BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031780
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ DE+ SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 58 XXXXXXXXKVVDIVDTFRLQR--------------FIKLLTPKLSEERQEIFKKNIEGAT 103
V DIV LQ ++K + KL E+R E K + GA
Sbjct: 61 GTESTVITGV-DIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAA 119
Query: 104 ---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 153
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 120 EQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ DE+ SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 3 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 62
Query: 58 XXXXXXXXKVVDIVDTFRLQR--------------FIKLLTPKLSEERQEIFKKNIEGAT 103
V DIV LQ ++K + KL E+R E K + GA
Sbjct: 63 GTESTVITGV-DIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAA 121
Query: 104 ---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 153
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 122 EQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 174
>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
Length = 168
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 21/166 (12%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV-VQGAVDVDIGANPSXXXXXXXXX 59
ML+Y+D+++GDEL+SD++ KE+++ I++E + + V V+ DVDIGANPS
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDD-IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAE 59
Query: 60 XXXXXXKVVDIVDTFRL--------------QRFIKLLTPKLSE---ERQEIFKKNIEGA 102
V ++V +FRL + ++K + +L E ER +F+KN G
Sbjct: 60 EGTET--VNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 103 TKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADAL 148
K +L+ D F++GESM D +V Y+E P ++ D L
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGL 163
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXX 57
M++Y+DL++ D + SD + +EI +G+ EVEGK V + ++D IG N S
Sbjct: 1 MIIYRDLISHDVMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 58 XXXXXXXXKVVDIVDTFRLQR--------------FIKLLTPKLSEERQEIFKKNIEGAT 103
V DIV LQ ++K + KL E+R E K + GA
Sbjct: 61 GTESTVITGV-DIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAA 119
Query: 104 ---KFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 153
K +L+ + QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 120 EQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 28/175 (16%)
Query: 1 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXX 55
M VY+D+ T DE+ SDS+ P+ + I +EV+ ++G D I N
Sbjct: 1 MKVYKDVFTNDEVCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDG 60
Query: 56 XXXXXXXXXXKVVDIVDTFRL------------------QRFIKLLTPKLSEERQEIFKK 97
+V+DIVD+F+L Q+ +K L K +R ++FK
Sbjct: 61 MGADVE----QVIDIVDSFQLTSTSLSKKEYSVYIKNYMQKILKYLEEK-KPDRVDVFKT 115
Query: 98 NIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 152
+ K +L+ D +F++GES+ D L ++YYK P F+YI+D L E K
Sbjct: 116 KAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170
>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
Protein (Tctp) Of Plasmodium Falciparum
Length = 183
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 1 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXX 55
M V++D+ T DE+ SDS+ P++ E I +EV+ ++G D I N
Sbjct: 5 MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEG 64
Query: 56 XXXXXXXXXXKVVDIVDTFRLQR----------FIKLLTPKLSE-------ERQEIFKKN 98
V+DIVD+F+L +IK K+++ +R EIFK
Sbjct: 65 MGADVE----HVIDIVDSFQLTSTAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTK 120
Query: 99 IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 152
+ K +L+ D +F++GES+ + ++++YYK P F+YI+D L E K
Sbjct: 121 AQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 174
>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
Translationally Controlled Tumor Protein (Tctp) From
C.Elegans, Northeast S Genomics Consortium Target Wr73
pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
Translationally- Controlled Tumor Protein (Tctp) From
Caenorhabditis Elegans, Northeast Structural Genomics
Consortium Target Wr73
Length = 189
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXX 59
ML+Y+D+ T DEL SDSFP K +++ +++E +GK VV+ ++ + G+NPS
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDD-LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDG 59
Query: 60 XXXXXXKVVDIVDTFRL----------------QRFIKLLTPKLSEERQ-----EIFKKN 98
+ +DIV +L ++F+K + + + + + FKK
Sbjct: 60 SDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKK 119
Query: 99 IEGATKFLLSK--LSDLQFFVGESM---HDDGCLVFAYYK--EGATDPTFLYIADALKEV 151
I+G LL+K +L FF+GE ++G + Y+ +G PT + + +A+ E
Sbjct: 120 IQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEE 179
Query: 152 KC 153
KC
Sbjct: 180 KC 181
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 66 KVVDIVDTFRLQRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDG 125
K +I I+L E ++EI K + KFL++ D + +GES D
Sbjct: 151 KAFEIASNRSFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILGESDPDKA 210
Query: 126 CLVFAYYKE 134
F+ Y E
Sbjct: 211 AKAFSDYAE 219
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 31 VEGKWVVQGAVDVDIGANP 49
V+G+W+ +GA VD+G P
Sbjct: 224 VKGEWIKEGAAVVDVGTTP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,150,544
Number of Sequences: 62578
Number of extensions: 139800
Number of successful extensions: 326
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)