RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031778
         (153 letters)



>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score =  143 bits (363), Expect = 2e-45
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINRMFLVLFHLCLI 150
           +  +Q+ R  RA GR +        + LI
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELI 146


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 34/125 (27%)

Query: 17  ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNR 76
           A+    R   +  R  A  IR   +++A   L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                     K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA G
Sbjct: 34  ------YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG 87

Query: 136 RINRM 140
           R +R+
Sbjct: 88  RADRI 92


>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 49.4 bits (118), Expect = 5e-09
 Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 34/139 (24%)

Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTR 62
           K  K+     K   A    +R+  +  R     IR   +  A+  L              
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR------------- 51

Query: 63  FCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVN 121
                                 P  +++ +  +L +A++NA     +  D L++    V+
Sbjct: 52  --------------------FIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVD 91

Query: 122 QAQKQRRRTYRAHGRINRM 140
                +R   RA G  N +
Sbjct: 92  AGPTLKRLIPRARGSANII 110


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 34/127 (26%)

Query: 16  KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN 75
           KA    +R+  +  R     IR   L +A+  L                           
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILR-------------------------- 37

Query: 76  RHPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAH 134
                      + A F+  +L++A +NA        D LY+    V++      R     
Sbjct: 38  -------YTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPRARGRA 90

Query: 135 GRINRMF 141
             I +  
Sbjct: 91  DIIKKRT 97


>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia
           coli [TaxId: 562]}
          Length = 200

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 5/42 (11%), Positives = 14/42 (33%)

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHI 118
                     + + + ++  +   S  E+   D+ A  I  +
Sbjct: 9   SILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVL 50


>d1qb5d_ b.40.2.1 (D:) Heat-labile toxin {Escherichia coli, type
          IIB [TaxId: 562]}
          Length = 99

 Score = 25.0 bits (54), Expect = 2.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 25 HFKN--TRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPN 79
           FK+   R TA  +  + LTK   Y+ D+  +   +      GGV R ++AK+   N
Sbjct: 5  FFKDNCNRTTASLVEGVELTK---YISDINNNTDGMYVVSSTGGVWRISRAKDYPDN 58


>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 21.9 bits (46), Expect = 9.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 17 ARGSDLRVHFKN 28
          AR SDL VH + 
Sbjct: 13 ARKSDLGVHLRK 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 547,914
Number of extensions: 22580
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 11
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)