BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031779
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180
PE=2 SV=1
Length = 146
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 93/140 (66%)
Query: 1 MALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLF 60
MA W + +++AL+AS FYQ++CL DLE+D +NPFE S+RIN V PEF+LQG
Sbjct: 1 MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60
Query: 61 CILLLVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIF 120
C+L L+T HW+ FL+ VP+ YH LY +R++LIDVTEVFR + EKK R KLGFYV
Sbjct: 61 CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120
Query: 121 FALVIANIIAVGKFWVSHSD 140
F +V+ + + + D
Sbjct: 121 FIMVVFRLTLSAVYSFTEDD 140
>sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090
PE=2 SV=2
Length = 135
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 8/128 (6%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
LI YQL CL DLE D INP++ SSRIN V PEF LQGL C+ ++TGHW M +L
Sbjct: 16 TLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLS 75
Query: 77 VPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIANIIAVGKFWV 136
+P + Y++ LYMKR+HL DVTE++ K E+K R+ K+G IA I + +W+
Sbjct: 76 LPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGH--------IALSIFITTYWL 127
Query: 137 SHSDFGDL 144
HS GD+
Sbjct: 128 IHSALGDI 135
>sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390
PE=1 SV=1
Length = 137
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 85/130 (65%), Gaps = 8/130 (6%)
Query: 16 IALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLL 75
IAL+ YQL+CL DLE D INP++++SRIN V PEF++QG+ C+ L+TGHW M LL
Sbjct: 15 IALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLL 74
Query: 76 GVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIANIIAVGKFW 135
+P + Y+ +LY KR+HL+DVTE+F L EKK RL KL + V+ L I FW
Sbjct: 75 CLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTI--------FW 126
Query: 136 VSHSDFGDLD 145
+ +S D +
Sbjct: 127 MIYSALDDYE 136
>sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880
PE=2 SV=1
Length = 137
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 24 YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
YQL+ L DLE D INP++++SRINF V PE +LQG C+ LVTGHW M LL VP + Y+
Sbjct: 23 YQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYN 82
Query: 84 VNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIANIIAVGKFWVSHSDFGD 143
+LY +++HLIDVTE+F L EKK RL KL + ++ L I FW+ +S D
Sbjct: 83 FHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTI--------FWLIYSTLDD 134
Query: 144 LD 145
+
Sbjct: 135 YE 136
>sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana
GN=At1g12340 PE=2 SV=2
Length = 129
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 83/127 (65%), Gaps = 8/127 (6%)
Query: 19 IASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVP 78
+A+ + L+CL DLE D INP++++SRIN V PEF++QG+ C+ L+TGHW M LL +P
Sbjct: 10 LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69
Query: 79 LVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFFALVIANIIAVGKFWVSH 138
+ Y+ +LY KR+HL+DVTE+F L EKK RL KL + V+ L I FW+ +
Sbjct: 70 YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTI--------FWMIY 121
Query: 139 SDFGDLD 145
S D +
Sbjct: 122 SALDDYE 128
>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3
Length = 138
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 57/91 (62%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
DLE+D INP E S++N + PE L G +L L+ G+W +FLL +P++ Y++N +
Sbjct: 29 DLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLNKIYNK 88
Query: 91 KHLIDVTEVFRNLKVEKKFRLAKLGFYVIFF 121
L+D TE+FR L K+ KLGF+++ F
Sbjct: 89 VQLLDATEIFRTLGKHKRESFLKLGFHLLMF 119
>sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1
Length = 142
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
DLE+D IN E R+N PE +LQ L L G+W +FLL VP++ Y+ + K+
Sbjct: 32 DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKK 91
Query: 91 KHLIDVTEVFRNLKVEKKFRLAKLG 115
HL+D T++FR L K KLG
Sbjct: 92 THLLDATDIFRKLGRCKIECFLKLG 116
>sp|O14038|YEY5_SCHPO Uncharacterized protein C2C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.05 PE=3 SV=1
Length = 134
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
DL+ D INP + S ++N++V PE Q +LLL++G WI FLL VP++ ++ + M
Sbjct: 30 DLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAWNAKMIMSN 89
Query: 91 KHLIDVTEVFRNLKVEKKFRLAKLG 115
H+ D T +F+++ +K KL
Sbjct: 90 THMHDSTTIFKDVSSRQKRSFFKLA 114
>sp|Q9CX13|CNIH4_MOUSE Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1
Length = 139
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 2 ALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFC 61
A++FLF L ALI + Y ++ L DLE D IN S++N WV PE + +
Sbjct: 3 AVVFLFSLLDCC---ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVT 59
Query: 62 ILLLVTGHWIMFLLGVPLVCYHVNLYM----KRKHLIDVTEVFR--NLKVEKKFRLAKLG 115
+L+LV+ HW +FLL +P+ +++ ++ + D TE+ LK K + KLG
Sbjct: 60 VLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLG 119
Query: 116 FYVIFFALVIANII 129
FY++ F + + ++I
Sbjct: 120 FYLLCFFMYLYSMI 133
>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1
Length = 139
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 2 ALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFC 61
A++F+F L ALI + Y ++ L DLE D IN S++N WV PE + L
Sbjct: 3 AVVFVFSLLDCC---ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTLVT 59
Query: 62 ILLLVTGHWIMFLLGVPLVCYHVNLYM----KRKHLIDVTEVFR--NLKVEKKFRLAKLG 115
+L+L++ HW +FLL +P+ +++ Y+ + D TE+ LK K + KLG
Sbjct: 60 VLMLISLHWFIFLLNLPVAAWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLG 119
Query: 116 FYVIFFALVIANII 129
F+++ F + + ++I
Sbjct: 120 FHLLCFFMYLYSMI 133
>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1
Length = 139
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 2 ALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFC 61
A++F+F L ALI + Y ++ L DLE D IN S++N WV PE + +
Sbjct: 3 AVVFVFSLLDCC---ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVT 59
Query: 62 ILLLVTGHWIMFLLGVPLVCYHVNLYM----KRKHLIDVTEVFR--NLKVEKKFRLAKLG 115
+LLL++ HW +FLL +P+ +++ Y+ + D TE+ LK K + KLG
Sbjct: 60 VLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLG 119
Query: 116 FYVIFFALVIANII 129
F+++ F + + ++I
Sbjct: 120 FHLLCFFMYLYSMI 133
>sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1
Length = 139
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 2 ALIFLFWFLMSAINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFC 61
A++F+F L ALI + Y ++ L DLE D IN S++N WV PE + +
Sbjct: 3 AVVFVFSLLDCC---ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELIGHTIVT 59
Query: 62 ILLLVTGHWIMFLLGVPLVCYHVNLYM----KRKHLIDVTEVFR--NLKVEKKFRLAKLG 115
+LLL++ HW +FLL +P+ +++ Y+ + D TE+ LK K + KLG
Sbjct: 60 VLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLG 119
Query: 116 FYVIFFALVIANII 129
F+++ F + + ++I
Sbjct: 120 FHLLCFFMYLYSMI 133
>sp|Q6P3N5|CNIH4_XENTR Protein cornichon homolog 4 OS=Xenopus tropicalis GN=cnih4 PE=2
SV=1
Length = 139
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 17 ALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
ALI + Y ++ L DLE D IN S++N WV PE + + +L+LV+ HW +F+L
Sbjct: 15 ALIFLSVYFIITLSDLECDYINARSCCSKLNKWVVPELVGHTVVSVLMLVSLHWFIFILN 74
Query: 77 VPLVCYHVNLYMKRKH----LIDVTEVFR--NLKVEKKFRLAKLGFYVIFF 121
+P+ +++ ++ + D TE+ LK K + KLGF+++ F
Sbjct: 75 LPVAAWNIYRFIMVPSGNLGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCF 125
>sp|Q22361|YFR3_CAEEL Uncharacterized protein T09E8.3 OS=Caenorhabditis elegans
GN=T09E8.3 PE=3 SV=2
Length = 145
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALIA F Y ++C+ +L +D NP E +N + PE+++ G F +L + +
Sbjct: 12 LALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLILPEYIIHGTFTVLFIFSWQ 71
Query: 70 WIMFLLGVPLVCYHVNLYMKR-----KHLIDVTEVFRNLKVEKKFRLA--KLGFYVIFF 121
I L +PL YH+ Y KR + D T + + R++ KL FY++ F
Sbjct: 72 LISILANLPLAFYHIYTYAKRPVMSGPGIYDPTTILNRSTLSSTLRISWIKLAFYLVSF 130
>sp|Q5RDB5|CNIH_PONAB Protein cornichon homolog OS=Pongo abelii GN=CNIH PE=2 SV=1
Length = 144
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+ YM R
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSR 92
Query: 91 -----KHLIDVTEVFRN--LKVEKKFRLAKLGFYVIFFALVIANIIAV 131
L D T + L +K KL FY++ F + +I V
Sbjct: 93 PVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYV 140
>sp|O35372|CNIH_MOUSE Protein cornichon homolog OS=Mus musculus GN=Cnih PE=2 SV=2
Length = 144
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+ YM R
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSR 92
Query: 91 -----KHLIDVTEVFRN--LKVEKKFRLAKLGFYVIFFALVIANIIAV 131
L D T + L +K KL FY++ F + +I V
Sbjct: 93 PVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYV 140
>sp|O95406|CNIH_HUMAN Protein cornichon homolog OS=Homo sapiens GN=CNIH PE=1 SV=1
Length = 144
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+ YM R
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSR 92
Query: 91 -----KHLIDVTEVFRN--LKVEKKFRLAKLGFYVIFFALVIANIIAV 131
L D T + L +K KL FY++ F + +I V
Sbjct: 93 PVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYV 140
>sp|Q5BIN6|CNIH_BOVIN Protein cornichon homolog OS=Bos taurus GN=CNIH PE=2 SV=1
Length = 144
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 31 DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKR 90
+L++D NP + + +N V PE+L+ FC++ L W+ L +PL+ YH+ YM R
Sbjct: 33 ELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSR 92
Query: 91 -----KHLIDVTEVFRN--LKVEKKFRLAKLGFYVIFFALVIANIIAV 131
L D T + L +K KL FY++ F + +I V
Sbjct: 93 PVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYV 140
>sp|Q9P6K6|ERV14_SCHPO ER-derived vesicles protein erv14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erv14 PE=3 SV=2
Length = 137
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 20 ASTFYQLLCLL---DLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGHWIMFLLG 76
A+ Q+ C++ DLE D INP + +++N V PE + L +LLL+ W++FL
Sbjct: 18 ANMLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLAN 77
Query: 77 VPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKFRLAKLGFYVIFF 121
+PL+ +H N + + H++D TE+FR L K+ K+ FY+I F
Sbjct: 78 LPLLVFHANQVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIMF 122
>sp|P49858|CNI_DROME Protein cornichon OS=Drosophila melanogaster GN=cni PE=1 SV=1
Length = 144
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALI F + ++ +L++D NP + + +N V PE+LL +L L G
Sbjct: 12 VALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHIFLNLLFLFCGE 71
Query: 70 WIMFLLGVPLVCYHVNLYMKR-----KHLIDVTEVFRNLKVEKKFRLA--KLGFYVIFFA 122
W + +PL+ YH+ Y R L D T V + + + R KL Y+I F
Sbjct: 72 WFSLCINIPLIAYHIWRYKNRPVMSGPGLYDPTTVLKTDTLYRNMREGWIKLAVYLISFF 131
Query: 123 LVIANII 129
I ++
Sbjct: 132 YYIYGMV 138
>sp|Q5BL21|CNIH2_DANRE Protein cornichon homolog 2 OS=Danio rerio GN=cnih2 PE=2 SV=1
Length = 160
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 35 DDINPFEASSRI----------NFWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A RI V PE+ + GLFC++ + G W+ L +PL+ YH+
Sbjct: 43 DQSNPTRARERILNIERICNLLRRLVVPEYSIHGLFCLMFMCAGEWVTLGLNIPLLLYHL 102
Query: 85 NLYMKRKHLIDVTEVFRN---------LKVEKKFRLAKLGFYVIFF 121
+ R D +EV + L +K KLGFY++ F
Sbjct: 103 WRFFHRP--ADGSEVMYDPVSVMNADILNYCQKESWCKLGFYLLSF 146
>sp|P52159|CNI_DROVI Protein cornichon OS=Drosophila virilis GN=cni PE=3 SV=2
Length = 144
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 16 IALIASTF------YQLLCLLDLESDDINPFEASSRINFWVEPEFLLQGLFCILLLVTGH 69
+ALI F + ++ +L++D NP + + +N V PE+LL +L L G
Sbjct: 12 VALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNPLVLPEYLLHLFLNLLFLFCGE 71
Query: 70 WIMFLLGVPLVCYHVNLYMKR-----KHLIDVTEVFRNLKVEKKFRLA--KLGFYVIFF 121
W L +PL+ YH+ Y R L D T V + + + R KL Y+I F
Sbjct: 72 WYSLCLNIPLIAYHIWRYKNRPLMSGPGLYDPTTVLKTDTLSRNLREGWIKLAVYLISF 130
>sp|Q5BJU5|CNIH2_RAT Protein cornichon homolog 2 OS=Rattus norvegicus GN=Cnih2 PE=1 SV=1
Length = 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 35 DDINPFEASSRINF----------WVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
Query: 85 NLYMKRKHLIDVTEVFRN---------LKVEKKFRLAKLGFYVIFF 121
Y R D +EV + L +K KL FY++ F
Sbjct: 103 WRYFHRP--ADGSEVMYDAVSIMNADILNYCQKESWCKLAFYLLSF 146
>sp|O35089|CNIH2_MOUSE Protein cornichon homolog 2 OS=Mus musculus GN=Cnih2 PE=1 SV=2
Length = 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 35 DDINPFEASSRINF----------WVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
Query: 85 NLYMKRKHLIDVTEVFRN---------LKVEKKFRLAKLGFYVIFF 121
Y R D +EV + L +K KL FY++ F
Sbjct: 103 WRYFHRP--ADGSEVMYDAVSIMNADILNYCQKESWCKLAFYLLSF 146
>sp|Q6PI25|CNIH2_HUMAN Protein cornichon homolog 2 OS=Homo sapiens GN=CNIH2 PE=1 SV=1
Length = 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 35 DDINPFEASSRINF----------WVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHV 84
D NP A R+ V PE+ + GLFC++ L W+ L +PL+ YH+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHL 102
Query: 85 NLYMKRKHLIDVTEVFRN---------LKVEKKFRLAKLGFYVIFF 121
Y R D +EV + L +K KL FY++ F
Sbjct: 103 WRYFHRP--ADGSEVMYDAVSIMNADILNYCQKESWCKLAFYLLSF 146
>sp|Q68EY2|CNIH2_XENLA rotein cornichon homolog 2 OS=Xenopus laevis GN=cnih2 PE=2 SV=1
Length = 162
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 21/116 (18%)
Query: 38 NPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLY 87
NP A RI V PE+ + GLFC++ + W+ L +PL+ YH+ Y
Sbjct: 46 NPSRARERIKNVERVCCLLRKLVVPEYCIHGLFCLMFMCAAEWVTLGLNIPLLFYHLWRY 105
Query: 88 MKRKHLIDVTEVFRN---------LKVEKKFRLAKLGFYVIFFALVIANIIAVGKF 134
R D +EV + L +K KL FY++ F + + A ++
Sbjct: 106 FHRP--ADGSEVMFDPVSIMNVDILNYCQKEAWCKLAFYLLSFFYYLYRVGATVRY 159
>sp|Q0VFK3|CNIH2_XENTR Cornichon homolog 2 OS=Xenopus tropicalis GN=cnih2 PE=2 SV=1
Length = 162
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 50 VEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYHVNLYMKRKHLIDVTEVFRN------- 102
V PE+ + GLFC++ + W+ L +PL+ YH+ Y R D +EV +
Sbjct: 68 VVPEYCIHGLFCLMFMCAAEWVTLGLNIPLLFYHLWRYFHRP--ADGSEVMFDPVSIMNV 125
Query: 103 --LKVEKKFRLAKLGFYVIFFALVIANIIAVGKF 134
L +K KL FY++ F + + A ++
Sbjct: 126 DILNYCQKEAWCKLAFYLLSFFYYLYRVGATVRY 159
>sp|Q6ZWS4|CNIH3_MOUSE Protein cornichon homolog 3 OS=Mus musculus GN=Cnih3 PE=2 SV=1
Length = 160
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFCI+ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYH 101
>sp|Q8TBE1|CNIH3_HUMAN Protein cornichon homolog 3 OS=Homo sapiens GN=CNIH3 PE=2 SV=1
Length = 160
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFCI+ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYH 101
>sp|D0Q0Y7|CNIH3_RAT Protein cornichon homolog 3 OS=Rattus norvegicus GN=Cnih3 PE=1 SV=1
Length = 160
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWIMFLLGVPLVCYH 83
D NP A R+ V PE+ + LFC++ L W+ L VPL+ YH
Sbjct: 43 DQCNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCVMFLCAQEWLTLGLNVPLLFYH 101
>sp|C3MU99|NFI_SULIM Endonuclease V OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka
#1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3N187|NFI_SULIA Endonuclease V OS=Sulfolobus islandicus (strain M.16.27) GN=nfi
PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|Q97VZ6|NFI_SULSO Endonuclease V OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM
1617 / JCM 11322 / P2) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3N977|NFI_SULIY Endonuclease V OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3NMU5|NFI_SULIN Endonuclease V OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C3MKC9|NFI_SULIL Endonuclease V OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen
#1) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|C4KKT0|NFI_SULIK Endonuclease V OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka
#3) GN=nfi PE=3 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 13 AINIALIASTFYQLLCLLDLESDDINPFEASSRINFWVEPEFL-----------LQGLFC 61
++IA + + + +D+ S D N +NF P FL ++GL C
Sbjct: 36 GVDIAYKGNLGFSVGVSMDINSGDYNYKSYVGEVNFPYIPGFLFMREAPLMIKAIEGLDC 95
Query: 62 ILLLVTGHWI 71
LLLV GH I
Sbjct: 96 HLLLVDGHGI 105
>sp|A0LG71|UPPP_SYNFM Undecaprenyl-diphosphatase OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=uppP PE=3 SV=1
Length = 281
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 69 HWIMFLLGVPLVCYHVNLYMKRKHLIDVT------EVFRNLKVEKKFRLAKLGFYVIFFA 122
HW F+ + L L + ++D++ VFR ++ + + ++KLG+YVI +
Sbjct: 44 HWTAFIAVIQLGTMAAVLIYFARDVLDISLTFLEENVFRRMRFKDQSHVSKLGWYVILGS 103
Query: 123 LVIAN 127
L +A
Sbjct: 104 LPVAT 108
>sp|Q401C0|CNIH2_CHICK Protein cornichon homolog 2 OS=Gallus gallus GN=CNIH2 PE=1 SV=1
Length = 160
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 35 DDINPFEASSRIN----------FWVEPEFLLQGLFCILLLVTGHWI 71
D NP A R+ V PE+ + GLFC++ L W+
Sbjct: 43 DQGNPARARERLKNIERICCLLRKLVVPEYCIHGLFCLMFLCAAEWV 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.336 0.149 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,226,769
Number of Sequences: 539616
Number of extensions: 1905759
Number of successful extensions: 6556
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6521
Number of HSP's gapped (non-prelim): 45
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.2 bits)