Query 031778
Match_columns 153
No_of_seqs 115 out of 1074
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_Q RPL17, 60S ribosomal pr 100.0 1.3E-65 4.3E-70 405.6 13.0 151 1-152 3-153 (183)
2 3iz5_V 60S ribosomal protein L 100.0 8.2E-65 2.8E-69 397.9 12.6 152 1-152 1-152 (171)
3 2zkr_r 60S ribosomal protein L 100.0 6.8E-64 2.3E-68 396.5 14.3 151 1-152 1-151 (184)
4 3u5e_P L20A, YL17, 60S ribosom 100.0 2.6E-64 8.9E-69 398.8 11.3 151 1-152 1-151 (184)
5 3j21_S 50S ribosomal protein L 100.0 3.1E-63 1.1E-67 383.8 10.1 147 2-152 5-151 (155)
6 1vq8_R 50S ribosomal protein L 100.0 7.7E-63 2.6E-67 381.6 11.4 147 2-152 3-149 (155)
7 3r8s_S 50S ribosomal protein L 100.0 2.2E-42 7.6E-47 253.7 9.0 107 13-152 1-108 (110)
8 2ftc_M Mitochondrial ribosomal 100.0 5.7E-40 1.9E-44 240.9 11.7 102 18-152 2-105 (110)
9 2zjr_P 50S ribosomal protein L 100.0 6.6E-41 2.2E-45 253.5 6.6 108 12-152 21-129 (134)
10 1i4j_A 50S ribosomal protein L 100.0 3.8E-40 1.3E-44 241.8 10.1 104 13-152 1-105 (110)
11 3bbo_U Ribosomal protein L22; 100.0 2.1E-41 7.1E-46 269.9 1.2 117 3-152 20-137 (199)
12 3lvl_A NIFU-like protein; prot 69.0 7.6 0.00026 28.0 4.8 68 14-106 56-125 (129)
13 4fxe_A Antitoxin RELB; toxin/a 67.4 11 0.00037 25.1 4.9 35 27-62 14-48 (79)
14 3k2t_A LMO2511 protein; lister 57.6 4.7 0.00016 25.4 1.6 16 36-51 10-25 (57)
15 3ka5_A Ribosome-associated pro 52.3 6.7 0.00023 25.5 1.7 16 36-51 10-25 (65)
16 3fau_A NEDD4-binding protein 2 50.7 24 0.00082 22.8 4.4 20 36-55 5-24 (82)
17 2z7e_A ISCU protein, NIFU-like 45.5 31 0.0011 25.7 4.8 70 14-105 55-124 (157)
18 2d9i_A NEDD4-binding protein 2 43.9 11 0.00038 25.3 1.9 37 36-72 13-56 (96)
19 3lyv_A Ribosome-associated fac 43.7 6.7 0.00023 25.5 0.7 14 37-50 12-25 (66)
20 4eb5_C NIFU protein (NIFU-1); 36.7 1E+02 0.0035 22.8 6.4 70 14-105 50-119 (153)
21 2qq4_A Iron-sulfur cluster bio 35.0 37 0.0013 24.5 3.6 38 14-51 56-93 (138)
22 2vkc_A NEDD4-binding protein 2 33.6 31 0.0011 24.7 3.0 36 36-71 58-100 (135)
23 1xjs_A NIFU-like protein; SR17 33.5 40 0.0014 24.6 3.6 81 13-102 57-142 (147)
24 2zqe_A MUTS2 protein; alpha/be 31.5 24 0.00083 23.3 1.9 18 36-53 9-26 (83)
25 1su0_B NIFU like protein ISCU; 29.2 46 0.0016 24.6 3.4 81 14-103 57-142 (159)
26 3ouv_A Serine/threonine protei 24.2 30 0.001 21.5 1.3 15 36-50 13-27 (71)
27 3qd7_X Uncharacterized protein 22.3 42 0.0014 24.3 1.9 19 36-54 52-70 (137)
28 3v7d_A Suppressor of kinetocho 20.7 77 0.0026 23.4 3.2 21 29-49 126-146 (169)
29 1fs1_B SKP1, cyclin A/CDK2-ass 20.7 64 0.0022 22.9 2.7 20 30-49 115-134 (141)
No 1
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=1.3e-65 Score=405.58 Aligned_cols=151 Identities=54% Similarity=0.786 Sum_probs=149.5
Q ss_pred CccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCC
Q 031778 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (153)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~ 80 (153)
|++||++|+||+++|+|++++++|||+|+++||++||||++++|+.||++||++|+||||+||||||||++|+++ |+|+
T Consensus 3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~ 81 (183)
T 4a17_Q 3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT 81 (183)
T ss_dssp CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 81 ~gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+||||+|||++|++||+||++||+++|||+|+|||+||+||+||+++|++|||+||++|+.+++|||||+|+
T Consensus 82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~ 153 (183)
T 4a17_Q 82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQ 153 (183)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEE
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=8.2e-65 Score=397.91 Aligned_cols=152 Identities=82% Similarity=1.194 Sum_probs=149.7
Q ss_pred CccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCC
Q 031778 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (153)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~ 80 (153)
|++||++|+||+++|+|+++++++||||+++||++||||++++|+.||++||++|+||||+||||||||++|++++|+|+
T Consensus 1 m~~Ys~~~~~~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~ 80 (171)
T 3iz5_V 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNG 80 (171)
T ss_dssp CCSCSSCCSCTTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCS
T ss_pred CCcccCCCCCCCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999448999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 81 ~gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+||||+|+|++|++||+||++||+++|||+|+|||+||+||+|++++|++|||+||++|+++++|||||+|+
T Consensus 81 ~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~ 152 (171)
T 3iz5_V 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152 (171)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEE
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.8e-64 Score=396.54 Aligned_cols=151 Identities=64% Similarity=0.996 Sum_probs=146.7
Q ss_pred CccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCC
Q 031778 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (153)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~ 80 (153)
|++||++|+||+++++|+++++++||+|+++||++||||++++|+.||+|||++|+||||+|||+||||++|+++ |+|+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~ 79 (184)
T 2zkr_r 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT 79 (184)
T ss_dssp -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 81 ~gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+||||+|+|++|++||+||++||+++|||+|+|||.||+||+|++++|++|||+||++|+++++|||||+|+
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~ 151 (184)
T 2zkr_r 80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 (184)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEE
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=2.6e-64 Score=398.79 Aligned_cols=151 Identities=58% Similarity=0.864 Sum_probs=148.6
Q ss_pred CccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCC
Q 031778 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (153)
Q Consensus 1 ~~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~ 80 (153)
|++||++|+||+++|+|+++++++||||+++||++||||++++|+.||++||++|+||||+||||||||++|+++ |+|+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~ 79 (184)
T 3u5e_P 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT 79 (184)
T ss_dssp -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 6999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 81 ~gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+||||+|+|++|++||+||++||+++|||+|+|||+||+||+|++++|++|||+||++|+.+++|||||+|+
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~ 151 (184)
T 3u5e_P 80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151 (184)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEE
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-63 Score=383.83 Aligned_cols=147 Identities=34% Similarity=0.467 Sum_probs=144.5
Q ss_pred ccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCC
Q 031778 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ 81 (153)
Q Consensus 2 ~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~ 81 (153)
|+||++|+||+++|+|+++++++||||+++||++||||++++|+.||++||++|+||||+|||+||||++| |+|++
T Consensus 5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~ 80 (155)
T 3j21_S 5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP 80 (155)
T ss_dssp -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 82 gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
||||+|+|++|++||+||++||+++|||+|+|||+||+||+|+++||++|||+||++|+.+++|||||+|+
T Consensus 81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~ 151 (155)
T 3j21_S 81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVE 151 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 6
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=7.7e-63 Score=381.63 Aligned_cols=147 Identities=31% Similarity=0.482 Sum_probs=145.0
Q ss_pred ccccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCC
Q 031778 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ 81 (153)
Q Consensus 2 ~~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~ 81 (153)
++||+ |+||+++++|+++++++||||+++||++||||++++|+.||++||++|+||||+|||+||||++|+ |+|++
T Consensus 3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~ 78 (155)
T 1vq8_R 3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA 78 (155)
T ss_dssp CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence 68999 999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 82 gr~p~KaA~~i~klL~sa~aNA~~kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
||||+|+|++|+|||+||++||+++|||+|+|||+||+||+|+++||++|||+||++|+++++|||||+|+
T Consensus 79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~ 149 (155)
T 1vq8_R 79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILE 149 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 7
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=2.2e-42 Score=253.69 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=104.3
Q ss_pred ceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHHH
Q 031778 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI 92 (153)
Q Consensus 13 ~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~i 92 (153)
|+++|.++++++||+|+++||++||||++++|+.+|+ |. |+|+|++|
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~---------------------------f~------pkkaa~~v 47 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------YT------NKKAAVLV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------HC------CCHHHHHH
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh---------------------------hC------CHHHHHHH
Confidence 5799999999999999999999999999999999999 76 99999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 93 ~klL~sa~aNA~~k-gld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+|+|+||++||+++ |+|+|+|||+||+||+||++||++|||+||++|+++++|||||+|+
T Consensus 48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ 108 (110)
T 3r8s_S 48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVS 108 (110)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEe
Confidence 99999999999986 9999999999999999999999999999999999999999999996
No 8
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=5.7e-40 Score=240.87 Aligned_cols=102 Identities=24% Similarity=0.283 Sum_probs=98.7
Q ss_pred eeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHHHHHHHH
Q 031778 18 RGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLK 97 (153)
Q Consensus 18 ~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~i~klL~ 97 (153)
.++++++||+|+++||++||||++++|+.+|+ |. |+|+|++|+|+|+
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f~------pkkaa~~v~klL~ 48 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------FN------DKKGAKIIKEVLL 48 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------HC------CHHHHHHHHHHHH
Confidence 35899999999999999999999999999999 76 9999999999999
Q ss_pred HHHHHHHH-cCCC-CCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 98 sa~aNA~~-kgld-~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
||++||++ +|+| +|+|||+||+||+|+++||++|||+||++++++++|||||+|+
T Consensus 49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~ 105 (110)
T 2ftc_M 49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLV 105 (110)
T ss_pred HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEE
Confidence 99999997 7999 8999999999999999999999999999999999999999986
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=6.6e-41 Score=253.55 Aligned_cols=108 Identities=21% Similarity=0.240 Sum_probs=104.6
Q ss_pred CceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHH
Q 031778 12 TKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKF 91 (153)
Q Consensus 12 ~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~ 91 (153)
+++++|.++++++||+|+++||++||||++++|+.+|+ |. |+|+|++
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~---------------------------f~------pkKaA~~ 67 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------FI------PRSASEP 67 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------HC------CCTTHHH
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH---------------------------HC------cHhHHHH
Confidence 46899999999999999999999999999999999999 65 9999999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 92 i~klL~sa~aNA~~-kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
|+|+|+||++||++ +|||+|+|||.||+||+|+++||++|||+||+++|++++|||+|+|+
T Consensus 68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~ 129 (134)
T 2zjr_P 68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVA 129 (134)
T ss_dssp HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEE
T ss_pred HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEE
Confidence 99999999999995 89999999999999999999999999999999999999999999985
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=3.8e-40 Score=241.82 Aligned_cols=104 Identities=24% Similarity=0.268 Sum_probs=100.9
Q ss_pred ceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHHH
Q 031778 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI 92 (153)
Q Consensus 13 ~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~i 92 (153)
++++|.++++++||+|+++||++||||++++|+.+|+ |. |+|+|++|
T Consensus 1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~---------------------------~~------pkkaa~~v 47 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------YT------NKRGAYFV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------HC------CCTTHHHH
T ss_pred CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------HC------CHHHHHHH
Confidence 4689999999999999999999999999999999999 65 99999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 93 ~klL~sa~aNA~~k-gld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
+|+|+||++||+++ |||+|+|||+||+||+||+ ++|||+||++|+++++|||||+|+
T Consensus 48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~ 105 (110)
T 1i4j_A 48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILG 105 (110)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEE
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEE
Confidence 99999999999986 9999999999999999999 999999999999999999999986
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.1e-41 Score=269.90 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=105.4
Q ss_pred cccCCCCCCCceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCC
Q 031778 3 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQG 82 (153)
Q Consensus 3 ~ys~~~~~~~~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~g 82 (153)
+||..|+||+++++|.++++++||+|+++||++||||++++|+.+|+ |.
T Consensus 20 ~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f~---- 68 (199)
T 3bbo_U 20 GLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------LM---- 68 (199)
T ss_dssp ----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------GC----
T ss_pred cCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------HC----
Confidence 57777899999999999999999999999999999999999999999 78
Q ss_pred CCcchhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEECCCccccCccccCCCCcccccccceeEEEEEe
Q 031778 83 RWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINRMFLVLFHLCLIFL 152 (153)
Q Consensus 83 r~p~KaA~~i~klL~sa~aNA~~-kgld~d~L~I~~i~v~kG~~~kr~~pRA~GRa~~~~k~~~hI~ivl~ 152 (153)
|+|+|.+|+|+|+||++||++ +|+|+|+|||+||+||+||++||++|||+||++||++++|||||+|+
T Consensus 69 --PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~ 137 (199)
T 3bbo_U 69 --PYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLR 137 (199)
T ss_dssp --CCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEE
T ss_pred --CHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEe
Confidence 999999999999999999998 79999999999999999999999999999999999999999999986
No 12
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=69.01 E-value=7.6 Score=27.96 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=49.9
Q ss_pred eEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCc--chhhHH
Q 031778 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWP--VKSAKF 91 (153)
Q Consensus 14 ~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p--~KaA~~ 91 (153)
.++-.+...-+|-==+..++++|+|++++||.++.++-+...-. -+| .++|..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~-------------------------l~p~r~~Ca~L 110 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELE-------------------------LPPVKIHCSIL 110 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHT-------------------------CCGGGGHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-------------------------CCccchhHHHH
Confidence 44555566667777788899999999999999887754322111 124 678999
Q ss_pred HHHHHHHHHHHHHHc
Q 031778 92 ILDLLKNAESNAEVK 106 (153)
Q Consensus 92 i~klL~sa~aNA~~k 106 (153)
-.+.|+.|+.+.+.+
T Consensus 111 a~~Al~~Al~~y~~k 125 (129)
T 3lvl_A 111 AEDAIKAAIADYKSK 125 (129)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998754
No 13
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=67.38 E-value=11 Score=25.13 Aligned_cols=35 Identities=14% Similarity=0.339 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcccccccee
Q 031778 27 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTR 62 (153)
Q Consensus 27 kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r 62 (153)
+.+..++..+ |++..+|+.++-.=+.....+||.-
T Consensus 14 ~~a~~v~~~l-Gl~~s~Ai~~fl~~v~~~~~iPF~~ 48 (79)
T 4fxe_A 14 ARSYAALEKM-GVTPSEALRLMLEYIADNERLPFKQ 48 (79)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCcc
Confidence 3577888888 9999999999888888888999853
No 14
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=57.57 E-value=4.7 Score=25.45 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=13.1
Q ss_pred HhCCCHHHHHHHHHHH
Q 031778 36 IRKLPLTKAKRYLEDV 51 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V 51 (153)
++=|+++||+.+|+.+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5679999999999954
No 15
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=52.29 E-value=6.7 Score=25.49 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.3
Q ss_pred HhCCCHHHHHHHHHHH
Q 031778 36 IRKLPLTKAKRYLEDV 51 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V 51 (153)
++=|+++||+.+|+.+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3568999999999954
No 16
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=50.74 E-value=24 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.6
Q ss_pred HhCCCHHHHHHHHHHHHhcc
Q 031778 36 IRKLPLTKAKRYLEDVMAHK 55 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V~~kk 55 (153)
+.||+++||+..|+..+..-
T Consensus 5 LHGl~v~eA~~~l~~~l~~~ 24 (82)
T 3fau_A 5 LHGLHVDEALEHLMRVLEKK 24 (82)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 36999999999998887753
No 17
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=45.50 E-value=31 Score=25.68 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=48.4
Q ss_pred eEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHHHH
Q 031778 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFIL 93 (153)
Q Consensus 14 ~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~i~ 93 (153)
.++-.+...-+|-==+..++.+|+|++++||..+.++-+...- ++ +. .. -.++|..-.
T Consensus 55 d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L--------g~----------l~--p~--R~~Ca~La~ 112 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL--------GG----------LP--PQ--KIHCTNLGL 112 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH--------TC----------CC--CS--SCCTTCCHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh--------cc----------cC--cc--hhHhHHHHH
Confidence 4555666777777788899999999999999988764322110 11 00 11 266777888
Q ss_pred HHHHHHHHHHHH
Q 031778 94 DLLKNAESNAEV 105 (153)
Q Consensus 94 klL~sa~aNA~~ 105 (153)
+.|+.|+.+++.
T Consensus 113 ~Al~~Al~~y~~ 124 (157)
T 2z7e_A 113 ETLHVAIKDYLM 124 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999888865
No 18
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=43.91 E-value=11 Score=25.26 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=24.3
Q ss_pred HhCCCHHHHHHHHHHHHhcc-------ccccceeecCCCccccc
Q 031778 36 IRKLPLTKAKRYLEDVMAHK-------QAIPFTRFCGGVGRTAQ 72 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V~~kk-------~~vPf~r~~~~v~~~~~ 72 (153)
+.||+++||+..|+..++.- .-++.-+-=-|.|.++.
T Consensus 13 LHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~ 56 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQ 56 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCC
Confidence 36999999999998887642 23333344345565553
No 19
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=43.66 E-value=6.7 Score=25.54 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=12.0
Q ss_pred hCCCHHHHHHHHHH
Q 031778 37 RKLPLTKAKRYLED 50 (153)
Q Consensus 37 RG~~v~~A~~~L~~ 50 (153)
+=|+++||+.+|+.
T Consensus 12 kpMsveEAv~qMel 25 (66)
T 3lyv_A 12 KPMDVEEARLQMEL 25 (66)
T ss_dssp CEECHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 45899999999994
No 20
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=36.66 E-value=1e+02 Score=22.77 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=47.5
Q ss_pred eEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHHHhccccccceeecCCCccccccccCCCCCCCCCcchhhHHHH
Q 031778 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFIL 93 (153)
Q Consensus 14 ~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p~KaA~~i~ 93 (153)
.++-.+...-+|-==+..++++|+|++++||..+..+-+.. .-+|+ . .. -.++|..-.
T Consensus 50 D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~--------~L~gl----------p--p~--Ri~CA~La~ 107 (153)
T 4eb5_C 50 DIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAE--------ALGGL----------P--KQ--KMHCSNLAA 107 (153)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHH--------HHTCC----------C--TT--SHHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH--------HhcCC----------C--cc--hhHHHHHHH
Confidence 34445555666677788899999999999999775532211 00111 1 00 378899999
Q ss_pred HHHHHHHHHHHH
Q 031778 94 DLLKNAESNAEV 105 (153)
Q Consensus 94 klL~sa~aNA~~ 105 (153)
+.|+.|+.+...
T Consensus 108 ~AL~~Al~~y~~ 119 (153)
T 4eb5_C 108 DALRRAIVDYFR 119 (153)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 21
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=35.05 E-value=37 Score=24.49 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=29.4
Q ss_pred eEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHH
Q 031778 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDV 51 (153)
Q Consensus 14 ~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V 51 (153)
.++-.+...-+|-==+..++++|+|++++||.++.+..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 56 DIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34445555666666778899999999999999998754
No 22
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=33.55 E-value=31 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=23.7
Q ss_pred HhCCCHHHHHHHHHHHHhcc-------ccccceeecCCCcccc
Q 031778 36 IRKLPLTKAKRYLEDVMAHK-------QAIPFTRFCGGVGRTA 71 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V~~kk-------~~vPf~r~~~~v~~~~ 71 (153)
+.||+++||+..|+..|+.- .-++.-+-=-|.|.++
T Consensus 58 LHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~hS 100 (135)
T 2vkc_A 58 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHS 100 (135)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCSSS
T ss_pred eCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCcCC
Confidence 46999999999998887653 2344334444555544
No 23
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=33.54 E-value=40 Score=24.61 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=48.4
Q ss_pred ceEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHH---HhccccccceeecCCCccccccccCCCCCCCCCc--ch
Q 031778 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDV---MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWP--VK 87 (153)
Q Consensus 13 ~~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V---~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p--~K 87 (153)
..++-.+...-+|-==+...+++|+|++++||.++.+.. +..+...|-... ++. .. | .+...|| .+
T Consensus 57 ~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l-~~l---~~----l-~~v~~~p~R~~ 127 (147)
T 1xjs_A 57 EDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDL-GDI---EA----L-QGVSKFPARIK 127 (147)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCC-HHH---HH----H-HHHTTSTTTHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhh-chh---hh----h-cCcccCcchhH
Confidence 345556666777777788999999999999999987742 222222211000 000 00 0 0001234 67
Q ss_pred hhHHHHHHHHHHHHH
Q 031778 88 SAKFILDLLKNAESN 102 (153)
Q Consensus 88 aA~~i~klL~sa~aN 102 (153)
+|..-.+.|+.|..+
T Consensus 128 Ca~La~~Al~~Al~~ 142 (147)
T 1xjs_A 128 CATLSWKALEKGVAK 142 (147)
T ss_dssp HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888999888754
No 24
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=31.49 E-value=24 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.3
Q ss_pred HhCCCHHHHHHHHHHHHh
Q 031778 36 IRKLPLTKAKRYLEDVMA 53 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V~~ 53 (153)
++||+++||...|++-|+
T Consensus 9 LhG~~~~eA~~~l~~fl~ 26 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALE 26 (83)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999997665
No 25
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=29.16 E-value=46 Score=24.64 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=49.0
Q ss_pred eEEEeeCCcccchhHHHHHHHHHhCCCHHHHHHHHHHH---HhccccccceeecCCCccccccccCCCCCCCCCc--chh
Q 031778 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDV---MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWP--VKS 88 (153)
Q Consensus 14 ~~kA~~~~~rvS~kk~~~va~~IRG~~v~~A~~~L~~V---~~kk~~vPf~r~~~~v~~~~~~~~~~~~~~gr~p--~Ka 88 (153)
.++-.+...-+|-==+..++++|+|++++||..+.+.. +..+...|-... ++..- | .+...|| .++
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L-~~l~~-------l-~gv~~~p~R~~C 127 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKEL-GEAEL-------L-AGVAKFPQRIKC 127 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGG-GGGGG-------G-GGGGGCHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhh-chhhh-------h-cCcccCcchhHH
Confidence 44555566667777788899999999999999998752 222222211000 00000 0 0111235 678
Q ss_pred hHHHHHHHHHHHHHH
Q 031778 89 AKFILDLLKNAESNA 103 (153)
Q Consensus 89 A~~i~klL~sa~aNA 103 (153)
|..-.+.|+.|+.+.
T Consensus 128 a~La~~Al~~Al~~~ 142 (159)
T 1su0_B 128 STLAWNALKEAIKRS 142 (159)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 888889999998764
No 26
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=24.22 E-value=30 Score=21.48 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=13.5
Q ss_pred HhCCCHHHHHHHHHH
Q 031778 36 IRKLPLTKAKRYLED 50 (153)
Q Consensus 36 IRG~~v~~A~~~L~~ 50 (153)
+.||++++|.+.|++
T Consensus 13 v~G~~~~~A~~~L~~ 27 (71)
T 3ouv_A 13 VAGQTVDVAQKNMNV 27 (71)
T ss_dssp CTTCBHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 469999999999996
No 27
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=22.33 E-value=42 Score=24.32 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=16.1
Q ss_pred HhCCCHHHHHHHHHHHHhc
Q 031778 36 IRKLPLTKAKRYLEDVMAH 54 (153)
Q Consensus 36 IRG~~v~~A~~~L~~V~~k 54 (153)
++||+++||...|..-|..
T Consensus 52 LHG~~~~EA~~~L~~fL~~ 70 (137)
T 3qd7_X 52 LLRQPVEECRKMVFSFIQQ 70 (137)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4699999999999987664
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=20.69 E-value=77 Score=23.37 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHH
Q 031778 29 TRETAHAIRKLPLTKAKRYLE 49 (153)
Q Consensus 29 ~~~va~~IRG~~v~~A~~~L~ 49 (153)
+..||+.|+|++.++-.+++.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHcC
Confidence 355889999999988887776
No 29
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=20.67 E-value=64 Score=22.91 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 031778 30 RETAHAIRKLPLTKAKRYLE 49 (153)
Q Consensus 30 ~~va~~IRG~~v~~A~~~L~ 49 (153)
..||+.|+|++.+|-.+++.
T Consensus 115 ~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 115 KTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHcC
Confidence 46889999999988666554
Done!