BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031779
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 96 VTEVFRNLKVEKKFRLAKLGFY 117
V+EV N+ E+K +L K+G+Y
Sbjct: 147 VSEVSNNIDAEEKAKLGKIGYY 168
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 96 VTEVFRNLKVEKKFRLAKLGFY 117
V+EV N+ E+K +L K+G+Y
Sbjct: 151 VSEVSNNIDAEEKAKLGKIGYY 172
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 32 AAMADTFLEHLCLLDIDSEPV 52
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 32 AAMADTFLEHLCLLDIDSEPV 52
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
Length = 528
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 17 ALIASTFYQLLCLLDLESDDI 37
A +A TF + LCLLD++S+ +
Sbjct: 17 AAMADTFLEHLCLLDIDSEPV 37
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 69 HWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYV---IFFALVI 125
+WIM LL L+ Y V KR + V E F + ++ RL +LGF V +FF + +
Sbjct: 203 YWIMLLL---LLFYIVT--SKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTL 257
Query: 126 ANIIAV 131
++A+
Sbjct: 258 FAVVAL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.334 0.147 0.471
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,859,530
Number of Sequences: 62578
Number of extensions: 123905
Number of successful extensions: 367
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 9
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.7 bits)