Query 031780
Match_columns 153
No_of_seqs 107 out of 351
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00151 translationally contr 100.0 6.1E-71 1.3E-75 437.7 15.7 149 1-153 1-172 (172)
2 PF00838 TCTP: Translationally 100.0 7.4E-69 1.6E-73 423.8 11.7 147 1-150 1-165 (165)
3 KOG1727 Microtubule-binding pr 100.0 4.3E-61 9.4E-66 377.8 8.6 152 1-153 1-169 (169)
4 PF07523 Big_3: Bacterial Ig-l 55.7 5.1 0.00011 26.4 0.6 27 111-137 4-30 (67)
5 KOG0907 Thioredoxin [Posttrans 41.0 17 0.00038 26.5 1.5 48 102-152 42-89 (106)
6 KOG2582 COP9 signalosome, subu 36.6 43 0.00094 30.5 3.6 61 78-142 303-371 (422)
7 PF09142 TruB_C: tRNA Pseudour 34.9 28 0.00061 22.7 1.6 23 121-143 32-55 (56)
8 cd02957 Phd_like Phosducin (Ph 33.9 29 0.00064 24.5 1.8 40 105-148 48-87 (113)
9 cd06908 M14_AGBL4_like Peptida 32.1 31 0.00066 29.2 1.8 23 111-134 82-104 (261)
10 PTZ00062 glutaredoxin; Provisi 27.8 1.2E+02 0.0025 24.8 4.5 41 100-151 36-76 (204)
11 PRK14659 acpS 4'-phosphopantet 26.9 84 0.0018 23.1 3.2 31 66-96 5-40 (122)
12 PF03992 ABM: Antibiotic biosy 25.1 1.8E+02 0.0039 18.1 5.0 45 88-133 11-58 (78)
13 PHA02278 thioredoxin-like prot 24.3 44 0.00096 23.9 1.3 13 137-149 72-84 (103)
14 COG5608 LEA14-like dessication 23.5 2.2E+02 0.0047 22.9 5.1 63 16-91 62-125 (161)
15 COG3607 Predicted lactoylgluta 22.5 58 0.0013 25.3 1.7 41 88-128 81-122 (133)
16 PF09196 DUF1953: Domain of un 22.3 53 0.0012 22.3 1.2 11 3-13 41-51 (66)
17 cd03856 M14_Nna1_like Peptidas 20.5 73 0.0016 26.8 2.1 23 111-134 92-114 (269)
No 1
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=100.00 E-value=6.1e-71 Score=437.70 Aligned_cols=149 Identities=40% Similarity=0.696 Sum_probs=142.0
Q ss_pred CeEeeecCCCCeeeccCCCce------EeeCCEEEEEEEEEEEeccccccCCCCCCCCCCCCCCCcccceEEEeeEEecc
Q 031780 1 MLVYQDLLTGDELLSDSFPYK------EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTF 74 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~------~v~d~~~yeV~~k~vt~~~~~~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~ 74 (153)
|||||||||||||||||||++ ++ +|++|||+||+|+|+.++ ||+|||||+++ +|++++++++|||||+||
T Consensus 1 MiIykDi~tgDEm~SDsyk~~~~~~~~~~-~~~~yEV~~k~v~~~~~d--ig~n~saee~~-~e~~d~~~~~vvDIV~~f 76 (172)
T PTZ00151 1 MKVYKDVFTGDEVCSDSYKQLDPFGNAEF-SEIAFEVKSKKVIKGNED--YGIADNSEEGD-VEGVDADVETVIDIVDAF 76 (172)
T ss_pred CeEEEecccCCeeeccccccccccccccc-CCEEEEEeeEEEEECCcc--ccCCCCccccc-ccccccccEEEEEeeecC
Confidence 999999999999999999998 55 579999999999998765 69999999753 688999999999999999
Q ss_pred chH--------------HHHHHhcccC---ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCc
Q 031780 75 RLQ--------------RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGAT 137 (153)
Q Consensus 75 rLq--------------~Y~K~ik~kL---~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~ 137 (153)
||| +|||+|++|| +|+||++|+++||++||+||+||+||||||||||||||||||++|||||+
T Consensus 77 rLqet~f~Kk~Y~~yiK~YmK~vk~~L~e~~pe~v~~Fk~~a~~~vK~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~ 156 (172)
T PTZ00151 77 KLQSTPFTKKEYSTYIKKYMQRIKAYLEEKNPDRVEKFKTNAQPFVKHILENFDDFEFYLGESLDCEAGLIYGYYKGEEL 156 (172)
T ss_pred cceecCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCceEeecCCCCCCccEEEEeecCCCc
Confidence 998 9999999999 69999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEccccceeeC
Q 031780 138 DPTFLYIADALKEVKC 153 (153)
Q Consensus 138 tP~~~f~KdGL~eeK~ 153 (153)
||||+||||||+||||
T Consensus 157 tP~~~f~KdGL~eeK~ 172 (172)
T PTZ00151 157 APRFVYIKDGLKEERY 172 (172)
T ss_pred ceEEEEEcccceeecC
Confidence 9999999999999997
No 2
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=100.00 E-value=7.4e-69 Score=423.79 Aligned_cols=147 Identities=44% Similarity=0.755 Sum_probs=134.7
Q ss_pred CeEeeecCCCCeeeccCCCceEeeCCEEEEEEEEEEEec-cccccCCCCCCCCCCCCCCCcccceEEEeeEEeccchH--
Q 031780 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQG-AVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ-- 77 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~~v~d~~~yeV~~k~vt~~-~~~~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq-- 77 (153)
||||||||||||||||+||++++ +|++|||+||+|+++ .++++||||||||+++ |++++++++|||||+|||||
T Consensus 1 MiiykDiisgdEm~SD~y~~~~~-~~~~yeV~gk~vt~~~~d~~liG~N~SaE~~~--e~~~~~~~~viDiV~~~~L~et 77 (165)
T PF00838_consen 1 MIIYKDIISGDEMFSDSYKIELV-DDVFYEVEGKMVTRTGIDDSLIGANPSAEEGE--EGTDDSVETVIDIVDNHRLQET 77 (165)
T ss_dssp EEEEEETTTTTEEEETTSCEEEG-CTTEEEEE--EEEEETTB-TTTSSS--SSSSS--SSSCCCECEEEHHHHHTTEEEE
T ss_pred CeEEeccCCCCEecccCcccccc-CCEEEEEEEEEEeeccccccccccCcccccCc--cCCCCccEEccceeecccceee
Confidence 99999999999999999999665 679999999999995 5577899999999875 88999999999999999998
Q ss_pred ------------HHHHHhcccC---ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEE
Q 031780 78 ------------RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFL 142 (153)
Q Consensus 78 ------------~Y~K~ik~kL---~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~ 142 (153)
+|||+|++|| +|+||++|+++||+++|+||+||||||||+||||||||||||++|||||+||||+
T Consensus 78 ~f~Kk~y~~yiK~Y~K~i~~kL~e~~~erv~~F~~~a~~~vK~il~nfkd~qFf~Gesm~~dgmv~l~~yredg~tP~~~ 157 (165)
T PF00838_consen 78 SFDKKSYKAYIKDYMKKIKEKLEENGPERVKAFKKGAQEFVKKILANFKDYQFFTGESMDPDGMVALLNYREDGVTPYFI 157 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHTGGGCEEEEETTCCTTS-EEEEEEETTSSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHhHHHHHHHHhhccccccccccccCCCCcEEEEEecCCCccEEEE
Confidence 9999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccce
Q 031780 143 YIADALKE 150 (153)
Q Consensus 143 f~KdGL~e 150 (153)
||||||+|
T Consensus 158 f~KdGL~E 165 (165)
T PF00838_consen 158 FFKDGLKE 165 (165)
T ss_dssp EEGGGEEE
T ss_pred EEcccccC
Confidence 99999987
No 3
>KOG1727 consensus Microtubule-binding protein (translationally controlled tumor protein) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=4.3e-61 Score=377.84 Aligned_cols=152 Identities=48% Similarity=0.819 Sum_probs=143.7
Q ss_pred CeEeeecCCCCeeeccCCCceEeeCCEEEEEEEEEEEecccc-ccCCCCCCCCCCCCCCCcccceEEEeeEEeccchH--
Q 031780 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVD-VDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ-- 77 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~~v~d~~~yeV~~k~vt~~~~~-~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq-- 77 (153)
|+||+||||||||+||+||++++++ +||||+||+|||++++ ++||+|||||++.+++++++++++|+|||+|||||
T Consensus 1 mliy~di~t~del~sd~~~~k~i~~-l~~EvegK~vsr~~~D~~lig~NpSaE~~~edegte~~~~~~vdiV~~~rLqEq 79 (169)
T KOG1727|consen 1 MLIYKDIITGDELLSDSYPMKEVDD-LCYEVEGKMVTRTNGDDSLIGANPSAEEGAEDEGTEETVETVVDIVLNFRLQEQ 79 (169)
T ss_pred CceeeccccCchhcccchhHHHHHh-hhheeeceeccccCccchhcccCccccccccCCcchhheeeeeeeeeeeccccc
Confidence 8999999999999999999999976 9999999999998654 56999999999755899999999999999999998
Q ss_pred ------------HHHHHhcccCChHHHHHHHHhhHHHHHHHHc-CCCCcceeecCCCCCCceEEEEeccCCC-cceEEEE
Q 031780 78 ------------RFIKLLTPKLSEERQEIFKKNIEGATKFLLS-KLSDLQFFVGESMHDDGCLVFAYYKEGA-TDPTFLY 143 (153)
Q Consensus 78 ------------~Y~K~ik~kL~perv~~F~~~a~~~vK~il~-nFkd~qFy~Gesmd~dgmv~l~~yredg-~tP~~~f 143 (153)
+|||+|++||.+++++.|++++++++|.++. ||||||||+||||||||||||++||||| +||+|+|
T Consensus 80 ~~~ke~~k~yik~ymK~v~~klee~~~~~f~k~~~~a~q~~h~anFKnyqFFIGEnMnpdgmVal~~YRedg~~~P~~~f 159 (169)
T KOG1727|consen 80 SPFKERFKAYIKGYMKAVKAKLEEEDVDVFKKNIQGAEKIKHIANFKNYQFFIGENMNPDGMVALLDYREDGGVTPYMIF 159 (169)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchHHHHHHhhccccceeeecccCCCCceEEEeeeecCCCcCceEEE
Confidence 8999999999889999999999999997776 9999999999999999999999999966 9999999
Q ss_pred EccccceeeC
Q 031780 144 IADALKEVKC 153 (153)
Q Consensus 144 ~KdGL~eeK~ 153 (153)
|||||++|||
T Consensus 160 fk~gl~~ekc 169 (169)
T KOG1727|consen 160 FKDGLEEEKC 169 (169)
T ss_pred eccCcccccC
Confidence 9999999998
No 4
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=55.72 E-value=5.1 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=17.8
Q ss_pred CCcceeecCCCCCCceEEEEeccCCCc
Q 031780 111 SDLQFFVGESMHDDGCLVFAYYKEGAT 137 (153)
Q Consensus 111 kd~qFy~Gesmd~dgmv~l~~yredg~ 137 (153)
++-.++.||++||.|+++-..|.++..
T Consensus 4 ~kt~y~~Ge~~d~~~~~v~at~~dG~~ 30 (67)
T PF07523_consen 4 KKTTYYVGEKFDPTGLFVTATYSDGTS 30 (67)
T ss_dssp S-EEEETTT---HHCHEEEEEETTS-E
T ss_pred ccCEEECCCCcCccCCEEEEEEcCCCE
Confidence 345689999999999999988875443
No 5
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.03 E-value=17 Score=26.47 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=28.2
Q ss_pred HHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEEEEccccceee
Q 031780 102 ATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 152 (153)
Q Consensus 102 ~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~f~KdGL~eeK 152 (153)
.+.++-.++.+-.|+.= |.|-..-+++=-+--..|+|.|||+|-+..+
T Consensus 42 ~~~~La~~y~~v~Flkv---dvde~~~~~~~~~V~~~PTf~f~k~g~~~~~ 89 (106)
T KOG0907|consen 42 KFEKLAEKYPDVVFLKV---DVDELEEVAKEFNVKAMPTFVFYKGGEEVDE 89 (106)
T ss_pred HHHHHHHHCCCCEEEEE---ecccCHhHHHhcCceEeeEEEEEECCEEEEE
Confidence 44555557788777642 3333111221112346999999999987765
No 6
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.59 E-value=43 Score=30.51 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=46.9
Q ss_pred HHHHHhccc------CChHHHHH--HHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEE
Q 031780 78 RFIKLLTPK------LSEERQEI--FKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFL 142 (153)
Q Consensus 78 ~Y~K~ik~k------L~perv~~--F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~ 142 (153)
=|+|.|+.- |+-+.++. +.+.+|+.-|.|+-.|+|=+.|+--+ |||.+..=.++-..|-|.
T Consensus 303 l~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN----G~v~f~~n~e~~~SpeM~ 371 (422)
T KOG2582|consen 303 LYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN----GMVFFTDNPEKYNSPEMH 371 (422)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec----ceEEEecCcccCCCHHHH
Confidence 455555442 25677777 99999999999999999999998764 999988766776666543
No 7
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=34.92 E-value=28 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=16.8
Q ss_pred CCCCc-eEEEEeccCCCcceEEEE
Q 031780 121 MHDDG-CLVFAYYKEGATDPTFLY 143 (153)
Q Consensus 121 md~dg-mv~l~~yredg~tP~~~f 143 (153)
++||| +|||+.-+.+...|..+|
T Consensus 32 ~~pdG~lvAL~~~~g~~~rp~~Vf 55 (56)
T PF09142_consen 32 FAPDGRLVALLEERGGRARPVVVF 55 (56)
T ss_dssp E-TTS-EEEEEEEETTEEEEEEES
T ss_pred ECCCCcEEEEEEccCCcEeEEEee
Confidence 36887 788887777778888775
No 8
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=33.87 E-value=29 Score=24.54 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEEEEcccc
Q 031780 105 FLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADAL 148 (153)
Q Consensus 105 ~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~f~KdGL 148 (153)
.+...+.+..|+. +|.+-. .+..--.=..+|++++||+|=
T Consensus 48 ~la~~~~~v~f~~---vd~~~~-~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 48 ELAAKYPETKFVK---INAEKA-FLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred HHHHHCCCcEEEE---EEchhh-HHHHhcCCCcCCEEEEEECCE
Confidence 3334456666664 455543 444322234699999999984
No 9
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=32.10 E-value=31 Score=29.24 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.9
Q ss_pred CCcceeecCCCCCCceEEEEeccC
Q 031780 111 SDLQFFVGESMHDDGCLVFAYYKE 134 (153)
Q Consensus 111 kd~qFy~Gesmd~dgmv~l~~yre 134 (153)
+++.||+=+.|||||.+ +.+||-
T Consensus 82 ~~~~~~IvP~~NPDGv~-~gn~R~ 104 (261)
T cd06908 82 EHLVFKIVPMLNPDGVF-LGNYRC 104 (261)
T ss_pred HhCcEEEEeeecCccee-ecCCcC
Confidence 45779999999999977 667775
No 10
>PTZ00062 glutaredoxin; Provisional
Probab=27.82 E-value=1.2e+02 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEEEEcccccee
Q 031780 100 EGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEV 151 (153)
Q Consensus 100 ~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~f~KdGL~ee 151 (153)
...+..|.+.|.+++|+.=+ .| | +--..|+|+||++|-.-.
T Consensus 36 ~~vl~~l~~~~~~~~F~~V~---~d-------~-~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 36 MDVCNALVEDFPSLEFYVVN---LA-------D-ANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred HHHHHHHHHHCCCcEEEEEc---cc-------c-CcccceEEEEEECCEEEe
Confidence 34556666678999998653 34 2 233589999999996543
No 11
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=26.91 E-value=84 Score=23.11 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=21.6
Q ss_pred EEeeEEeccchHH----HHHHhcccC-ChHHHHHHH
Q 031780 66 KVVDIVDTFRLQR----FIKLLTPKL-SEERQEIFK 96 (153)
Q Consensus 66 ~vidiV~~~rLq~----Y~K~ik~kL-~perv~~F~ 96 (153)
-|+|||.--|... |..++.+++ +|++...+.
T Consensus 5 iGiDiv~i~ri~~~~~~~~~~f~~r~ft~~E~~~~~ 40 (122)
T PRK14659 5 IGTDIVYIPRILNLLKKFGNKFLNRVFSEKEIEDSL 40 (122)
T ss_pred EEeeEEEehHHHHHHHHhhHHHHHhcCCHHHHHHHH
Confidence 5899999988873 444454554 787777765
No 12
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=25.14 E-value=1.8e+02 Score=18.15 Aligned_cols=45 Identities=9% Similarity=0.170 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhhHHHHHHHHcCCCC---cceeecCCCCCCceEEEEecc
Q 031780 88 SEERQEIFKKNIEGATKFLLSKLSD---LQFFVGESMHDDGCLVFAYYK 133 (153)
Q Consensus 88 ~perv~~F~~~a~~~vK~il~nFkd---~qFy~Gesmd~dgmv~l~~yr 133 (153)
.|++.+.|...+++....++.+.+. ++++. ...||+-.+.+-.|+
T Consensus 11 ~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~W~ 58 (78)
T PF03992_consen 11 KPGKEEEFLAAFQELAEATLRKEPGCLSYELYR-SLDDPNRYVIVERWE 58 (78)
T ss_dssp ETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEE-ESSSTTEEEEEEEES
T ss_pred CcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEE-ecCCCCEEEEEEEEC
Confidence 6888999999999999988877775 33333 123344444445454
No 13
>PHA02278 thioredoxin-like protein
Probab=24.33 E-value=44 Score=23.93 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=11.0
Q ss_pred cceEEEEEccccc
Q 031780 137 TDPTFLYIADALK 149 (153)
Q Consensus 137 ~tP~~~f~KdGL~ 149 (153)
..|+|++||+|=.
T Consensus 72 ~iPT~i~fk~G~~ 84 (103)
T PHA02278 72 STPVLIGYKDGQL 84 (103)
T ss_pred cccEEEEEECCEE
Confidence 5899999999944
No 14
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=23.45 E-value=2.2e+02 Score=22.88 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=42.8
Q ss_pred cCCCceEeeCCEEEEEEEEEEEeccccccCCCCCCCCCCCCCCCcccceEEEeeEEeccchHHHHHHhcccC-ChHH
Q 031780 16 DSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQRFIKLLTPKL-SEER 91 (153)
Q Consensus 16 D~y~~~~v~d~~~yeV~~k~vt~~~~~~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq~Y~K~ik~kL-~per 91 (153)
+.||+..- |+-|.|.+.-|-.++|.+.=| --....+...+|+.+-.++-..++..+.|| ++||
T Consensus 62 N~fPipVt--gl~y~vymN~Iki~eG~~~k~-----------~~v~p~S~~tvdv~l~~d~~~~ke~w~~hi~ngEr 125 (161)
T COG5608 62 NPFPIPVT--GLQYAVYMNDIKIGEGEILKG-----------TTVPPNSRETVDVPLRLDNSKIKEWWVTHIENGER 125 (161)
T ss_pred CCcceeee--ceEEEEEEcceEeeccccccc-----------eEECCCCeEEEEEEEEEehHHHHHHHHHHhhccCc
Confidence 56777654 699999988776666544211 112334577899988888877777777787 6666
No 15
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=22.54 E-value=58 Score=25.35 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCC-CCCceEE
Q 031780 88 SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESM-HDDGCLV 128 (153)
Q Consensus 88 ~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesm-d~dgmv~ 128 (153)
+.++|+.|.++|.+.=-+...+--+++|+-|-|. ||||.+-
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~w 122 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVW 122 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeE
Confidence 6799999999998887777888889999888776 8999765
No 16
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=22.28 E-value=53 Score=22.32 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=9.5
Q ss_pred EeeecCCCCee
Q 031780 3 VYQDLLTGDEL 13 (153)
Q Consensus 3 iykDiitgDEm 13 (153)
+|.|++||.|+
T Consensus 41 ~ytdv~t~e~i 51 (66)
T PF09196_consen 41 IYTDVITGEEI 51 (66)
T ss_dssp EEEETTTTEEE
T ss_pred EEEeeecChhe
Confidence 79999999875
No 17
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=20.52 E-value=73 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCcceeecCCCCCCceEEEEeccC
Q 031780 111 SDLQFFVGESMHDDGCLVFAYYKE 134 (153)
Q Consensus 111 kd~qFy~Gesmd~dgmv~l~~yre 134 (153)
+++.|++=+.+||||+. ..+||.
T Consensus 92 ~~~~~~ivP~~NPDG~~-~g~~R~ 114 (269)
T cd03856 92 ESFVFKIVPMLNPDGVI-RGNYRC 114 (269)
T ss_pred hcCeEEEEeeeCCcccc-ccCCcC
Confidence 35789999999999986 556775
Done!