ~~ 135 (153)
|+
T Consensus 172 Ee 173 (842)
T KOG0469|consen 172 EE 173 (842)
T ss_pred HH
Confidence 44
No 379
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.09 E-value=6.1e-05 Score=54.42 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=45.2
Q ss_pred EEEEEEeCCCccccccccccccc--------CccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
....+.++.|-.....+...++. ..+++|.|+|..+-.... .......++ . ..=++|.||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi---~---~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV---G---YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH---H---hCCEEEEeccccCC
Confidence 45677888886554443333221 237899999976422211 111111222 1 23489999999875
Q ss_pred CcccCHHHHHHHHHH-hcCceeeec
Q 031777 128 NKVVSYETAKVYLLL-YTGIFFFYP 151 (153)
Q Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (153)
.. +..++..+. .+.++++++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTV 185 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEe
Confidence 32 344555443 355555554
No 380
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.05 E-value=3.6e-05 Score=56.15 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=71.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCC--------------CcceeeeeEEEEEEEeeCCe---------------
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE--------------SYISTIGVDFKIRTVEQDGK--------------- 55 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--------------- 55 (153)
.+..+.+.++|.-+.|||||+-.|.-++... +.......++...-+-+++.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4456889999999999999987775433211 11111222222222222221
Q ss_pred ------EEEEEEEeCCCccccccccc--ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 56 ------TIKLQIWDTAGQERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 56 ------~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.-+.+.|+.||+.+-.... .+-...|..++++..++--+-. .+.-+ -+. ...+.|++++.||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHL-gi~--~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHL-GIA--LAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhh-hhh--hhhcCCEEEEEEecccCc
Confidence 23577899999998754333 3446689999999988743311 11111 111 123589999999999965
Q ss_pred C
Q 031777 128 N 128 (153)
Q Consensus 128 ~ 128 (153)
.
T Consensus 270 d 270 (527)
T COG5258 270 D 270 (527)
T ss_pred H
Confidence 3
No 381
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=1.4e-05 Score=65.80 Aligned_cols=115 Identities=24% Similarity=0.228 Sum_probs=65.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCC--CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc--------ccccccc---
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYI--ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF--------RTITSSY--- 77 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~--------~~~~~~~--- 77 (153)
.+|+|++|+||||++..-- ..++ +..............+.+- -.-.-.++||.|.... ...|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcc-cccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 5799999999999986432 1111 1110000000001222111 1124568888883211 2233332
Q ss_pred ------ccCccEEEEEEECCCh-----hh----HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 78 ------YRGAHGIIIVYDVTDQ-----ES----FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 78 ------~~~~~~~i~v~d~~~~-----~s----~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.+..+++|++.|+.+. .. ...++.-++.++....-..|+.|++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2456999999998742 11 22345567777777777799999999999953
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.96 E-value=0.00019 Score=47.30 Aligned_cols=22 Identities=41% Similarity=0.774 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
++++++|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 383
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=3.2e-06 Score=59.78 Aligned_cols=147 Identities=12% Similarity=0.122 Sum_probs=84.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCc---CCCCcceeeeeEEEE---EEEeeC-------------------------
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS---YIESYISTIGVDFKI---RTVEQD------------------------- 53 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~---~~~~~~------------------------- 53 (153)
+.-.++|.-+|.--.||||++.++.+-+ |..+.....+....+ +.+..+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 3456899999999999999999887632 222222222221111 111111
Q ss_pred -Ce------EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 54 -GK------TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 54 -~~------~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+. -..+.+.|+|||+..-...-....-.|+.++++..++..-..+....+..+.-..- ..++++-||.|+.
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L--khiiilQNKiDli 192 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL--KHIIILQNKIDLI 192 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh--ceEEEEechhhhh
Confidence 11 13566899999987655444555566888888887753322222222333322211 4799999999997
Q ss_pred CCcc--cCHHHHHHHHHH--hcCceeeecCC
Q 031777 127 ANKV--VSYETAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 127 ~~~~--~~~~~~~~~~~~--~~~~~~~~~Sa 153 (153)
.+.+ -..++.++|.+- -.+.+.+.+||
T Consensus 193 ~e~~A~eq~e~I~kFi~~t~ae~aPiiPisA 223 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFIQGTVAEGAPIIPISA 223 (466)
T ss_pred hHHHHHHHHHHHHHHHhccccCCCceeeehh
Confidence 6543 223455666553 24557777776
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.95 E-value=5.8e-05 Score=56.40 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCcccccccccc----c--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 56 TIKLQIWDTAGQERFRTITSS----Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
.+.+.+.||+|........-. + ...++-++||.|..-... .......++.. -.+--+|.||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~---~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS---VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc---cCCcEEEEECccCC
Confidence 368899999996543221111 1 234678999999763211 11122233221 23678889999964
No 385
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=7.9e-05 Score=39.55 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=29.1
Q ss_pred ccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 031777 81 AHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (153)
Q Consensus 81 ~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D 124 (153)
.++++|++|++.. .+.++....+..++.... +.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 5799999999864 355666667888888775 589999999998
No 386
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.89 E-value=0.00011 Score=51.09 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-------cccccccccCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRGA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~ 81 (153)
-++-++|-+.+||||++..+.+...+...--..+...-.-...+++ -++++.|.||.-+- ........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4788999999999999999987321111000111111111122333 57999999994211 12234466789
Q ss_pred cEEEEEEECCChhhHHHH
Q 031777 82 HGIIIVYDVTDQESFNNV 99 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~ 99 (153)
+.+++|.|+..|-+-..+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999999887665443
No 387
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.89 E-value=8e-05 Score=47.34 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=63.2
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 031777 13 LIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 92 (153)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 92 (153)
.-|..|+|||++.-.+...- ........-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALAL-AKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 45678899999977665311 1111111111111 0111122678999999853 333456788999999999876
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 93 QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..++......++.+..... ..++.+|.|+.+..
T Consensus 78 ~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 PTSITDAYALIKKLAKQLR-VLNFRVVVNRAESP 110 (139)
T ss_pred hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCCH
Confidence 3455555555555544333 46788999999853
No 388
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.89 E-value=4.2e-05 Score=49.55 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=32.8
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.++.+|++++|+|..++..- ........+... ..+.|+++|+||+|+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVP 53 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCC
Confidence 46789999999999886322 112223333322 33589999999999954
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.88 E-value=0.00022 Score=51.52 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=69.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEE-----------------------EEEEeeC-------------C
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK-----------------------IRTVEQD-------------G 54 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-------------~ 54 (153)
.+|-|.=|||||||+++++.... .....-.-.++. ...++.. -
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC-CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 46889999999999999986442 111111111111 1111100 0
Q ss_pred eEEEEEEEeCCCccccccccccccc--------CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+...++++.|...-.+....+.. ..|++|-|+|+..-..... ..-+.+..+.. ..=+|++||.|+.
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~--~~~~~~~~Qia--~AD~ivlNK~Dlv 158 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLD--AIAELAEDQLA--FADVIVLNKTDLV 158 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHH--HHHHHHHHHHH--hCcEEEEecccCC
Confidence 0134557777775444332222221 2478899998764322211 11122222211 2448999999997
Q ss_pred CCcccCHHHHHHHHHH-hcCceeeecC
Q 031777 127 ANKVVSYETAKVYLLL-YTGIFFFYPS 152 (153)
Q Consensus 127 ~~~~~~~~~~~~~~~~-~~~~~~~~~S 152 (153)
+... .+..+++.+. .+..+++.+|
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~ 183 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETS 183 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcc
Confidence 7553 3444444443 4666677655
No 390
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=58.46 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=42.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
...+++.|+|.+++||||+||+|...+...- -+..+.+-....+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 4569999999999999999999997665322 22233334445555554 7899999994
No 391
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.84 E-value=1.9e-05 Score=42.83 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
..+|.|+.|+||||++.+++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998765
No 392
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.82 E-value=1.9e-05 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 393
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.81 E-value=0.00018 Score=43.58 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=60.9
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 11 LLLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 11 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
|+++| ..|+||||+...|...-.........-.+.. .... ..+.+.|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 44555 5569999988766531111101111111111 1111 17899999986533 23456788899999887
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEec
Q 031777 90 VTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNK 122 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~-~~~~ilv~~K 122 (153)
.+ ..+...+..+++.++....+ ..++.+|.|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 65 45667777777777765543 4567777774
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.81 E-value=0.00017 Score=47.42 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccccc----cccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
..+.+.|++|...... ....+. ...+.+++|++...... ...+...+....+ ...+|.||.|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCC
Confidence 5678899999743221 111111 24899999999864322 2233333333222 4677889999754
No 395
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.81 E-value=0.00017 Score=45.36 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
...++|.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999863
No 396
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.81 E-value=0.00011 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.--++++|++|+||||++..|..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35788999999999999988764
No 397
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=1.9e-05 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+|+|+|++|||||||...|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.80 E-value=1.8e-05 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
.+|+|+|++||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 399
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=2.1e-05 Score=51.78 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|+|+|++|||||||.+.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 400
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.74 E-value=0.00015 Score=51.60 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=66.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCc---------------
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQ--------------- 67 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--------------- 67 (153)
|......+++|+|++|-|||++++++....-. ...+. . ..+.+.....|..
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 45566788999999999999999999974422 11111 0 1123344444431
Q ss_pred ---------ccccccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCC
Q 031777 68 ---------ERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDL 125 (153)
Q Consensus 68 ---------~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~ 125 (153)
..........++...+-++++|--. ..+....+..+..++..++ -+.|++.+|++--.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH
Confidence 1112223356777888899998431 1233444556777776655 45899999986543
No 401
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.74 E-value=0.00011 Score=51.94 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=38.0
Q ss_pred EEEEEEeCCCccccccccc------------ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 031777 57 IKLQIWDTAGQERFRTITS------------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD 124 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D 124 (153)
+.+.+.||||........- .....+|.+++|+|... ..+.+.. ...+.... .+--+|.||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 6889999999754332211 11224789999999873 2222222 12222212 25689999999
Q ss_pred CCC
Q 031777 125 LTA 127 (153)
Q Consensus 125 ~~~ 127 (153)
...
T Consensus 229 e~~ 231 (272)
T TIGR00064 229 GTA 231 (272)
T ss_pred CCC
Confidence 753
No 402
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.73 E-value=2.9e-05 Score=49.31 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 403
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.72 E-value=3.8e-05 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++|+|++|||||||++-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999887644
No 404
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.72 E-value=0.00029 Score=42.28 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=49.6
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 11 LLLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 11 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
|.+.| ..|+||||+...+...- .....+..-.+. +.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~~d~-------d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLLIDL-------DPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEEEeC-------CCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 45799999988766421 111111221111 111 578999999875332 2366778999999987
Q ss_pred CCChhhHHHHHHHHH
Q 031777 90 VTDQESFNNVKQWLN 104 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~ 104 (153)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 65 456666655555
No 405
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.72 E-value=0.00055 Score=40.02 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=43.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEE
Q 031777 11 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYD 89 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~v~d 89 (153)
+++.|..|+||||+...+...-.... .... ..+ .+.+.|+++....... .......++.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 57889999999999988775211101 1111 111 6889999987533321 1445567889999888
Q ss_pred CCC
Q 031777 90 VTD 92 (153)
Q Consensus 90 ~~~ 92 (153)
...
T Consensus 68 ~~~ 70 (99)
T cd01983 68 PEA 70 (99)
T ss_pred Cch
Confidence 664
No 406
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.72 E-value=4.1e-05 Score=51.80 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~ 33 (153)
.++|+|++|||||||++.+-+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 478999999999999999887553
No 407
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.0005 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+||||++.+|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999875
No 408
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.65 E-value=4.8e-05 Score=47.95 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999988743
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=6.1e-05 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 031777 11 LLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (153)
+.|+|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998744
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0017 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999988764
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=8.2e-05 Score=52.80 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=37.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC----cceeeeeEEEEEE-EeeCCeEEEEEEEeCCCc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES----YISTIGVDFKIRT-VEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~g~ 67 (153)
..+++.|+|-||+|||||+|.+........ .-+-.+.+..+.. +.+... -.+.+.|+||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence 458999999999999999998875332111 1111222222222 333333 35889999994
No 412
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.61 E-value=0.00024 Score=45.92 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=28.8
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCC
Confidence 689999999887554322 2221 122234689999999999853
No 413
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.61 E-value=6.6e-05 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
+.+.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999885
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.61 E-value=0.0007 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999988743
No 415
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.60 E-value=7.8e-05 Score=49.30 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (153)
=.++|+|++|+|||||+|-+.+-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 468999999999999999887744
No 416
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.59 E-value=9.6e-05 Score=48.60 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=33.5
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
......++++|.+++|+|..++..-... .....+ .+.|+++|+||+|+.+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCC
Confidence 3445678899999999999875432211 112211 2468999999999854
No 417
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.59 E-value=0.00017 Score=52.67 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC------------------CCCcceeeeeEEEEEEEe------------------
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY------------------IESYISTIGVDFKIRTVE------------------ 51 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~------------------ 51 (153)
.++++|+|+-.+|||||+--|..++. ....+++.+.++--....
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 48999999999999999976655431 111222222221110000
Q ss_pred -eCCeEEEEEEEeCCCcccccccccccccC--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 52 -QDGKTIKLQIWDTAGQERFRTITSSYYRG--AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 52 -~~~~~~~~~~~d~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+..-.+.++|+.|++.|-......+.. .|...+++-.+-- -.-..+. -+.....-..|+++|.+|+|+-
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKE---HLgLALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKE---HLGLALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHH---hhhhhhhhcCcEEEEEEeeccC
Confidence 01112356789999999887766655543 4666666654421 0000011 0111112258999999999984
No 418
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.59 E-value=4.6e-05 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999853
No 419
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.59 E-value=0.00051 Score=51.65 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=36.7
Q ss_pred ccccccccCccEEEEEEE-CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 72 TITSSYYRGAHGIIIVYD-VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
++.+..+.+++.+|| | .+.--+..++...+..++.....+..++++-+|.+-
T Consensus 150 EIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 150 EILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred HHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 455666777887776 2 112235567777888888887788899999999764
No 420
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.57 E-value=7.4e-05 Score=47.59 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|.|+|++++|||||++.|.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 421
>PRK06217 hypothetical protein; Validated
Probab=97.53 E-value=8.3e-05 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+|+|+|.+||||||+.++|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999885
No 422
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.53 E-value=0.00012 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...-|+|.|++|||||||++.+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 423
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.52 E-value=0.00012 Score=48.22 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
|+.. ...-+.|+|++|||||||++++..
T Consensus 1 ~~~~--~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 1 MNKT--MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCCC--CceEEEEECCCCChHHHHHHHHHH
Confidence 4444 345689999999999999999885
No 424
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.49 E-value=0.0001 Score=46.77 Aligned_cols=20 Identities=55% Similarity=0.841 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
++|+|++|+|||||++.|..
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999986
No 425
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.49 E-value=0.00011 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-.++++|++|+||||+++.+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 478999999999999999998643
No 426
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.49 E-value=0.00011 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999653
No 427
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.48 E-value=9.7e-05 Score=48.83 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.46 E-value=0.00012 Score=44.34 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 031777 9 FKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (153)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357899999999999999876
No 429
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00012 Score=45.60 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999886
No 430
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.45 E-value=0.00013 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
-.++|+|++|||||||++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998863
No 431
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.44 E-value=0.00014 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++|+|+.|+|||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 432
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.00015 Score=52.60 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 031777 11 LLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (153)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998854
No 433
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.44 E-value=0.00013 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031777 11 LLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (153)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 434
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.44 E-value=0.00049 Score=43.37 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-+++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 435
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0001 Score=51.21 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=51.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC-eEEEEEEEeCCCccccccccccccc--Cc--
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYR--GA-- 81 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~--~~-- 81 (153)
....|++.|+.+ |||+|++......+.. .++...++++..-...+ ..--..+|+++|.........--+. +.
T Consensus 44 ~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNGG--KTTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCCc--eeEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 346788888654 5999999887654433 45555445433322222 2334569999998766554433222 21
Q ss_pred cEEEEEEECCChh
Q 031777 82 HGIIIVYDVTDQE 94 (153)
Q Consensus 82 ~~~i~v~d~~~~~ 94 (153)
=.+|++.|++++.
T Consensus 121 ~slIL~LDls~p~ 133 (363)
T KOG3929|consen 121 FSLILVLDLSKPN 133 (363)
T ss_pred hhheeeeecCChH
Confidence 3678899999864
No 436
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.41 E-value=0.00019 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|+|.|++|||||||.+.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998875
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.41 E-value=0.00018 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+...-++|+|++|+|||||++.|..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34456688999999999999999974
No 438
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00032 Score=51.59 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=72.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-------------------------------CCCCcceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (153)
...++++++|.-.+||||+-..++... -.+++....+.+.....+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte- 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE- 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence 346899999999999999865554311 011112122233333333333
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCC---hhhHHHHHHHHH--HHHHhcCCCCcEEEEEecCCCC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLN--EIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~--~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
...+.+.|.|||..|-......+..+|.-++|++.-. ..-|+.--+... .+..... -...+++.||+|-.
T Consensus 156 -~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddP 230 (501)
T KOG0459|consen 156 -NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDP 230 (501)
T ss_pred -ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCC
Confidence 3678999999999999888888899999999988632 222222211111 1211112 25789999999974
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.40 E-value=0.00014 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999863
No 440
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.40 E-value=0.00014 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|.|.|++|||||||++.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 441
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00014 Score=49.30 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++||+|+|||||++.+-.
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998764
No 442
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.39 E-value=0.00016 Score=49.32 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 443
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00018 Score=52.84 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-.++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 368999999999999999998743
No 444
>PRK14530 adenylate kinase; Provisional
Probab=97.38 E-value=0.00016 Score=49.28 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 445
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00016 Score=49.61 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|+|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999877
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.37 E-value=0.00016 Score=48.80 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
++|.|++||||||+++.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998775
No 447
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.37 E-value=0.00018 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 448
>PRK03839 putative kinase; Provisional
Probab=97.37 E-value=0.00017 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 449
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.00018 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..++++|+|.+|||||+|+-.++.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 450
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.36 E-value=0.00018 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 451
>PRK13796 GTPase YqeH; Provisional
Probab=97.36 E-value=0.0005 Score=50.71 Aligned_cols=76 Identities=26% Similarity=0.373 Sum_probs=45.9
Q ss_pred cccccccccccCcc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHH----HHHh
Q 031777 69 RFRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY----LLLY 143 (153)
Q Consensus 69 ~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~----~~~~ 143 (153)
++....... ...+ .+++|+|+.+.. ..|.+.+..... +.|+++|+||+|+.. +....++..+| ++.
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~- 128 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE- 128 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh-
Confidence 344433333 3444 899999987733 234555554443 579999999999964 33444555545 333
Q ss_pred cCc---eeeecCC
Q 031777 144 TGI---FFFYPSP 153 (153)
Q Consensus 144 ~~~---~~~~~Sa 153 (153)
.++ .++.+||
T Consensus 129 ~g~~~~~v~~vSA 141 (365)
T PRK13796 129 LGLRPVDVVLISA 141 (365)
T ss_pred cCCCcCcEEEEEC
Confidence 344 4677886
No 452
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.36 E-value=0.00018 Score=48.98 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 453
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.35 E-value=0.00019 Score=48.77 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 454
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.35 E-value=0.00034 Score=49.62 Aligned_cols=58 Identities=24% Similarity=0.127 Sum_probs=36.7
Q ss_pred CCCcc-cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 64 TAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.|||- .........++.+|++++|+|..++.+.... .....+ .+.|+++|.||+|+.+
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLAD 62 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCC
Confidence 35553 2223345577899999999999776443221 111122 2579999999999853
No 455
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00019 Score=49.55 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 456
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00017 Score=48.95 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 457
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.35 E-value=0.0002 Score=47.82 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 458
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0002 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 459
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0002 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.00018 Score=50.25 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
+.|+|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999987
No 461
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.0002 Score=48.68 Aligned_cols=22 Identities=45% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 462
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00018 Score=50.04 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-+.|+|+.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999998
No 463
>PRK01889 GTPase RsgA; Reviewed
Probab=97.34 E-value=0.001 Score=48.96 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=43.2
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
...++|.+++|+++..+-....+..++..... .+.+.++|+||+||.+... +..+.+.....+.+.+.+||
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa 179 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSA 179 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEEC
Confidence 36889999999999743343344444444433 3567789999999975311 12222222225667777775
No 464
>PRK07429 phosphoribulokinase; Provisional
Probab=97.34 E-value=0.00028 Score=51.22 Aligned_cols=30 Identities=40% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
|.......+-|.|.|++|||||||.+.+.+
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 445566779999999999999999998875
No 465
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.34 E-value=0.00019 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
..+|+|.|++|||||||++.|.+.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 478999999999999999999863
No 466
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.33 E-value=0.00021 Score=48.63 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 467
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.33 E-value=0.0002 Score=45.81 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999998743
No 468
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00017 Score=46.02 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+||+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4568999999999999999999875
No 469
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.33 E-value=0.00022 Score=48.22 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 470
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.33 E-value=0.00023 Score=45.06 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 471
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.33 E-value=0.00076 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-.++++||+|+||||-+-.|..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999998877654
No 472
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.32 E-value=0.00018 Score=49.34 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|.|.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67899999999999998875
No 473
>PRK08233 hypothetical protein; Provisional
Probab=97.32 E-value=0.0002 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-|+|.|.+|||||||.++|..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5678899999999999999875
No 474
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00022 Score=48.77 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.32 E-value=0.00021 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 476
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.31 E-value=0.00023 Score=48.38 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 477
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.31 E-value=0.00022 Score=48.77 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 478
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.31 E-value=0.00023 Score=48.67 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 479
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.31 E-value=0.0002 Score=47.55 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 031777 9 FKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (153)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999987
No 480
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00025 Score=46.91 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.+.|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 481
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.30 E-value=0.00024 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999743
No 482
>PRK14532 adenylate kinase; Provisional
Probab=97.29 E-value=0.00023 Score=47.42 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|+++|++||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 483
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.29 E-value=0.00044 Score=42.94 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--|++-|+-|+|||||++.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999998875
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.29 E-value=0.00025 Score=48.72 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998743
No 485
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.29 E-value=0.00024 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 486
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.29 E-value=0.00027 Score=46.13 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 487
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.28 E-value=0.00026 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 488
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.28 E-value=0.00025 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 489
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.28 E-value=0.00024 Score=49.05 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999874
No 490
>PRK10646 ADP-binding protein; Provisional
Probab=97.28 E-value=0.0015 Score=42.09 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-|++-|+-|+|||||++.+..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~ 50 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQ 50 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 491
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=0.00026 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998843
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.28 E-value=0.00026 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 493
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00026 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 494
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00026 Score=49.63 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998743
No 495
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
--|+|+|++|||||||++.|...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999998763
No 496
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00023 Score=47.09 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.-+++.||+|+||||+++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999754
No 497
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.27 E-value=0.00027 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999743
No 498
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.27 E-value=0.00038 Score=46.93 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988743
No 499
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.27 E-value=0.00032 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|+.|+|||||++.+.+..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998743
No 500
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.26 E-value=0.00026 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999874
Done!