Query 031777
Match_columns 153
No_of_seqs 104 out of 1465
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.1E-38 3.8E-43 216.0 15.8 146 7-153 12-157 (216)
2 2fu5_C RAS-related protein RAB 100.0 1.6E-35 5.3E-40 195.5 16.9 152 1-153 1-152 (183)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 3.1E-34 1.1E-38 192.7 20.4 152 1-153 1-152 (206)
4 2bme_A RAB4A, RAS-related prot 100.0 2.1E-34 7E-39 190.4 18.5 152 1-153 3-154 (186)
5 3tkl_A RAS-related protein RAB 100.0 3.9E-34 1.3E-38 190.5 19.6 152 1-153 9-160 (196)
6 3tw8_B RAS-related protein RAB 100.0 8.9E-34 3E-38 186.3 18.8 151 1-153 2-152 (181)
7 2ew1_A RAS-related protein RAB 100.0 5.4E-34 1.8E-38 191.3 17.8 150 3-153 21-170 (201)
8 2hup_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 191.3 17.0 150 3-153 24-174 (201)
9 1z0f_A RAB14, member RAS oncog 100.0 9.9E-34 3.4E-38 185.8 18.0 150 3-153 10-159 (179)
10 2gf9_A RAS-related protein RAB 100.0 3.2E-33 1.1E-37 185.5 19.8 150 3-153 17-166 (189)
11 1z08_A RAS-related protein RAB 100.0 1E-33 3.5E-38 184.4 17.0 148 5-153 3-150 (170)
12 2fg5_A RAB-22B, RAS-related pr 100.0 1.2E-33 4.2E-38 188.0 17.6 151 2-153 17-167 (192)
13 2a5j_A RAS-related protein RAB 100.0 1.5E-33 5.3E-38 187.3 18.0 150 3-153 16-165 (191)
14 2efe_B Small GTP-binding prote 100.0 4.4E-33 1.5E-37 183.2 19.8 149 4-153 8-156 (181)
15 1zbd_A Rabphilin-3A; G protein 100.0 4.8E-33 1.6E-37 186.4 19.8 150 3-153 3-152 (203)
16 1z0j_A RAB-22, RAS-related pro 100.0 5.1E-33 1.7E-37 181.0 19.3 148 5-153 3-150 (170)
17 1r2q_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 181.6 18.0 148 5-153 3-150 (170)
18 2il1_A RAB12; G-protein, GDP, 100.0 1.2E-33 4.2E-38 188.1 15.3 151 3-153 21-171 (192)
19 2g6b_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 181.2 19.7 149 4-153 6-155 (180)
20 3t5g_A GTP-binding protein RHE 100.0 1.5E-32 5.2E-37 180.8 20.2 146 6-153 4-150 (181)
21 3dz8_A RAS-related protein RAB 100.0 1.7E-34 5.8E-39 192.0 10.9 151 2-153 17-167 (191)
22 3kkq_A RAS-related protein M-R 100.0 5.2E-33 1.8E-37 183.3 17.9 150 2-153 12-162 (183)
23 2oil_A CATX-8, RAS-related pro 100.0 5.3E-33 1.8E-37 184.9 17.7 150 3-153 20-169 (193)
24 1ek0_A Protein (GTP-binding pr 100.0 7.9E-33 2.7E-37 180.0 18.1 145 8-153 3-150 (170)
25 2o52_A RAS-related protein RAB 100.0 2.6E-33 8.9E-38 187.6 16.1 149 4-153 21-169 (200)
26 1g16_A RAS-related protein SEC 100.0 5.5E-33 1.9E-37 180.9 17.1 145 7-153 2-146 (170)
27 2fn4_A P23, RAS-related protei 100.0 7.2E-33 2.5E-37 182.0 17.7 151 1-153 2-153 (181)
28 3cpj_B GTP-binding protein YPT 100.0 7E-33 2.4E-37 188.4 17.6 148 5-153 10-157 (223)
29 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.7E-32 9.2E-37 178.9 19.6 148 5-153 4-155 (177)
30 1ky3_A GTP-binding protein YPT 100.0 4.4E-33 1.5E-37 183.1 15.7 153 1-153 1-159 (182)
31 1gwn_A RHO-related GTP-binding 100.0 1.2E-32 4.1E-37 185.2 17.9 151 1-153 21-184 (205)
32 1z06_A RAS-related protein RAB 100.0 1.1E-32 3.6E-37 182.9 17.3 147 6-153 18-166 (189)
33 2y8e_A RAB-protein 6, GH09086P 100.0 1.3E-32 4.4E-37 180.5 17.3 147 6-153 12-158 (179)
34 1z2a_A RAS-related protein RAB 100.0 9.2E-33 3.1E-37 179.5 16.4 146 6-153 3-148 (168)
35 3bc1_A RAS-related protein RAB 100.0 1.4E-32 4.8E-37 182.4 17.6 150 3-153 6-166 (195)
36 1vg8_A RAS-related protein RAB 100.0 2.1E-32 7.1E-37 183.7 18.4 152 1-153 1-156 (207)
37 3c5c_A RAS-like protein 12; GD 100.0 1.1E-32 3.7E-37 182.8 16.8 146 5-153 18-166 (187)
38 3cbq_A GTP-binding protein REM 100.0 6.3E-33 2.2E-37 185.2 15.5 150 3-153 18-169 (195)
39 1x3s_A RAS-related protein RAB 100.0 3.9E-32 1.3E-36 180.6 18.4 151 1-153 8-159 (195)
40 3l0i_B RAS-related protein RAB 100.0 2.7E-34 9.2E-39 192.2 7.6 152 1-153 26-177 (199)
41 2p5s_A RAS and EF-hand domain 100.0 8.2E-33 2.8E-37 185.0 14.7 148 5-153 25-178 (199)
42 1m7b_A RND3/RHOE small GTP-bin 100.0 5.1E-32 1.7E-36 179.0 18.0 147 5-153 4-163 (184)
43 3q3j_B RHO-related GTP-binding 100.0 3.6E-32 1.2E-36 183.9 17.3 146 5-153 24-183 (214)
44 2hxs_A RAB-26, RAS-related pro 100.0 8.6E-33 2.9E-37 181.4 13.7 148 5-153 3-154 (178)
45 3q85_A GTP-binding protein REM 100.0 4.4E-32 1.5E-36 176.6 16.7 145 8-153 2-148 (169)
46 3cph_A RAS-related protein SEC 100.0 7.2E-32 2.5E-36 181.7 18.2 148 4-153 16-163 (213)
47 2f7s_A C25KG, RAS-related prot 100.0 1.6E-32 5.3E-37 185.7 14.0 150 3-153 20-180 (217)
48 3oes_A GTPase rhebl1; small GT 100.0 6.9E-32 2.4E-36 180.7 17.0 146 6-153 22-168 (201)
49 1c1y_A RAS-related protein RAP 100.0 6.9E-32 2.3E-36 175.2 16.4 145 8-153 3-148 (167)
50 3reg_A RHO-like small GTPase; 100.0 2.5E-31 8.7E-36 176.9 18.9 146 5-153 20-169 (194)
51 2yc2_C IFT27, small RAB-relate 100.0 2.7E-32 9.3E-37 183.0 13.3 147 6-153 18-172 (208)
52 2nzj_A GTP-binding protein REM 100.0 1.8E-31 6.2E-36 174.5 16.8 146 6-153 2-150 (175)
53 3clv_A RAB5 protein, putative; 100.0 3.6E-31 1.2E-35 176.9 18.4 145 5-153 4-185 (208)
54 3ihw_A Centg3; RAS, centaurin, 100.0 3.2E-31 1.1E-35 175.4 17.6 142 5-153 17-161 (184)
55 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-31 9.5E-36 174.3 17.0 141 6-153 5-150 (178)
56 2atx_A Small GTP binding prote 100.0 6.1E-31 2.1E-35 175.0 18.6 146 6-153 16-174 (194)
57 1kao_A RAP2A; GTP-binding prot 100.0 2.5E-31 8.4E-36 172.3 16.2 144 8-153 3-147 (167)
58 3q72_A GTP-binding protein RAD 100.0 4.5E-31 1.5E-35 171.4 17.2 143 8-153 2-145 (166)
59 1u8z_A RAS-related protein RAL 100.0 2.6E-31 8.8E-36 172.4 16.0 145 7-153 3-148 (168)
60 2bov_A RAla, RAS-related prote 100.0 4.7E-31 1.6E-35 176.8 17.1 147 5-153 11-158 (206)
61 2a9k_A RAS-related protein RAL 100.0 3.6E-31 1.2E-35 174.7 16.3 147 5-153 15-162 (187)
62 2g3y_A GTP-binding protein GEM 100.0 4.2E-31 1.4E-35 178.3 16.3 149 3-153 32-184 (211)
63 2j0v_A RAC-like GTP-binding pr 100.0 4.9E-31 1.7E-35 177.8 16.4 146 6-153 7-161 (212)
64 2atv_A RERG, RAS-like estrogen 100.0 4E-31 1.4E-35 176.3 15.7 145 6-153 26-171 (196)
65 2q3h_A RAS homolog gene family 100.0 1.3E-30 4.3E-35 174.4 17.9 147 5-153 17-176 (201)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.5E-30 5.2E-35 171.6 17.6 145 6-153 3-161 (186)
67 4djt_A GTP-binding nuclear pro 100.0 2.4E-31 8.2E-36 180.0 13.9 148 5-153 8-156 (218)
68 4dsu_A GTPase KRAS, isoform 2B 100.0 3.1E-30 1.1E-34 170.5 18.1 145 6-153 2-147 (189)
69 2erx_A GTP-binding protein DI- 100.0 9.5E-31 3.2E-35 170.4 15.4 145 7-153 2-148 (172)
70 2gco_A H9, RHO-related GTP-bin 100.0 3.8E-30 1.3E-34 172.3 18.5 145 6-153 23-181 (201)
71 2j1l_A RHO-related GTP-binding 100.0 1.9E-30 6.4E-35 175.4 16.9 145 6-153 32-190 (214)
72 4gzl_A RAS-related C3 botulinu 100.0 2.7E-30 9.1E-35 173.5 16.3 146 6-153 28-186 (204)
73 3con_A GTPase NRAS; structural 100.0 1.2E-29 4E-34 168.3 19.0 145 6-153 19-164 (190)
74 2fv8_A H6, RHO-related GTP-bin 100.0 9.1E-30 3.1E-34 171.2 18.2 146 6-153 23-181 (207)
75 2gf0_A GTP-binding protein DI- 100.0 5.5E-30 1.9E-34 170.8 16.2 145 6-153 6-152 (199)
76 2f9l_A RAB11B, member RAS onco 100.0 1.8E-29 6.2E-34 168.7 18.7 147 6-153 3-149 (199)
77 3bwd_D RAC-like GTP-binding pr 100.0 4.9E-31 1.7E-35 173.5 10.8 146 6-153 6-162 (182)
78 2ce2_X GTPase HRAS; signaling 100.0 1.3E-29 4.6E-34 163.9 17.4 143 8-153 3-146 (166)
79 3gj0_A GTP-binding nuclear pro 100.0 1.3E-30 4.4E-35 176.9 12.0 147 3-153 10-156 (221)
80 2cjw_A GTP-binding protein GEM 100.0 1.9E-29 6.6E-34 167.9 17.0 146 6-153 4-153 (192)
81 1oix_A RAS-related protein RAB 100.0 4.4E-29 1.5E-33 166.0 18.4 150 3-153 24-173 (191)
82 3t1o_A Gliding protein MGLA; G 100.0 3.3E-30 1.1E-34 171.5 12.0 146 3-153 9-173 (198)
83 4bas_A ADP-ribosylation factor 100.0 3.9E-29 1.3E-33 166.7 15.5 146 3-153 12-170 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.7E-28 5.7E-33 164.1 15.2 140 7-153 24-180 (198)
85 3llu_A RAS-related GTP-binding 100.0 3E-29 1E-33 167.3 10.9 148 3-153 15-179 (196)
86 1m2o_B GTP-binding protein SAR 100.0 5.3E-28 1.8E-32 160.6 16.8 140 7-153 22-173 (190)
87 2h57_A ADP-ribosylation factor 100.0 4.6E-28 1.6E-32 160.7 16.5 143 5-153 18-168 (190)
88 1upt_A ARL1, ADP-ribosylation 100.0 2.1E-28 7.2E-33 159.3 14.0 140 6-153 5-150 (171)
89 2zej_A Dardarin, leucine-rich 100.0 1.5E-29 5E-34 167.3 8.6 144 8-153 2-158 (184)
90 1r8s_A ADP-ribosylation factor 100.0 3.7E-29 1.3E-33 162.0 9.5 137 9-153 1-143 (164)
91 2b6h_A ADP-ribosylation factor 100.0 9.6E-29 3.3E-33 164.5 11.2 140 6-153 27-172 (192)
92 1ksh_A ARF-like protein 2; sma 100.0 1.3E-27 4.5E-32 157.9 16.5 141 6-153 16-161 (186)
93 2wkq_A NPH1-1, RAS-related C3 100.0 1E-27 3.4E-32 171.2 17.1 144 7-153 154-311 (332)
94 1zd9_A ADP-ribosylation factor 100.0 2.1E-28 7.1E-33 162.2 12.3 142 6-153 20-166 (188)
95 3r7w_A Gtpase1, GTP-binding pr 100.0 4.1E-28 1.4E-32 172.1 13.5 144 7-153 2-163 (307)
96 1zj6_A ADP-ribosylation factor 100.0 1E-27 3.5E-32 158.6 14.0 141 6-153 14-159 (187)
97 2h17_A ADP-ribosylation factor 100.0 1E-27 3.4E-32 158.0 13.7 143 4-153 17-164 (181)
98 2x77_A ADP-ribosylation factor 100.0 2.1E-28 7.1E-33 162.1 9.8 140 6-153 20-165 (189)
99 3th5_A RAS-related C3 botulinu 99.9 2.3E-30 7.9E-35 173.6 0.0 145 6-153 28-186 (204)
100 1fzq_A ADP-ribosylation factor 100.0 3E-27 1E-31 155.8 14.4 140 6-153 14-159 (181)
101 1moz_A ARL1, ADP-ribosylation 99.9 5.1E-28 1.8E-32 159.3 7.9 141 6-153 16-161 (183)
102 3c5h_A Glucocorticoid receptor 99.9 2.3E-28 7.9E-33 169.3 6.5 149 3-153 14-236 (255)
103 2fh5_B SR-beta, signal recogni 99.9 3.2E-27 1.1E-31 159.2 9.7 121 6-129 5-131 (214)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 1.6E-27 5.4E-32 168.8 7.4 138 10-153 1-156 (331)
105 2qu8_A Putative nucleolar GTP- 99.9 6.5E-26 2.2E-30 154.5 14.3 144 6-153 27-186 (228)
106 1nrj_B SR-beta, signal recogni 99.9 1.9E-27 6.4E-32 160.8 6.5 139 5-153 9-165 (218)
107 2lkc_A Translation initiation 99.9 5E-26 1.7E-30 149.0 13.1 140 5-153 5-152 (178)
108 2wji_A Ferrous iron transport 99.9 2.8E-26 9.5E-31 149.1 10.6 136 8-153 3-146 (165)
109 3o47_A ADP-ribosylation factor 99.9 5E-26 1.7E-30 162.7 9.4 140 7-153 164-308 (329)
110 3lvq_E ARF-GAP with SH3 domain 99.9 2.7E-25 9.2E-30 166.7 11.9 141 6-153 320-465 (497)
111 2wjg_A FEOB, ferrous iron tran 99.9 2E-25 6.8E-30 147.5 8.8 137 7-153 6-150 (188)
112 3dpu_A RAB family protein; roc 99.9 1.5E-25 5.1E-30 169.4 8.6 144 5-153 38-189 (535)
113 1svi_A GTP-binding protein YSX 99.9 5.4E-25 1.8E-29 146.2 9.9 141 5-153 20-176 (195)
114 3a1s_A Iron(II) transport prot 99.9 1.1E-24 3.9E-29 150.9 10.1 138 6-153 3-148 (258)
115 3iev_A GTP-binding protein ERA 99.9 1.2E-23 4E-28 149.3 14.7 146 3-153 5-163 (308)
116 2dyk_A GTP-binding protein; GT 99.9 2.2E-24 7.6E-29 139.0 9.5 133 9-153 2-143 (161)
117 2cxx_A Probable GTP-binding pr 99.9 4.9E-25 1.7E-29 145.7 6.4 135 9-153 2-165 (190)
118 2gj8_A MNME, tRNA modification 99.9 7.3E-25 2.5E-29 143.4 7.0 135 8-153 4-147 (172)
119 3iby_A Ferrous iron transport 99.9 1.1E-24 3.6E-29 150.9 6.6 135 9-153 2-148 (256)
120 3pqc_A Probable GTP-binding pr 99.9 7.5E-24 2.6E-28 140.4 9.3 139 5-153 20-175 (195)
121 3i8s_A Ferrous iron transport 99.9 3.3E-24 1.1E-28 149.9 7.8 136 8-153 3-150 (274)
122 3b1v_A Ferrous iron uptake tra 99.9 2E-24 6.8E-29 150.6 6.4 136 7-153 2-145 (272)
123 2ged_A SR-beta, signal recogni 99.9 1E-23 3.6E-28 139.8 8.0 116 6-130 46-173 (193)
124 3k53_A Ferrous iron transport 99.9 1.2E-23 4.1E-28 146.8 8.1 137 8-153 3-147 (271)
125 1wf3_A GTP-binding protein; GT 99.9 3.7E-22 1.3E-26 141.0 14.9 144 1-153 1-154 (301)
126 4dhe_A Probable GTP-binding pr 99.9 2.6E-23 8.9E-28 140.8 7.1 143 6-153 27-192 (223)
127 3gee_A MNME, tRNA modification 99.9 2.2E-22 7.5E-27 149.7 12.0 138 8-153 233-379 (476)
128 2e87_A Hypothetical protein PH 99.9 2.2E-21 7.4E-26 140.2 14.7 142 6-153 165-317 (357)
129 3lxx_A GTPase IMAP family memb 99.9 7.8E-22 2.7E-26 135.2 11.2 141 5-150 26-187 (239)
130 2hjg_A GTP-binding protein ENG 99.9 2.6E-22 8.9E-27 148.4 9.3 142 6-153 173-330 (436)
131 1cip_A Protein (guanine nucleo 99.9 9.4E-22 3.2E-26 141.4 11.9 105 47-153 185-325 (353)
132 3qq5_A Small GTP-binding prote 99.9 1.1E-22 3.9E-27 149.2 7.1 140 4-153 30-177 (423)
133 3def_A T7I23.11 protein; chlor 99.9 7.7E-21 2.6E-25 132.0 14.0 127 6-134 34-172 (262)
134 4dcu_A GTP-binding protein ENG 99.9 8.4E-22 2.9E-26 146.4 8.9 142 6-153 193-350 (456)
135 3ohm_A Guanine nucleotide-bind 99.9 2.4E-21 8.2E-26 137.7 10.1 105 46-153 158-299 (327)
136 3p26_A Elongation factor 1 alp 99.9 2.7E-21 9.4E-26 144.5 10.5 143 7-153 32-219 (483)
137 3t5d_A Septin-7; GTP-binding p 99.9 3.6E-21 1.2E-25 134.4 9.9 144 5-153 5-185 (274)
138 1lnz_A SPO0B-associated GTP-bi 99.8 1.3E-21 4.3E-26 140.3 7.3 140 9-153 159-311 (342)
139 2qag_A Septin-2, protein NEDD5 99.8 1.2E-21 4E-26 141.6 6.6 142 6-153 35-215 (361)
140 3j2k_7 ERF3, eukaryotic polype 99.8 1.3E-20 4.5E-25 139.3 11.8 146 6-153 15-206 (439)
141 1jny_A EF-1-alpha, elongation 99.8 2.4E-21 8.1E-26 143.2 7.5 144 7-153 5-194 (435)
142 1wb1_A Translation elongation 99.8 8.8E-21 3E-25 141.6 10.6 139 6-153 17-170 (482)
143 2xtp_A GTPase IMAP family memb 99.8 2.9E-20 1E-24 128.8 12.5 118 6-127 20-153 (260)
144 3sjy_A Translation initiation 99.8 4.4E-20 1.5E-24 135.3 13.8 148 3-153 3-173 (403)
145 1zun_B Sulfate adenylate trans 99.8 3.4E-20 1.2E-24 137.0 13.2 142 6-153 22-205 (434)
146 3cb4_D GTP-binding protein LEP 99.8 1.7E-20 5.7E-25 142.8 11.8 140 7-153 3-163 (599)
147 1xzp_A Probable tRNA modificat 99.8 4.5E-21 1.5E-25 142.9 8.3 134 8-153 243-386 (482)
148 2xtz_A Guanine nucleotide-bind 99.8 1.4E-20 4.9E-25 135.3 10.6 73 55-127 181-264 (354)
149 1zcb_A G alpha I/13; GTP-bindi 99.8 2.1E-20 7.1E-25 134.9 11.5 104 48-153 194-334 (362)
150 1s0u_A EIF-2-gamma, translatio 99.8 4.2E-20 1.4E-24 135.6 13.0 142 6-153 6-179 (408)
151 1ega_A Protein (GTP-binding pr 99.8 8E-20 2.7E-24 129.2 13.7 140 6-153 6-156 (301)
152 3lxw_A GTPase IMAP family memb 99.8 8.2E-20 2.8E-24 125.8 13.2 138 6-148 19-179 (247)
153 1r5b_A Eukaryotic peptide chai 99.8 7.5E-21 2.6E-25 141.5 8.5 146 6-153 41-233 (467)
154 1mky_A Probable GTP-binding pr 99.8 2.1E-20 7.3E-25 138.3 10.5 132 9-153 2-147 (439)
155 2ywe_A GTP-binding protein LEP 99.8 6E-20 2E-24 139.6 13.1 141 6-153 4-165 (600)
156 1h65_A Chloroplast outer envel 99.8 1.8E-19 6.1E-24 125.6 14.0 126 7-135 38-176 (270)
157 3izq_1 HBS1P, elongation facto 99.8 1.3E-20 4.3E-25 144.1 8.8 146 6-153 165-353 (611)
158 4fid_A G protein alpha subunit 99.8 9.1E-21 3.1E-25 135.2 7.5 93 48-142 154-272 (340)
159 1f60_A Elongation factor EEF1A 99.8 4.3E-21 1.5E-25 142.5 5.3 147 1-153 1-193 (458)
160 1kk1_A EIF2gamma; initiation o 99.8 7.1E-20 2.4E-24 134.4 11.7 143 5-153 7-181 (410)
161 2qtf_A Protein HFLX, GTP-bindi 99.8 1.5E-19 5.1E-24 130.7 12.9 141 10-153 181-335 (364)
162 3geh_A MNME, tRNA modification 99.8 1.3E-20 4.4E-25 139.8 6.3 133 8-153 224-365 (462)
163 1d2e_A Elongation factor TU (E 99.8 1.5E-19 5.1E-24 132.2 11.6 142 8-153 3-166 (397)
164 1azs_C GS-alpha; complex (lyas 99.8 4.2E-19 1.4E-23 129.2 13.3 78 49-128 211-299 (402)
165 2c78_A Elongation factor TU-A; 99.8 9E-20 3.1E-24 133.7 9.9 142 6-153 9-175 (405)
166 3izy_P Translation initiation 99.8 8.9E-22 3E-26 147.9 -1.3 142 7-153 3-149 (537)
167 2hjg_A GTP-binding protein ENG 99.8 2E-20 6.7E-25 138.4 4.1 134 8-153 3-146 (436)
168 1mky_A Probable GTP-binding pr 99.8 7.8E-19 2.7E-23 129.9 12.6 142 6-153 178-336 (439)
169 3t34_A Dynamin-related protein 99.8 3.2E-19 1.1E-23 128.9 8.3 143 7-153 33-242 (360)
170 3mca_A HBS1, elongation factor 99.8 1.7E-20 5.7E-25 143.0 1.7 142 6-153 175-364 (592)
171 2elf_A Protein translation elo 99.8 3.6E-19 1.2E-23 129.0 8.3 128 10-153 23-158 (370)
172 1zo1_I IF2, translation initia 99.8 1.3E-20 4.4E-25 140.6 0.0 139 6-153 2-148 (501)
173 1g7s_A Translation initiation 99.8 1.6E-18 5.5E-23 132.0 11.4 112 7-127 4-136 (594)
174 3tr5_A RF-3, peptide chain rel 99.8 3.7E-19 1.3E-23 134.0 7.4 116 6-127 11-148 (528)
175 4dcu_A GTP-binding protein ENG 99.8 1.7E-19 5.9E-24 134.0 4.6 116 7-127 22-145 (456)
176 3avx_A Elongation factor TS, e 99.8 4E-18 1.4E-22 136.2 11.4 144 6-153 294-459 (1289)
177 2aka_B Dynamin-1; fusion prote 99.8 2.1E-18 7.2E-23 121.5 7.8 144 6-153 24-234 (299)
178 1dar_A EF-G, elongation factor 99.7 2.4E-17 8.3E-22 127.7 13.6 121 2-128 6-144 (691)
179 1jwy_B Dynamin A GTPase domain 99.7 3.1E-18 1.1E-22 121.5 7.7 72 57-130 131-215 (315)
180 1pui_A ENGB, probable GTP-bind 99.7 6.8E-18 2.3E-22 113.1 8.5 138 7-153 25-180 (210)
181 2h5e_A Peptide chain release f 99.7 6E-17 2E-21 122.1 13.6 117 6-128 11-149 (529)
182 1wxq_A GTP-binding protein; st 99.7 3.6E-17 1.2E-21 119.4 11.2 85 9-93 1-114 (397)
183 1n0u_A EF-2, elongation factor 99.7 2.1E-17 7.1E-22 130.4 10.2 118 5-126 16-163 (842)
184 2qag_C Septin-7; cell cycle, c 99.7 4.5E-17 1.5E-21 119.4 10.6 142 7-153 30-208 (418)
185 2xex_A Elongation factor G; GT 99.7 4.7E-17 1.6E-21 126.1 10.9 118 5-128 7-142 (693)
186 2qnr_A Septin-2, protein NEDD5 99.7 1.5E-17 5.1E-22 117.5 6.1 143 6-153 16-196 (301)
187 2rdo_7 EF-G, elongation factor 99.7 4.2E-16 1.4E-20 121.0 14.4 121 4-128 6-149 (704)
188 2j69_A Bacterial dynamin-like 99.7 6.4E-17 2.2E-21 125.4 9.8 119 7-128 68-245 (695)
189 2dy1_A Elongation factor G; tr 99.7 1.1E-16 3.7E-21 123.7 9.6 116 5-126 6-139 (665)
190 1u0l_A Probable GTPase ENGC; p 99.7 2.2E-17 7.7E-22 116.7 4.7 120 23-153 32-154 (301)
191 2qpt_A EH domain-containing pr 99.7 2.5E-17 8.5E-22 124.7 5.2 121 5-128 62-233 (550)
192 1jal_A YCHF protein; nucleotid 99.7 4.1E-16 1.4E-20 112.2 11.2 84 9-92 3-108 (363)
193 1udx_A The GTP-binding protein 99.7 3.3E-16 1.1E-20 114.8 9.3 139 10-153 159-306 (416)
194 3vqt_A RF-3, peptide chain rel 99.6 3.2E-15 1.1E-19 113.1 10.7 117 5-127 28-166 (548)
195 2x2e_A Dynamin-1; nitration, h 99.6 1.3E-16 4.4E-21 115.1 1.4 119 7-129 30-213 (353)
196 2dby_A GTP-binding protein; GD 99.5 4.5E-14 1.5E-18 102.0 10.8 82 9-92 2-111 (368)
197 4fn5_A EF-G 1, elongation fact 99.5 3.2E-14 1.1E-18 110.7 10.1 118 6-127 11-151 (709)
198 4a9a_A Ribosome-interacting GT 99.5 3.1E-14 1.1E-18 103.0 8.2 133 7-142 71-219 (376)
199 2wsm_A Hydrogenase expression/ 99.5 1.2E-14 4E-19 98.1 5.2 136 7-153 29-195 (221)
200 2hf9_A Probable hydrogenase ni 99.5 3.8E-16 1.3E-20 105.8 -5.4 136 7-153 37-205 (226)
201 3j25_A Tetracycline resistance 99.4 1.6E-14 5.5E-19 111.2 -0.3 114 8-127 2-133 (638)
202 2ohf_A Protein OLA1, GTP-bindi 99.4 2.6E-13 8.9E-18 98.6 4.9 89 7-95 21-131 (396)
203 3p32_A Probable GTPase RV1496/ 99.4 2.2E-13 7.4E-18 98.3 3.7 86 57-153 172-265 (355)
204 2p67_A LAO/AO transport system 99.3 2.3E-12 7.9E-17 92.5 4.5 60 57-127 149-208 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.3 3.7E-11 1.3E-15 93.6 11.3 120 7-130 50-234 (772)
206 2yv5_A YJEQ protein; hydrolase 99.3 2.2E-11 7.4E-16 86.1 9.0 83 67-153 66-150 (302)
207 2www_A Methylmalonic aciduria 99.3 3.7E-11 1.3E-15 86.5 10.1 60 57-127 167-226 (349)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 7E-11 2.4E-15 86.0 11.5 85 8-92 20-127 (392)
209 1yrb_A ATP(GTP)binding protein 99.2 3.9E-11 1.3E-15 82.8 8.1 71 57-128 109-186 (262)
210 3sop_A Neuronal-specific septi 99.1 5.2E-10 1.8E-14 77.8 8.1 115 8-127 2-154 (270)
211 2qm8_A GTPase/ATPase; G protei 99.0 5.5E-11 1.9E-15 85.2 2.4 60 57-127 148-207 (337)
212 3h2y_A GTPase family protein; 99.0 7.4E-11 2.5E-15 85.4 1.9 113 9-128 161-288 (368)
213 2qag_B Septin-6, protein NEDD5 99.0 1.8E-09 6.3E-14 79.2 9.1 60 8-67 42-105 (427)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 9E-11 3.1E-15 85.0 1.9 112 9-129 163-290 (369)
215 3l82_B F-box only protein 4; T 98.8 3.4E-09 1.2E-13 70.5 4.7 87 64-153 109-204 (227)
216 1puj_A YLQF, conserved hypothe 98.7 1.8E-08 6E-13 70.5 5.0 58 6-68 118-176 (282)
217 3cnl_A YLQF, putative uncharac 98.7 8.7E-09 3E-13 71.3 2.5 57 9-69 100-156 (262)
218 2j37_W Signal recognition part 98.5 1.9E-07 6.4E-12 70.1 7.1 114 7-127 100-254 (504)
219 3l2o_B F-box only protein 4; s 98.5 1.1E-07 3.7E-12 66.3 5.1 87 64-153 194-289 (312)
220 3h2y_A GTPase family protein; 98.5 1.8E-07 6.2E-12 67.7 5.1 80 66-153 55-141 (368)
221 1f5n_A Interferon-induced guan 98.5 9.1E-08 3.1E-12 73.0 3.7 65 6-70 36-104 (592)
222 3szr_A Interferon-induced GTP- 98.4 6E-07 2.1E-11 69.0 6.8 24 9-32 46-69 (608)
223 1tq4_A IIGP1, interferon-induc 98.3 8E-07 2.7E-11 65.2 5.3 108 9-125 70-187 (413)
224 3ec1_A YQEH GTPase; atnos1, at 98.2 6.2E-07 2.1E-11 64.9 2.4 80 66-153 57-143 (369)
225 1puj_A YLQF, conserved hypothe 98.1 3E-06 1E-10 59.2 4.3 79 62-153 4-87 (282)
226 2v3c_C SRP54, signal recogniti 98.0 6.8E-06 2.3E-10 60.7 5.1 63 57-126 181-251 (432)
227 3dm5_A SRP54, signal recogniti 98.0 4.5E-05 1.5E-09 56.4 9.0 65 57-127 183-253 (443)
228 3q5d_A Atlastin-1; G protein, 98.0 6.7E-06 2.3E-10 60.9 4.5 24 7-30 66-89 (447)
229 1bif_A 6-phosphofructo-2-kinas 98.0 3.1E-07 1.1E-11 68.5 -2.6 101 7-109 38-148 (469)
230 1ye8_A Protein THEP1, hypothet 97.8 1.1E-05 3.7E-10 52.5 3.1 21 10-30 2-22 (178)
231 1knq_A Gluconate kinase; ALFA/ 97.8 1.8E-05 6.2E-10 50.9 3.5 30 1-30 1-30 (175)
232 1kgd_A CASK, peripheral plasma 97.8 1.5E-05 5.1E-10 51.8 2.9 21 10-30 7-27 (180)
233 1lvg_A Guanylate kinase, GMP k 97.7 1.7E-05 5.8E-10 52.4 2.9 21 10-30 6-26 (198)
234 1t9h_A YLOQ, probable GTPase E 97.7 8.8E-05 3E-09 52.3 6.5 78 72-153 78-158 (307)
235 3kl4_A SRP54, signal recogniti 97.7 8.9E-05 3E-09 54.7 6.2 64 57-126 180-251 (433)
236 3a00_A Guanylate kinase, GMP k 97.6 2.7E-05 9.1E-10 50.9 2.8 20 11-30 4-23 (186)
237 3tr0_A Guanylate kinase, GMP k 97.6 2.8E-05 9.6E-10 51.2 2.9 22 10-31 9-30 (205)
238 1znw_A Guanylate kinase, GMP k 97.6 2.9E-05 9.9E-10 51.5 2.9 21 10-30 22-42 (207)
239 1s96_A Guanylate kinase, GMP k 97.6 3.1E-05 1.1E-09 52.0 2.9 22 10-31 18-39 (219)
240 1zp6_A Hypothetical protein AT 97.6 3.3E-05 1.1E-09 50.4 3.0 23 9-31 10-32 (191)
241 1z6g_A Guanylate kinase; struc 97.6 3.2E-05 1.1E-09 51.8 2.9 21 10-30 25-45 (218)
242 3c8u_A Fructokinase; YP_612366 97.6 3.8E-05 1.3E-09 51.0 2.9 23 8-30 22-44 (208)
243 4gp7_A Metallophosphoesterase; 97.6 3.5E-05 1.2E-09 49.7 2.6 19 10-28 11-29 (171)
244 3tif_A Uncharacterized ABC tra 97.6 4E-05 1.4E-09 52.1 2.9 22 10-31 33-54 (235)
245 3ney_A 55 kDa erythrocyte memb 97.5 4.8E-05 1.6E-09 50.3 2.9 22 9-30 20-41 (197)
246 3asz_A Uridine kinase; cytidin 97.5 5.8E-05 2E-09 50.0 3.2 23 8-30 6-28 (211)
247 3tau_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 50.4 2.9 23 9-31 9-31 (208)
248 2pcj_A ABC transporter, lipopr 97.5 5.3E-05 1.8E-09 51.1 2.9 22 10-31 32-53 (224)
249 1htw_A HI0065; nucleotide-bind 97.5 5.7E-05 1.9E-09 48.2 2.9 22 10-31 35-56 (158)
250 3cnl_A YLQF, putative uncharac 97.5 4E-05 1.4E-09 52.9 2.1 76 64-153 4-82 (262)
251 1ex7_A Guanylate kinase; subst 97.5 6.4E-05 2.2E-09 49.2 3.0 20 11-30 4-23 (186)
252 2onk_A Molybdate/tungstate ABC 97.5 6.6E-05 2.3E-09 51.2 3.0 22 10-31 26-47 (240)
253 1sgw_A Putative ABC transporte 97.5 6.9E-05 2.4E-09 50.2 2.9 22 10-31 37-58 (214)
254 3gfo_A Cobalt import ATP-bindi 97.5 6.6E-05 2.3E-09 52.2 2.9 22 10-31 36-57 (275)
255 1b0u_A Histidine permease; ABC 97.5 6.7E-05 2.3E-09 51.8 2.9 22 10-31 34-55 (262)
256 2cbz_A Multidrug resistance-as 97.5 6.8E-05 2.3E-09 51.0 2.9 22 10-31 33-54 (237)
257 1kag_A SKI, shikimate kinase I 97.4 7.6E-05 2.6E-09 47.8 2.9 22 9-30 5-26 (173)
258 2eyu_A Twitching motility prot 97.4 7.2E-05 2.5E-09 51.6 2.9 21 10-30 27-47 (261)
259 3lw7_A Adenylate kinase relate 97.4 8.6E-05 2.9E-09 47.4 3.1 20 9-28 2-21 (179)
260 2j41_A Guanylate kinase; GMP, 97.4 7.4E-05 2.5E-09 49.2 2.9 23 9-31 7-29 (207)
261 4g1u_C Hemin import ATP-bindin 97.4 7.4E-05 2.5E-09 51.7 2.9 22 10-31 39-60 (266)
262 2bdt_A BH3686; alpha-beta prot 97.4 7.7E-05 2.6E-09 48.6 2.9 21 10-30 4-24 (189)
263 1mv5_A LMRA, multidrug resista 97.4 8.8E-05 3E-09 50.6 3.2 22 10-31 30-51 (243)
264 1g6h_A High-affinity branched- 97.4 7.7E-05 2.6E-09 51.3 2.9 22 10-31 35-56 (257)
265 2pze_A Cystic fibrosis transme 97.4 8.2E-05 2.8E-09 50.3 2.9 22 10-31 36-57 (229)
266 2qor_A Guanylate kinase; phosp 97.4 8.6E-05 2.9E-09 49.1 3.0 22 9-30 13-34 (204)
267 2olj_A Amino acid ABC transpor 97.4 8.2E-05 2.8E-09 51.4 2.9 22 10-31 52-73 (263)
268 2ff7_A Alpha-hemolysin translo 97.4 9E-05 3.1E-09 50.7 3.1 22 10-31 37-58 (247)
269 1ji0_A ABC transporter; ATP bi 97.4 8.5E-05 2.9E-09 50.6 2.9 22 10-31 34-55 (240)
270 1uf9_A TT1252 protein; P-loop, 97.4 0.00011 3.8E-09 48.2 3.4 31 1-31 1-31 (203)
271 1vpl_A ABC transporter, ATP-bi 97.4 8.8E-05 3E-09 51.0 2.9 22 10-31 43-64 (256)
272 2rcn_A Probable GTPase ENGC; Y 97.4 8.7E-05 3E-09 53.4 3.0 23 10-32 217-239 (358)
273 2qi9_C Vitamin B12 import ATP- 97.4 9.2E-05 3.2E-09 50.7 2.9 22 10-31 28-49 (249)
274 4eun_A Thermoresistant glucoki 97.4 9.4E-05 3.2E-09 48.8 2.9 22 9-30 30-51 (200)
275 2wwf_A Thymidilate kinase, put 97.4 0.00013 4.5E-09 48.2 3.6 24 7-30 9-32 (212)
276 2d2e_A SUFC protein; ABC-ATPas 97.4 9.4E-05 3.2E-09 50.7 3.0 22 10-31 31-52 (250)
277 2qt1_A Nicotinamide riboside k 97.4 0.00017 5.7E-09 47.7 4.1 28 4-31 17-44 (207)
278 3b85_A Phosphate starvation-in 97.4 7.4E-05 2.5E-09 49.8 2.4 22 10-31 24-45 (208)
279 2zu0_C Probable ATP-dependent 97.4 0.0001 3.4E-09 51.0 3.0 22 10-31 48-69 (267)
280 2ghi_A Transport protein; mult 97.4 0.00011 3.8E-09 50.6 3.1 22 10-31 48-69 (260)
281 2ixe_A Antigen peptide transpo 97.4 9.8E-05 3.4E-09 51.2 2.9 22 10-31 47-68 (271)
282 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.9E-09 46.8 3.0 21 10-30 3-23 (173)
283 2bbw_A Adenylate kinase 4, AK4 97.4 0.00012 4E-09 49.9 3.2 21 9-29 28-48 (246)
284 2i3b_A HCR-ntpase, human cance 97.4 9.7E-05 3.3E-09 48.5 2.7 21 10-30 3-23 (189)
285 2ihy_A ABC transporter, ATP-bi 97.4 0.00012 4E-09 51.0 3.2 22 10-31 49-70 (279)
286 1ly1_A Polynucleotide kinase; 97.4 0.00014 4.9E-09 46.7 3.4 22 9-30 3-24 (181)
287 2v9p_A Replication protein E1; 97.4 0.00011 3.8E-09 51.8 3.0 21 10-30 128-148 (305)
288 2nq2_C Hypothetical ABC transp 97.3 0.00011 3.7E-09 50.5 2.9 22 10-31 33-54 (253)
289 2yz2_A Putative ABC transporte 97.3 0.00011 3.8E-09 50.8 2.9 22 10-31 35-56 (266)
290 3fb4_A Adenylate kinase; psych 97.3 0.00013 4.5E-09 48.5 3.0 22 9-30 1-22 (216)
291 1np6_A Molybdopterin-guanine d 97.3 0.00013 4.5E-09 47.2 2.9 23 8-30 6-28 (174)
292 3aez_A Pantothenate kinase; tr 97.3 0.00012 4.1E-09 51.8 2.9 25 6-30 88-112 (312)
293 3uie_A Adenylyl-sulfate kinase 97.3 0.00013 4.4E-09 48.1 2.9 22 9-30 26-47 (200)
294 1y63_A LMAJ004144AAA protein; 97.3 0.00016 5.6E-09 47.0 3.3 24 7-30 9-32 (184)
295 3dl0_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 48.3 3.0 22 9-30 1-22 (216)
296 2pjz_A Hypothetical protein ST 97.3 0.00015 5.1E-09 50.1 3.2 23 10-32 32-54 (263)
297 3ec2_A DNA replication protein 97.3 0.00011 3.9E-09 47.4 2.5 22 9-30 39-60 (180)
298 3t61_A Gluconokinase; PSI-biol 97.3 0.00014 4.6E-09 48.0 2.9 22 9-30 19-40 (202)
299 2ehv_A Hypothetical protein PH 97.3 0.00014 4.7E-09 49.3 3.0 20 10-29 32-51 (251)
300 1qhx_A CPT, protein (chloramph 97.3 0.00015 5E-09 46.7 2.9 22 9-30 4-25 (178)
301 2if2_A Dephospho-COA kinase; a 97.3 0.00016 5.3E-09 47.7 3.1 22 9-30 2-23 (204)
302 1cke_A CK, MSSA, protein (cyti 97.3 0.00016 5.4E-09 48.4 3.1 22 9-30 6-27 (227)
303 4a74_A DNA repair and recombin 97.3 0.00014 4.7E-09 48.6 2.8 21 10-30 27-47 (231)
304 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.8E-09 50.7 3.3 23 10-32 171-193 (301)
305 3lnc_A Guanylate kinase, GMP k 97.3 8.5E-05 2.9E-09 50.1 1.7 21 10-30 29-50 (231)
306 1lw7_A Transcriptional regulat 97.3 0.00013 4.6E-09 52.5 2.8 23 8-30 170-192 (365)
307 2f1r_A Molybdopterin-guanine d 97.3 7.6E-05 2.6E-09 48.2 1.3 21 10-30 4-24 (171)
308 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6.1E-09 47.3 3.1 22 9-30 26-47 (199)
309 3jvv_A Twitching mobility prot 97.3 0.00015 5.1E-09 52.3 2.9 21 10-30 125-145 (356)
310 1t9h_A YLOQ, probable GTPase E 97.2 5.4E-05 1.9E-09 53.4 0.5 22 10-31 175-196 (307)
311 3nh6_A ATP-binding cassette SU 97.2 0.00012 4E-09 51.7 2.1 21 10-30 82-102 (306)
312 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00017 5.7E-09 52.0 2.9 23 10-32 32-54 (359)
313 1jjv_A Dephospho-COA kinase; P 97.2 0.00022 7.7E-09 47.0 3.4 22 9-30 3-24 (206)
314 1nks_A Adenylate kinase; therm 97.2 0.00022 7.6E-09 46.3 3.2 21 10-30 3-23 (194)
315 2bbs_A Cystic fibrosis transme 97.2 0.00019 6.5E-09 50.2 3.1 22 10-31 66-87 (290)
316 2jaq_A Deoxyguanosine kinase; 97.2 0.00021 7.1E-09 46.9 3.1 21 10-30 2-22 (205)
317 2yv5_A YJEQ protein; hydrolase 97.2 0.00018 6.2E-09 50.6 2.9 20 10-29 167-186 (302)
318 2jeo_A Uridine-cytidine kinase 97.2 0.00019 6.4E-09 48.9 2.9 22 9-30 26-47 (245)
319 2rhm_A Putative kinase; P-loop 97.2 0.00025 8.5E-09 46.1 3.3 23 8-30 5-27 (193)
320 2cdn_A Adenylate kinase; phosp 97.2 0.00026 8.8E-09 46.6 3.4 24 7-30 19-42 (201)
321 3iij_A Coilin-interacting nucl 97.2 0.00023 7.8E-09 46.0 3.1 23 8-30 11-33 (180)
322 1z47_A CYSA, putative ABC-tran 97.2 0.0002 6.9E-09 51.5 3.0 23 10-32 43-65 (355)
323 3tui_C Methionine import ATP-b 97.2 0.00021 7.1E-09 51.6 3.0 23 10-32 56-78 (366)
324 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00021 7.1E-09 51.0 3.0 22 10-31 173-194 (330)
325 1qf9_A UMP/CMP kinase, protein 97.2 0.00033 1.1E-08 45.4 3.8 28 1-30 1-28 (194)
326 3sr0_A Adenylate kinase; phosp 97.2 0.00025 8.6E-09 47.1 3.1 22 9-30 1-22 (206)
327 3tqc_A Pantothenate kinase; bi 97.2 0.00034 1.2E-08 49.7 3.9 25 6-30 90-114 (321)
328 3cm0_A Adenylate kinase; ATP-b 97.2 0.00031 1.1E-08 45.4 3.5 23 8-30 4-26 (186)
329 2gza_A Type IV secretion syste 97.2 0.00021 7.1E-09 51.6 2.8 22 10-31 177-198 (361)
330 3trf_A Shikimate kinase, SK; a 97.2 0.00026 8.8E-09 45.8 3.1 22 9-30 6-27 (185)
331 2yyz_A Sugar ABC transporter, 97.2 0.00022 7.5E-09 51.4 3.0 23 10-32 31-53 (359)
332 2it1_A 362AA long hypothetical 97.2 0.00023 7.9E-09 51.4 3.0 23 10-32 31-53 (362)
333 3rlf_A Maltose/maltodextrin im 97.2 0.00023 7.9E-09 51.7 3.0 23 10-32 31-53 (381)
334 1kht_A Adenylate kinase; phosp 97.2 0.00027 9.1E-09 45.8 3.1 22 9-30 4-25 (192)
335 2kjq_A DNAA-related protein; s 97.2 0.00017 6E-09 45.4 2.1 21 10-30 38-58 (149)
336 1e4v_A Adenylate kinase; trans 97.1 0.00026 8.7E-09 47.1 3.0 21 10-30 2-22 (214)
337 3co5_A Putative two-component 97.1 0.00066 2.3E-08 42.2 4.7 22 9-30 28-49 (143)
338 2ewv_A Twitching motility prot 97.1 0.00024 8.3E-09 51.4 3.0 21 10-30 138-158 (372)
339 1odf_A YGR205W, hypothetical 3 97.1 0.00035 1.2E-08 48.9 3.8 25 6-30 29-53 (290)
340 1g29_1 MALK, maltose transport 97.1 0.00024 8.3E-09 51.4 3.0 23 10-32 31-53 (372)
341 1v43_A Sugar-binding transport 97.1 0.00025 8.7E-09 51.3 3.0 22 10-31 39-60 (372)
342 1via_A Shikimate kinase; struc 97.1 0.00026 8.8E-09 45.5 2.7 21 10-30 6-26 (175)
343 3tlx_A Adenylate kinase 2; str 97.1 0.00035 1.2E-08 47.5 3.4 24 7-30 28-51 (243)
344 1p9r_A General secretion pathw 97.1 0.00025 8.6E-09 52.1 2.9 21 10-30 169-189 (418)
345 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.2E-08 45.1 3.1 23 8-30 4-26 (169)
346 1gvn_B Zeta; postsegregational 97.1 0.00039 1.3E-08 48.6 3.6 23 8-30 33-55 (287)
347 1aky_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 46.8 3.1 23 8-30 4-26 (220)
348 2x8a_A Nuclear valosin-contain 97.1 0.00028 9.7E-09 48.9 2.8 21 10-30 46-66 (274)
349 2plr_A DTMP kinase, probable t 97.1 0.00037 1.3E-08 45.9 3.3 22 9-30 5-26 (213)
350 1tev_A UMP-CMP kinase; ploop, 97.1 0.00038 1.3E-08 45.2 3.3 22 9-30 4-25 (196)
351 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 44.4 3.1 21 10-30 2-22 (168)
352 1sq5_A Pantothenate kinase; P- 97.1 0.00041 1.4E-08 48.9 3.6 23 8-30 80-102 (308)
353 1rj9_A FTSY, signal recognitio 97.1 0.00029 9.9E-09 49.7 2.9 22 9-30 103-124 (304)
354 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 48.2 2.9 21 10-30 3-23 (253)
355 2oap_1 GSPE-2, type II secreti 97.1 0.0003 1E-08 53.1 3.0 21 10-30 262-282 (511)
356 1ixz_A ATP-dependent metallopr 97.1 0.00032 1.1E-08 47.9 2.9 21 10-30 51-71 (254)
357 3d31_A Sulfate/molybdate ABC t 97.1 0.00021 7.1E-09 51.3 2.0 23 10-32 28-50 (348)
358 1jbk_A CLPB protein; beta barr 97.1 0.00038 1.3E-08 44.8 3.1 22 9-30 44-65 (195)
359 1zd8_A GTP:AMP phosphotransfer 97.1 0.00036 1.2E-08 46.8 3.0 23 8-30 7-29 (227)
360 3gd7_A Fusion complex of cysti 97.0 0.00033 1.1E-08 51.0 2.9 22 10-31 49-70 (390)
361 3umf_A Adenylate kinase; rossm 97.0 0.00045 1.5E-08 46.3 3.4 20 11-30 32-51 (217)
362 1rz3_A Hypothetical protein rb 97.0 0.00049 1.7E-08 45.4 3.5 23 8-30 22-44 (201)
363 3b9q_A Chloroplast SRP recepto 97.0 0.00035 1.2E-08 49.2 2.9 22 9-30 101-122 (302)
364 3kta_A Chromosome segregation 97.0 0.00037 1.3E-08 45.0 2.9 21 10-30 28-48 (182)
365 1zak_A Adenylate kinase; ATP:A 97.0 0.00033 1.1E-08 46.8 2.6 23 8-30 5-27 (222)
366 2p5t_B PEZT; postsegregational 97.0 0.00033 1.1E-08 47.9 2.6 25 6-30 30-54 (253)
367 4e22_A Cytidylate kinase; P-lo 97.0 0.00043 1.5E-08 47.3 3.1 21 9-29 28-48 (252)
368 1ukz_A Uridylate kinase; trans 97.0 0.00053 1.8E-08 45.0 3.4 23 8-30 15-37 (203)
369 2xb4_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 46.4 3.1 21 10-30 2-22 (223)
370 1gtv_A TMK, thymidylate kinase 97.0 0.00015 5.1E-09 48.0 0.7 21 10-30 2-22 (214)
371 1nij_A Hypothetical protein YJ 97.0 0.00032 1.1E-08 49.7 2.3 24 8-31 4-27 (318)
372 1uj2_A Uridine-cytidine kinase 97.0 0.00051 1.8E-08 46.9 3.3 24 7-30 21-44 (252)
373 1oxx_K GLCV, glucose, ABC tran 97.0 0.0002 6.9E-09 51.5 1.3 23 10-32 33-55 (353)
374 3e70_C DPA, signal recognition 97.0 0.00043 1.5E-08 49.3 2.9 23 8-30 129-151 (328)
375 2vp4_A Deoxynucleoside kinase; 97.0 0.00035 1.2E-08 47.1 2.3 24 8-31 20-43 (230)
376 2v54_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 45.0 3.1 22 9-30 5-26 (204)
377 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00045 1.6E-08 46.1 2.9 21 10-30 25-45 (235)
378 2pbr_A DTMP kinase, thymidylat 97.0 0.00052 1.8E-08 44.5 3.0 21 10-30 2-22 (195)
379 1iy2_A ATP-dependent metallopr 97.0 0.00047 1.6E-08 47.7 2.9 21 10-30 75-95 (278)
380 1in4_A RUVB, holliday junction 96.9 0.0004 1.4E-08 49.4 2.7 22 9-30 52-73 (334)
381 2c95_A Adenylate kinase 1; tra 96.9 0.0005 1.7E-08 44.7 2.9 22 9-30 10-31 (196)
382 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00059 2E-08 46.9 3.3 22 9-30 5-26 (260)
383 3be4_A Adenylate kinase; malar 96.9 0.00055 1.9E-08 45.6 3.0 23 8-30 5-27 (217)
384 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.00044 1.5E-08 51.5 2.8 23 9-31 139-161 (460)
385 2z0h_A DTMP kinase, thymidylat 96.9 0.00051 1.8E-08 44.7 2.8 21 10-30 2-22 (197)
386 2yvu_A Probable adenylyl-sulfa 96.9 0.00083 2.8E-08 43.5 3.8 23 8-30 13-35 (186)
387 1e6c_A Shikimate kinase; phosp 96.9 0.00055 1.9E-08 43.7 2.9 21 10-30 4-24 (173)
388 2vli_A Antibiotic resistance p 96.9 0.00038 1.3E-08 44.9 2.1 23 8-30 5-27 (183)
389 2bwj_A Adenylate kinase 5; pho 96.9 0.00058 2E-08 44.6 3.0 22 9-30 13-34 (199)
390 1nn5_A Similar to deoxythymidy 96.9 0.0006 2.1E-08 45.0 3.1 23 8-30 9-31 (215)
391 1ak2_A Adenylate kinase isoenz 96.9 0.00063 2.2E-08 45.8 3.2 23 8-30 16-38 (233)
392 1vht_A Dephospho-COA kinase; s 96.9 0.00072 2.5E-08 45.0 3.4 23 8-30 4-26 (218)
393 3r20_A Cytidylate kinase; stru 96.9 0.00062 2.1E-08 46.1 3.1 22 8-29 9-30 (233)
394 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0034 1.2E-07 46.5 7.1 66 6-71 65-154 (457)
395 2iyv_A Shikimate kinase, SK; t 96.9 0.0006 2.1E-08 44.1 2.8 21 10-30 4-24 (184)
396 1zuh_A Shikimate kinase; alpha 96.9 0.00072 2.5E-08 43.0 3.1 22 9-30 8-29 (168)
397 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.0007 2.4E-08 42.6 3.0 19 11-29 26-44 (149)
398 2pez_A Bifunctional 3'-phospho 96.9 0.00065 2.2E-08 43.8 2.9 22 9-30 6-27 (179)
399 2og2_A Putative signal recogni 96.9 0.00059 2E-08 49.2 2.9 22 9-30 158-179 (359)
400 2p65_A Hypothetical protein PF 96.8 0.00049 1.7E-08 44.1 2.2 23 8-30 43-65 (187)
401 2obl_A ESCN; ATPase, hydrolase 96.8 0.00068 2.3E-08 48.7 3.1 23 10-32 73-95 (347)
402 3bos_A Putative DNA replicatio 96.8 0.00072 2.5E-08 45.2 3.1 23 8-30 52-74 (242)
403 1cr0_A DNA primase/helicase; R 96.8 0.00061 2.1E-08 47.5 2.8 21 10-30 37-57 (296)
404 2yhs_A FTSY, cell division pro 96.8 0.00063 2.2E-08 51.0 2.9 22 9-30 294-315 (503)
405 1lv7_A FTSH; alpha/beta domain 96.8 0.00076 2.6E-08 46.0 3.1 22 9-30 46-67 (257)
406 3uc9_A Increased recombination 96.8 0.00057 1.9E-08 46.1 2.3 23 10-32 29-53 (233)
407 2cvh_A DNA repair and recombin 96.8 0.00073 2.5E-08 44.8 2.9 21 10-30 22-42 (220)
408 2f6r_A COA synthase, bifunctio 96.8 0.001 3.6E-08 46.2 3.7 23 7-29 74-96 (281)
409 2w58_A DNAI, primosome compone 96.8 0.00084 2.9E-08 44.0 3.1 22 9-30 55-76 (202)
410 1n0w_A DNA repair protein RAD5 96.8 0.00076 2.6E-08 45.4 2.9 21 10-30 26-46 (243)
411 3b60_A Lipid A export ATP-bind 96.8 0.00079 2.7E-08 51.5 3.1 22 10-31 371-392 (582)
412 2rcn_A Probable GTPase ENGC; Y 96.8 0.0056 1.9E-07 44.1 7.3 71 77-153 127-200 (358)
413 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00088 3E-08 50.9 3.2 22 10-31 49-70 (538)
414 1m7g_A Adenylylsulfate kinase; 96.7 0.00089 3E-08 44.4 2.9 22 9-30 26-47 (211)
415 3euj_A Chromosome partition pr 96.7 0.00082 2.8E-08 50.3 2.9 21 10-30 31-51 (483)
416 3nwj_A ATSK2; P loop, shikimat 96.7 0.00082 2.8E-08 46.0 2.7 22 9-30 49-70 (250)
417 3b5x_A Lipid A export ATP-bind 96.7 0.00092 3.1E-08 51.2 3.1 22 10-31 371-392 (582)
418 1c9k_A COBU, adenosylcobinamid 96.7 0.001 3.6E-08 43.2 2.9 21 11-31 2-22 (180)
419 1ltq_A Polynucleotide kinase; 96.7 0.00094 3.2E-08 46.6 2.9 22 9-30 3-24 (301)
420 2dpy_A FLII, flagellum-specifi 96.7 0.001 3.4E-08 49.3 3.1 22 10-31 159-180 (438)
421 3ozx_A RNAse L inhibitor; ATP 96.7 0.00093 3.2E-08 50.7 2.9 22 10-31 27-48 (538)
422 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.001 3.4E-08 48.1 3.0 19 11-29 26-44 (365)
423 4eaq_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 44.8 2.9 23 8-30 26-48 (229)
424 1svm_A Large T antigen; AAA+ f 96.7 0.001 3.5E-08 48.3 2.9 22 9-30 170-191 (377)
425 3j16_B RLI1P; ribosome recycli 96.7 0.001 3.5E-08 51.2 3.0 22 10-31 105-126 (608)
426 3n70_A Transport activator; si 96.6 0.0011 3.7E-08 41.3 2.6 24 8-31 24-47 (145)
427 2yl4_A ATP-binding cassette SU 96.6 0.00084 2.9E-08 51.5 2.5 22 10-31 372-393 (595)
428 2grj_A Dephospho-COA kinase; T 96.6 0.0014 4.9E-08 43.0 3.3 24 7-30 11-34 (192)
429 1njg_A DNA polymerase III subu 96.6 0.0012 4E-08 44.0 2.9 21 10-30 47-67 (250)
430 3qf4_B Uncharacterized ABC tra 96.6 0.00095 3.3E-08 51.3 2.6 22 10-31 383-404 (598)
431 3foz_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 45.9 3.5 22 9-30 11-32 (316)
432 3bk7_A ABC transporter ATP-bin 96.6 0.0013 4.4E-08 50.7 3.2 22 10-31 119-140 (607)
433 4a82_A Cystic fibrosis transme 96.6 0.0008 2.7E-08 51.5 2.1 21 10-30 369-389 (578)
434 3t15_A Ribulose bisphosphate c 96.6 0.0016 5.6E-08 45.5 3.5 24 7-30 35-58 (293)
435 1nlf_A Regulatory protein REPA 96.6 0.0012 4.2E-08 45.6 2.8 21 10-30 32-52 (279)
436 3b9p_A CG5977-PA, isoform A; A 96.6 0.0013 4.6E-08 45.7 3.0 23 8-30 54-76 (297)
437 2chg_A Replication factor C sm 96.6 0.0013 4.5E-08 43.2 2.9 21 10-30 40-60 (226)
438 3h4m_A Proteasome-activating n 96.6 0.0014 4.9E-08 45.2 3.0 23 8-30 51-73 (285)
439 3ozx_A RNAse L inhibitor; ATP 96.5 0.0013 4.5E-08 49.9 2.9 23 10-32 296-318 (538)
440 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0015 5.3E-08 49.5 3.2 23 10-32 314-336 (538)
441 3crm_A TRNA delta(2)-isopenten 96.5 0.0019 6.3E-08 45.9 3.4 22 9-30 6-27 (323)
442 3bk7_A ABC transporter ATP-bin 96.5 0.0014 4.9E-08 50.4 3.0 23 10-32 384-406 (607)
443 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0017 5.8E-08 44.2 3.1 23 8-30 39-61 (262)
444 1tue_A Replication protein E1; 96.5 0.0012 4.1E-08 43.9 2.2 22 9-30 59-80 (212)
445 3syl_A Protein CBBX; photosynt 96.5 0.0021 7.1E-08 44.9 3.6 23 8-30 67-89 (309)
446 3qf4_A ABC transporter, ATP-bi 96.5 0.0011 3.8E-08 50.8 2.3 21 10-30 371-391 (587)
447 1l8q_A Chromosomal replication 96.5 0.0015 5.1E-08 46.1 2.8 22 9-30 38-59 (324)
448 4fcw_A Chaperone protein CLPB; 96.5 0.0025 8.4E-08 44.5 3.9 22 9-30 48-69 (311)
449 3gmt_A Adenylate kinase; ssgci 96.5 0.0019 6.6E-08 43.6 3.1 25 6-30 6-30 (230)
450 3zvl_A Bifunctional polynucleo 96.5 0.0017 5.7E-08 47.7 3.0 23 8-30 258-280 (416)
451 3cf0_A Transitional endoplasmi 96.5 0.0016 5.4E-08 45.7 2.8 22 9-30 50-71 (301)
452 2qmh_A HPR kinase/phosphorylas 96.5 0.0017 6E-08 42.9 2.8 23 9-31 35-57 (205)
453 1d2n_A N-ethylmaleimide-sensit 96.5 0.0027 9.2E-08 43.7 3.9 25 6-30 62-86 (272)
454 1q3t_A Cytidylate kinase; nucl 96.4 0.0021 7.1E-08 43.4 3.2 25 6-30 14-38 (236)
455 2dr3_A UPF0273 protein PH0284; 96.4 0.0019 6.4E-08 43.5 2.9 21 10-30 25-45 (247)
456 2qby_A CDC6 homolog 1, cell di 96.4 0.0017 5.9E-08 46.5 2.9 22 9-30 46-67 (386)
457 3j16_B RLI1P; ribosome recycli 96.4 0.0018 6.1E-08 49.9 3.0 22 11-32 381-402 (608)
458 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.4E-08 42.1 3.1 21 10-30 4-24 (208)
459 3qks_A DNA double-strand break 96.4 0.0021 7.2E-08 42.5 3.0 19 11-29 26-44 (203)
460 1sxj_E Activator 1 40 kDa subu 96.4 0.0015 5E-08 46.6 2.3 22 9-30 37-58 (354)
461 1fnn_A CDC6P, cell division co 96.4 0.0021 7.3E-08 46.1 3.1 21 10-30 46-66 (389)
462 2px0_A Flagellar biosynthesis 96.4 0.002 6.8E-08 45.2 2.8 22 9-30 106-127 (296)
463 1pzn_A RAD51, DNA repair and r 96.4 0.002 6.8E-08 46.3 2.8 22 10-31 133-154 (349)
464 3d3q_A TRNA delta(2)-isopenten 96.3 0.0021 7.1E-08 46.0 2.8 22 9-30 8-29 (340)
465 1a7j_A Phosphoribulokinase; tr 96.3 0.0012 4.1E-08 46.2 1.5 23 8-30 5-27 (290)
466 1sxj_C Activator 1 40 kDa subu 96.3 0.002 6.9E-08 45.8 2.6 21 10-30 48-68 (340)
467 1ofh_A ATP-dependent HSL prote 96.3 0.0025 8.4E-08 44.4 2.9 23 8-30 50-72 (310)
468 1vma_A Cell division protein F 96.3 0.0026 9E-08 44.8 2.9 22 9-30 105-126 (306)
469 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0037 1.3E-07 44.9 3.6 24 7-30 23-46 (359)
470 2iw3_A Elongation factor 3A; a 96.2 0.0031 1E-07 51.1 3.5 24 10-33 463-486 (986)
471 3exa_A TRNA delta(2)-isopenten 96.2 0.0029 1E-07 44.7 2.9 21 10-30 5-25 (322)
472 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0026 9E-08 46.2 2.8 24 7-30 34-57 (392)
473 3eie_A Vacuolar protein sortin 96.2 0.0031 1E-07 44.6 3.0 23 8-30 51-73 (322)
474 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0031 1.1E-07 44.7 3.0 22 9-30 46-67 (322)
475 3a8t_A Adenylate isopentenyltr 96.2 0.003 1E-07 45.1 2.8 21 10-30 42-62 (339)
476 1p5z_B DCK, deoxycytidine kina 96.2 0.0026 8.9E-08 43.6 2.5 23 8-30 24-46 (263)
477 2qgz_A Helicase loader, putati 96.1 0.0034 1.2E-07 44.2 3.1 23 8-30 152-174 (308)
478 3cr8_A Sulfate adenylyltranfer 96.1 0.0026 8.9E-08 48.4 2.5 23 8-30 369-391 (552)
479 3tqf_A HPR(Ser) kinase; transf 96.1 0.0037 1.2E-07 40.4 2.8 22 9-30 17-38 (181)
480 2v1u_A Cell division control p 96.1 0.0026 9E-08 45.6 2.4 23 8-30 44-66 (387)
481 3uk6_A RUVB-like 2; hexameric 96.1 0.0035 1.2E-07 44.9 3.0 22 9-30 71-92 (368)
482 2qen_A Walker-type ATPase; unk 96.1 0.0034 1.2E-07 44.3 2.9 22 9-30 32-53 (350)
483 4f4c_A Multidrug resistance pr 96.1 0.002 6.8E-08 53.9 1.9 21 10-30 1107-1127(1321)
484 1sxj_D Activator 1 41 kDa subu 96.1 0.0033 1.1E-07 44.6 2.9 21 10-30 60-80 (353)
485 2iw3_A Elongation factor 3A; a 96.1 0.0019 6.4E-08 52.3 1.6 22 10-31 701-722 (986)
486 1tf7_A KAIC; homohexamer, hexa 96.1 0.0032 1.1E-07 47.6 2.8 20 11-30 42-63 (525)
487 2fna_A Conserved hypothetical 96.1 0.0035 1.2E-07 44.4 2.8 21 10-30 32-52 (357)
488 3qkt_A DNA double-strand break 96.1 0.0038 1.3E-07 44.5 3.0 20 9-29 25-44 (339)
489 1qhl_A Protein (cell division 96.0 0.0008 2.7E-08 45.4 -0.5 21 11-31 30-50 (227)
490 2z4s_A Chromosomal replication 96.0 0.0035 1.2E-07 46.4 2.8 22 9-30 131-152 (440)
491 4b4t_K 26S protease regulatory 96.0 0.0037 1.3E-07 46.1 2.9 23 8-30 206-228 (428)
492 3lda_A DNA repair protein RAD5 96.0 0.0037 1.3E-07 45.7 2.9 20 10-29 180-199 (400)
493 2ius_A DNA translocase FTSK; n 96.0 0.0033 1.1E-07 47.4 2.6 23 8-30 167-189 (512)
494 1e69_A Chromosome segregation 96.0 0.003 1E-07 44.7 2.3 21 10-30 26-46 (322)
495 3pfi_A Holliday junction ATP-d 96.0 0.0038 1.3E-07 44.2 2.8 23 8-30 55-77 (338)
496 2r62_A Cell division protease 96.0 0.0015 5E-08 44.8 0.6 21 10-30 46-66 (268)
497 2dhr_A FTSH; AAA+ protein, hex 96.0 0.0037 1.3E-07 47.0 2.8 21 10-30 66-86 (499)
498 3ux8_A Excinuclease ABC, A sub 96.0 0.0024 8.4E-08 49.7 1.9 19 10-28 350-368 (670)
499 2qby_B CDC6 homolog 3, cell di 96.0 0.0044 1.5E-07 44.5 3.1 22 9-30 46-67 (384)
500 2bjv_A PSP operon transcriptio 96.0 0.0043 1.5E-07 42.4 2.9 23 9-31 30-52 (265)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.1e-38 Score=216.02 Aligned_cols=146 Identities=38% Similarity=0.687 Sum_probs=129.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+.+||+|+|++|+|||||++++..+.+...+.|+.+.++....+..++..+++.+|||+|++.+..+++.++++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 46899999999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+|+.+..|+..++....++.|++|||||+|+.+.++++.+++++++++ .++.|+||||
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-~~~~~~e~SA 157 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-LNVMFIETSA 157 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEEEBT
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHH-hCCeeEEEeC
Confidence 99999999999999999999888877899999999999998899999999999999 8899999998
No 2
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.6e-35 Score=195.47 Aligned_cols=152 Identities=59% Similarity=1.049 Sum_probs=112.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+++.++.++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..++++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 77788889999999999999999999999888877777888877777788888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 152 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD-YGIKFMETSA 152 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-HTCEEEECCC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999999999999887766799999999999988788899999999988 7899999997
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.1e-34 Score=192.68 Aligned_cols=152 Identities=75% Similarity=1.191 Sum_probs=138.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+++.++.++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 77778889999999999999999999999988887777888877887888889988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 152 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-NKMPFLETSA 152 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCCEEECCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999999999999888777799999999999988888899999999988 8899999997
No 4
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.1e-34 Score=190.44 Aligned_cols=152 Identities=45% Similarity=0.833 Sum_probs=138.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+++.++.++|+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 67788889999999999999999999999988887777888877777888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 154 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NELMFLETSA 154 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEecC
Confidence 99999999999999999999999999887777899999999999987778888999999988 8899999997
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=190.50 Aligned_cols=152 Identities=86% Similarity=1.298 Sum_probs=139.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|++..+..++|+++|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 45666788999999999999999999999988888888888888888888899988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 160 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-LGIPFLETSA 160 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCCEEEECT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHH-cCCcEEEEeC
Confidence 99999999999999999999999999888877899999999999998888999999999999 8899999997
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.9e-34 Score=186.33 Aligned_cols=151 Identities=64% Similarity=1.000 Sum_probs=133.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+.+.+..++|+++|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 67788899999999999999999999999988877777888888888888889988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+..+++++++.. .+++++++||
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 152 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQ-MGIQLFETSA 152 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCCEEECBT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHH-cCCeEEEEEC
Confidence 9999999999999999999999999987665 689999999999988888889999999998 7889999997
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.4e-34 Score=191.28 Aligned_cols=150 Identities=49% Similarity=0.883 Sum_probs=136.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
.+.++.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999998888777788888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++++++. .++++++|||
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 170 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA-QDMYYLETSA 170 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCCEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999999888777799999999999987778889999999988 7899999997
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=191.35 Aligned_cols=150 Identities=49% Similarity=0.846 Sum_probs=127.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
++.++.++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 44567899999999999999999999998887777777777777778888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .++ .+++|||
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~~SA 174 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-YDILCAIETSA 174 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCSEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH-cCCCEEEEEeC
Confidence 999999999999999999999999888767799999999999987778899999999998 777 9999997
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=9.9e-34 Score=185.81 Aligned_cols=150 Identities=47% Similarity=0.882 Sum_probs=136.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
.+.++.++|+++|.+|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 45667899999999999999999999998887777777777777777888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++.+..++++++++. .+++++++||
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 159 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NGLLFLEASA 159 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999999888777899999999999987778889999999998 8899999997
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.2e-33 Score=185.47 Aligned_cols=150 Identities=52% Similarity=0.922 Sum_probs=135.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
+..++.++|+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 34567899999999999999999999998887777777777777777788888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 166 (189)
T 2gf9_A 97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD-LGFEFFEASA 166 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH-cCCeEEEEEC
Confidence 999999999999999999999999887766799999999999988778888999999998 7889999997
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-33 Score=184.44 Aligned_cols=148 Identities=38% Similarity=0.740 Sum_probs=127.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.++.++|+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999888777778887777777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++.+..++++++++. .+++++++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VGAKHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEEBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cCCeEEEecC
Confidence 9999999999999999999998877766799999999999988778899999999998 7899999997
No 12
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=188.04 Aligned_cols=151 Identities=38% Similarity=0.653 Sum_probs=134.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
.+..+..++|+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 45567789999999999999999999999888777778888777777777888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 167 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-IGAIVVETSA 167 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-TTCEEEECBT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999999999999888777799999999999987778889999999988 7899999997
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.5e-33 Score=187.34 Aligned_cols=150 Identities=49% Similarity=0.862 Sum_probs=132.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
+..+..+||+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++++|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 45667899999999999999999999998887777777777777778888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++++++. .++.++++||
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 165 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-HGLIFMETSA 165 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999999887777899999999999987778889999999988 7899999997
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4.4e-33 Score=183.23 Aligned_cols=149 Identities=43% Similarity=0.721 Sum_probs=134.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.....++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45567999999999999999999999988877777777777777788888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 156 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NGLFFMETSA 156 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEEECCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cCCEEEEEEC
Confidence 99999999999999999999999888777899999999999988888899999999988 8899999997
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-33 Score=186.43 Aligned_cols=150 Identities=51% Similarity=0.945 Sum_probs=136.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
...++.++|+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999998887777777777777778888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 152 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH-LGFEFFEASA 152 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHH-CCCeEEEEEC
Confidence 999999999999999999999999887766799999999999988888899999999998 7889999997
No 16
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.1e-33 Score=181.02 Aligned_cols=148 Identities=39% Similarity=0.656 Sum_probs=135.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.++.++|+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999888777778888777777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+++..++++.+++. .+++++++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-IHAIFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999999999888777899999999999988778889999999988 7899999997
No 17
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.6e-33 Score=181.60 Aligned_cols=148 Identities=44% Similarity=0.735 Sum_probs=134.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....++|+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999888777777777777777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 150 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NSLLFMETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cCCeEEEEeC
Confidence 9999999999999999999999887767799999999999987778888999999988 8899999997
No 18
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=188.05 Aligned_cols=151 Identities=48% Similarity=0.864 Sum_probs=129.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
+..+..++|+++|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 45567899999999999999999999998887777777777787788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++++++...++.++++||
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence 99999999999999999999999988877789999999999998777888999999998756899999997
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=181.18 Aligned_cols=149 Identities=47% Similarity=0.907 Sum_probs=126.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
..+..++|+++|++|+|||||++++.+..+. ....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567899999999999999999999988774 355677777777777778888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++.+..++++++++. .+++++++||
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 155 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE-YGLPFMETSA 155 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-HTCCEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH-cCCeEEEEeC
Confidence 999999999999999999999999888767799999999999988888899999999988 7889999997
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.5e-32 Score=180.81 Aligned_cols=146 Identities=31% Similarity=0.482 Sum_probs=130.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.++.+.....++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3579999999999999999999998888777777777666 566778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 150 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES-WNAAFLESSA 150 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH-hCCcEEEEec
Confidence 99999999999999999988866643 5789999999999988889999999999999 8899999997
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-34 Score=191.97 Aligned_cols=151 Identities=50% Similarity=0.952 Sum_probs=138.0
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
+++.++.+||+|+|.+|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 45677889999999999999999999999888777778877777777887888778999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 167 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ-LGFDFFEASA 167 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCeEEEEEC
Confidence 9999999999999999999999999888777899999999999988888999999999998 7889999997
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=5.2e-33 Score=183.34 Aligned_cols=150 Identities=33% Similarity=0.514 Sum_probs=132.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
++.....+||+++|++|+|||||++++.+..+.....++.+..+ ......++..+.+.+||+||++.+...+..+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34556689999999999999999999999888777777776655 56677888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 162 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-YNIPYIETSA 162 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-HTCCEEEEBC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-hCCeEEEecc
Confidence 9999999999999999999999888654 346789999999999988889999999999999 6799999997
No 23
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=184.89 Aligned_cols=150 Identities=43% Similarity=0.782 Sum_probs=135.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
++.+..++|+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 45677899999999999999999999998887777777777777777888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .++.++++||
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 169 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-NGLLFLETSA 169 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEECT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999999877666799999999999987778888999999988 8899999997
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.9e-33 Score=180.00 Aligned_cols=145 Identities=39% Similarity=0.695 Sum_probs=132.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999888777778888777777888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC---cccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++.+++.+..|+..+......+.|+++|+||+|+.+. +++..++++++++. .+++++++||
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 150 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-KGLLFFETSA 150 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-HTCEEEECCT
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999998887777999999999999765 67888999999988 7899999997
No 25
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=187.63 Aligned_cols=149 Identities=46% Similarity=0.815 Sum_probs=125.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
+.+..++|+|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 45678999999999999999999999988877777777777777788888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .++.++++||
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA 169 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NELMFLETSA 169 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEECT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999999999887777899999999999987778888999999988 8899999997
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=5.5e-33 Score=180.85 Aligned_cols=145 Identities=56% Similarity=0.981 Sum_probs=125.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+.++|+++|++|+|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999988877777777777777778888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++++++++. .+++++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~-~~~~~~~~Sa 146 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKE-LGIPFIESSA 146 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHH-HTCCEEECBT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHH-cCCeEEEEEC
Confidence 999999999999999999998887778999999999999 5567888899999988 7889999997
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.2e-33 Score=181.99 Aligned_cols=151 Identities=32% Similarity=0.580 Sum_probs=131.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|.+.....++|+++|.+|+|||||+++|.+..+.....++.+..+. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5556667899999999999999999999998887777777665555 566788888899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++|||++++.++..+..|+..+ +.....+.|+++|+||+|+.+.+++..+++++++.. .++.++++||
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 153 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-HHVAYFEASA 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECBT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-cCCeEEEecC
Confidence 99999999999999999999998888 444456799999999999988778889999999988 8899999997
No 28
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-33 Score=188.37 Aligned_cols=148 Identities=51% Similarity=0.835 Sum_probs=128.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+|+|++++|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 46779999999999999999999999888877778877777777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 157 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQLLFTETSA 157 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TTCEEEECCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999999999887766799999999999987778889999999988 8899999997
No 29
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.7e-32 Score=178.86 Aligned_cols=148 Identities=37% Similarity=0.695 Sum_probs=129.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999888777778888777778888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+++..++++++++...+++++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSA 155 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeC
Confidence 999999999999999999999877654 578999999999997 56788899999998548899999997
No 30
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=4.4e-33 Score=183.15 Aligned_cols=153 Identities=39% Similarity=0.693 Sum_probs=117.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCccccccccccccc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYR 79 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~ 79 (153)
|+++.+..++|+++|++|+|||||++++.+..+.....++.+.++....+.++ +..+.+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 76777888999999999999999999999988877777777777777777776 55689999999999999999999999
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCC-CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTA-NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++++++...+++++++||
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence 99999999999999999999999998877653 5789999999999954 45678889999998558899999997
No 31
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=185.20 Aligned_cols=151 Identities=30% Similarity=0.574 Sum_probs=126.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|++..+..+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 6666778899999999999999999999998887777777765553 456677888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcCce
Q 031777 81 AHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTGIF 147 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~~~ 147 (153)
+|++|+|||++++.+++.+ ..|+..++...+ +.|+++|+||+|+.+ .+.++.++++++++.++.+.
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 9999999999999999998 689998887654 689999999999964 25688899999998845589
Q ss_pred eeecCC
Q 031777 148 FFYPSP 153 (153)
Q Consensus 148 ~~~~Sa 153 (153)
|++|||
T Consensus 179 ~~e~SA 184 (205)
T 1gwn_A 179 YIECSA 184 (205)
T ss_dssp EEECCT
T ss_pred EEEeee
Confidence 999998
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.1e-32 Score=182.94 Aligned_cols=147 Identities=41% Similarity=0.798 Sum_probs=132.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-ccccccccCccEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR-TITSSYYRGAHGI 84 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~ 84 (153)
...++|+++|.+|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 456999999999999999999999988887777887777777888888888999999999999888 8888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 166 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-HSMPLFETSA 166 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCCEEECCS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999999998775 46799999999999987778899999999988 8899999997
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.3e-32 Score=180.47 Aligned_cols=147 Identities=37% Similarity=0.677 Sum_probs=134.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999998888777788887788788888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.+++. .+++++++||
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 158 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSA 158 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-HTCEEEEEBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHH-cCCeEEEEeC
Confidence 999999999999999999999877666799999999999988788888999999988 7899999997
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.2e-33 Score=179.49 Aligned_cols=146 Identities=33% Similarity=0.634 Sum_probs=131.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998887777787777777778888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 148 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-LKLRFYRTSV 148 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHH-cCCeEEEEec
Confidence 9999999999999999999887766 4689999999999987778889999999988 7889999997
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=1.4e-32 Score=182.41 Aligned_cols=150 Identities=40% Similarity=0.779 Sum_probs=132.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEE-EEEEeeCCe---------EEEEEEEeCCCcccccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK-IRTVEQDGK---------TIKLQIWDTAGQERFRT 72 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~d~~g~~~~~~ 72 (153)
++.+..++|+|+|++|+|||||+++|.+..+.....++.+.++. ...+..++. .+.+.+||+||++.+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 36677899999999999999999999998887777777776666 556666655 78999999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeec
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
.+..+++.+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++. .+++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-YGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-cCCCEEEE
Confidence 999999999999999999999999999999999987765 6799999999999987778888999999988 78899999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 165 Sa 166 (195)
T 3bc1_A 165 SA 166 (195)
T ss_dssp CT
T ss_pred EC
Confidence 97
No 36
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-32 Score=183.66 Aligned_cols=152 Identities=36% Similarity=0.677 Sum_probs=130.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 66777888999999999999999999999988887778888777887888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++++++....+++++++||
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeC
Confidence 9999999999999999999999988876653 468999999999997 45678888899988448899999997
No 37
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=182.83 Aligned_cols=146 Identities=25% Similarity=0.414 Sum_probs=124.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..+ ..+++++|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34679999999999999999999999888777777776555 345667888899999999999988774 6789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.++++.++++++++. .++.|++|||
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa 166 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-FGCLFFEVSA 166 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCEEEECCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-cCCcEEEEee
Confidence 999999999999999999999877642 5689999999999987788999999999998 7889999997
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=185.19 Aligned_cols=150 Identities=26% Similarity=0.306 Sum_probs=123.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc-cccccccCc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGA 81 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~ 81 (153)
...+..++|+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456779999999999999999999975443323334444455556677889899999999999987764 777888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++|+|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+.+.++.++++++++. .++.|++|||
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-~~~~~~e~Sa 169 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-LSCKHIETSA 169 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEEEEBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-hCCEEEEEcC
Confidence 999999999999999999999998877654 5799999999999988888999999999998 7889999997
No 39
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-32 Score=180.59 Aligned_cols=151 Identities=48% Similarity=0.856 Sum_probs=133.9
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+.+....++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred cccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 45556677999999999999999999999988887777888777877888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++.++++. .++.++++||
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~Sa 159 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARK-HSMLFIEASA 159 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHH-cCCEEEEecC
Confidence 9999999999999999999999999877653 568999999999994 456888899999998 8899999997
No 40
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=192.17 Aligned_cols=152 Identities=86% Similarity=1.298 Sum_probs=130.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG 80 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 80 (153)
|+++.++.+||+++|.+|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 26 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp C-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred cCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 45566788999999999999999999999988887777787777888888889988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~vSA 177 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-LGIPFLETSA 177 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-TTCCBCCCCC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHH-cCCeEEEEEC
Confidence 99999999999999999999999999887777899999999999988888888888899988 8899999997
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=184.96 Aligned_cols=148 Identities=40% Similarity=0.730 Sum_probs=121.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+|+|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 44579999999999999999999999888777777777777777888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC------CCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT------ANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~------~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+. ..+.+..++++++++. .+++++++||
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~SA 178 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT-YGALFCETSA 178 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH-HTCEEEECCT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH-cCCeEEEeeC
Confidence 999999999999999999999988776679999999999996 4567888999999988 7889999997
No 42
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=5.1e-32 Score=179.01 Aligned_cols=147 Identities=29% Similarity=0.559 Sum_probs=126.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+++|++|+|||||++++.+..+...+.++....+. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 456799999999999999999999998887777777665543 4566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeec
Q 031777 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
|+|||++++.+++.+ ..|+..++...+ +.|+++|+||+|+.+. +.++.++++++++.++.++|++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 679988877654 6899999999999742 56888999999988455899999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 162 Sa 163 (184)
T 1m7b_A 162 SA 163 (184)
T ss_dssp BT
T ss_pred ee
Confidence 98
No 43
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.6e-32 Score=183.90 Aligned_cols=146 Identities=27% Similarity=0.546 Sum_probs=126.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 345699999999999999999999998888887787776653 4566778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCc-eeee
Q 031777 85 IIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGI-FFFY 150 (153)
Q Consensus 85 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 150 (153)
|+|||++++.++.. +..|+..+..... +.|+++|+||+|+.+. +.+..++++++++. .++ .|++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~e 180 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-LGAEIYLE 180 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-HTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH-cCCCEEEE
Confidence 99999999999998 6889999988764 6999999999999753 67999999999999 666 9999
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
|||
T Consensus 181 ~SA 183 (214)
T 3q3j_B 181 GSA 183 (214)
T ss_dssp CCT
T ss_pred ecc
Confidence 998
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=8.6e-33 Score=181.37 Aligned_cols=148 Identities=30% Similarity=0.543 Sum_probs=128.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCC-eEEEEEEEeCCCcccccccccccccCccE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
....++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999999887766667776667777777776 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 154 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-NGFSSHFVSA 154 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCEEEEECT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-cCCcEEEEeC
Confidence 9999999999999999999998876532 3344899999999987778889999999988 7899999997
No 45
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=4.4e-32 Score=176.64 Aligned_cols=145 Identities=26% Similarity=0.317 Sum_probs=115.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT-ITSSYYRGAHGIII 86 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 86 (153)
.+||+++|++|+|||||++++.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999987666555555555666777778899999999999999998876 77778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 148 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-LSCKHIETSA 148 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-cCCcEEEecC
Confidence 9999999999999999998877655 4799999999999988888999999999999 8899999997
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-32 Score=181.73 Aligned_cols=148 Identities=56% Similarity=0.987 Sum_probs=131.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
..+..++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34557999999999999999999999988877777888777877888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++++++++. .+++++++||
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~-~~~~~~~~Sa 163 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKE-LGIPFIESSA 163 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHH-HTCCEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999999999998887777999999999999 5567888889999988 7889999997
No 47
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.6e-32 Score=185.72 Aligned_cols=150 Identities=41% Similarity=0.799 Sum_probs=131.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe----------EEEEEEEeCCCcccccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK----------TIKLQIWDTAGQERFRT 72 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~d~~g~~~~~~ 72 (153)
++.++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 45678899999999999999999999998887777777777776666666665 78999999999999999
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeec
Q 031777 73 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 73 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
.+..+++.+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++++++. .+++++++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~ 178 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-YGIPYFET 178 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-CCCcEEEE
Confidence 999999999999999999999999999999888766553 5799999999999987778889999999998 88999999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 179 Sa 180 (217)
T 2f7s_A 179 SA 180 (217)
T ss_dssp BT
T ss_pred EC
Confidence 97
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-32 Score=180.71 Aligned_cols=146 Identities=27% Similarity=0.428 Sum_probs=124.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999888877777776555 455666677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++++++. .+++++++||
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 168 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES-WGATFMESSA 168 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH-hCCeEEEEeC
Confidence 9999999999999999999887654 35689999999999988888999999999998 7889999997
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.9e-32 Score=175.20 Aligned_cols=145 Identities=34% Similarity=0.611 Sum_probs=127.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|++|+|||||++++.+..+.....++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999998887777777665443 4566777889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++++++.+.+.+++++||
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 99999999999999988887653 3579999999999998878888999999998855899999997
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.5e-31 Score=176.94 Aligned_cols=146 Identities=27% Similarity=0.551 Sum_probs=127.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....+||+++|.+|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456799999999999999999999998887777777765555 4567888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC--cccCHHHHHHHHHHhcCce-eeecCC
Q 031777 85 IIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETAKVYLLLYTGIF-FFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa 153 (153)
|+|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+. +.+..++++++++. .++. ++++||
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa 169 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-LGCVAYIEASS 169 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-HTCSCEEECBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHh-cCCCEEEEeec
Confidence 999999999999997 678888886654 6899999999999753 67889999999998 6666 999997
No 51
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.7e-32 Score=183.01 Aligned_cols=147 Identities=28% Similarity=0.493 Sum_probs=99.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--cCCCCcceeeeeEEEEEEEeeCCe--EEEEEEEeCCCcccccccccccccCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQDGK--TIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
...++|+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999987 777677777766677777778876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCC-CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTA-NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++++++. .+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-cCCEEEEecc
Confidence 999999999999999999999999988876 6799999999999987 788899999999998 7899999997
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=174.50 Aligned_cols=146 Identities=30% Similarity=0.430 Sum_probs=115.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--ccccccccccCccE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTITSSYYRGAHG 83 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~ 83 (153)
++.++|+++|++|+|||||+++|.+..+.... ++.+.+.....+.+++..+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 35799999999999999999999987765443 3344455566777888889999999999987 56667778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++.. .+++++++||
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 150 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV-FDCKFIETSA 150 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-HTSEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH-cCCeEEEEec
Confidence 999999999999999999988887653 34689999999999988888999999999988 7899999997
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.6e-31 Score=176.87 Aligned_cols=145 Identities=34% Similarity=0.598 Sum_probs=127.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeE----------------------------
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKT---------------------------- 56 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (153)
.+..++|+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3467999999999999999999999988887777887777777777776655
Q ss_pred ---------EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 ---------IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ---------~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+.+||+||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 8999999999999999999999999999999999999999999999999877654 89999999999 55
Q ss_pred CcccCHHHHHHHHHHhcCceeeecCC
Q 031777 128 NKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+++..++++++++. .+++++++||
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~Sa 185 (208)
T 3clv_A 161 KFQVDILEVQKYAQD-NNLLFIQTSA 185 (208)
T ss_dssp -CCSCHHHHHHHHHH-TTCEEEEECT
T ss_pred cccCCHHHHHHHHHH-cCCcEEEEec
Confidence 678889999999998 8899999997
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.2e-31 Score=175.42 Aligned_cols=142 Identities=19% Similarity=0.355 Sum_probs=122.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....+||+++|++|+|||||++++.+..+.....++.. .+ ...+.+++..+.+.+||++|++.+. +++++|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 44579999999999999999999999888776666632 33 4677889999999999999998766 77889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCC--CCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+. +.+.+..++++++++.+..+.|++|||
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 999999999999999999999987654 568999999999994 467899999999999944599999997
No 55
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.8e-31 Score=174.34 Aligned_cols=141 Identities=22% Similarity=0.328 Sum_probs=118.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+++|++|+|||||++++.+..+.. ..++.+..+ ...+.+++..+.+.+||+||++. ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 356999999999999999999999988765 556655333 46677888889999999999875 46788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCC--CCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLT--ANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~ilv~~K~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+..++++++++...+++++++||
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 9999999999999998776665543 3578999999999994 457789999999998856899999997
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-31 Score=175.03 Aligned_cols=146 Identities=32% Similarity=0.567 Sum_probs=126.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999888777777765544 345667788899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecC
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 152 (153)
+|||++++.++..+. .|+..+....+ +.|+++|+||+|+.+. +.+..++++++++..+...|++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999987 79998887655 6899999999999764 468889999999984434999999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 174 a 174 (194)
T 2atx_A 174 A 174 (194)
T ss_dssp T
T ss_pred C
Confidence 7
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=2.5e-31 Score=172.34 Aligned_cols=144 Identities=33% Similarity=0.540 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|++|+|||||++++.++.+.....++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999888776666665533 356677888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 147 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-WGCPFMETSA 147 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-HTSCEEEECT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-hCCCEEEecC
Confidence 999999999999998888866543 5799999999999987778889999999988 7889999997
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.98 E-value=4.5e-31 Score=171.36 Aligned_cols=143 Identities=29% Similarity=0.420 Sum_probs=104.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.+||+++|++|+|||||++++.+...... .++.+.+. ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987654322 23333333 35567888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++++++.. .+++++++||
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 145 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-FDCKFIETSA 145 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-TTCEEEECBG
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH-hCCcEEEecc
Confidence 99999999999999988887653 35799999999999998889999999999998 8899999997
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=2.6e-31 Score=172.41 Aligned_cols=145 Identities=36% Similarity=0.577 Sum_probs=124.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|++|+|||||++++.+..+.....++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 368999999999999999999998887766666655444 3456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 148 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-WNVNYVETSA 148 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-HTCEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-cCCeEEEeCC
Confidence 9999999999999999998877654 5799999999999987778889999999988 7889999997
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.98 E-value=4.7e-31 Score=176.85 Aligned_cols=147 Identities=35% Similarity=0.558 Sum_probs=129.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....++|+|+|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34569999999999999999999998887777666665444 35567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 158 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WNVNYVETSA 158 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEEECT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-hCCeEEEEeC
Confidence 999999999999999999999877654 5699999999999988778899999999988 7889999997
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=3.6e-31 Score=174.68 Aligned_cols=147 Identities=35% Similarity=0.558 Sum_probs=127.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34569999999999999999999998887766666655444 34566788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 162 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WNVNYVETSA 162 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cCCeEEEeCC
Confidence 999999999999999999988877654 4799999999999987778889999999988 8899999997
No 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.2e-31 Score=178.30 Aligned_cols=149 Identities=25% Similarity=0.361 Sum_probs=120.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCc--CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-cccccccccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDS--YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYR 79 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~ 79 (153)
+..+..+||+++|++|+|||||++++.+.. +... .++.+.++....+.+++..+.+.+||++|... +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 344567999999999999999999998643 2333 23344455566677889889999999999876 4556677889
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++++|+|||++++.+|+.+..|+..+.... ..+.|++||+||+|+.+.+++..++++.++.. .+++|++|||
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~-~~~~~~e~SA 184 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-FDCKFIETSA 184 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH-cCCEEEEEeC
Confidence 9999999999999999999999988876542 35689999999999987778889999999888 7889999998
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.98 E-value=4.9e-31 Score=177.78 Aligned_cols=146 Identities=30% Similarity=0.583 Sum_probs=124.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999888777777766444 345667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcc--------cCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+. .|+..++...+ +.|+++|+||+|+.+.+. +..++++++++.....+|+++||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999986 79999987765 699999999999976654 47888999998844459999997
No 64
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4e-31 Score=176.30 Aligned_cols=145 Identities=33% Similarity=0.481 Sum_probs=126.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999888777667666444 34566788889999999999988 777888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++++++. .+++++++||
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 171 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-LACAFYECSA 171 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-HTSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-hCCeEEEECC
Confidence 9999999999999999998887754 35799999999999988788999999999988 7899999997
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=1.3e-30 Score=174.39 Aligned_cols=147 Identities=30% Similarity=0.484 Sum_probs=118.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
....++|+++|++|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45679999999999999999999998887777666665444 35567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC------------CcccCHHHHHHHHHHhcCceeeec
Q 031777 85 IIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA------------NKVVSYETAKVYLLLYTGIFFFYP 151 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (153)
|+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+ .+.+..++++.+++.....+|++|
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999987 79998887765 699999999999965 356788899999988444499999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 175 Sa 176 (201)
T 2q3h_A 175 SA 176 (201)
T ss_dssp CT
T ss_pred ec
Confidence 97
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=1.5e-30 Score=171.61 Aligned_cols=145 Identities=29% Similarity=0.553 Sum_probs=125.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999998888777666665444 355667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCc-eeeec
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGI-FFFYP 151 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 151 (153)
+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+. +.+..++++++++. .+. +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh-cCCcEEEEe
Confidence 999999999999987 69888887765 6899999999999654 46788899999998 555 99999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 160 Sa 161 (186)
T 1mh1_A 160 SA 161 (186)
T ss_dssp CT
T ss_pred cC
Confidence 97
No 67
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2.4e-31 Score=179.99 Aligned_cols=148 Identities=30% Similarity=0.524 Sum_probs=124.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCcccccccccccccCccE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
....+||+++|.+|+|||||+++|.+..+.....++.+.......+... +..+.+.+||+||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4457999999999999999999999888776666666655554444443 444889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.++.. .+++++++||
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 156 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-KNYEYFEISA 156 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT-CCCEEEEEBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-cCCcEEEEec
Confidence 99999999999999999999999888777799999999999988888999999999988 8999999997
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=3.1e-30 Score=170.53 Aligned_cols=145 Identities=33% Similarity=0.594 Sum_probs=123.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||+++|.+..+.....++.. +.....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999998887766666654 344456678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..++++++++. .+++++++||
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~Sa 147 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARS-YGIPFIETSA 147 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHH-HTCCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999998877543 579999999999996 456788899999998 7899999997
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.5e-31 Score=170.44 Aligned_cols=145 Identities=29% Similarity=0.492 Sum_probs=124.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|++|+|||||++++.+..+.....++.+..+. .....++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998877666666554443 445677888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++.++.. .+++++++||
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa 148 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART-WKCAFMETSA 148 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH-HTCEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hCCeEEEecC
Confidence 9999999999998888888876543 4689999999999987778888888999888 7889999997
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3.8e-30 Score=172.32 Aligned_cols=145 Identities=30% Similarity=0.583 Sum_probs=125.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+++|.+|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45689999999999999999999998887777776665554 34667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCc-eeeec
Q 031777 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGI-FFFYP 151 (153)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 151 (153)
+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+. +.+..++++++++. .+. .++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR-ISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh-CCCcEEEEe
Confidence 99999999999998 578888877654 6899999999999765 45788899999998 555 89999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 180 SA 181 (201)
T 2gco_A 180 SA 181 (201)
T ss_dssp CT
T ss_pred eC
Confidence 97
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=175.42 Aligned_cols=145 Identities=32% Similarity=0.625 Sum_probs=105.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||+++|.+..+...+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999998887766666665433 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCc------------ccCHHHHHHHHHHhcCc-eeeec
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKVYLLLYTGI-FFFYP 151 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (153)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+ .++.++++++++. .++ .+++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS-VGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh-cCCCEEEEe
Confidence 999999999999986 69988887654 68999999999997653 6788899999998 555 99999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 189 SA 190 (214)
T 2j1l_A 189 SA 190 (214)
T ss_dssp BT
T ss_pred cC
Confidence 97
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=2.7e-30 Score=173.50 Aligned_cols=146 Identities=28% Similarity=0.513 Sum_probs=123.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...+||+++|.+|+|||||++++.++.+.....++... .....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45699999999999999999999998887776666653 34456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcc------------cCHHHHHHHHHHhcCceeeecC
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV------------VSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~S 152 (153)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+. +..+++.++++..+..+++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 7998888776 4699999999999976543 7888999999985556799999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 186 A 186 (204)
T 4gzl_A 186 A 186 (204)
T ss_dssp T
T ss_pred C
Confidence 8
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.2e-29 Score=168.25 Aligned_cols=145 Identities=33% Similarity=0.589 Sum_probs=114.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|.+|+|||||+++|.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3568999999999999999999998877666555554333 356677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..++++++++. .+++++++||
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~Sa 164 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKS-YGIPFIETSA 164 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH-HTCCEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999999999999988877654 5689999999999976 56788899999988 7889999997
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.1e-30 Score=171.16 Aligned_cols=146 Identities=29% Similarity=0.586 Sum_probs=119.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34689999999999999999999998887776666655444 34667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCceeeecC
Q 031777 86 IVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGIFFFYPS 152 (153)
Q Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 152 (153)
+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+. +.+..+++++++.......++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 678888877654 6899999999999654 457888899999883334999999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 181 A 181 (207)
T 2fv8_A 181 A 181 (207)
T ss_dssp T
T ss_pred C
Confidence 7
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.5e-30 Score=170.76 Aligned_cols=145 Identities=28% Similarity=0.477 Sum_probs=123.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||+++|.+..+.....++.+..+. ..+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 45699999999999999999999998877666666654433 44567888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..++++++++. .++.++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~Sa 152 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQE-WKCAFMETSA 152 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHH-HTCEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHH-hCCeEEEEec
Confidence 99999999999998888887766543 3689999999999975 56788888999888 7889999997
No 76
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.8e-29 Score=168.74 Aligned_cols=147 Identities=50% Similarity=0.833 Sum_probs=129.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
++.++++++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46799999999999999999999998877777777777777778888998899999999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|+|+.++.+++.+..|+..+......+.|+++++||+|+.+.+.+..+++++++.. +++.++++||
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~~d~Sa 149 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NNLSFIETSA 149 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cCCeEEEEeC
Confidence 999999999999988898888776556789999999999987777888999999998 8899999997
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=4.9e-31 Score=173.53 Aligned_cols=146 Identities=31% Similarity=0.600 Sum_probs=110.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35699999999999999999999988877666666543332 23445666788889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcc----------cCHHHHHHHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV----------VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+. .|+..++.... +.|+++|+||+|+.+.+. +..++++++++..+..+|++|||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 999999999999987 69998887755 689999999999976554 47888999998833359999997
No 78
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.3e-29 Score=163.87 Aligned_cols=143 Identities=33% Similarity=0.572 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 87 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 87 (153)
.++|+++|++|+|||||++++.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999998877666555554333 45566788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 88 YDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +.+..++++++++. .+++++++||
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~Sa 146 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARS-YGIPYIETSA 146 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH-HTCCEEEECT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHH-cCCeEEEecC
Confidence 999999999999999998877654 4699999999999976 56778888999988 7889999997
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.3e-30 Score=176.86 Aligned_cols=147 Identities=32% Similarity=0.597 Sum_probs=126.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
......+||+++|.+|+|||||+++++.+.+.....++.+.+........++..+.+.+||+||++.+...+..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 44566799999999999999999998776666666677777777778888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++|+|||++++.++..+..|+..+....+ +.|+++|+||+|+.+.+ +.. +...+++. .++.+++|||
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~-~~~-~~~~~~~~-~~~~~~~~Sa 156 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK-VKA-KSIVFHRK-KNLQYYDISA 156 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCS-SCG-GGCCHHHH-HTCEEEECBG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccc-ccH-HHHHHHHH-cCCEEEEEeC
Confidence 99999999999999999999999988765 68999999999997643 222 55677777 7899999997
No 80
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.9e-29 Score=167.91 Aligned_cols=146 Identities=26% Similarity=0.379 Sum_probs=117.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--cCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc-ccccccccccCcc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER-FRTITSSYYRGAH 82 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 82 (153)
+..+||+++|++|+|||||++++.+. .+.... ++.+.++....+.+++..+.+.+||++|... ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 35699999999999999999999863 233332 2344455556677889889999999999876 4566777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++.. .+++|++|||
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~-~~~~~~e~SA 153 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVV-FDXKFIETSA 153 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECBT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHH-hCCceEEecc
Confidence 9999999999999999999988887653 35689999999999987778888888888888 7889999998
No 81
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.4e-29 Score=166.01 Aligned_cols=150 Identities=50% Similarity=0.846 Sum_probs=134.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
.+.+..++++++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||++|.+.+...+..++..++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 44567899999999999999999999998887777888888888888889998889999999999999888899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++++|+|..+..+++.+..|+..+......+.|+++++||+|+.+.+.+..+++++++.. +++.++++||
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~ld~Sa 173 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NGLSFIETSA 173 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEeC
Confidence 999999999999999888898888776556789999999999987777888999999998 8899999997
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=3.3e-30 Score=171.45 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=115.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-----------cceeeeeEEEEEEE-eeCCeEEEEEEEeCCCcccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIES-----------YISTIGVDFKIRTV-EQDGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~g~~~~ 70 (153)
...+..+||+++|++|+|||||++.+.+ .+... ..++.+.++....+ ..++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3456789999999999999999977765 33333 23344444443333 55677889999999999999
Q ss_pred cccccccccCccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhc
Q 031777 71 RTITSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYT 144 (153)
Q Consensus 71 ~~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~ 144 (153)
...+..+++++|++|+|||++ +.++|..+..|+..++. ...+.|+++|+||+|+.+ .+..++++++++. .
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~-~ 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDP-E 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCT-T
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHh-c
Confidence 999999999999999999999 56677777778777743 235699999999999975 4888999999998 6
Q ss_pred Cc-eeeecCC
Q 031777 145 GI-FFFYPSP 153 (153)
Q Consensus 145 ~~-~~~~~Sa 153 (153)
++ +++++||
T Consensus 164 ~~~~~~~~Sa 173 (198)
T 3t1o_A 164 GKFPVLEAVA 173 (198)
T ss_dssp CCSCEEECBG
T ss_pred CCceEEEEec
Confidence 77 9999997
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=3.9e-29 Score=166.66 Aligned_cols=146 Identities=18% Similarity=0.284 Sum_probs=109.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGA 81 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 81 (153)
+......+|+|+|.+|+|||||+++|.+..+.. .+.++.+. ....+...+ +.+.+||+||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 445667999999999999999999999988877 66666663 333444444 7899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEecCCCCCCcc---cCHHHHHHHH-HHhcCceee
Q 031777 82 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS--------DNVNKLLVGNKCDLTANKV---VSYETAKVYL-LLYTGIFFF 149 (153)
Q Consensus 82 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~ilv~~K~D~~~~~~---~~~~~~~~~~-~~~~~~~~~ 149 (153)
|++|+|||++++.+|..+..|+..+..... .+.|+++|+||+|+.+... +......... +. .++.++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 166 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD-HPFVIF 166 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT-SCEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC-CeeEEE
Confidence 999999999999999999888887755421 2689999999999976521 2111111111 34 788999
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
+|||
T Consensus 167 ~~Sa 170 (199)
T 4bas_A 167 ASNG 170 (199)
T ss_dssp ECBT
T ss_pred EeeC
Confidence 9997
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.7e-28 Score=164.06 Aligned_cols=140 Identities=25% Similarity=0.341 Sum_probs=108.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|++|+|||||++++.+..+. .+.++.+.. ...+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999987764 344554433 34555666 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh----------------cCceee
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY----------------TGIFFF 149 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (153)
|+|++++.+|.....|+..+... ...+.|+++|+||+|+.+ .++.+++++++... .++.++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 99999999999999988887654 235799999999999965 57778888776531 457899
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
+|||
T Consensus 177 ~~SA 180 (198)
T 1f6b_A 177 MCSV 180 (198)
T ss_dssp ECBT
T ss_pred EEEC
Confidence 9998
No 85
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=3e-29 Score=167.29 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEee-CCeEEEEEEEeCCCcccccccc---cccc
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQ-DGKTIKLQIWDTAGQERFRTIT---SSYY 78 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~---~~~~ 78 (153)
...++.+||+++|++|+|||||++++.+. +..................+ ++..+.+.+||+||++.+.... ..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 34566799999999999999999988764 33232222221112222223 2455789999999999987776 7899
Q ss_pred cCccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-------CcccCHHHHHHHHH----HhcC
Q 031777 79 RGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA-------NKVVSYETAKVYLL----LYTG 145 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~-------~~~~~~~~~~~~~~----~~~~ 145 (153)
+++|++|+|||++++ +++..+..|+..+.... .+.|+++|+||+|+.+ .+.+..++++++++ . .+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK-LH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT-SC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc-CC
Confidence 999999999999997 66666667777665444 4699999999999865 35677777888888 5 78
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
+.|++|||
T Consensus 172 ~~~~e~Sa 179 (196)
T 3llu_A 172 LSFYLTSI 179 (196)
T ss_dssp EEEEEECT
T ss_pred cceEEEEe
Confidence 89999998
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=5.3e-28 Score=160.65 Aligned_cols=140 Identities=25% Similarity=0.325 Sum_probs=113.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|++|+|||||++++.+..+. .+.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999987764 34455543 345566676 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH-----------hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL-----------YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa 153 (153)
|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+ .++.+++++.... ..++++++|||
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999998888876542 35689999999999975 5667777766543 14678999997
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=160.65 Aligned_cols=143 Identities=21% Similarity=0.336 Sum_probs=113.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCc-CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
....++|+++|.+|+|||||+++|.+.. +.....++.+ +....+.+++ +.+.+||+||++.+...+..+++++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456999999999999999999999876 4555556555 4445555665 689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcccCHHHHHHHHH--H--hcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETAKVYLL--L--YTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa 153 (153)
+|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+ ....++..++.. . ..++.+++|||
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccC
Confidence 9999999999999999888888766543 4789999999999965 345566666553 1 14678999997
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.1e-28 Score=159.33 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=108.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.+..+.. ..++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346899999999999999999999877653 345544 3344555554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHH-----HHHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK-----VYLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa 153 (153)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++.. ..+.. .+++++++||
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa 150 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKD-RKWQIFKTSA 150 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTT-SCEEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccC-CceEEEECcC
Confidence 9999999999999888877765443 25789999999999976422 22222 22223 5678999997
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.5e-29 Score=167.32 Aligned_cols=144 Identities=26% Similarity=0.463 Sum_probs=106.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--cCCCCcceeeeeEEEEEEEee---CCeEEEEEEEeCCCcccccccccccccCcc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD--SYIESYISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQERFRTITSSYYRGAH 82 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 82 (153)
.+||+++|++|+|||||++++.+. .+...+.++.+.++....+.. ++..+.+.+||++|++.+...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 455555666665555444333 235678999999999999998999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC---HHHHHHHHHHhcCce----eeecCC
Q 031777 83 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YETAKVYLLLYTGIF----FFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~---~~~~~~~~~~~~~~~----~~~~Sa 153 (153)
++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.+.+.+. .+.++.+++. .+++ |+++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNK-RGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC-TTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHh-cCCcchhheEEEec
Confidence 99999999987 589999999998877653 68999999999997655443 3445666665 5665 999998
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=3.7e-29 Score=162.00 Aligned_cols=137 Identities=25% Similarity=0.448 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 88 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 88 (153)
+||+++|++|+|||||++++.+..+.. ..|+.+ +....+...+ +.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 345554 3333444444 78999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHH-----HHHhcCceeeecCC
Q 031777 89 DVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVY-----LLLYTGIFFFYPSP 153 (153)
Q Consensus 89 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa 153 (153)
|++++.++.....|+..+... ...+.|+++|+||+|+.+. ...++..+. ++. .++++++|||
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 143 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRH-RNWYIQATCA 143 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSS-CCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccC-ccEEEEEccc
Confidence 999999999988888877553 3356899999999999653 222222221 112 4567999997
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=9.6e-29 Score=164.48 Aligned_cols=140 Identities=23% Similarity=0.414 Sum_probs=103.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.++.+. ...|+.+ +....+...+ +.+.+||+||++.+...+..+++++|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34699999999999999999999987765 3344444 3344455555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHH-----HHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVY-----LLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+. +.. .++++++|||
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~-~~~~~~~~SA 172 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRS-RTWYVQATCA 172 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSS-CCEEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccC-CceEEEECcC
Confidence 9999999999999988888775432 356899999999999653 222222221 112 4567999997
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.3e-27 Score=157.85 Aligned_cols=141 Identities=27% Similarity=0.451 Sum_probs=110.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.+.. .....++.+ .....+.+++ +.+.+||+||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 457999999999999999999999877 555566655 3344555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..+.... ..+++++++||
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeC
Confidence 999999999999998888777554 23568999999999997642 33333332211 15678999997
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1e-27 Score=171.18 Aligned_cols=144 Identities=28% Similarity=0.559 Sum_probs=125.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+++|.+|+|||||++++.++.+.....++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999998888777766665444 4556788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC------------cccCHHHHHHHHHHhcCc-eeeecC
Q 031777 87 VYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN------------KVVSYETAKVYLLLYTGI-FFFYPS 152 (153)
Q Consensus 87 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S 152 (153)
|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+. +.+..++++++++. .++ ++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH-cCCcEEEEec
Confidence 99999999999987 68888877665 7999999999999653 56888999999998 565 999999
Q ss_pred C
Q 031777 153 P 153 (153)
Q Consensus 153 a 153 (153)
|
T Consensus 311 a 311 (332)
T 2wkq_A 311 A 311 (332)
T ss_dssp T
T ss_pred C
Confidence 7
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.1e-28 Score=162.21 Aligned_cols=142 Identities=25% Similarity=0.403 Sum_probs=110.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+|+|++|+|||||+++|.+..+.....++.+.++. .+...+ +.+.+||+||++.+...+..+++++|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 35699999999999999999999998887666677665443 344444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHH-H---hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLL-L---YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~-~---~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+... . ..++.++++||
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA 166 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISC 166 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEEC
Confidence 9999999999999988887775532 357899999999999753 22222222211 1 14568999997
No 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=4.1e-28 Score=172.09 Aligned_cols=144 Identities=22% Similarity=0.326 Sum_probs=112.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCC---CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-----cccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-----RTITSSYY 78 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----~~~~~~~~ 78 (153)
..+||+++|++|+|||||++++.++... ..+.+|.+..+ ..+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3689999999999999999998876322 12334444333 3444433 478999999999988 77888899
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCCC--Ccc----cCHHHHHHHHHHhc--Ccee
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--NKV----VSYETAKVYLLLYT--GIFF 148 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~ilv~~K~D~~~--~~~----~~~~~~~~~~~~~~--~~~~ 148 (153)
+++|++|+|||++++.+++.+..|...+.... .++.|+++|+||+|+.+ .++ +..++++++++.++ .+++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554332 34699999999999987 454 77788899998833 3899
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
++|||
T Consensus 159 ~~tSa 163 (307)
T 3r7w_A 159 FPTSI 163 (307)
T ss_dssp EECCT
T ss_pred EEeee
Confidence 99997
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-27 Score=158.61 Aligned_cols=141 Identities=21% Similarity=0.358 Sum_probs=107.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|++|+|||||++++.++.+. ...++.+. ....+.+++ +.+.+||+||++.+...+..+++++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34699999999999999999999987765 44455442 334445555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|+|++++.+++....|+..+.... ..+.|+++|+||+|+.+ ....++..+.... ..++.++++||
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 9999999999999998888886653 35689999999999975 3344454444321 14678999997
No 97
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=1e-27 Score=157.98 Aligned_cols=143 Identities=21% Similarity=0.333 Sum_probs=109.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 83 (153)
.....++|+++|.+|+|||||+++|.+..+ ....++.+.. ...+.+++ +.+.+||+||++.+...+..+++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 344579999999999999999999998776 3444444433 33444555 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 84 IIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... ..++.+++|||
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence 999999999999999988887776542 356899999999999653 334444433311 14568999997
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=2.1e-28 Score=162.14 Aligned_cols=140 Identities=22% Similarity=0.346 Sum_probs=107.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.++.+.. ..++.+ +....+..++ +.+.+||+||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999998776643 344444 3334444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHH-----HHHHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKV-----YLLLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa 153 (153)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..+ .+.. .++++++|||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa 165 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMN-RTWTIVKSSS 165 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccC-CceEEEEccC
Confidence 9999999999999888877775543 3578999999999997542 2222222 1222 4568999997
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.3e-30 Score=173.60 Aligned_cols=145 Identities=30% Similarity=0.568 Sum_probs=120.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|.+|+|||||++++.+..+.....++....+ ...+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999998887766666654333 344556677788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCc------------ccCHHHHHHHHHHhcCc-eeeec
Q 031777 86 IVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKVYLLLYTGI-FFFYP 151 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (153)
+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+ .+..++++++++. .++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKYLEC 184 (204)
Confidence 999999999999886 78888876554 68999999999997543 5677788888888 555 89999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 185 SA 186 (204)
T 3th5_A 185 SA 186 (204)
Confidence 97
No 100
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=3e-27 Score=155.83 Aligned_cols=140 Identities=29% Similarity=0.377 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.+..+. ...++.+ +....+.+++ +.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999987542 3345554 3344555565 78999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHH-----HHhcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYL-----LLYTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa 153 (153)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+. .++..+.. .. .++.+++|||
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa 159 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRD-RVWQIQSCSA 159 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccC-CceEEEEccC
Confidence 999999999999988888776443 235689999999999976432 23332221 12 4578999998
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5.1e-28 Score=159.27 Aligned_cols=141 Identities=24% Similarity=0.367 Sum_probs=105.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
+..++|+++|++|+|||||++++.++.+ ....++.+. ....+.+++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4579999999999999999999997766 334444442 334455555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.... ..+++++++||
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa 161 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSA 161 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence 9999999999999988888876553 356899999999999653 334444433321 13457999997
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=169.31 Aligned_cols=149 Identities=21% Similarity=0.341 Sum_probs=109.0
Q ss_pred CCCceeeEEEEEcCC---------CCcHHHHHHHHhc---CcCCCCcceee-eeEEEEEE--------------EeeCCe
Q 031777 3 PEYDYLFKLLLIGDS---------GVGKSCLLLRFAD---DSYIESYISTI-GVDFKIRT--------------VEQDGK 55 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 55 (153)
+..+..+||+++|.+ |+|||||+++|.+ ..+.....++. +.++.... ...++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345667999999999 9999999999998 55555555543 22221111 113566
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEECC
Q 031777 56 TIKLQIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIIVYDVT 91 (153)
Q Consensus 56 ~~~~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 91 (153)
.+.+.+|| ++|++.+..++..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78999999 6677777777777777 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 92 DQ--ESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 92 ~~--~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++ .+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+ ++++++++...++++++|||
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SA 236 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSA 236 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBT
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEEC
Confidence 98 9999999999988765 3456899999999999765555 67788887645889999997
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=3.2e-27 Score=159.25 Aligned_cols=121 Identities=18% Similarity=0.267 Sum_probs=90.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe-EEEEEEEeCCCcccccc-cccccccCccE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK-TIKLQIWDTAGQERFRT-ITSSYYRGAHG 83 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-~~~~~~~~~~~ 83 (153)
...++|+++|++|+|||||+++|.+..+...+.++ ..+.. .+.+++. .+.+.+||+||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45699999999999999999999988877665433 32333 2555543 57899999999999887 78889999999
Q ss_pred EEEEEECCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEecCCCCCCc
Q 031777 84 IIIVYDVTDQE-SFNNVKQ-WLNEIDRY--ASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 84 ~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~~~ilv~~K~D~~~~~ 129 (153)
+|+|||+++.. ++..... |...+... ...+.|+++|+||+|+.+.+
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 99999999853 4555444 44444432 34568999999999997643
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.6e-27 Score=168.76 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC---CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc---cccccccCccE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIE---SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---ITSSYYRGAHG 83 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~ 83 (153)
||+++|+.|+|||||++++.+.-.+. ...++.+.++.. + + ..+++++|||+|+++|.. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887653322 134555544432 2 2 337899999999999964 36889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-------cccCHHHHHHHHHHh---cCceeeec
Q 031777 84 IIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-------KVVSYETAKVYLLLY---TGIFFFYP 151 (153)
Q Consensus 84 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~ 151 (153)
+|+|||++++ +.++....|+..+.... ++.|+++++||+|+.++ |++..++++++++.. .++.|+||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 22233333444444443 47999999999999764 468888888888851 57899999
Q ss_pred CC
Q 031777 152 SP 153 (153)
Q Consensus 152 Sa 153 (153)
||
T Consensus 155 SA 156 (331)
T 3r7w_B 155 SI 156 (331)
T ss_dssp CS
T ss_pred cc
Confidence 98
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=6.5e-26 Score=154.48 Aligned_cols=144 Identities=19% Similarity=0.102 Sum_probs=98.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc---------ccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR---------TITSS 76 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~ 76 (153)
+..++|+|+|.+|+|||||+++|.+..+.....+..+.+.....+..++ ..+.+||+||..... .....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4569999999999999999999998776433333333333434444454 689999999983211 11233
Q ss_pred cccCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH---HHHHHHHHhcC--ceee
Q 031777 77 YYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE---TAKVYLLLYTG--IFFF 149 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~---~~~~~~~~~~~--~~~~ 149 (153)
++..+|++|+|+|++++.++.. ...|+..+.... .+.|+++|+||+|+.+.+++..+ .+++++.. .+ +.++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN-VKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH-CCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh-cCCCceEE
Confidence 4678899999999999888752 234555554432 36899999999999877666655 45666666 55 8999
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
+|||
T Consensus 183 ~~SA 186 (228)
T 2qu8_A 183 SFST 186 (228)
T ss_dssp ECCT
T ss_pred EEec
Confidence 9997
No 106
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.9e-27 Score=160.82 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=106.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC---cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC-
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG- 80 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~- 80 (153)
....++|+++|++|+|||||+++|.+..+... ..++.+.++ ....+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999998775432 223322111 33578999999999998888888877
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcccC------HHHHHHHHHHhcCc
Q 031777 81 ---AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVS------YETAKVYLLLYTGI 146 (153)
Q Consensus 81 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ilv~~K~D~~~~~~~~------~~~~~~~~~~~~~~ 146 (153)
++++|+|+|++ ++.++.....|+..+... ...+.|+++|+||+|+.+.+.+. .+++.+++.. .++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~-~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER-RKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH-Hhc
Confidence 89999999999 888999888888777554 34579999999999998765544 5567777777 677
Q ss_pred eeeecCC
Q 031777 147 FFFYPSP 153 (153)
Q Consensus 147 ~~~~~Sa 153 (153)
.|+++||
T Consensus 159 ~~~~~Sa 165 (218)
T 1nrj_B 159 SLNEVER 165 (218)
T ss_dssp HHHC---
T ss_pred ccccccc
Confidence 8888886
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=5e-26 Score=149.04 Aligned_cols=140 Identities=20% Similarity=0.203 Sum_probs=102.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 84 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 84 (153)
.+..++|+++|++|+|||||++++.+..+.....++.+.++....+.+++ ..+.+||+||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34579999999999999999999999887766655555455555566676 4678999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhc--------CceeeecCC
Q 031777 85 IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYT--------GIFFFYPSP 153 (153)
Q Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa 153 (153)
|+|+|++++..... +..+......+.|+++|+||+|+.+. ..++......... .++++++||
T Consensus 83 i~v~d~~~~~~~~~----~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 83 ILVVAADDGVMPQT----VEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEETTCCCCHHH----HHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEECCCCCcHHH----HHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999988432221 22233333346899999999999753 2333333333211 158999997
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=2.8e-26 Score=149.08 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=98.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc------ccccccc--
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYYR-- 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~-- 79 (153)
.++|+++|++|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+||+||+..+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 48999999999999999999998765444444444444444555665 5799999999887652 3355554
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++++++|+|.++.+. ...|+..+.. .+.|+++|+||+|+.+.+.+.. +++++++. .+++++++||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~-~~~~~~~~SA 146 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKI-LGVKVVPLSA 146 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHH-HTSCEEECBG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHH-hCCCEEEEEc
Confidence 8999999999987543 3446666654 3689999999999865444443 46778877 6789999997
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=162.72 Aligned_cols=140 Identities=25% Similarity=0.431 Sum_probs=101.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
..++|+|+|.+|+|||||+++|.+..+... .++.+ .....+...+ +.+.+||+||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998776533 34444 3333444454 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
|||++++.+|..+..|+..+... ...+.|+++|+||+|+.+.. ..++....... ..+++++++||
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEEC
Confidence 99999999999888766665433 33578999999999997643 22222222111 14567999997
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.7e-25 Score=166.70 Aligned_cols=141 Identities=24% Similarity=0.440 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
...++|+++|.+|+|||||+++|.+..+.. ..++.+. ....+.+.+ +.+.+|||||++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccce--eEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 356999999999999999999999877543 3455543 333444444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccCHHHHHHHHHH----hcCceeeecCC
Q 031777 86 IVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKVYLLL----YTGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa 153 (153)
+|||++++.+|..+..|+..+.... ..+.|++||+||+|+.+. ...++..+.... ..++++++|||
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA 465 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCA 465 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBT
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEEC
Confidence 9999999999999988877775543 357999999999999653 223333222111 14557999997
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=2e-25 Score=147.49 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=102.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc------cccccccc-
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~- 79 (153)
..++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998655444444444455555666666 689999999998774 33455554
Q ss_pred -CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.+.+. ++++++++. .+++++++||
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~-~~~~~~~~Sa 150 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKI-LGVKVVPLSA 150 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHH-HTSCEEECBG
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHH-hCCCeEEEEe
Confidence 4899999999875 4555667666654 468999999999986544444 456778877 6789999997
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.5e-25 Score=169.38 Aligned_cols=144 Identities=21% Similarity=0.294 Sum_probs=111.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEE------Ee--eCCeEEEEEEEeCCCcccccccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRT------VE--QDGKTIKLQIWDTAGQERFRTITSS 76 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~d~~g~~~~~~~~~~ 76 (153)
....+||+++|.+|+|||||++++.+..+.....++.+.++.... +. .++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 345799999999999999999999998887777777776655432 11 1233578999999999999999999
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++.++++|+|+|+++. +....|+..+....+ +.|+++|+||+|+.+.+.+..+++++++.. .+++++++||
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPA-IENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGG-GTTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHh-cCCceEEEec
Confidence 99999999999998765 556778888887765 589999999999988888888888988888 7889999998
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.92 E-value=5.4e-25 Score=146.20 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=93.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC----------cccccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~ 74 (153)
.+..++|+|+|.+|+|||||+++|.+..+.....++.+.+........++ .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34579999999999999999999998775544444444333333344443 689999999 66666667
Q ss_pred cccccCc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH--HHHHH-HHHHhcCcee
Q 031777 75 SSYYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKV-YLLLYTGIFF 148 (153)
Q Consensus 75 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 148 (153)
..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+.+++.. +++++ ++.. .++.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCce
Confidence 7777666 9999999999877776542 1222222 4689999999999977655432 33333 3323 57899
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+++||
T Consensus 172 ~~~Sa 176 (195)
T 1svi_A 172 ILFSS 176 (195)
T ss_dssp EECCT
T ss_pred EEEEc
Confidence 99997
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=1.1e-24 Score=150.92 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc------ccccc-
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI------TSSYY- 78 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~- 78 (153)
...++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999998765444344444444444555555 78999999999877653 24555
Q ss_pred -cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 -RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+|++++|+|.++.++.. .|...+.. .+.|+++|+||+|+.+.+.+.. +.+++++. .+++++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~-lg~~vi~~SA 148 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKH-LGIPVVFTSS 148 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHH-HCSCEEECCT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHH-cCCCEEEEEe
Confidence 5899999999999865432 34444433 3689999999999966555543 36778887 7899999997
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.2e-23 Score=149.28 Aligned_cols=146 Identities=16% Similarity=0.013 Sum_probs=108.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeC-CeEEEEEEEeCCCccccc---------
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQD-GKTIKLQIWDTAGQERFR--------- 71 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~--------- 71 (153)
+..+..-.|+++|.+|+|||||+|+|.+..+.. ...+..+..........+ + .++.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 345567899999999999999999999877642 222222222222333344 4 689999999986544
Q ss_pred -ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh-cCceee
Q 031777 72 -TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY-TGIFFF 149 (153)
Q Consensus 72 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 149 (153)
.....+++.+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+.+.+....+..+.+.+.+ ....++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 4556778899999999999998888877777777765 35899999999999755566677778888773 347899
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
++||
T Consensus 160 ~vSA 163 (308)
T 3iev_A 160 PISA 163 (308)
T ss_dssp ECBT
T ss_pred EEeC
Confidence 9997
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=2.2e-24 Score=138.96 Aligned_cols=133 Identities=19% Similarity=0.161 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc-------cccccccccC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF-------RTITSSYYRG 80 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~ 80 (153)
++|+++|++|+|||||++++.+..+. ....++.+.+.....+..++ ..+.+||+||...+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 22233333344555566666 47889999998763 3445567889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 81 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
+|++++|+|.++..+... ..+...++. .+.|+++|+||+|+.+.+ +++++++ . .++ +++++||
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~-~~~~~~~~~Sa 143 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-G-LGFGDPIPTSS 143 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-G-GSSCSCEECBT
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-h-CCCCCeEEEec
Confidence 999999999998544332 112222222 358999999999996542 3344555 4 355 8999997
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=4.9e-25 Score=145.70 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC-----------ccccccccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG-----------QERFRTITSSY 77 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~ 77 (153)
++|+++|++|+|||||++++.+..+.....++.+... ..+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887666555443322 223333 588999999 55666667777
Q ss_pred ccC-ccEEEEEEECCChhhHHHH-HHHHHH---------HHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc
Q 031777 78 YRG-AHGIIIVYDVTDQESFNNV-KQWLNE---------IDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI 146 (153)
Q Consensus 78 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~ 146 (153)
++. ++++++|+++.+..++..+ ..|... +......+.|+++|+||+|+.+.+ .++++++++. .++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~-~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEK-FEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHH-HTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHH-hhh
Confidence 776 7777777777777787766 455542 233333578999999999997654 5667788877 554
Q ss_pred e-------eeecCC
Q 031777 147 F-------FFYPSP 153 (153)
Q Consensus 147 ~-------~~~~Sa 153 (153)
+ +++|||
T Consensus 152 ~~~~~~~~~~~~Sa 165 (190)
T 2cxx_A 152 PLSEIDKVFIPISA 165 (190)
T ss_dssp CGGGHHHHEEECCT
T ss_pred hhhccCCcEEEEec
Confidence 4 699997
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=7.3e-25 Score=143.36 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------ccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 78 (153)
..+|+++|++|+|||||+++|.+.... ....++.+.++....+.+++ ..+.+||+||...+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999976532 12223333444555666777 45889999998654221 11357
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.++.. .+++. .+++++++||
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~-~~~~~~~~SA 147 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEV-NGHALIRLSA 147 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEE-TTEEEEECCT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhc-cCCceEEEeC
Confidence 8999999999999988875 34677777766666799999999999854211 12223 5678999997
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=1.1e-24 Score=150.91 Aligned_cols=135 Identities=17% Similarity=0.107 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc----------cccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT----------ITSSYY 78 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~ 78 (153)
.+|+++|++|+|||||+|+|.+........++.+.+.....+.+++ ..+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999998765444445555556666666777 4799999999887764 445566
Q ss_pred --cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 --RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+|++|+|+|+++.++...+..+ ....+.|+++|+||+|+.+.+.+.. ...++++. .+++++++||
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~------l~~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~-lg~~vi~~SA 148 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ------LFELGKPVVVALNMMDIAEHRGISI-DTEKLESL-LGCSVIPIQA 148 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH------HTTSCSCEEEEEECHHHHHHTTCEE-CHHHHHHH-HCSCEEECBG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH------HHHcCCCEEEEEEChhcCCcCCcHH-HHHHHHHH-cCCCEEEEEC
Confidence 889999999999986554433222 2234689999999999865433322 23456666 7899999997
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=7.5e-24 Score=140.41 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=95.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC----------cccccccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~ 74 (153)
.+..++|+++|++|+|||||++++.+.... ...++.+.+........+. .+.+||+|| ++.+...+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 345689999999999999999999987632 2223333222222333333 578999999 55566666
Q ss_pred cccccCc---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCC--cccCHHHHHHHHHHhcCce
Q 031777 75 SSYYRGA---HGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETAKVYLLLYTGIF 147 (153)
Q Consensus 75 ~~~~~~~---~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~--~~~~~~~~~~~~~~~~~~~ 147 (153)
..++..+ +++++|+|.++..+... +..|+... +.|+++|+||+|+.+. +....+++++++....+++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 6666665 99999999887544332 22333322 6899999999999753 3455566677776656689
Q ss_pred eeecCC
Q 031777 148 FFYPSP 153 (153)
Q Consensus 148 ~~~~Sa 153 (153)
++++||
T Consensus 170 ~~~~Sa 175 (195)
T 3pqc_A 170 IIPTSS 175 (195)
T ss_dssp EEECCT
T ss_pred eEEEec
Confidence 999997
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=3.3e-24 Score=149.86 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=97.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc----------cccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI----------TSSY 77 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~ 77 (153)
.++|+++|++|+|||||+|+|.+........++.+.+.....+...+ ..+.+||+||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999998765444445555555555665655 46889999998876632 2223
Q ss_pred c--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 78 Y--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 78 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+ ..+|++|+|+|.++.+....+..+ +... +.|+++|+||+|+.+.+.+.. ..+++++. .+++++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~-lg~~~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIRI-EIDALSAR-LGCPVIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHH-HTSCEEECCC
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHHH-HHHHHHHh-cCCCEEEEEc
Confidence 2 689999999999986554433333 3322 689999999999865433322 24566766 7899999997
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.90 E-value=2e-24 Score=150.65 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=97.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc------cccccccc-
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------TITSSYYR- 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~- 79 (153)
+.++|+++|++|+|||||+++|.+........++.+.+. ....++. ...+.+||+||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 458999999999999999999998654333334333222 2333343 4679999999998775 34455665
Q ss_pred -CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 -GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+.+.+.+. .+.+++++. .+++++++||
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~-lg~~vi~~SA 145 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYH-LGVPVVATSA 145 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHH-HTSCEEECBT
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHH-cCCCEEEEEc
Confidence 59999999999886543 345444443 468999999999986544444 356778877 7899999997
No 123
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-23 Score=139.81 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=88.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC---cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccC--
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES---YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRG-- 80 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~-- 80 (153)
...++|+++|++|+|||||++++.+..+... ..++.+ .+.....+.+||+||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999998765431 111111 11133578999999999998888888776
Q ss_pred --ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCcc
Q 031777 81 --AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKV 130 (153)
Q Consensus 81 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~ilv~~K~D~~~~~~ 130 (153)
+|++|+|+|++ ++.++.....|+..+... ...+.|+++|+||+|+.+.+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999888887777544 335799999999999976543
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.89 E-value=1.2e-23 Score=146.79 Aligned_cols=137 Identities=20% Similarity=0.142 Sum_probs=100.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc------cccccc--c
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT------ITSSYY--R 79 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 79 (153)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+||+||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999998766444455555556666666676 4699999999987765 455555 6
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 80 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+|++++|+|.++.. ....|...+.... ..|+++|+||+|+.+.+.+..+ ...+++. .+++++++||
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~-lg~~~~~~Sa 147 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKE-LGVPVIPTNA 147 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHH-HSSCEEECBG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHH-cCCcEEEEEe
Confidence 799999999998753 2223333333321 2899999999998654444433 5667777 7899999997
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=3.7e-22 Score=141.04 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--------cc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--------FR 71 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--------~~ 71 (153)
|... -+..+|+++|.+|+|||||+|+|.+..+.. ...+..+.......+..++ .++.+|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence 5554 345789999999999999999999877642 1222222111222233333 6899999999875 34
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHHhcCceeee
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLLYTGIFFFY 150 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 150 (153)
.....+++.+|++++|+|++++.+... ..++..++... .+.|+++|+||+|+.+.+. + .+.++++ .....+++
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~~~ 151 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEPRM 151 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEEEE
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh---cCcCcEEE
Confidence 455667899999999999987654432 22334554433 3689999999999975433 2 2222222 24457899
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
+||
T Consensus 152 iSA 154 (301)
T 1wf3_A 152 LSA 154 (301)
T ss_dssp CCT
T ss_pred EeC
Confidence 987
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=2.6e-23 Score=140.83 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=90.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC--CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----------ccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTI 73 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~ 73 (153)
+..++|+|+|.+|+|||||+++|.+... .....+..+.......+. ......+.+|||||.. .+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG-PAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES-CTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec-CCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4568999999999999999999998762 222222222222222222 1223678999999943 33444
Q ss_pred ccccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HHHHHHHHHHh-----
Q 031777 74 TSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKVYLLLY----- 143 (153)
Q Consensus 74 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~--~~~~~~~~~~~----- 143 (153)
...++.. +|++++|+|.++..+. ....++..+.. .+.|+++|+||+|+.+.+... .++.++....+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 4455555 7889999999875442 22334444443 468999999999997644321 22223333332
Q ss_pred -cCceeeecCC
Q 031777 144 -TGIFFFYPSP 153 (153)
Q Consensus 144 -~~~~~~~~Sa 153 (153)
.+.+++++||
T Consensus 182 ~~~~~~~~~SA 192 (223)
T 4dhe_A 182 AGKLTVQLFSA 192 (223)
T ss_dssp CSCEEEEEEBT
T ss_pred CCCCeEEEeec
Confidence 6788999997
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=2.2e-22 Score=149.74 Aligned_cols=138 Identities=20% Similarity=0.109 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc--------cccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT--------SSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 78 (153)
.++|+++|.+|+|||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47899999999999999999998643 223334444455555666777 679999999987665433 4468
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.+|++|+|+|.+++.+++++..+...+.... +.|+++|+||+|+.+..... .+++.+. ...+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~---~~~l~~~-~~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL---IRAIADG-TGTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH---HHHHHHH-HTSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh---HHHHHhc-CCCceEEEEE
Confidence 89999999999999888765444443333332 68999999999997655442 2344444 3478999997
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.2e-21 Score=140.18 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccc---------cccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRT---------ITSS 76 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~~~~ 76 (153)
...++++++|++|+|||||+++|.+........+..+.......+...+ ..+.+||+||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3568999999999999999999998654222222222223333444444 6799999999754321 1113
Q ss_pred cccCccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+...+ +++.+++.. .+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~-~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKE-KGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHH-TTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHh-cCCCeEEEeC
Confidence 445689999999998877 67777788888877654 6899999999999765433 556667766 7889999997
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=7.8e-22 Score=135.22 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=87.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcce--eeeeEEEEEEEeeCCeEEEEEEEeCCCcc-----------ccc
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDGKTIKLQIWDTAGQE-----------RFR 71 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~ 71 (153)
.+..++|+++|.+|+|||||+++|.+........+ +.+..+....+.+++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34579999999999999999999998776554444 334444455556666 578999999943 333
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccC------HHHHHHHHHHh
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVS------YETAKVYLLLY 143 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~------~~~~~~~~~~~ 143 (153)
.....+++.+|++|+|+|+++.... ...|+..+..... ...|+++|+||+|+.+.+.+. .+.++++++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~- 180 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI- 180 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH-
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH-
Confidence 4444556778999999998754331 1223333322111 235999999999986654433 3456777777
Q ss_pred cCceeee
Q 031777 144 TGIFFFY 150 (153)
Q Consensus 144 ~~~~~~~ 150 (153)
.+..|+.
T Consensus 181 ~~~~~~~ 187 (239)
T 3lxx_A 181 FGDRYCA 187 (239)
T ss_dssp HSSSEEE
T ss_pred cCCEEEE
Confidence 4444443
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=2.6e-22 Score=148.37 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=96.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc----------cccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE----------RFRTIT 74 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~ 74 (153)
+..++|+++|.+|+|||||+|++.+.... ....++.+.+.....+.+++ ..+.+|||||+. .+...+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999986643 23334444444445566677 458999999973 233222
Q ss_pred c-ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH-HH---hcCceee
Q 031777 75 S-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYL-LL---YTGIFFF 149 (153)
Q Consensus 75 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-~~---~~~~~~~ 149 (153)
. .+++.+|++++|+|+++..+++.. .|+..+.. .+.|+++|+||+|+.+.+....++..+.. +. ..+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 367889999999999998887665 45555543 46899999999999876555444433222 22 2578999
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
++||
T Consensus 327 ~~SA 330 (436)
T 2hjg_A 327 FMSA 330 (436)
T ss_dssp ECCT
T ss_pred EEec
Confidence 9998
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=9.4e-22 Score=141.44 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=85.4
Q ss_pred EEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCc
Q 031777 47 IRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNVN 115 (153)
Q Consensus 47 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~ 115 (153)
...+.+++ +.+.+||++|++.++..|..++++++++|||||+++ ..++.+...|+..+... ...+.|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34445554 789999999999999999999999999999999998 45688888888877654 235799
Q ss_pred EEEEEecCCCCCCc---------------ccCHHHHHHHHHH----------hcCceeeecCC
Q 031777 116 KLLVGNKCDLTANK---------------VVSYETAKVYLLL----------YTGIFFFYPSP 153 (153)
Q Consensus 116 ~ilv~~K~D~~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa 153 (153)
++|++||+|+.+++ .++.+++.+++.. ..++.+++|||
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA 325 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 325 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCT
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEEC
Confidence 99999999995432 3678899988872 26788999998
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=1.1e-22 Score=149.16 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc-------c
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-------S 75 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~ 75 (153)
.....++|+|+|..++|||||+++|.+..+. ....+..+.+.....+.+.+.. .+.+|||||+..+.... .
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999987653 2233333444445555555542 78999999998776543 3
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.++..+|++|+|+|.... .....|+..+... +.|+++|+||+|+.+.+.. +.++++++. .+++++++||
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~-~g~~v~~vSA 177 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESR-YEAKVLLVSA 177 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCC-TTCCCCCCSS
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHH-cCCCEEEEEC
Confidence 478889999999998332 2334566666554 6899999999999775544 566667666 7889999997
No 133
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=7.7e-21 Score=131.99 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccccccccc-----
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYR----- 79 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~----- 79 (153)
...++|+++|.+|+|||||+++|.+.... ....+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35799999999999999999999986642 12222223333344455666 58999999999887765555543
Q ss_pred ----CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCCcccCHH
Q 031777 80 ----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVSYE 134 (153)
Q Consensus 80 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~~~~~~~~ 134 (153)
.+|++++|+++++.........|+..+......+ .|+++|+||+|+...+....+
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 7899999999987552233346777777665433 499999999999654444333
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=8.4e-22 Score=146.39 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=100.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC----------cccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG----------QERFRTIT 74 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~ 74 (153)
+..++|+++|.+++|||||++++.+.. ......++.+.+.....+..++ ..+.+||||| ++.+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 456899999999999999999999754 2222333333333344555666 4789999999 45555544
Q ss_pred cc-cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh----cCceee
Q 031777 75 SS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY----TGIFFF 149 (153)
Q Consensus 75 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~----~~~~~~ 149 (153)
.. +++.+|++|+|+|+++..+ +....|...+.. .+.|+++|+||+|+.+.+++..+++.+.++.. .+++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 43 6788999999999987544 233344444443 46899999999999887777777777777652 268999
Q ss_pred ecCC
Q 031777 150 YPSP 153 (153)
Q Consensus 150 ~~Sa 153 (153)
++||
T Consensus 347 ~~SA 350 (456)
T 4dcu_A 347 FMSA 350 (456)
T ss_dssp ECCT
T ss_pred EEcC
Confidence 9998
No 135
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=2.4e-21 Score=137.67 Aligned_cols=105 Identities=17% Similarity=0.251 Sum_probs=83.1
Q ss_pred EEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCC
Q 031777 46 KIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNV 114 (153)
Q Consensus 46 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~ 114 (153)
....+..++ +.+++||++|++.++..|.+|+++++++|||||++ +..++.+...|+..+.... ..+.
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 344455555 88999999999999999999999999999999665 5667777777777765432 3579
Q ss_pred cEEEEEecCCCCCCc----------------ccCHHHHHHHHH----------HhcCceeeecCC
Q 031777 115 NKLLVGNKCDLTANK----------------VVSYETAKVYLL----------LYTGIFFFYPSP 153 (153)
Q Consensus 115 ~~ilv~~K~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~~Sa 153 (153)
|++|++||+|+.+++ .++.+++.+++. . .++.+++|||
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~-~~i~~~~TsA 299 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD-KIIYSHFTCA 299 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTT-SCEEEEECCT
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccccc-CCcEEEEEEe
Confidence 999999999996544 578889998843 3 5678889987
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=2.7e-21 Score=144.52 Aligned_cols=143 Identities=20% Similarity=0.152 Sum_probs=91.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcC--C-----------------------------CCcceeeeeEEEEEEEeeCCe
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSY--I-----------------------------ESYISTIGVDFKIRTVEQDGK 55 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (153)
..+||+++|.+++|||||+++|++... . .+..+..+.+.....+...
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC--
Confidence 469999999999999999999975411 1 1111122222223333333
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN------VKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
...+.+||+||++.|......++..+|++|+|+|+++..++.. ....+..... .. ..|+++|+||+|+.+.+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~-~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG-IHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT-CCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC-CCcEEEEEECcCcccch
Confidence 3689999999999999999999999999999999998654322 1222222222 12 24799999999997654
Q ss_pred ccCHHHHHHHHHHh----c----CceeeecCC
Q 031777 130 VVSYETAKVYLLLY----T----GIFFFYPSP 153 (153)
Q Consensus 130 ~~~~~~~~~~~~~~----~----~~~~~~~Sa 153 (153)
+...++..+....+ . +++++++||
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA 219 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISG 219 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEee
Confidence 44444433333221 1 578999997
No 137
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=3.6e-21 Score=134.42 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=85.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCc-------ceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc------
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESY-------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF------ 70 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------ 70 (153)
+...++|+|+|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.+|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456799999999999999999998865433 222 344454555555555666679999999997322
Q ss_pred -cccc-------cccc-------------cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 71 -RTIT-------SSYY-------------RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 71 -~~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
..+. ..++ ..+|+++++++..+......-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 1111 2222 237899999987653222222334444433 68999999999986433
Q ss_pred ccC--HHHHHHHHHHhcCceeeecCC
Q 031777 130 VVS--YETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+.. .+...+.... .++.++++||
T Consensus 161 e~~~~~~~i~~~l~~-~~i~v~~~sa 185 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQE-HKIKIYEFPE 185 (274)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCCCC--
T ss_pred HHHHHHHHHHHHHHH-cCCeEEcCCC
Confidence 221 2234444445 6788888775
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.3e-21 Score=140.30 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc----cccccccccc---Cc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----FRTITSSYYR---GA 81 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----~~~~~~~~~~---~~ 81 (153)
.+|+++|.+++|||||+++|.+........+..+.......+.+++. ..+.+||+||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999975432121221222222223444431 4789999999643 3334444544 48
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcC-ceeeecCC
Q 031777 82 HGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTG-IFFFYPSP 153 (153)
Q Consensus 82 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 153 (153)
+++|+|+|+++ +.+++.+..|+..+..... .+.|+++|+||+|+.+.+ +..+++++.+.. .+++++||
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSS
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEEC
Confidence 99999999998 7888888889998887653 468999999999986532 345666666222 68999997
No 139
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=141.64 Aligned_cols=142 Identities=23% Similarity=0.340 Sum_probs=81.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-CCCCcc--------eeeeeEEEEEEEeeCCeEEEEEEEeCCCc-------cc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------~~ 69 (153)
+..++|+|+|++|+|||||+++|.+.. +..... ++.+.......+..++..+.+.+||+||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987643 222221 23333333333444566678999999998 55
Q ss_pred cccccc-------ccccCc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 70 FRTITS-------SYYRGA-------------HGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 70 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+..+.. .++... |+++++++.. ..++..+. .++..+ ..+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 665554 444433 3455555432 34444443 333333 346899999999999876
Q ss_pred cccCH--HHHHHHHHHhcCceeeecCC
Q 031777 129 KVVSY--ETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 129 ~~~~~--~~~~~~~~~~~~~~~~~~Sa 153 (153)
+++.. +++.++++. .+++++++||
T Consensus 190 ~ev~~~k~~i~~~~~~-~~i~~~~~Sa 215 (361)
T 2qag_A 190 KERERLKKRILDEIEE-HNIKIYHLPD 215 (361)
T ss_dssp HHHHHHHHHHHHHTTC-C-CCSCCCC-
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEeCCC
Confidence 65554 567777777 7899999997
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=1.3e-20 Score=139.28 Aligned_cols=146 Identities=18% Similarity=0.080 Sum_probs=94.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC-------------------------------CCCcceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY-------------------------------IESYISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (153)
...++|+++|..++|||||+++|++... ..+..+..+.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4569999999999999999999954311 111223344444444454444
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC--
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTAN-- 128 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~-- 128 (153)
..+.+||+||++.|......++..+|++|+|+|+++... |+....+...+......+.| +++++||+|+...
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 689999999999999989999999999999999987532 11111111222222223456 9999999998531
Q ss_pred c----ccCHHHHHHHHHHhc-----CceeeecCC
Q 031777 129 K----VVSYETAKVYLLLYT-----GIFFFYPSP 153 (153)
Q Consensus 129 ~----~~~~~~~~~~~~~~~-----~~~~~~~Sa 153 (153)
. +...++...+++... +++++++||
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA 206 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSG 206 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeec
Confidence 1 122333444544411 457999997
No 141
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=2.4e-21 Score=143.20 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=96.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcC--cCCCC-----------------------------cceeeeeEEEEEEEeeCCe
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADD--SYIES-----------------------------YISTIGVDFKIRTVEQDGK 55 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (153)
..++|+++|..++|||||+++|+.. .+... ..+..+.+.....+..+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-- 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-- 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence 4699999999999999999999863 22111 01222222333333333
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhc----CCC-CcEEEEEecCCCCCC--
Q 031777 56 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SDN-VNKLLVGNKCDLTAN-- 128 (153)
Q Consensus 56 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~-~~~ilv~~K~D~~~~-- 128 (153)
...+.+||+||+.+|......++..+|++|+|+|+++ .+|+....|..+.+.+. ..+ .|+++++||+|+.+.
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 3689999999999999888899999999999999998 67775544333332221 123 469999999999752
Q ss_pred c----ccCHHHHHHHHHHhc----CceeeecCC
Q 031777 129 K----VVSYETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 129 ~----~~~~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
+ +...++.++++.... .++++++||
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA 194 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVA 194 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence 1 223455666766622 278999997
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=8.8e-21 Score=141.59 Aligned_cols=139 Identities=17% Similarity=0.109 Sum_probs=94.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-------CCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------YIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYY 78 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 78 (153)
...++|+++|..++|||||+++|.+.. ...+..+..+.+.....+.+++ ..+.+||+||++.+......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 356999999999999999999999765 2333333333333334444555 6899999999999988888899
Q ss_pred cCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc--ccCHHHHHHHHHHh---cCceeee
Q 031777 79 RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYETAKVYLLLY---TGIFFFY 150 (153)
Q Consensus 79 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~--~~~~~~~~~~~~~~---~~~~~~~ 150 (153)
..+|++|+|+|+++ +++++.+ ..++. .+.|+++++||+|+.++. +...++.++++... .+.++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999987 4444333 22222 257889999999997532 22244555655541 2678999
Q ss_pred cCC
Q 031777 151 PSP 153 (153)
Q Consensus 151 ~Sa 153 (153)
+||
T Consensus 168 vSA 170 (482)
T 1wb1_A 168 ISA 170 (482)
T ss_dssp CCT
T ss_pred EEC
Confidence 997
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=2.9e-20 Score=128.80 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=76.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-CCCCccee-eeeEEEEEEEeeCCeEEEEEEEeCCCccccccccc--------
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-YIESYIST-IGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITS-------- 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------- 75 (153)
...++|+|+|.+|+|||||+++|.+.. +.....++ .+.......+.+++ ..+.+|||||+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999866 33333332 33334444555666 5799999999876543222
Q ss_pred ---ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe-cCCCCC
Q 031777 76 ---SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGN-KCDLTA 127 (153)
Q Consensus 76 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~ilv~~-K~D~~~ 127 (153)
.+++.+|++|+|+|+++.... ...++..+...... ..|.++|+| |+|+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 256889999999999862221 12222333333221 245666665 999974
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.84 E-value=4.4e-20 Score=135.27 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=100.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEE----------------EEee---CCeEEEEEEEe
Q 031777 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIR----------------TVEQ---DGKTIKLQIWD 63 (153)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~~~d 63 (153)
+.....++|+++|.+++|||||+++|.+........ ......... .... ......+.+||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence 345567999999999999999999999744322111 000000000 0000 11236899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CHHHHHHHHH
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKVYLL 141 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~--~~~~~~~~~~ 141 (153)
+||++.+......++..+|++|+|+|+++..++.+...++..+..... .|+++|+||+|+.+..+. ..++.+++..
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987767777777766655433 489999999999754321 1223333332
Q ss_pred H--hcCceeeecCC
Q 031777 142 L--YTGIFFFYPSP 153 (153)
Q Consensus 142 ~--~~~~~~~~~Sa 153 (153)
. ..+++++++||
T Consensus 160 ~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 160 GTWAENVPIIPVSA 173 (403)
T ss_dssp TSTTTTCCEEECBT
T ss_pred hhCCCCCEEEEEEC
Confidence 2 12678999997
No 145
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=3.4e-20 Score=136.98 Aligned_cols=142 Identities=20% Similarity=0.147 Sum_probs=94.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcC--CCCc----------ce---------------------eeeeEEEEEEEee
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSY--IESY----------IS---------------------TIGVDFKIRTVEQ 52 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~----------~~---------------------~~~~~~~~~~~~~ 52 (153)
...++|+++|..++|||||+++|++... .... .+ ..+.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999986431 1000 00 1111222223333
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--
Q 031777 53 DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-- 130 (153)
Q Consensus 53 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-- 130 (153)
++ ..+.+||+||++.|......++..+|++|+|+|+++... .+...++..+... . -.|+++|+||+|+.+..+
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHH
Confidence 33 679999999999998888889999999999999987543 2333344444332 1 236999999999975321
Q ss_pred --cCHHHHHHHHHHhcC-----ceeeecCC
Q 031777 131 --VSYETAKVYLLLYTG-----IFFFYPSP 153 (153)
Q Consensus 131 --~~~~~~~~~~~~~~~-----~~~~~~Sa 153 (153)
...++.+++++. .+ ++++++||
T Consensus 177 ~~~i~~~~~~~~~~-~g~~~~~~~~i~vSA 205 (434)
T 1zun_B 177 FESIKADYLKFAEG-IAFKPTTMAFVPMSA 205 (434)
T ss_dssp HHHHHHHHHHHHHT-TTCCCSEEEEEECCT
T ss_pred HHHHHHHHHHHHHH-hCCCccCceEEEEec
Confidence 123455666666 44 78999997
No 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.84 E-value=1.7e-20 Score=142.76 Aligned_cols=140 Identities=22% Similarity=0.238 Sum_probs=93.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCc--CCCC-----cc------eeeeeEEE--EEEEee---CCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDS--YIES-----YI------STIGVDFK--IRTVEQ---DGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----~~------~~~~~~~~--~~~~~~---~~~~~~~~~~d~~g~~ 68 (153)
+..||+|+|..++|||||+++|+... .... .. ...+.++. ...+.+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998622 1110 00 01111222 122222 5567899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc--
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-- 146 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-- 146 (153)
+|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.+.+ ..+..+++.+. .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~-lg~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDI-VGIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHH-hCCCc
Confidence 999999999999999999999998777766666665553 368999999999997543 22334455555 454
Q ss_pred -eeeecCC
Q 031777 147 -FFFYPSP 153 (153)
Q Consensus 147 -~~~~~Sa 153 (153)
.++++||
T Consensus 156 ~~vi~vSA 163 (599)
T 3cb4_D 156 TDAVRCSA 163 (599)
T ss_dssp TTCEEECT
T ss_pred ceEEEeec
Confidence 4888887
No 147
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.84 E-value=4.5e-21 Score=142.87 Aligned_cols=134 Identities=26% Similarity=0.269 Sum_probs=95.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc-cccc--------ccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE-RFRT--------ITSSY 77 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~-~~~~--------~~~~~ 77 (153)
.++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999986432 23334444445555666776 568999999987 5442 12356
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 78 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 78 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
++.+|++|+|+|++++.+++... +++.+ .+.|+++|+||+|+.+. +..++.+++.. .+++++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~--~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG--TDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT--CSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc--CCCcEEEEEC
Confidence 78899999999999887776543 22332 26899999999999653 44555555432 3468899987
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=1.4e-20 Score=135.29 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=62.6
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKC 123 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~ilv~~K~ 123 (153)
..+.+.+||++|++.++..|..++++++++|||||++ +..++++...|+..+.... ..+.|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889998888888876543 3579999999999
Q ss_pred CCCC
Q 031777 124 DLTA 127 (153)
Q Consensus 124 D~~~ 127 (153)
|+.+
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9854
No 149
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=2.1e-20 Score=134.85 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=76.4
Q ss_pred EEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcE
Q 031777 48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNVNK 116 (153)
Q Consensus 48 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~~ 116 (153)
..+.+++ +.+.+||++|++.++..|..++++++++|||+|+++ ..++.+...|+..+... ...+.|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 3444444 789999999999999999999999999999999999 67898888888887654 3357999
Q ss_pred EEEEecCCCCCCc----------------ccCHHHHHHHHHH----------hcCceeeecCC
Q 031777 117 LLVGNKCDLTANK----------------VVSYETAKVYLLL----------YTGIFFFYPSP 153 (153)
Q Consensus 117 ilv~~K~D~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~~Sa 153 (153)
+|++||+|+.+++ .++.+++.+++.. ...+.+++|||
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA 334 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTA 334 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCT
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEec
Confidence 9999999996432 2778888887621 14678899998
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=4.2e-20 Score=135.58 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=92.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC---cCCCCcce--eeeeEEEEEEEee-------------C--C----eEEEEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD---SYIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQI 61 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~~ 61 (153)
...++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45699999999999999999999853 23333333 3322333222211 1 1 1378999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHH
Q 031777 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYET 135 (153)
Q Consensus 62 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~~ 135 (153)
||+||++.|.......+..+|++|+|+|+++ +++++.+. .+... . ..|+++++||+|+.+.+. ...++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999998888888889999999999985 34443332 23222 2 258999999999976433 33456
Q ss_pred HHHHHHHh--cCceeeecCC
Q 031777 136 AKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 136 ~~~~~~~~--~~~~~~~~Sa 153 (153)
+++++..+ .+.+++++||
T Consensus 160 i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC--
T ss_pred HHHHHhhcCCCCCeEEEeeC
Confidence 66666541 4678999997
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=8e-20 Score=129.17 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=91.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc---------ccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE---------RFRTITS 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~ 75 (153)
-...+|+|+|.+|+|||||+|+|.+..+.. ...+..+.......+..++ ..+.+|||||+. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999876431 1112111111112233344 678999999987 3445556
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 76 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 76 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
..++.+|++++|+|.++ +.....|+. +.....+.|+++++||+|+...+....+...++.+. .++ .++.+||
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~--~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~-~~~~~~i~iSA 156 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVL--NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQ-MNFLDIVPISA 156 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHH--HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTT-SCCSEEEECCT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHH--HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHh-cCcCceEEEEC
Confidence 78899999999999876 222222222 222234689999999999875333334555666655 444 6889987
No 152
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=8.2e-20 Score=125.80 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=84.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCccee--eeeEEEEEEEeeCCeEEEEEEEeCCCcc--------ccccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYIST--IGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITS 75 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~ 75 (153)
...++|+++|.+|+|||||+|++++........++ .+..........++ ..+.+|||||.. .+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45799999999999999999999987654333222 22233334455565 678999999962 2222222
Q ss_pred ccc----cCccEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCcc------cCHHHHHHHHHH
Q 031777 76 SYY----RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKV------VSYETAKVYLLL 142 (153)
Q Consensus 76 ~~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~ilv~~K~D~~~~~~------~~~~~~~~~~~~ 142 (153)
.++ +.+|++|+|+|+++... ....++..+..... .+.|++|++||.|+.+... ...+..+++.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 333 89999999999985221 12233344433322 2589999999999965321 112445667766
Q ss_pred hcCcee
Q 031777 143 YTGIFF 148 (153)
Q Consensus 143 ~~~~~~ 148 (153)
.+..|
T Consensus 175 -~g~~~ 179 (247)
T 3lxw_A 175 -CGGRV 179 (247)
T ss_dssp -TTTCE
T ss_pred -cCCeE
Confidence 44433
No 153
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=7.5e-21 Score=141.55 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=83.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc--CcCCC-----------------------------CcceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD--DSYIE-----------------------------SYISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (153)
...++|+++|..++|||||+++|+. +.+.. +.....+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 21110 0011122222223344444
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC--
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTAN-- 128 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~-- 128 (153)
..+.+||+||++.|......++..+|++|+|+|+++. .+|+....+...+......+.| +++++||+|+.+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 6899999999999999899999999999999999975 2333222233333222223566 9999999999541
Q ss_pred c----ccCHHHHHHHHHHh------cCceeeecCC
Q 031777 129 K----VVSYETAKVYLLLY------TGIFFFYPSP 153 (153)
Q Consensus 129 ~----~~~~~~~~~~~~~~------~~~~~~~~Sa 153 (153)
. +...++.+++++.. .+++++++||
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA 233 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSA 233 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBT
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccc
Confidence 1 12233456666552 1567999997
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=2.1e-20 Score=138.25 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc---------cccccccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF---------RTITSSYY 78 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~ 78 (153)
.+|+++|.+|+|||||+|+|.+.+.. ....++.+.+.....+.+++ ..+.+|||||.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999986643 23344444445556666777 46889999997642 23455678
Q ss_pred cCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH-HHHHHHhcCc-eeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA-KVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~-~~~~~~~~~~-~~~~~Sa 153 (153)
+.+|++|+|+|..+..+... +..|+. . .+.|+++|+||+|+.+. . ..++ .++. . .++ .++++||
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~-lg~~~~~~iSA 147 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-S-LGFGEPIPVSA 147 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-G-GSSCSCEECBT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-h-cCCCCEEEEec
Confidence 99999999999987555432 223332 2 25799999999998432 1 1222 3443 3 355 6889997
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.83 E-value=6e-20 Score=139.59 Aligned_cols=141 Identities=21% Similarity=0.242 Sum_probs=95.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc--CCCC-------------cceeeeeEEEEEEEee---CCeEEEEEEEeCCCc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--YIES-------------YISTIGVDFKIRTVEQ---DGKTIKLQIWDTAGQ 67 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~g~ 67 (153)
++..+|+|+|..++|||||+++|+... .... .....+.......+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 467899999999999999999997521 1110 0011111111112212 456689999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-
Q 031777 68 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI- 146 (153)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~- 146 (153)
.+|.......+..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+...+ ..+..+++.+. .++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~-lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEV-LGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHT-SCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHh-hCCC
Confidence 9999888999999999999999999877777766665543 368999999999997543 12233444444 454
Q ss_pred --eeeecCC
Q 031777 147 --FFFYPSP 153 (153)
Q Consensus 147 --~~~~~Sa 153 (153)
.++++||
T Consensus 157 ~~~vi~vSA 165 (600)
T 2ywe_A 157 PEEAILASA 165 (600)
T ss_dssp GGGCEECBT
T ss_pred cccEEEEEe
Confidence 4888887
No 156
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=1.8e-19 Score=125.59 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=84.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccc---------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS--------- 76 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~--------- 76 (153)
..++|+++|.+|+|||||+++|.+..+.. ...+..+.......+..++ ..+.+|||||...+......
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46999999999999999999999866421 1112222222223334444 68999999998766543321
Q ss_pred cccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEecCCCCCCcccCHHH
Q 031777 77 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDN--VNKLLVGNKCDLTANKVVSYET 135 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~~~ilv~~K~D~~~~~~~~~~~ 135 (153)
....+|++|+|+|++.. ++.. ...|+..+......+ .|+++|+||+|+...+....++
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHH
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHH
Confidence 12468999999998763 3433 346777776654433 6999999999997655444433
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-20 Score=144.06 Aligned_cols=146 Identities=19% Similarity=0.130 Sum_probs=93.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc-------------------------------ceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY-------------------------------ISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (153)
...++|+++|.+++|||||+++|++....... .+..+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34689999999999999999999865321110 11222222233333343
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCcc
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYASDN-VNKLLVGNKCDLTANKV 130 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~~~ilv~~K~D~~~~~~ 130 (153)
..+.+|||||+..+......++..+|++|+|+|+++.. .+.....+...+......+ .|+++|+||+|+.+.++
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 68999999999999998999999999999999998742 1101111222222222223 46999999999976433
Q ss_pred cCHH----HHHHHHHHhc----CceeeecCC
Q 031777 131 VSYE----TAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 131 ~~~~----~~~~~~~~~~----~~~~~~~Sa 153 (153)
...+ +...+..... +++++++||
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA 353 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISG 353 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCT
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeec
Confidence 3333 3333333311 468999997
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=9.1e-21 Score=135.20 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=73.6
Q ss_pred EEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHh-cCCCCcE
Q 031777 48 RTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRY-ASDNVNK 116 (153)
Q Consensus 48 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~~~ 116 (153)
..+..++ +.+++||++|++.++..|..|+++++++|||||++ +..++.+...|+..+... ...+.|+
T Consensus 154 ~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi 231 (340)
T 4fid_A 154 YDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK 231 (340)
T ss_dssp EEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred EEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence 3344443 78999999999999999999999999999999998 678888887777777554 3367999
Q ss_pred EEEEecCCCCCCc---------------ccCHHHHHHHHHH
Q 031777 117 LLVGNKCDLTANK---------------VVSYETAKVYLLL 142 (153)
Q Consensus 117 ilv~~K~D~~~~~---------------~~~~~~~~~~~~~ 142 (153)
+|++||+|+.+++ ..+.+++.+++..
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~ 272 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQ 272 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHH
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHH
Confidence 9999999985421 1357777777654
No 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=4.3e-21 Score=142.55 Aligned_cols=147 Identities=15% Similarity=0.085 Sum_probs=95.1
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcC--cCCCC-----------------------------cceeeeeEEEEEE
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD--SYIES-----------------------------YISTIGVDFKIRT 49 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~ 49 (153)
|..+. ..++|+++|..++|||||+++|++. .+... .....+.+.....
T Consensus 1 M~~~~-~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~ 79 (458)
T 1f60_A 1 MGKEK-SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK 79 (458)
T ss_dssp -CCCC-EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE
T ss_pred CCCCC-ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE
Confidence 54433 4699999999999999999999863 11110 0111222222233
Q ss_pred EeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEec
Q 031777 50 VEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVN-KLLVGNK 122 (153)
Q Consensus 50 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-~ilv~~K 122 (153)
+..++ ..+.+||+||+..|......++..+|++|+|+|+++.. +|+ +....+..+.. .+.| +++++||
T Consensus 80 ~~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK 154 (458)
T 1f60_A 80 FETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNK 154 (458)
T ss_dssp EECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEEC
T ss_pred EecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEc
Confidence 33333 68999999999999988888999999999999998753 221 22222222222 2444 9999999
Q ss_pred CCCCCCcc----cCHHHHHHHHHHhc----CceeeecCC
Q 031777 123 CDLTANKV----VSYETAKVYLLLYT----GIFFFYPSP 153 (153)
Q Consensus 123 ~D~~~~~~----~~~~~~~~~~~~~~----~~~~~~~Sa 153 (153)
+|+.+..+ ...++.+++++... .++++++||
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA 193 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISG 193 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeec
Confidence 99973211 22345556665522 368999997
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.82 E-value=7.1e-20 Score=134.42 Aligned_cols=143 Identities=16% Similarity=0.186 Sum_probs=95.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcC---cCCCCcce--eeeeEEEEEEEee-------------C--C----eEEEEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADD---SYIESYIS--TIGVDFKIRTVEQ-------------D--G----KTIKLQ 60 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 60 (153)
....++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999853 23333333 3322233222211 1 1 136899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--cCHH
Q 031777 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--VSYE 134 (153)
Q Consensus 61 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~--~~~~ 134 (153)
+||+||++.|.......+..+|++|+|+|+++. ++.+.+. .+.... ..|+++++||+|+.+.+. ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999988888888899999999999853 3443332 233222 258999999999976432 2334
Q ss_pred HHHHHHHH--hcCceeeecCC
Q 031777 135 TAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 135 ~~~~~~~~--~~~~~~~~~Sa 153 (153)
+.++++.. ..+.+++++||
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBT
T ss_pred HHHHHHHhcCcCCCeEEEeeC
Confidence 45555543 14678999997
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=1.5e-19 Score=130.66 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc---------ccccccccccC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER---------FRTITSSYYRG 80 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 80 (153)
.|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+.+||++|... +.... ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998765433333444445556677777 5689999999621 22222 24678
Q ss_pred ccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHHHHHh--cCceeeecCC
Q 031777 81 AHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 81 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~Sa 153 (153)
+|++++|+|++++. .......|...+......+.|+++|+||+|+.+... ...+.+..++... .+..++++||
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISA 335 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 99999999999876 556666677667666545689999999999865331 1112333344442 2346788887
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=1.3e-20 Score=139.80 Aligned_cols=133 Identities=18% Similarity=0.218 Sum_probs=82.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc--------ccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI--------TSSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 78 (153)
.++|+++|++|+|||||+|+|.+.... ....++.+.++....+.+++ ..+.+|||||...+... ...++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 478999999999999999999975432 22223333333334455677 56899999997655432 23367
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..+|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+.+.+.+. ..+++ ....+++++||
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~---~~~~~~i~iSA 365 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYP---ENITQIVHTAA 365 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCC---TTCCCEEEEBT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHh---ccCCcEEEEEC
Confidence 88999999999998766544 33444442 26999999999997654433 11111 13567788886
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=1.5e-19 Score=132.21 Aligned_cols=142 Identities=14% Similarity=0.071 Sum_probs=94.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCc-------CCCC-------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDS-------YIES-------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI 73 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 73 (153)
.++|+++|..++|||||+++|.+.. +... .....+.++......++.....+.+||+||+.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998631 1000 0001112222222233333468899999999999888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCcc---cCHHHHHHHHHHhc----C
Q 031777 74 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV---VSYETAKVYLLLYT----G 145 (153)
Q Consensus 74 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~---~~~~~~~~~~~~~~----~ 145 (153)
...++..+|++|+|+|+++....+....| ..++. .+.| +++++||+|+.+... ...++.+++++.+. .
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 88889999999999999985443333222 33332 2567 789999999974221 22345666776622 3
Q ss_pred ceeeecCC
Q 031777 146 IFFFYPSP 153 (153)
Q Consensus 146 ~~~~~~Sa 153 (153)
++++++||
T Consensus 159 ~~~i~~SA 166 (397)
T 1d2e_A 159 TPIIVGSA 166 (397)
T ss_dssp SCEEECCH
T ss_pred CcEEEeeh
Confidence 68999996
No 164
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=4.2e-19 Score=129.18 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=67.9
Q ss_pred EEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCcEE
Q 031777 49 TVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRY-ASDNVNKL 117 (153)
Q Consensus 49 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~~i 117 (153)
.+.+++ +.+++||++|++.++..|..++++++++|||||+++ ..+|++...|+..+... ...+.|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 344454 789999999999999999999999999999999999 88999999999888765 34579999
Q ss_pred EEEecCCCCCC
Q 031777 118 LVGNKCDLTAN 128 (153)
Q Consensus 118 lv~~K~D~~~~ 128 (153)
||+||+|+.++
T Consensus 289 LvgNK~DL~~~ 299 (402)
T 1azs_C 289 LFLNKQDLLAE 299 (402)
T ss_dssp EEEECHHHHHH
T ss_pred EEEEChhhhhh
Confidence 99999998654
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=9e-20 Score=133.68 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=96.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC--------cCCCC---------cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD--------SYIES---------YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
...++|+++|..++|||||+++|.+. .+... .....+.+.....+ +.....+.+||+||++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY--ETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEE--ECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEe--ccCCeEEEEEECCChH
Confidence 34699999999999999999999862 11100 01122222222333 3333678999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCcc---cCHHHHHHHHHHhc
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV---VSYETAKVYLLLYT 144 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~---~~~~~~~~~~~~~~ 144 (153)
+|......++..+|++|+|+|+++... .+...++..+.. .+.| +++++||+|+.+... ...++.+++++.+.
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888889999999999999987644 334445544443 2567 899999999974222 12335566666622
Q ss_pred ----CceeeecCC
Q 031777 145 ----GIFFFYPSP 153 (153)
Q Consensus 145 ----~~~~~~~Sa 153 (153)
.++++++||
T Consensus 163 ~~~~~~~~i~~SA 175 (405)
T 2c78_A 163 FPGDEVPVIRGSA 175 (405)
T ss_dssp SCTTTSCEEECCH
T ss_pred ccccCCCEEEccH
Confidence 368999996
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=8.9e-22 Score=147.88 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=97.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 86 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 86 (153)
+.++|+++|.+++|||||+++|.+..+.....++.+.++....+..++ ...+.+|||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 467899999999999999999998665544445544444433333321 1368899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cCHHHHHHH---HHHh-cCceeeecCC
Q 031777 87 VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKVY---LLLY-TGIFFFYPSP 153 (153)
Q Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~Sa 153 (153)
|+|+++..+.+.. ..+......+.|+++++||+|+.+.+. ...++...+ +..+ ..++++++||
T Consensus 82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSA 149 (537)
T 3izy_P 82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSA 149 (537)
T ss_dssp ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCS
T ss_pred EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEEC
Confidence 9999986554333 233333345689999999999965321 111222221 1111 2457899997
No 167
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=2e-20 Score=138.36 Aligned_cols=134 Identities=17% Similarity=0.125 Sum_probs=80.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCC-CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc--------cccccccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIE-SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE--------RFRTITSSYY 78 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~ 78 (153)
.++|+++|.+|+|||||+|+|.+..... ...+..+.+.......+.+ ..+.+|||||.. .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 3689999999999999999999866532 2223333233333333444 579999999985 4555667788
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCc-eeeecCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGI-FFFYPSP 153 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 153 (153)
+.+|++|+|+|..+..+.... .+...++ ..+.|+++|+||+|+.+.+. ++.++. . .++ .++++||
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~-lg~~~~~~iSA 146 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE-EVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-S-LGFGEPYPISG 146 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH-HHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-G-GSSCCCEECBT
T ss_pred HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-H-cCCCCeEEEeC
Confidence 999999999999887665432 2222232 34689999999999865321 111222 2 233 6788887
No 168
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=7.8e-19 Score=129.92 Aligned_cols=142 Identities=22% Similarity=0.208 Sum_probs=89.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----------
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT---------- 74 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------- 74 (153)
+..++++++|++|+|||||+++|.+.... ....++.+.+.....+.+++. .+.+||++|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999986531 222333333344455667774 67899999974332211
Q ss_pred --cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH-HH---hcCcee
Q 031777 75 --SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYL-LL---YTGIFF 148 (153)
Q Consensus 75 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~-~~---~~~~~~ 148 (153)
..++..+|++++++|..+..+.... .+...+. ..+.|+++|+||+|+.+.+....++..+.. +. ...+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2345678999999999876665442 2222222 246899999999999776555554443222 22 246789
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+++||
T Consensus 332 ~~~SA 336 (439)
T 1mky_A 332 IFTSA 336 (439)
T ss_dssp EECBT
T ss_pred EEEEC
Confidence 99997
No 169
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=3.2e-19 Score=128.94 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=95.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeee---eEEE-------------------------------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIG---VDFK------------------------------------- 46 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~------------------------------------- 46 (153)
...+|+|+|++|||||||+++|.+..+.+......+ ....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 346999999999999999999999765322221110 0000
Q ss_pred --------------EEEEeeCCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCChhhHHHH
Q 031777 47 --------------IRTVEQDGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNV 99 (153)
Q Consensus 47 --------------~~~~~~~~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 99 (153)
...+... ....+.+||+||...+ ..+...++..+|++|++++..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0001011 1135889999998765 456677889999999999876533221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 100 KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 100 ~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
..|+..++...+.+.|+++|+||+|+.+......+.++.+... .+.+|+++|+
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 242 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFK-LKYPWVGVVN 242 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSC-CSSCCEEECC
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCcccc-ccCCeEEEEE
Confidence 3455566666666789999999999987655555555555444 6778888775
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=1.7e-20 Score=143.00 Aligned_cols=142 Identities=19% Similarity=0.200 Sum_probs=73.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-------------------------------CCCCcceeeeeEEEEEEEeeCC
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YIESYISTIGVDFKIRTVEQDG 54 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (153)
...++|+++|.+++|||||+++|++.. ...+..++.+.+.....+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-- 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-- 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence 456899999999999999999996421 01111222232233333333
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEecCCCCC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA 127 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~ 127 (153)
....+.+|||||+..|......++..+|++|+|+|+++.. .+ .+....+..+.. .+.| +++|+||+|+.+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 3478999999999999999999999999999999998532 11 111122222222 2344 999999999865
Q ss_pred CcccC----HHHHHHHH-HHhcC-----ceeeecCC
Q 031777 128 NKVVS----YETAKVYL-LLYTG-----IFFFYPSP 153 (153)
Q Consensus 128 ~~~~~----~~~~~~~~-~~~~~-----~~~~~~Sa 153 (153)
..+.. .++...+. .. .+ ++++++||
T Consensus 330 ~~~~~~~~i~~el~~~l~~~-~g~~~~~~~ii~iSA 364 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKM-VGFKTSNVHFVPISA 364 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTT-SCCCGGGEEEEEECS
T ss_pred ccHHHHHHHHHHHHHHHHHh-hCCCccceEEEEEec
Confidence 22211 22333333 22 23 47899997
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=3.6e-19 Score=128.96 Aligned_cols=128 Identities=9% Similarity=0.056 Sum_probs=90.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 89 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 89 (153)
+|+++|..++|||||+++|. ....+.+.....+..++ ..+.+||+||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 12222223333444444 579999999999998878888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-cCCCCCCcccC--HHHHHHHHHHh--cCceeee--cCC
Q 031777 90 VTDQESFNNVKQWLNEIDRYASDNVNK-LLVGN-KCDLTANKVVS--YETAKVYLLLY--TGIFFFY--PSP 153 (153)
Q Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~~~~-ilv~~-K~D~~~~~~~~--~~~~~~~~~~~--~~~~~~~--~Sa 153 (153)
+ ...+.+...++..+... +.|. ++++| |+|+ +.+.+. .++.++++... ..+++++ +||
T Consensus 93 -~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA 158 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNK 158 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCT
T ss_pred -C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 4 34445555555555432 4566 88999 9999 533222 24555665541 2478999 997
No 172
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=1.3e-20 Score=140.58 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=92.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 85 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 85 (153)
++.++|+++|..++|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987554433333333222222333344 46889999999999999999999999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc--ccCHH--HHHHHHHHh-cCceeeecCC
Q 031777 86 IVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYE--TAKVYLLLY-TGIFFFYPSP 153 (153)
Q Consensus 86 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~--~~~~~--~~~~~~~~~-~~~~~~~~Sa 153 (153)
+|+|+++ +++.+.+ ..+ ...+.|+++++||+|+.+.+ .+..+ +...+++.+ ..++++++||
T Consensus 80 LVVda~~g~~~qT~e~l----~~~---~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHA---KAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHH---HHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHHHHH----HHH---HhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 9999987 3343322 122 22468999999999996421 11111 000111221 1368999997
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.78 E-value=1.6e-18 Score=131.95 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=79.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc----ceeeeeEEEEEEEe--------------eCCeEEEEEEEeCCCcc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY----ISTIGVDFKIRTVE--------------QDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~--------------~~~~~~~~~~~d~~g~~ 68 (153)
+.++|+|+|..++|||||+++|.+..+.... +++.+ ....... .+.....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig--~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIG--ATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTT--EEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccC--eEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4579999999999999999999875443221 11211 1111110 00011258999999999
Q ss_pred cccccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 69 RFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
.|..++..++..+|++|+|+|+++ +.+++.+.. ++ ..+.|+++++||+|+..
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~---~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HH---HTTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HH---HcCCeEEEEeccccccc
Confidence 999999999999999999999998 666554432 22 24689999999999964
No 174
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=3.7e-19 Score=133.96 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=84.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC----------------------CCcceeeeeEEEEEEEeeCCeEEEEEEEe
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI----------------------ESYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 63 (153)
....+|+|+|.+++|||||+++|+..... .+..+..+.......+.+.+ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 45789999999999999999999621100 00001112222234444555 7899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|||+.++......+++.+|++|+|+|+++..+......|.. ....+.|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~----~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV----CRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH----HHTTTCCEEEEEECTTSCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH----HHHcCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999998766655544432 2234689999999999964
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=1.7e-19 Score=133.98 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=74.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCC--------cccccccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAG--------QERFRTITSSYY 78 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~ 78 (153)
...+|+|+|.+|+|||||+|+|.+..+... ..+.+.+..............+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 357999999999999999999998664311 12223333333333444446899999999 566666777888
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 79 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 79 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+|++|+|+|..+.-+... ..+...++ ..+.|+++|+||+|+.+
T Consensus 101 ~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC----
T ss_pred hhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECccchh
Confidence 99999999999876333222 12222222 24689999999999864
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.76 E-value=4e-18 Score=136.22 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=94.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc-------CCC-------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS-------YIE-------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 71 (153)
...++|+++|..++|||||+++|.+.. +.. ......+.++....+.++.....+.+||+||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 346999999999999999999998631 000 000111212221122233344689999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCcc---cCHHHHHHHHHHhc---
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV---VSYETAKVYLLLYT--- 144 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~ilv~~K~D~~~~~~---~~~~~~~~~~~~~~--- 144 (153)
.....++..+|++|+|+|+++.... +...++..+... +.| +++++||+|+.+..+ ...++.+++++...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8888899999999999999875332 333344444432 467 899999999975322 12345666776622
Q ss_pred -CceeeecCC
Q 031777 145 -GIFFFYPSP 153 (153)
Q Consensus 145 -~~~~~~~Sa 153 (153)
.++++++||
T Consensus 450 ~~vp~IpvSA 459 (1289)
T 3avx_A 450 DDTPIVRGSA 459 (1289)
T ss_dssp TTCCEEECCS
T ss_pred cceeEEEEEe
Confidence 368999997
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.75 E-value=2.1e-18 Score=121.48 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=85.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc------ceeee--------------------eEE--------------
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------ISTIG--------------------VDF-------------- 45 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~-------------- 45 (153)
...++|+|+|.+|+|||||+|+|.+..+.+.. .|+.. .+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35689999999999999999999987763211 12100 000
Q ss_pred -----------EEEEEeeCCeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCChhhHHHHH
Q 031777 46 -----------KIRTVEQDGKTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVK 100 (153)
Q Consensus 46 -----------~~~~~~~~~~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~ 100 (153)
....+... ....+.+|||||.. .+..+...++..++.+| +|+|.++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000011 02578999999964 23345566777887666 799988754433322
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH--hcCceeeecCC
Q 031777 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL--YTGIFFFYPSP 153 (153)
Q Consensus 101 ~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa 153 (153)
.++..+ ...+.|+++|+||+|+.+......+..+..... ....+++++||
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA 234 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCC
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCCh
Confidence 333333 345689999999999976544333322211001 01246788887
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=2.4e-17 Score=127.67 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhcCc--CC------C----------CcceeeeeEEEEEEEeeCCeEEEEEEEe
Q 031777 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDS--YI------E----------SYISTIGVDFKIRTVEQDGKTIKLQIWD 63 (153)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d 63 (153)
+...++..+|+|+|..++|||||+++|+... +. . +.....+.......+.+.+ +.+.+||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEE
Confidence 4556778999999999999999999998421 10 0 0011111122233344444 7899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
|||+.++...+..++..+|++|+|+|.++..+++....|.... ..+.|+++|+||+|+...
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~----~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE----KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH----HTTCCEEEEEECTTSTTC
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH----HcCCCEEEEEECCCcccC
Confidence 9999999998999999999999999999877776665554322 236899999999998653
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.74 E-value=3.1e-18 Score=121.54 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=47.2
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 031777 57 IKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC 123 (153)
Q Consensus 57 ~~~~~~d~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~ 123 (153)
..+.+|||||... +......+++.+|++++|+|..+....... +...++.....+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~--~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD--ALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS--HHHHHHHHCSSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH--HHHHHHHhCCCCCcEEEEEcCc
Confidence 4689999999753 344556678899999999997432211111 1122223334568999999999
Q ss_pred CCCCCcc
Q 031777 124 DLTANKV 130 (153)
Q Consensus 124 D~~~~~~ 130 (153)
|+.+...
T Consensus 209 Dl~~~~~ 215 (315)
T 1jwy_B 209 DLMDKGT 215 (315)
T ss_dssp TSSCSSC
T ss_pred ccCCcch
Confidence 9976443
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=6.8e-18 Score=113.13 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=82.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc----------ccccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER----------FRTITSS 76 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~~ 76 (153)
...+|+++|++|+|||||++++.+..+.....++.+.......+.+++ .+.+||+||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 357899999999999999999998664333333333322222233333 477999999742 1222223
Q ss_pred cc---cCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCC--cccCHHHHHHHHHHhc-Ccee
Q 031777 77 YY---RGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETAKVYLLLYT-GIFF 148 (153)
Q Consensus 77 ~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~--~~~~~~~~~~~~~~~~-~~~~ 148 (153)
++ ..++++++++|+.++.+... +..|+. ..+.|+++++||+|+... ++...+.+++++.+.. .+.+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 33 46799999999987655432 222322 235799999999998653 2233456667776622 3567
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+++||
T Consensus 176 ~~~Sa 180 (210)
T 1pui_A 176 ETFSS 180 (210)
T ss_dssp EECBT
T ss_pred EEEee
Confidence 88886
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=6e-17 Score=122.06 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=79.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCC----------------------cceeeeeEEEEEEEeeCCeEEEEEEEe
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIES----------------------YISTIGVDFKIRTVEQDGKTIKLQIWD 63 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d 63 (153)
...++|+|+|.+++|||||+++|+....... .....+.......+.+.+ ..+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 4579999999999999999999986321100 000011111122333444 7899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
|||+.+|......++..+|++|+|+|+.+..... ... .++.....+.|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~---~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRK---LMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHH---HHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHH---HHHHHHHcCCCEEEEEcCcCCccc
Confidence 9999999988888999999999999998754322 122 222233457899999999999654
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=3.6e-17 Score=119.44 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeee--EEEEEEE-------------------eeCC-eEEEEEEEeCCC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGV--DFKIRTV-------------------EQDG-KTIKLQIWDTAG 66 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~~-~~~~~~~~d~~g 66 (153)
++|+++|.+|+|||||+|+|.+........|..+. ......+ .+++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999986532222221111 1111111 1122 247899999999
Q ss_pred cccc----ccccc---ccccCccEEEEEEECCCh
Q 031777 67 QERF----RTITS---SYYRGAHGIIIVYDVTDQ 93 (153)
Q Consensus 67 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 93 (153)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 22222 356889999999999874
No 183
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=2.1e-17 Score=130.38 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=85.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCC----------------Ccce--eeeeEEEEEEEe------------eCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIE----------------SYIS--TIGVDFKIRTVE------------QDG 54 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~ 54 (153)
.++.+||+|+|..++|||||+++|+...... +..+ +.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998631100 0011 111111112222 234
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 55 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
..+.+.+|||||+.+|...+..+++.+|++|+|+|+.+..+++....|.... ..+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 4789999999999999999999999999999999999987877765565433 2368999999999985
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=119.36 Aligned_cols=142 Identities=16% Similarity=0.222 Sum_probs=81.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc--------ceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccc-------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY--------ISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR------- 71 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~------- 71 (153)
..++|+|+|++|+|||||++.|.+....... .++.........+...+....+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3478999999999999999999986542111 1111111111111223333578999999975431
Q ss_pred c------------------cccccccCccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q 031777 72 T------------------ITSSYYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV 131 (153)
Q Consensus 72 ~------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~ 131 (153)
. +.+.++.++++.+++|....- .++.... .|+..+. .+.|+++|+||+|+...+++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 1 123345555544444443321 2344333 4555553 26899999999999766665
Q ss_pred CH--HHHHHHHHHhcCceeeecCC
Q 031777 132 SY--ETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~Sa 153 (153)
.. +++++++.. .++.++++||
T Consensus 186 ~~~k~~i~~~~~~-~~i~~~~~sa 208 (418)
T 2qag_C 186 QQFKKQIMKEIQE-HKIKIYEFPE 208 (418)
T ss_dssp HHHHHHHHHHHHH-HTCCCCCCC-
T ss_pred HHHHHHHHHHHHH-cCCeEEeCCC
Confidence 54 677788877 7899999886
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=4.7e-17 Score=126.13 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=84.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhc--CcCCCCc----------------ceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFAD--DSYIESY----------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
.++..+|+|+|.+++|||||+++|+. +.+.... .+..+.......+.+++ ..+.+|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 35679999999999999999999985 2211000 01111111123344454 6899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+.++......+++.+|++|+|+|.++..+......|.. +.. .+.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 99999888999999999999999998777666555543 322 36899999999999653
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=1.5e-17 Score=117.54 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=78.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcC-cCCCCcc--------eeeeeEEEEEEEeeCCeEEEEEEEeCCCc-------cc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADD-SYIESYI--------STIGVDFKIRTVEQDGKTIKLQIWDTAGQ-------ER 69 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------~~ 69 (153)
+..++|+|+|++|+|||||+++|.+. .++.... ++............++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998764 3332221 11111111112222344578999999997 44
Q ss_pred cccccc-------ccccC-------------ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 70 FRTITS-------SYYRG-------------AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 70 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
+..+.. .++.. +++++++.+.+. .+++... .+.++... .+.++++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 444433 33322 234555554332 1233332 13344433 357999999999997654
Q ss_pred c--cCHHHHHHHHHHhcCceeeecCC
Q 031777 130 V--VSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
+ +..++++++++. .++.++++||
T Consensus 172 e~~~~~~~~~~~~~~-~~~~~~e~Sa 196 (301)
T 2qnr_A 172 ERERLKKRILDEIEE-HNIKIYHLPD 196 (301)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCCCCC-
T ss_pred HHHHHHHHHHHHHHH-cCCeEEecCC
Confidence 4 345678888888 7899999997
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=4.2e-16 Score=120.97 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcCc--CCCC----------------cceeeeeEEEEEEEeeC-----CeEEEEE
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDS--YIES----------------YISTIGVDFKIRTVEQD-----GKTIKLQ 60 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~ 60 (153)
..++..+|+|+|..++|||||+++|+... +... .....+.......+.++ +..+.+.
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 34567999999999999999999997521 1100 00111112222233332 2347899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 61 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+|||||+.+|...+..+++.+|++|+|+|+++....+....|.. ....+.|+++++||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~----~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ----ANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH----HHHcCCCEEEEEeCCCcccc
Confidence 99999999999889999999999999999998655544444432 22346899999999998653
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.70 E-value=6.4e-17 Score=125.39 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=79.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCC-cceeeee--EE--------------------------------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIES-YISTIGV--DF-------------------------------------- 45 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~--~~-------------------------------------- 45 (153)
..++|+|+|.+|+|||||+|+|.+....+. ..|+... .+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999998664321 1222100 00
Q ss_pred -------------EEEEEeeCCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHH
Q 031777 46 -------------KIRTVEQDGKT--IKLQIWDTAGQER---FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID 107 (153)
Q Consensus 46 -------------~~~~~~~~~~~--~~~~~~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 107 (153)
....+.++... ..+.+|||||... .......+++.+|++|+|+|.+++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00011111100 2588999999654 33455678899999999999998877766655544432
Q ss_pred HhcCCCCcEEEEEecCCCCCC
Q 031777 108 RYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 108 ~~~~~~~~~ilv~~K~D~~~~ 128 (153)
..+.|+++|+||+|+...
T Consensus 228 ---~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 228 ---GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ---TSCCCEEEEEECGGGGGG
T ss_pred ---hhCCCEEEEEECcccccc
Confidence 235789999999998644
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.69 E-value=1.1e-16 Score=123.65 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=81.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc------------------ceeeeeEEEEEEEeeCCeEEEEEEEeCCC
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESY------------------ISTIGVDFKIRTVEQDGKTIKLQIWDTAG 66 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 66 (153)
.+...+++|+|..|+|||||+++|.+....... ....+.......+...+ +.+.+||+||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence 345689999999999999999999843221000 00112222223333443 7899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+.++......++..+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+.
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 99998888999999999999999876544332 233333332 368999999999986
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=2.2e-17 Score=116.65 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=94.9
Q ss_pred HHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-hHHHHH
Q 031777 23 CLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVK 100 (153)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 100 (153)
+|+.++..+.+. ..+.|+.+..+. ..+..++ ++.+||+ ++.+..+++.+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577888878887 777888884443 3332222 6899999 8899999999999999999999999987 788888
Q ss_pred HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcC-ceeeecCC
Q 031777 101 QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTG-IFFFYPSP 153 (153)
Q Consensus 101 ~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 153 (153)
.|+..++. .+.|+++|+||+|+.+.+++ ++++++++.+.. +.+++|||
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SA 154 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSA 154 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEEC
Confidence 89987765 36899999999999765544 567777776332 89999998
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.68 E-value=2.5e-17 Score=124.67 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=80.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcCC---CCcceeeeeEEEEEE--------------------------------
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSYI---ESYISTIGVDFKIRT-------------------------------- 49 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~-------------------------------- 49 (153)
.+..++|+|+|.+|+|||||+|+|++..+. ....++.........
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 456789999999999999999999987753 122222111000000
Q ss_pred ----EeeCCe-EEEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 031777 50 ----VEQDGK-TIKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN 113 (153)
Q Consensus 50 ----~~~~~~-~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 113 (153)
+.+++. ...+.+|||||... +......++..+|++|+|+|+++.........++..+. ..+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcC
Confidence 000000 02588999999864 33455667888999999999987655555555655553 335
Q ss_pred CcEEEEEecCCCCCC
Q 031777 114 VNKLLVGNKCDLTAN 128 (153)
Q Consensus 114 ~~~ilv~~K~D~~~~ 128 (153)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 799999999998653
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=4.1e-16 Score=112.18 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCccccc--
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR-- 71 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~-- 71 (153)
++|+++|.+|+|||||+|+|.+........|..+.+.....+.+++. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986632222222222222122333332 1479999999987543
Q ss_pred --cccc---ccccCccEEEEEEECCC
Q 031777 72 --TITS---SYYRGAHGIIIVYDVTD 92 (153)
Q Consensus 72 --~~~~---~~~~~~~~~i~v~d~~~ 92 (153)
.+.. .+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2222 24688999999999985
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=3.3e-16 Score=114.77 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccc----ccccccc---ccCcc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF----RTITSSY---YRGAH 82 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----~~~~~~~---~~~~~ 82 (153)
.|+++|++|||||||++++.+........+..+.......+..++ ...+.+||+||.... ..+...+ ...++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987532111111111111222333333 246889999997421 1122222 34689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCcccCHHHHHHHHHHhcCceeeecCC
Q 031777 83 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKVYLLLYTGIFFFYPSP 153 (153)
Q Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (153)
.+++++|++ ...+.++..+..++..... ...|.++|+||+|+... ...++..+.... .+++++.+||
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~-~g~~vi~iSA 306 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAR-EGLAVLPVSA 306 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHT-TTSCEEECCT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHh-cCCeEEEEEC
Confidence 999999998 5667777777666655432 24689999999998653 223444455555 5788999997
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=3.2e-15 Score=113.14 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=83.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhcCcC----------------------CCCcceeeeeEEEEEEEeeCCeEEEEEEE
Q 031777 5 YDYLFKLLLIGDSGVGKSCLLLRFADDSY----------------------IESYISTIGVDFKIRTVEQDGKTIKLQIW 62 (153)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (153)
..+..||+|+|..++|||||..+|+.... ..+.....+.......+.+++ ..+.|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence 34679999999999999999999963211 111112222222344555666 789999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 63 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|||||.+|.......++-+|++|+|+|..+--.-+....|.... ..+.|.+++.||+|+..
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~----~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR----MRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH----HhCCceEEEEecccchh
Confidence 99999999999999999999999999998754444444443333 34789999999999864
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.60 E-value=1.3e-16 Score=115.08 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=70.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCc------ceeee--------------------eEE---------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESY------ISTIG--------------------VDF--------------- 45 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~--------------- 45 (153)
..++|+|+|.+++|||||+|+|.+..+.+.. .|+.. .+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987763221 12100 000
Q ss_pred ----------EEEEEeeCCeEEEEEEEeCCCccc-------------ccccccccccCcc-EEEEEEECCChhhHHHHHH
Q 031777 46 ----------KIRTVEQDGKTIKLQIWDTAGQER-------------FRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQ 101 (153)
Q Consensus 46 ----------~~~~~~~~~~~~~~~~~d~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~ 101 (153)
....+... ....+.+|||||... +..+...++...+ +++++.+.+.. +... .
T Consensus 110 g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~ 185 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D 185 (353)
T ss_dssp TTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred ccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence 00011111 125789999999632 3345556666665 44555565432 2111 2
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 102 WLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 102 ~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
+...++...+.+.|+++|+||+|+.+..
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcc
Confidence 3334444445678999999999997543
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=4.5e-14 Score=102.01 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcce--eeeeEEEEEEEeeCC-------------------eEEEEEEEeCCCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYIS--TIGVDFKIRTVEQDG-------------------KTIKLQIWDTAGQ 67 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~d~~g~ 67 (153)
++|+++|.+|+|||||+++|.+........+ |........ .+++ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6799999999999999999987542111111 111111111 1221 2357999999998
Q ss_pred ccccc----cc---cccccCccEEEEEEECCC
Q 031777 68 ERFRT----IT---SSYYRGAHGIIIVYDVTD 92 (153)
Q Consensus 68 ~~~~~----~~---~~~~~~~~~~i~v~d~~~ 92 (153)
..... +. ...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 65432 21 224688999999999975
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=3.2e-14 Score=110.70 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=82.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCc--------CC----------CCcceeeeeEEEEEEEeeCC-----eEEEEEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDS--------YI----------ESYISTIGVDFKIRTVEQDG-----KTIKLQIW 62 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 62 (153)
++..||+|+|..++|||||..+|+... .. .+.....+.......+.+.+ .++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 578999999999999999999987421 11 11111222222223333332 35889999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 63 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|||||.+|.......++-+|++|+|+|+.+--.-+....|....+. +.|.+++.||+|+..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999999875444444445444443 789999999999854
No 198
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.1e-14 Score=102.95 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=87.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccccccc-------cccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTI-------TSSYYR 79 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~~ 79 (153)
...+|+++|.||+|||||+|+|++........|..+.+.....+.+++ .++.+.|+||...-... .-..++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999998665444456666666666677777 67899999996422111 112457
Q ss_pred CccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------CcccCHHHHHHHHHH
Q 031777 80 GAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTA--------NKVVSYETAKVYLLL 142 (153)
Q Consensus 80 ~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~--------~~~~~~~~~~~~~~~ 142 (153)
.+|++++|+|.+++..-. .+...+..+.... ...|.+++.||.|... ....+.++.+.+...
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~ 219 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSE 219 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHH
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHH
Confidence 799999999999864322 2222222221111 2468889999999742 123456666655544
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.51 E-value=1.2e-14 Score=98.11 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=79.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEE--------------EEEEEee----------------CCeE
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDF--------------KIRTVEQ----------------DGKT 56 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 56 (153)
...+++++|.+|+|||||+++|...............+. ....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999986422111111111110 1111111 0112
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA 136 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~ 136 (153)
..+.+||++|..... ..+....+.+++|+|+.+.... ...+... .+.|+++|+||+|+.+.+....++.
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 567899998851110 1111246789999998764321 1111111 1368999999999865434566777
Q ss_pred HHHHHHh-cCceeeecCC
Q 031777 137 KVYLLLY-TGIFFFYPSP 153 (153)
Q Consensus 137 ~~~~~~~-~~~~~~~~Sa 153 (153)
.++++.. +.++++++||
T Consensus 178 ~~~~~~~~~~~~i~~~Sa 195 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDL 195 (221)
T ss_dssp HHHHHHHCTTSEEEECBT
T ss_pred HHHHHHhCCCCeEEEeec
Confidence 7766653 3578999997
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.46 E-value=3.8e-16 Score=105.80 Aligned_cols=136 Identities=20% Similarity=0.200 Sum_probs=75.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEE------------EEEEeeC-CeE-----------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFK------------IRTVEQD-GKT----------------- 56 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 56 (153)
..++|+++|.+|+|||||++++....+.....++...++. ...+..+ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999976554444444443322 1111111 110
Q ss_pred --EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q 031777 57 --IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE 134 (153)
Q Consensus 57 --~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~ 134 (153)
..+.+.|++|.-... ..+-...+..+.+.+..+...... .....+ +.|.++|+||+|+.+.+.+..+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 134555555521100 011112344556666422111000 001111 3678999999998654446777
Q ss_pred HHHHHHHHh-cCceeeecCC
Q 031777 135 TAKVYLLLY-TGIFFFYPSP 153 (153)
Q Consensus 135 ~~~~~~~~~-~~~~~~~~Sa 153 (153)
++.++++.+ ++++++++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa 205 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSL 205 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEEEe
Confidence 777777753 3689999997
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.41 E-value=1.6e-14 Score=111.17 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCc--CCC----------------CcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDS--YIE----------------SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
..||.|+|..++|||||..+|+... ... +.....+.......+.+++ ..+.++|||||.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence 4689999999999999999987421 110 0011122222223333444 6799999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 70 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 70 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
|.......++-+|++|+|+|+.+--.-+....|....+. +.|.+++.||+|+..
T Consensus 80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEecccccc
Confidence 999999999999999999999864333333344433333 678899999999854
No 202
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=98.58 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=50.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCccccc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR 71 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~ 71 (153)
...+|+++|.+|+|||||+|+|.+........|+.+.+.....+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3478999999999999999999987653333343333333334444432 2359999999977543
Q ss_pred c-------cccccccCccEEEEEEECCChhh
Q 031777 72 T-------ITSSYYRGAHGIIIVYDVTDQES 95 (153)
Q Consensus 72 ~-------~~~~~~~~~~~~i~v~d~~~~~s 95 (153)
. ....+++.+|++++|+|+.+..+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 3 33456789999999999986443
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.37 E-value=2.2e-13 Score=98.29 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=51.2
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HH
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YE 134 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~--~~ 134 (153)
+.+.+|||||... .....+..+|++|+|+|.........+. .. -.+.|+++|+||+|+.+..... .+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~~-~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------KG-VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------TT-SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------Hh-HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 6789999999432 2233457899999999987654432221 11 1236899999999985432211 11
Q ss_pred HHHHHHHHhc------CceeeecCC
Q 031777 135 TAKVYLLLYT------GIFFFYPSP 153 (153)
Q Consensus 135 ~~~~~~~~~~------~~~~~~~Sa 153 (153)
+..+....+. +.+++.+||
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHHHhhccccccCCCCceEEEEc
Confidence 1222211111 467899987
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.28 E-value=2.3e-12 Score=92.47 Aligned_cols=60 Identities=22% Similarity=0.142 Sum_probs=38.0
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+.++||||...... .....+|++++|+|......++.+... . .+.|.++|+||+|+.+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~--~------~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG--L------MEVADLIVINKDDGDN 208 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH--H------HHHCSEEEECCCCTTC
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh--h------hcccCEEEEECCCCCC
Confidence 5799999999654433 245789999999998754332111110 0 1357899999999865
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=3.7e-11 Score=93.56 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=72.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcc-eeeee------------------------------------------
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYI-STIGV------------------------------------------ 43 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~------------------------------------------ 43 (153)
..++|+|+|..++|||||+|+|.+..+.+... +....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999876521111 10000
Q ss_pred --------EEEEEEEeeCCeEEEEEEEeCCCcccc-------------cccccccc-cCccEEEEEEECCChhhHHHHHH
Q 031777 44 --------DFKIRTVEQDGKTIKLQIWDTAGQERF-------------RTITSSYY-RGAHGIIIVYDVTDQESFNNVKQ 101 (153)
Q Consensus 44 --------~~~~~~~~~~~~~~~~~~~d~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~ 101 (153)
+.....+..++. ..+.++||||.... ..+...++ ..+|++++|+|.+....-...
T Consensus 130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-- 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH--
T ss_pred CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH--
Confidence 000111111111 25789999995431 12223343 568999999998864332222
Q ss_pred HHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q 031777 102 WLNEIDRYASDNVNKLLVGNKCDLTANKV 130 (153)
Q Consensus 102 ~~~~~~~~~~~~~~~ilv~~K~D~~~~~~ 130 (153)
+..+......+.|+++|+||+|+.+...
T Consensus 207 -l~ll~~L~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 207 -LKIAKEVDPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp -HHHHHHHCTTCSSEEEEEECTTSSCTTC
T ss_pred -HHHHHHHHhcCCCEEEEEeCcccCCcch
Confidence 1223333445689999999999976443
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2.2e-11 Score=86.06 Aligned_cols=83 Identities=19% Similarity=0.085 Sum_probs=66.4
Q ss_pred cccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC-HHHHHHHHHHhc
Q 031777 67 QERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKVYLLLYT 144 (153)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~-~~~~~~~~~~~~ 144 (153)
++.+..+.+.+++++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+.+++. .++..++.+. .
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-A 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-T
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-C
Confidence 5667777888999999999999999986 88888888887654 468999999999997654333 4555666666 6
Q ss_pred CceeeecCC
Q 031777 145 GIFFFYPSP 153 (153)
Q Consensus 145 ~~~~~~~Sa 153 (153)
+.+++++||
T Consensus 142 g~~~~~~SA 150 (302)
T 2yv5_A 142 GYDVLKVSA 150 (302)
T ss_dssp TCEEEECCT
T ss_pred CCeEEEEEC
Confidence 789999997
No 207
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.27 E-value=3.7e-11 Score=86.46 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+.++||+|.... .......+|++++|+|..+....+.+.. .. .+.|.++|+||+|+.+
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~i--l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------GI--IEMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------HH--HhcCCEEEEeeecCCC
Confidence 57899999995321 2334678999999999886543221111 11 1357899999999853
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=7e-11 Score=85.96 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=56.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcC-CCCcceeeeeEEEEEEEeeCCe---------------EEEEEEEeCCCccccc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSY-IESYISTIGVDFKIRTVEQDGK---------------TIKLQIWDTAGQERFR 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~g~~~~~ 71 (153)
..++.++|++|+|||||+|.|.+... .....|+.+.+.....+.+++. ...+.+||+||.....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999998654 3333343333333334444431 1368899999954321
Q ss_pred c-------cccccccCccEEEEEEECCC
Q 031777 72 T-------ITSSYYRGAHGIIIVYDVTD 92 (153)
Q Consensus 72 ~-------~~~~~~~~~~~~i~v~d~~~ 92 (153)
. .....++.+|++++++|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 22334578999999999864
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=3.9e-11 Score=82.76 Aligned_cols=71 Identities=14% Similarity=-0.019 Sum_probs=41.5
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+.+.+|||||......... ..+.. +++++++|............ +..........+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 4799999999876543221 13355 88888888754322222211 111111111235799999999998654
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.07 E-value=5.2e-10 Score=77.77 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcc-------eeeeeEEEEEEEeeC--CeEEEEEEEeCCCccccc-------
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYI-------STIGVDFKIRTVEQD--GKTIKLQIWDTAGQERFR------- 71 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~d~~g~~~~~------- 71 (153)
.++++|+|++|+|||||++.|.+...+.... ...........+... +....+.++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 4789999999999999999998743221110 000000011111111 112367899999832100
Q ss_pred ---------------------ccccccccCccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 72 ---------------------TITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 72 ---------------------~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
...+..+..+++.+++.|... .-.-.. ...++..... .++++|.+|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCC
Confidence 001112234588888888542 111111 2233333333 89999999999754
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.05 E-value=5.5e-11 Score=85.17 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=35.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+.++||+|...-. ......+|.+++++|.......+.+.... . +.+.+++.||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccC
Confidence 579999999964321 12346889999999976432221111110 0 135577789999754
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=7.4e-11 Score=85.44 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCC---C--cceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc----cc---
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIE---S--YISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT----SS--- 76 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~--- 76 (153)
.+++++|.+|+|||||+|+|.+..... . .....+++.....+.... .+.++||||......+. ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999998743111 0 111112222233333333 27899999964332111 11
Q ss_pred -c--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 031777 77 -Y--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN 128 (153)
Q Consensus 77 -~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~ 128 (153)
+ .+..+.++++++......+..+ ..+......+.|+++++||.|..+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCcccccc
Confidence 1 2556888888886321111110 0122222346899999999998653
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=1.8e-09 Score=79.17 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCcCCCCcc----eeeeeEEEEEEEeeCCeEEEEEEEeCCCc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADDSYIESYI----STIGVDFKIRTVEQDGKTIKLQIWDTAGQ 67 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 67 (153)
.++++|+|++|+|||||++.|.+..+..... +..............+....+.++|++|.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 3679999999999999999999864322111 11111111111122222347889999874
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=9e-11 Score=85.03 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=65.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------cCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcccccccc--------
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD------SYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTIT-------- 74 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------- 74 (153)
.+++++|.+|+|||||+|+|.+. .......+. ++.....+.... .+.++||||........
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999975 111111122 122233333333 37899999954332111
Q ss_pred cccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q 031777 75 SSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK 129 (153)
Q Consensus 75 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~ 129 (153)
..++ +..+.++++++....-.+..+ ..+......+.|+++++||.|.....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccccc
Confidence 1111 567899999987422111111 01222223468999999999986543
No 215
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.83 E-value=3.4e-09 Score=70.53 Aligned_cols=87 Identities=9% Similarity=-0.049 Sum_probs=52.5
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHH----hc-CCCCcEEEEEecC-CCCCCcccCHHHHH
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR----YA-SDNVNKLLVGNKC-DLTANKVVSYETAK 137 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~----~~-~~~~~~ilv~~K~-D~~~~~~~~~~~~~ 137 (153)
.+|+..++..|+.|+.++|++|||+|.+|++.++ .+..+..+.. .. -.+.|++|++||. |+.. ..+.++..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3478899999999999999999999999876544 3333333322 11 1578999999995 6743 34444443
Q ss_pred HHHHH---hcCceeeecCC
Q 031777 138 VYLLL---YTGIFFFYPSP 153 (153)
Q Consensus 138 ~~~~~---~~~~~~~~~Sa 153 (153)
+.... ...+.++.|||
T Consensus 186 e~L~L~~l~R~W~Iq~csA 204 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEA 204 (227)
T ss_dssp HHTTGGGGCSCEEEEEEET
T ss_pred HHcCCcCCCCCEEEEEeEC
Confidence 33211 25677888887
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=1.8e-08 Score=70.49 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=35.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCC-CCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCcc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYI-ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~ 68 (153)
...++++++|.+|+|||||+|+|.+.... ....+..+ .....+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence 34689999999999999999999975532 22222222 1112222332 58899999964
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=8.7e-09 Score=71.31 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER 69 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 69 (153)
++++++|.+|+|||||+|+|.+...... .+..+.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5899999999999999999997654221 1222221221222222 2578999999653
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.54 E-value=1.9e-07 Score=70.11 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=61.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh------cCcCC----CCccee-----------eeeEEEEEEEe-------------e
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFA------DDSYI----ESYIST-----------IGVDFKIRTVE-------------Q 52 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~ 52 (153)
....|+++|.+|+||||++++|. +.+.. ..+.+. .+.++...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210 000000 00111110000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-cc---ccc--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q 031777 53 DGKTIKLQIWDTAGQERFRT-IT---SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDL 125 (153)
Q Consensus 53 ~~~~~~~~~~d~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-ilv~~K~D~ 125 (153)
....+.+.++||||...... .. ... ...+|.+++|+|....... ......+.. ..|+ .+|.||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh----hcCceEEEEeCCcc
Confidence 00225789999999754321 11 111 2268999999998764321 111222322 1464 899999998
Q ss_pred CC
Q 031777 126 TA 127 (153)
Q Consensus 126 ~~ 127 (153)
..
T Consensus 253 ~~ 254 (504)
T 2j37_W 253 HA 254 (504)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=66.25 Aligned_cols=87 Identities=9% Similarity=-0.057 Sum_probs=56.3
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHH----HHHHhc-CCCCcEEEEEec-CCCCCCcccCHHHHH
Q 031777 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN----EIDRYA-SDNVNKLLVGNK-CDLTANKVVSYETAK 137 (153)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~----~~~~~~-~~~~~~ilv~~K-~D~~~~~~~~~~~~~ 137 (153)
.+|++.++..|+.|+.++|++|||+|.+|++.++ .+..+. .+.... -.+.|++|++|| .|+.. ..+.++..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4678899999999999999999999999987544 322222 232221 257999999997 58753 34444433
Q ss_pred HHHHH---hcCceeeecCC
Q 031777 138 VYLLL---YTGIFFFYPSP 153 (153)
Q Consensus 138 ~~~~~---~~~~~~~~~Sa 153 (153)
+.... ...+.+..|||
T Consensus 271 e~L~L~~l~r~W~Iq~csA 289 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEA 289 (312)
T ss_dssp HHTTGGGGCSCEEEEEEET
T ss_pred HHcCCccCCCcEEEEeccc
Confidence 32211 14667777776
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.46 E-value=1.8e-07 Score=67.72 Aligned_cols=80 Identities=26% Similarity=0.406 Sum_probs=58.8
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHH----HH
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY----LL 141 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~----~~ 141 (153)
..+.|....+.+.+..+++++|+|+.++. ..|...+..... +.|+++|+||+|+.+. ....++.++| ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 45678888888999999999999999853 346666666554 6899999999999653 3444555554 44
Q ss_pred HhcCc---eeeecCC
Q 031777 142 LYTGI---FFFYPSP 153 (153)
Q Consensus 142 ~~~~~---~~~~~Sa 153 (153)
. .+. .++.+||
T Consensus 128 ~-~g~~~~~v~~iSA 141 (368)
T 3h2y_A 128 Q-LGLKPEDVFLISA 141 (368)
T ss_dssp H-TTCCCSEEEECCT
T ss_pred H-cCCCcccEEEEeC
Confidence 4 555 7899997
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.46 E-value=9.1e-08 Score=72.99 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=38.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceee-eeEEEEEEE--ee-CCeEEEEEEEeCCCcccc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTI-GVDFKIRTV--EQ-DGKTIKLQIWDTAGQERF 70 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~~~d~~g~~~~ 70 (153)
...+.|+|+|.+|+|||||+|+|.+....-....+. +.+...... .. ......+.++||||....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 356889999999999999999999865321111111 111111111 00 112257899999996543
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.40 E-value=6e-07 Score=68.99 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (153)
..++|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999853
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.30 E-value=8e-07 Score=65.17 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCccee-eeeEEE--EEEEeeCCeEEEEEEEeCCCcccccccccc-----cccC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADDSYIESYIST-IGVDFK--IRTVEQDGKTIKLQIWDTAGQERFRTITSS-----YYRG 80 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~-----~~~~ 80 (153)
..++|+|++|+|||||+|.+.+...+...... .+.+.. ........ ...+.+||++|.......... .+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 47999999999999999999983222111100 000000 01111111 115789999985322111111 1233
Q ss_pred ccEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 031777 81 AHGIIIVYDVT--DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125 (153)
Q Consensus 81 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~ 125 (153)
.+..++ ++.. .+... .....+. ..+.|+++|.||.|+
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~---~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAIS---MMKKEFYFVRTKVDS 187 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHH---HTTCEEEEEECCHHH
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHH---hcCCCeEEEEecCcc
Confidence 355554 6654 22211 1122222 235799999999997
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.18 E-value=6.2e-07 Score=64.93 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=56.3
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHH----HH
Q 031777 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVY----LL 141 (153)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~----~~ 141 (153)
.++.|......+...++++++|+|+.++.+ .|.+.+..... +.|+++|+||+|+... ....+..++| .+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence 477888888888899999999999998763 34444444444 6899999999999753 3344455544 33
Q ss_pred HhcCc---eeeecCC
Q 031777 142 LYTGI---FFFYPSP 153 (153)
Q Consensus 142 ~~~~~---~~~~~Sa 153 (153)
. .+. .++.+||
T Consensus 130 ~-~g~~~~~v~~iSA 143 (369)
T 3ec1_A 130 E-LGLCPVDVCLVSA 143 (369)
T ss_dssp T-TTCCCSEEEECBT
T ss_pred H-cCCCcccEEEEEC
Confidence 4 454 6788887
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.09 E-value=3e-06 Score=59.15 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=51.2
Q ss_pred EeCCCcc-cccccccccccCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHH
Q 031777 62 WDTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKV 138 (153)
Q Consensus 62 ~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~ 138 (153)
-..|||. .........++.+|+++.|+|+.++.+... +..++ .+.|.++|+||+|+.+ .+..++
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~-----~~~~~~ 70 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKAD-----AAVTQQ 70 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSC-----HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCC-----HHHHHH
Confidence 3477875 344455667889999999999998877642 22222 3689999999999964 233444
Q ss_pred HHHHh--cCceeeecCC
Q 031777 139 YLLLY--TGIFFFYPSP 153 (153)
Q Consensus 139 ~~~~~--~~~~~~~~Sa 153 (153)
|.+.+ .+.+++.+||
T Consensus 71 ~~~~~~~~g~~~i~iSA 87 (282)
T 1puj_A 71 WKEHFENQGIRSLSINS 87 (282)
T ss_dssp HHHHHHTTTCCEEECCT
T ss_pred HHHHHHhcCCcEEEEEC
Confidence 44432 4677888886
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.01 E-value=6.8e-06 Score=60.67 Aligned_cols=63 Identities=21% Similarity=0.139 Sum_probs=37.6
Q ss_pred EEEEEEeCCCcccccccc------cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEecCCCC
Q 031777 57 IKLQIWDTAGQERFRTIT------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-N-KLLVGNKCDLT 126 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~-~ilv~~K~D~~ 126 (153)
+.+.++||||........ ...+..+|.+++|+|..... ........+ .. .. | ..+|.||+|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KE-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HT-TSCSCEEEEEECSSSC
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hh-cccCCeEEEEeCCCCc
Confidence 578999999965421110 11123689999999976432 111122222 22 24 5 89999999975
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.99 E-value=4.5e-05 Score=56.38 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=38.2
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 031777 57 IKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA 127 (153)
Q Consensus 57 ~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~ 127 (153)
+.+.++||+|........- .....+|.+++|+|......- ......+.. .-.+..+|.||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~---~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE---ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH---SCTTEEEEEECCSSCS
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh---hCCCeEEEEECCCCcc
Confidence 5788999999543221111 112357899999998753221 122223322 2246789999999753
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.97 E-value=6.7e-06 Score=60.86 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
+..-|.|+|++++|||||+|+|.+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 457789999999999999999985
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.97 E-value=3.1e-07 Score=68.47 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=57.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhcCcCCCCcceeeeeEEEEEEEeeCCeEEEEEEEeCCCccc--ccccc--------cc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQER--FRTIT--------SS 76 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--~~~~~--------~~ 76 (153)
....|+++|.+|+||||+.++|...-... ..++.............+......+||..|... ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987532111 111111000000000111112345789888732 22322 44
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHh
Q 031777 77 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY 109 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 109 (153)
++...++.++|+|.++. +.+.-..|++.++..
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 56667888999999986 555555666666554
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.83 E-value=1.1e-05 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.820 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+++++|++|+|||||++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 231
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.77 E-value=1.8e-05 Score=50.94 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
|......-..++++|++||||||+++.|..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 544444446799999999999999998764
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.76 E-value=1.5e-05 Score=51.83 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|||||||++.|.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999986
No 233
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.73 E-value=1.7e-05 Score=52.42 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 234
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=8.8e-05 Score=52.34 Aligned_cols=78 Identities=12% Similarity=0.220 Sum_probs=47.0
Q ss_pred ccccccccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh--cCcee
Q 031777 72 TITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY--TGIFF 148 (153)
Q Consensus 72 ~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~--~~~~~ 148 (153)
...+..+.++|.+++|+|+.+|..-.. +..+ +......++|.++|+||+|+.+.... .+..+.|.+.+ .+.+.
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~---L~~~~~~~~~~vivlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRF---LVLVEANDIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHH---HHHHHTTTCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHH---HHHHHHCCCCEEEEEECCccCchhhh-HHHHHHHHHHHHhCCCeE
Confidence 344456789999999999997654333 2222 22222346899999999999754320 01233444332 35666
Q ss_pred eecCC
Q 031777 149 FYPSP 153 (153)
Q Consensus 149 ~~~Sa 153 (153)
+.+||
T Consensus 154 ~~~sa 158 (307)
T 1t9h_A 154 YLTSS 158 (307)
T ss_dssp EECCH
T ss_pred EEEec
Confidence 66664
No 235
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.67 E-value=8.9e-05 Score=54.71 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=37.3
Q ss_pred EEEEEEeCCCccc--cccc----ccc--cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 031777 57 IKLQIWDTAGQER--FRTI----TSS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT 126 (153)
Q Consensus 57 ~~~~~~d~~g~~~--~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~ 126 (153)
+.+.+.|+||... .... ... -.-..+.++||+|...... .......+.... .+..+|.||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGT 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEeccccc
Confidence 5688999999644 2111 111 1124589999999875322 222223333222 4678999999974
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=2.7e-05 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
++|+|++|||||||++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999985
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=2.8e-05 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999998863
No 238
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.63 E-value=2.9e-05 Score=51.55 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|||||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.62 E-value=3.1e-05 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++|+|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998863
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=3.3e-05 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
-.++++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999999864
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.61 E-value=3.2e-05 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.58 E-value=3.8e-05 Score=51.00 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...++|+|++|||||||++.|.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998764
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.58 E-value=3.5e-05 Score=49.68 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 031777 10 KLLLIGDSGVGKSCLLLRF 28 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l 28 (153)
-++++|++|||||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999953
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.56 E-value=4e-05 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999874
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=4.8e-05 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--++|+|++|+|||||++.|..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999999985
No 246
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.52 E-value=5.8e-05 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...++|+|++|||||||++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.51 E-value=5.3e-05 Score=50.36 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
.-++|+|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999863
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.51 E-value=5.3e-05 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.51 E-value=5.7e-05 Score=48.18 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++++|+.|+|||||++.+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998864
No 250
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.49 E-value=4e-05 Score=52.90 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCCcc-cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHH
Q 031777 64 TAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLL 142 (153)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~ 142 (153)
.|||. .........++++|+++.|+|+.++.+..... +. + . +.|.++|+||+|+.+. +..++|.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~-----~~~~~~~~~ 70 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADE-----KTTKKWVEF 70 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCH-----HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCH-----HHHHHHHHH
Confidence 56765 22334566788999999999999877654211 11 1 1 6899999999999652 233333332
Q ss_pred h--cCceeeecCC
Q 031777 143 Y--TGIFFFYPSP 153 (153)
Q Consensus 143 ~--~~~~~~~~Sa 153 (153)
+ .+.++ .+||
T Consensus 71 ~~~~g~~v-~iSa 82 (262)
T 3cnl_A 71 FKKQGKRV-ITTH 82 (262)
T ss_dssp HHHTTCCE-EECC
T ss_pred HHHcCCeE-EEEC
Confidence 1 35565 6665
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.49 E-value=6.4e-05 Score=49.25 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|+|+||+|+|||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.47 E-value=6.6e-05 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.46 E-value=6.9e-05 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
No 254
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.46 E-value=6.6e-05 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 255
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.46 E-value=6.7e-05 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++|+|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.45 E-value=6.8e-05 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=7.6e-05 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=7.2e-05 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999876
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.44 E-value=8.6e-05 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 031777 9 FKLLLIGDSGVGKSCLLLRF 28 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l 28 (153)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.44 E-value=7.4e-05 Score=49.20 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
..++|+|++||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.43 E-value=7.4e-05 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999874
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.43 E-value=7.7e-05 Score=48.60 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++++|++||||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 263
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.43 E-value=8.8e-05 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 264
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.43 E-value=7.7e-05 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.42 E-value=8.2e-05 Score=50.29 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.42 E-value=8.6e-05 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-|+++|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999874
No 267
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.42 E-value=8.2e-05 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999874
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.41 E-value=9e-05 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 269
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.40 E-value=8.5e-05 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 270
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.40 E-value=0.00011 Score=48.20 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
|-+..+....|+|.|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4344455678999999999999999998753
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.40 E-value=8.8e-05 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=8.7e-05 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|++|+|||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999999744
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.39 E-value=9.2e-05 Score=50.72 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.39 E-value=9.4e-05 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++|+|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.39 E-value=0.00013 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.39 E-value=9.4e-05 Score=50.68 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 277
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.39 E-value=0.00017 Score=47.71 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 4 EYDYLFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
.......|+|+|++||||||+++.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444567999999999999999998763
No 278
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.39 E-value=7.4e-05 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.38 E-value=0.0001 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
No 280
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.37 E-value=0.00011 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 281
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.37 E-value=9.8e-05 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.00011 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 283
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.00012 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 031777 9 FKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (153)
-.++|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.36 E-value=9.7e-05 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998876
No 285
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.36 E-value=0.00012 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.35 E-value=0.00014 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.35 E-value=0.00011 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998875
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.35 E-value=0.00011 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.34 E-value=0.00011 Score=50.80 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999874
No 290
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00013 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998853
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.32 E-value=0.00013 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-++++|++|+|||||++++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999886
No 292
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.32 E-value=0.00012 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....-++|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999998865
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.31 E-value=0.00013 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|+|++||||||+++.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999998865
No 294
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.00016 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.30 E-value=0.00014 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 296
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.30 E-value=0.00015 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=0.00011 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.30 E-value=0.00014 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.30 E-value=0.00014 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031777 10 KLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~ 29 (153)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 300
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00015 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 301
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.29 E-value=0.00016 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 302
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.28 E-value=0.00016 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 303
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.28 E-value=0.00014 Score=48.64 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 304
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=0.00017 Score=50.71 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++++|++|+|||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 47899999999999999998744
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.28 E-value=8.5e-05 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh-c
Q 031777 10 KLLLIGDSGVGKSCLLLRFA-D 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~-~ 30 (153)
-++|+|++||||||+++.|. +
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp EEEEECSCC----CHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999998 5
No 306
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.27 E-value=0.00013 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-+++|+|++|||||||++.|.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.27 E-value=7.6e-05 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999886
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00018 Score=47.34 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 309
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.26 E-value=0.00015 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 310
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.25 E-value=5.4e-05 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|++|+|||||+|.|.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999874
No 311
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.23 E-value=0.00012 Score=51.68 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999998886
No 312
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.23 E-value=0.00017 Score=51.99 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998843
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.23 E-value=0.00022 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
+.|.++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.23 E-value=0.00022 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.22 E-value=0.00019 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999874
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.22 E-value=0.00021 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998865
No 317
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.22 E-value=0.00018 Score=50.60 Aligned_cols=20 Identities=50% Similarity=0.743 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031777 10 KLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~ 29 (153)
.++++|++|+|||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00019 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|.|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00025 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.20 E-value=0.00026 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|++.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.20 E-value=0.00023 Score=45.95 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 322
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.19 E-value=0.0002 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998743
No 323
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.19 E-value=0.00021 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999998743
No 324
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.19 E-value=0.00021 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|++|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.18 E-value=0.00033 Score=45.40 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 1 m~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
|++. ....|++.|.+||||||+.+.|..
T Consensus 1 m~~~--~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKS--KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCC--CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCC--cCcEEEEECCCCCCHHHHHHHHHH
Confidence 4444 235799999999999999998864
No 326
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.18 E-value=0.00025 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988864
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.17 E-value=0.00034 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+-+.|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998753
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00031 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 329
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.17 E-value=0.00021 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|++|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999873
No 330
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.17 E-value=0.00026 Score=45.84 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998853
No 331
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.17 E-value=0.00022 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999998743
No 332
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.00023 Score=51.37 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998743
No 333
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.16 E-value=0.00023 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998743
No 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.16 E-value=0.00027 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998754
No 335
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00017 Score=45.39 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||||++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.15 E-value=0.00026 Score=47.11 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 337
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.15 E-value=0.00066 Score=42.25 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4699999999999999998875
No 338
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00024 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 339
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.14 E-value=0.00035 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.....|+|.|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999987754
No 340
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.14 E-value=0.00024 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999998743
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.13 E-value=0.00025 Score=51.33 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4689999999999999999874
No 342
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.12 E-value=0.00026 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.11 E-value=0.00035 Score=47.53 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 344
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.11 E-value=0.00025 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999886
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.11 E-value=0.00034 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+.++|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00039 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-|++.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999864
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00033 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.00028 Score=48.91 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||||++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999986
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.00037 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00038 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998753
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00035 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.08 E-value=0.00041 Score=48.92 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-|.|+|++|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.08 E-value=0.00029 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999998864
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.08 E-value=0.0003 Score=48.18 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 355
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=0.0003 Score=53.05 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|+|++|||||||++.+.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.07 E-value=0.00032 Score=47.85 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999886
No 357
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.07 E-value=0.00021 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998743
No 358
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.06 E-value=0.00038 Score=44.75 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998875
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.06 E-value=0.00036 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 360
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.04 E-value=0.00033 Score=51.03 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.+.|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998873
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.04 E-value=0.00045 Score=46.32 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 031777 11 LLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (153)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988764
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.04 E-value=0.00049 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-+.|+|++|||||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.03 E-value=0.00035 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--++++|++||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.03 E-value=0.00037 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999864
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.02 E-value=0.00033 Score=46.79 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 366
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00033 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3346899999999999999998864
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.01 E-value=0.00043 Score=47.34 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 031777 9 FKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (153)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.01 E-value=0.00053 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988863
No 369
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.01 E-value=0.00044 Score=46.36 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.00 E-value=0.00015 Score=48.03 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.98 E-value=0.00032 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
..-++|+|+.|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 345789999999999999999864
No 372
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.98 E-value=0.00051 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998754
No 373
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.98 E-value=0.0002 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998743
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.97 E-value=0.00043 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.--++++|++|+||||+++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 375
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.97 E-value=0.00035 Score=47.07 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
-.-|+|.|+.||||||+++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999988764
No 376
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.96 E-value=0.00052 Score=45.00 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 377
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00045 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 378
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.00052 Score=44.55 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.95 E-value=0.00047 Score=47.73 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 489999999999999999886
No 380
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.95 E-value=0.0004 Score=49.44 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999886
No 381
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.0005 Score=44.75 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.00059 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.93 E-value=0.00055 Score=45.64 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998854
No 384
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00044 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999998874
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.93 E-value=0.00051 Score=44.73 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998875
No 386
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.92 E-value=0.00083 Score=43.54 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+++.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36789999999999999998864
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00055 Score=43.69 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 388
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.92 E-value=0.00038 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=16.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
No 389
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.00058 Score=44.55 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.91 E-value=0.0006 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.91 E-value=0.00063 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|++.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00072 Score=44.98 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 393
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.90 E-value=0.00062 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~ 29 (153)
.+.|+|.|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999886
No 394
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.88 E-value=0.0034 Score=46.52 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=39.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc------------------CcCCC---CcceeeeeEEEE--EEE-eeCCeEEEEEE
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD------------------DSYIE---SYISTIGVDFKI--RTV-EQDGKTIKLQI 61 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~------------------~~~~~---~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 61 (153)
....-|.|+|+.++|||+|+|.|+. ..|.. ....|.++-... ... ..++..+.+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3456777999999999999996541 11111 111223322221 111 12567789999
Q ss_pred EeCCCccccc
Q 031777 62 WDTAGQERFR 71 (153)
Q Consensus 62 ~d~~g~~~~~ 71 (153)
+||.|..+..
T Consensus 145 lDTEG~~d~~ 154 (457)
T 4ido_A 145 MDTQGTFDSQ 154 (457)
T ss_dssp EEECCBTCTT
T ss_pred EeccCCCCcc
Confidence 9999965443
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.88 E-value=0.0006 Score=44.06 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988854
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.87 E-value=0.00072 Score=43.05 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998854
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.87 E-value=0.0007 Score=42.59 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031777 11 LLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~ 29 (153)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.87 E-value=0.00065 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 399
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.86 E-value=0.00059 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--++++|++||||||++..|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4688999999999999998865
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.85 E-value=0.00049 Score=44.13 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 401
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.84 E-value=0.00068 Score=48.65 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
++.|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998743
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.84 E-value=0.00072 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.84 E-value=0.00061 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 404
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.83 E-value=0.00063 Score=50.98 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--++|+|++|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4688999999999999998865
No 405
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.83 E-value=0.00076 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..+++.|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 406
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00057 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.9
Q ss_pred EEEEE--cCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLI--GDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~--G~~~~GKstli~~l~~~~ 32 (153)
||+|+ |+++.||++|++++.+..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 45555 899999999999999864
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.81 E-value=0.00073 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.80 E-value=0.001 Score=46.20 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~ 29 (153)
....|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999886
No 409
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.80 E-value=0.00084 Score=44.04 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 410
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00076 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999886
No 411
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.77 E-value=0.00079 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998873
No 412
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.76 E-value=0.0056 Score=44.11 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=41.8
Q ss_pred cccCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHHh--cCceeeecCC
Q 031777 77 YYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKVYLLLY--TGIFFFYPSP 153 (153)
Q Consensus 77 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~ilv~~K~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa 153 (153)
...++|.+++|.+.. |.. ...+..++..... .+.|.+||+||+|+.+... .+..++|...| .+.+.+.+||
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence 468899999887764 443 2223333322222 2568899999999975321 12244454432 4667777775
No 413
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.75 E-value=0.00088 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|+.|||||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999873
No 414
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.74 E-value=0.00089 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999998764
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.74 E-value=0.00082 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998876
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.73 E-value=0.00082 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 417
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.71 E-value=0.00092 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.71 E-value=0.001 Score=43.21 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031777 11 LLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (153)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.70 E-value=0.00094 Score=46.61 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.69 E-value=0.001 Score=49.28 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.00093 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-+.++|+.|||||||++.+.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999874
No 422
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.68 E-value=0.001 Score=48.07 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031777 11 LLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~ 29 (153)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999999876
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.0011 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-|++.|++||||||+++.|..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.66 E-value=0.001 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999885
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.001 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.+.|+|+.|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999999873
No 426
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.64 E-value=0.0011 Score=41.33 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (153)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999998763
No 427
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.64 E-value=0.00084 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999873
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.64 E-value=0.0014 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
....|.|.|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.0012 Score=44.00 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 430
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.62 E-value=0.00095 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++++|++|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998873
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.61 E-value=0.0016 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999874
No 432
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.59 E-value=0.0013 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999999873
No 433
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.59 E-value=0.0008 Score=51.49 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|||||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999998876
No 434
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.58 E-value=0.0016 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...-+++.|++|+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345788889999999999999875
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.58 E-value=0.0012 Score=45.64 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 436
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.58 E-value=0.0013 Score=45.68 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 437
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.0013 Score=43.18 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998875
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0014 Score=45.25 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999875
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0013 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.53 E-value=0.0015 Score=49.52 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 441
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0019 Score=45.90 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 442
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.0014 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (153)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 443
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.52 E-value=0.0017 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 444
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.51 E-value=0.0012 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999888765
No 445
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.0021 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999986654
No 446
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.50 E-value=0.0011 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998876
No 447
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.49 E-value=0.0015 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||+|++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999875
No 448
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.49 E-value=0.0025 Score=44.53 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.47 E-value=0.0019 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=20.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.++|++||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988854
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.47 E-value=0.0017 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999875
No 451
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.47 E-value=0.0016 Score=45.66 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||+|++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999886
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.47 E-value=0.0017 Score=42.87 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
.-|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999998753
No 453
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.47 E-value=0.0027 Score=43.67 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.....+++.|++|+|||++++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456899999999999999999876
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0021 Score=43.36 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 6 DYLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.....|.|+|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.0019 Score=43.48 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-++|.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877653
No 456
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0017 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++|.|++|+|||||++.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0018 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 031777 11 LLLIGDSGVGKSCLLLRFADDS 32 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (153)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998743
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.41 E-value=0.0022 Score=42.09 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 459
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.41 E-value=0.0021 Score=42.49 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 031777 11 LLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~ 29 (153)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999875
No 460
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0015 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998876
No 461
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.38 E-value=0.0021 Score=46.14 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 462
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.002 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++++|++|+||||++..|..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998763
No 463
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.36 E-value=0.002 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.35 E-value=0.0021 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.34 E-value=0.0012 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=16.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998764
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.002 Score=45.81 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
++++.|++|+||||+++.+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 467
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.28 E-value=0.0025 Score=44.40 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 468
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.25 E-value=0.0026 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
--++++|++|+||||++..|..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4688999999999999998764
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.24 E-value=0.0037 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999987654
No 470
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.23 E-value=0.0031 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADDSY 33 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~ 33 (153)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999986544
No 471
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.20 E-value=0.0029 Score=44.75 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-|+|+|++|||||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 578999999999999999875
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.20 E-value=0.0026 Score=46.16 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhc
Q 031777 7 YLFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++|+|++|+|||++++.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.19 E-value=0.0031 Score=44.61 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999875
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0031 Score=44.68 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||+|++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5799999999999999999886
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.17 E-value=0.003 Score=45.09 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-|+|+|++|+|||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.16 E-value=0.0026 Score=43.59 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...|+|.|..||||||+++.|..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998874
No 477
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.15 E-value=0.0034 Score=44.19 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.13 E-value=0.0026 Score=48.43 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
--.++++|++|||||||++.|.+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35789999999999999998875
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.12 E-value=0.0037 Score=40.43 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-+++.|++|+||||+.-.|..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 480
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.11 E-value=0.0026 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998875
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.11 E-value=0.0035 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 482
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.10 E-value=0.0034 Score=44.34 Aligned_cols=22 Identities=45% Similarity=0.514 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++|.|++|+|||||++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 3588999999999999999875
No 483
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.10 E-value=0.002 Score=53.86 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
+|+|+|++|||||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0033 Score=44.59 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
++++.|++|+|||++++.+..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.09 E-value=0.0019 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 031777 10 KLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (153)
.++|+|+.|+|||||++.+.+.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.08 E-value=0.0032 Score=47.60 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHH--Hhc
Q 031777 11 LLLIGDSGVGKSCLLLR--FAD 30 (153)
Q Consensus 11 i~v~G~~~~GKstli~~--l~~ 30 (153)
++|+|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 487
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.06 E-value=0.0035 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++|.|++|+|||+|++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998875
No 488
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.05 E-value=0.0038 Score=44.51 Aligned_cols=20 Identities=45% Similarity=0.698 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 031777 9 FKLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (153)
++ +|+|+.|+||||+++++.
T Consensus 25 ~~-~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 IN-LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EE-EEECCTTSSHHHHHHHHH
T ss_pred eE-EEECCCCCCHHHHHHHHH
Confidence 44 599999999999999874
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.05 E-value=0.0008 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 031777 11 LLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (153)
++|+|++|||||||++.+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 357899999999999998763
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.05 E-value=0.0035 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+++.|++|+|||+|++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 491
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0037 Score=46.10 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..-+++.|+||+|||+|++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999986
No 492
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.04 E-value=0.0037 Score=45.71 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 031777 10 KLLLIGDSGVGKSCLLLRFA 29 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~ 29 (153)
-+.|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999775
No 493
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.03 E-value=0.0033 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
..+++|.|.+|||||++++.+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998764
No 494
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.02 E-value=0.003 Score=44.71 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
-.+|+|+.|+|||||++.+..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999873
No 495
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.02 E-value=0.0038 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 031777 8 LFKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (153)
...+++.|++|+|||++++.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.01 E-value=0.0015 Score=44.81 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999875
No 497
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.0037 Score=47.00 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 031777 10 KLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (153)
.++++|++|+|||+|++.+.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999886
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.99 E-value=0.0024 Score=49.66 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 031777 10 KLLLIGDSGVGKSCLLLRF 28 (153)
Q Consensus 10 ~i~v~G~~~~GKstli~~l 28 (153)
.++|+|++|||||||++.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 4789999999999999754
No 499
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0044 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 031777 9 FKLLLIGDSGVGKSCLLLRFAD 30 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (153)
-.++|.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.99 E-value=0.0043 Score=42.45 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 031777 9 FKLLLIGDSGVGKSCLLLRFADD 31 (153)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (153)
..+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57899999999999999998764
Done!