Query 031780
Match_columns 153
No_of_seqs 107 out of 351
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:59:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 1.8E-74 6E-79 455.6 12.7 150 1-153 1-168 (168)
2 1yz1_A Translationally control 100.0 2.3E-74 8E-79 457.3 6.7 152 1-153 3-174 (174)
3 1txj_A Translationally control 100.0 4.3E-72 1.5E-76 443.1 8.4 148 1-153 1-171 (171)
4 2kwb_A TCTP, translationally-c 100.0 1.4E-70 4.8E-75 440.0 6.6 152 1-153 1-181 (189)
5 4fqn_A Malcavernin; helical do 69.8 4.9 0.00017 28.7 3.8 25 76-100 18-42 (98)
6 2rbg_A Putative uncharacterize 63.4 8.1 0.00028 28.6 4.0 50 63-131 33-95 (126)
7 2l7y_A Putative endo-beta-N-ac 46.1 16 0.00055 25.8 3.0 23 114-136 18-40 (98)
8 3dml_A Putative uncharacterize 35.7 13 0.00046 26.4 1.3 14 137-150 76-89 (116)
9 3ota_A Holo-[acyl-carrier-prot 31.9 64 0.0022 23.3 4.5 32 66-97 8-44 (129)
10 1g1e_B SIN3A; four-helix bundl 29.4 50 0.0017 22.4 3.3 27 78-104 15-43 (89)
11 2cr7_A Paired amphipathic heli 27.1 48 0.0016 22.1 2.8 25 78-102 15-41 (80)
12 2czy_A Paired amphipathic heli 26.8 49 0.0017 21.8 2.8 25 78-102 9-35 (77)
13 4euy_A Uncharacterized protein 26.6 66 0.0023 20.4 3.5 13 137-149 71-83 (105)
14 3evi_A Phosducin-like protein 25.7 27 0.00092 24.2 1.4 40 105-150 47-86 (118)
15 1e91_A Paired amphipathic heli 25.6 60 0.0021 21.8 3.2 25 78-102 12-38 (85)
16 2qsi_A Putative hydrogenase ex 22.5 31 0.0011 25.3 1.3 15 137-151 89-103 (137)
17 2qgv_A Hydrogenase-1 operon pr 20.5 36 0.0012 25.0 1.3 14 137-150 91-104 (140)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=1.8e-74 Score=455.64 Aligned_cols=150 Identities=38% Similarity=0.690 Sum_probs=146.2
Q ss_pred CeEeeecCCCCeeeccCCCceEeeCCEEEEEEEEEEEe-ccccccCCCCCCCCCCCCCCCcccceEEEeeEEeccchH--
Q 031780 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ-- 77 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~~v~d~~~yeV~~k~vt~-~~~~~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq-- 77 (153)
|||||||||||||||||||++++ +|++|||+||+|+| ++++++||||||||++ +|++++++++|||||+|||||
T Consensus 1 MiiykDiitgDEm~SDsy~~k~v-d~~~yEV~gk~v~~~~~~didiGaN~SaE~~--~eg~d~~~~~vvdiV~~~rLqet 77 (168)
T 1h6q_A 1 MLLYKDVISGDELVSDAYDLKEV-DDIVYEADCQMVTVKQGGDVDIGANPSAEDA--EENAEEGTETVNNLVYSFRLSPT 77 (168)
T ss_dssp CCEEECTTTTSSCEETTTCEEEC-SSSEEEEECCEEEEECCCCSTTSCCCCCCSC--SCSSCCCEEEEEHHHHHTTCEEC
T ss_pred CeEEeecCCCCEEeecCcccEee-CCEEEEEeeEEEEEccCCccccccCcccccc--ccccCCceEEeeeeeEecccccC
Confidence 99999999999999999999999 67999999999999 9999999999999985 589999999999999999998
Q ss_pred ------------HHHHHhcccC---ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEE
Q 031780 78 ------------RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFL 142 (153)
Q Consensus 78 ------------~Y~K~ik~kL---~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~ 142 (153)
+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||+
T Consensus 78 ~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GEsmd~dgmvvl~~Yredg~tP~~~ 157 (168)
T 1h6q_A 78 SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMI 157 (168)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCCEECTTCCTTSCCEEEEECSSSSCEEEE
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEEE
Confidence 8999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccceeeC
Q 031780 143 YIADALKEVKC 153 (153)
Q Consensus 143 f~KdGL~eeK~ 153 (153)
||||||+||||
T Consensus 158 f~K~GL~eeK~ 168 (168)
T 1h6q_A 158 FFKDGLVSEKF 168 (168)
T ss_dssp EESTTCEEECC
T ss_pred EEcccceeecC
Confidence 99999999998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=2.3e-74 Score=457.26 Aligned_cols=152 Identities=37% Similarity=0.675 Sum_probs=125.2
Q ss_pred CeEeeecCCCCeeeccCCCceEeeCCEEEEEEEEEEEecccccc---CCCCCCCCCCCCCCCcccceEEEeeEEeccchH
Q 031780 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ 77 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~~v~d~~~yeV~~k~vt~~~~~~~---iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq 77 (153)
|||||||||||||||||||++++.||++|||+||+|+|++++++ ||||||||+++ +|++++++++|||||+|||||
T Consensus 3 MiiykDiitgDEm~SDsy~~~~~~dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~~-~eg~d~~~~~~vdiV~~~rLq 81 (174)
T 1yz1_A 3 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPE-GEGTESTVITGVDIVMNHHLQ 81 (174)
T ss_dssp CEEEEETTTCCEEEETTSEEEEEGGGTEEEEECCBCCC-----------------------------CCCBHHHHHTTCE
T ss_pred eEEEeecCCCCEEeecCcccEEccCCEEEEEeeEEEEecCCCccccccccCccccccc-ccccCcceEEcceeEeecccc
Confidence 99999999999999999999999888999999999999998886 99999999864 689999999999999999998
Q ss_pred --------------HHHHHhcccC---ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCcceE
Q 031780 78 --------------RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPT 140 (153)
Q Consensus 78 --------------~Y~K~ik~kL---~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~ 140 (153)
+|||+|++|| +||||++|+++||++||+||+||||||||+||||||||||||++|||||+|||
T Consensus 82 et~fdKk~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP~ 161 (174)
T 1yz1_A 82 ETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPY 161 (174)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCEEEEEECTTSSCEE
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCccEEEEEccCCCcCeE
Confidence 8999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccceeeC
Q 031780 141 FLYIADALKEVKC 153 (153)
Q Consensus 141 ~~f~KdGL~eeK~ 153 (153)
|+||||||+||||
T Consensus 162 ~~f~K~GL~eeK~ 174 (174)
T 1yz1_A 162 MIFFKDGLEMEKC 174 (174)
T ss_dssp EEEEGGGEEEEEC
T ss_pred EEEEcccceeecC
Confidence 9999999999998
No 3
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=4.3e-72 Score=443.06 Aligned_cols=148 Identities=34% Similarity=0.648 Sum_probs=129.7
Q ss_pred CeEeeecCCCCeeeccCC----Cce--EeeCCEEEEEEEEEEEeccccccCCCCCCCCCCCCCCCcccceEEEeeEEecc
Q 031780 1 MLVYQDLLTGDELLSDSF----PYK--EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTF 74 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y----~~~--~v~d~~~yeV~~k~vt~~~~~~~iG~N~saE~~~~~e~~~~~~~~vidiV~~~ 74 (153)
|||||||||||||||||| |++ ++ +|++|||+||+|+|++++++||||||||++ +|+++ +++|||||+||
T Consensus 1 MiIykDiitgDEm~SDsy~~~~~~k~~e~-~~~~yEV~gk~v~~~~~~idiGaN~saE~~--~e~~d--~~~vvdIV~~~ 75 (171)
T 1txj_A 1 MKVYKDVFTNDEVCSDSYNQEDPFGIADF-REIAFEVKSNKRIKGNDDYGIADNSEEAVD--GMGAD--VEQVIDIVDSF 75 (171)
T ss_dssp CEEEEETTTCCEEEETTSCCBCGGGCGGG-TTTEEEEECCEEESCC----------------CCCCS--SCEEEHHHHHH
T ss_pred CeEEeecCcCCEEEeccccccCCcccccc-CCEEEEEEeEEEEECCCcccccCCcccccc--ccCcc--eeecceEEEec
Confidence 999999999999999999 999 88 569999999999999999999999999986 47777 89999999999
Q ss_pred chH--------------HHHHHhcccC---ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEEEeccCCCc
Q 031780 75 RLQ--------------RFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGAT 137 (153)
Q Consensus 75 rLq--------------~Y~K~ik~kL---~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~ 137 (153)
||| +|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+
T Consensus 76 rL~et~f~Kk~y~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~ 155 (171)
T 1txj_A 76 QLTSTSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEV 155 (171)
T ss_dssp TCEEECCCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCCEEEECCTTCS
T ss_pred ceeecCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCC
Confidence 998 8999999999 79999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEccccceeeC
Q 031780 138 DPTFLYIADALKEVKC 153 (153)
Q Consensus 138 tP~~~f~KdGL~eeK~ 153 (153)
||||+||||||+||||
T Consensus 156 tP~~~f~K~GL~eeK~ 171 (171)
T 1txj_A 156 TPRFVYISDGLYEEKF 171 (171)
T ss_dssp SCEEEEEGGGEEEEEC
T ss_pred CeEEEEEcccceeecC
Confidence 9999999999999998
No 4
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=1.4e-70 Score=440.04 Aligned_cols=152 Identities=36% Similarity=0.688 Sum_probs=146.0
Q ss_pred CeEeeecCCCCeeeccCCCceEeeCCEEEEEEEEEEEecccccc-CCCCCCCCCCCCCCCcccceEEEeeEEeccchH--
Q 031780 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD-IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQ-- 77 (153)
Q Consensus 1 MiiykDiitgDEm~SD~y~~~~v~d~~~yeV~~k~vt~~~~~~~-iG~N~saE~~~~~e~~~~~~~~vidiV~~~rLq-- 77 (153)
|||||||||||||||||||++++ +|++|||+||+|+|++++++ ||||||||+++++|++++++++|||||+|||||
T Consensus 1 MiIYkDiitgDEmfSDsy~~k~v-d~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqet 79 (189)
T 2kwb_A 1 MLIYKDIFTDDELSSDSFPMKLV-DDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEM 79 (189)
T ss_dssp CEEEEESSCTTTCEEECCCCEEE-TTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEEE
T ss_pred CeEEeecCCCCEEeecCccCEee-CCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceeec
Confidence 99999999999999999999999 57999999999999999998 899999998544789999999999999999998
Q ss_pred --------------HHHHHhcccC---ChHH--HHHHHHhhHHHHHHHHc--CCCCcceeecCCCCC---CceEEEEecc
Q 031780 78 --------------RFIKLLTPKL---SEER--QEIFKKNIEGATKFLLS--KLSDLQFFVGESMHD---DGCLVFAYYK 133 (153)
Q Consensus 78 --------------~Y~K~ik~kL---~per--v~~F~~~a~~~vK~il~--nFkd~qFy~Gesmd~---dgmv~l~~yr 133 (153)
+|||+|++|| +|+| |++|+++||++||+||+ ||||||||+|||||| ||||||++||
T Consensus 80 ~f~~dKk~y~~yiK~YmK~v~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qFf~GESmd~~~~dGmv~l~~Yr 159 (189)
T 2kwb_A 80 NCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYR 159 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEEEEEHHHHHHTSCCCEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccEeccCCCCCCCCCceEEEEEEE
Confidence 8999999999 6777 99999999999999999 999999999999999 9999999999
Q ss_pred C-CC-cceEEEEEccccceeeC
Q 031780 134 E-GA-TDPTFLYIADALKEVKC 153 (153)
Q Consensus 134 e-dg-~tP~~~f~KdGL~eeK~ 153 (153)
| || +||||+||||||+||||
T Consensus 160 e~dg~~tP~~~ffK~GL~eeK~ 181 (189)
T 2kwb_A 160 DVDGTEVPTLMLVKEAIIEEKC 181 (189)
T ss_dssp EETTEEEEEEEEETTTEEEECC
T ss_pred cCCCCcCeEEEEEccCceEEEe
Confidence 9 99 99999999999999997
No 5
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=69.78 E-value=4.9 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.5
Q ss_pred hHHHHHHhcccCChHHHHHHHHhhH
Q 031780 76 LQRFIKLLTPKLSEERQEIFKKNIE 100 (153)
Q Consensus 76 Lq~Y~K~ik~kL~perv~~F~~~a~ 100 (153)
||+||..++.+|+|.++..|-.=.-
T Consensus 18 lqdYM~~L~~~L~~~ElqqFA~Llr 42 (98)
T 4fqn_A 18 LQDYMLTLRTKLSSQEIQQFAALLH 42 (98)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHH
Confidence 6799999999999999999965433
No 6
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=63.40 E-value=8.1 Score=28.56 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=37.9
Q ss_pred ceEEEeeEEeccchHHHHHHhcccC-------------ChHHHHHHHHhhHHHHHHHHcCCCCcceeecCCCCCCceEEE
Q 031780 63 QAVKVVDIVDTFRLQRFIKLLTPKL-------------SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVF 129 (153)
Q Consensus 63 ~~~~vidiV~~~rLq~Y~K~ik~kL-------------~perv~~F~~~a~~~vK~il~nFkd~qFy~Gesmd~dgmv~l 129 (153)
+-..++|++.+-..+.++...++.| +|++|+.+.+++++. ++||++++
T Consensus 33 skKvviNvis~~~y~e~v~~~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~-------------------~~dGl~iY 93 (126)
T 2rbg_A 33 SKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKS-------------------EVDGLLVY 93 (126)
T ss_dssp CSEEEEEEECSSCHHHHHHHTHHHHHHTTTSEEEEEEECGGGHHHHHHHHTTC-------------------CCCEEEEE
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHhccccceEEEEeCHHHHHHHHHHHHHh-------------------CCCceEEE
Confidence 3477899999988887777766653 799999887665421 68999988
Q ss_pred Ee
Q 031780 130 AY 131 (153)
Q Consensus 130 ~~ 131 (153)
|+
T Consensus 94 CD 95 (126)
T 2rbg_A 94 CD 95 (126)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 7
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=46.07 E-value=16 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.6
Q ss_pred ceeecCCCCCCceEEEEeccCCC
Q 031780 114 QFFVGESMHDDGCLVFAYYKEGA 136 (153)
Q Consensus 114 qFy~Gesmd~dgmv~l~~yredg 136 (153)
+++.||++|..|+.+...|.++-
T Consensus 18 ~Y~vGE~LDltGl~v~~~YsDgt 40 (98)
T 2l7y_A 18 DYLVGDSLDLSEGRFAVAYSNDT 40 (98)
T ss_dssp EEETTTCCCCCSCEEEEEETTSC
T ss_pred EEecCCccccCCCEEEEEEcCCC
Confidence 37899999999999999997543
No 8
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=35.70 E-value=13 Score=26.41 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.6
Q ss_pred cceEEEEEccccce
Q 031780 137 TDPTFLYIADALKE 150 (153)
Q Consensus 137 ~tP~~~f~KdGL~e 150 (153)
-||+|+||++|=+.
T Consensus 76 g~PT~i~f~~G~ev 89 (116)
T 3dml_A 76 FTPTFVLMAGDVES 89 (116)
T ss_dssp SSSEEEEEETTEEE
T ss_pred CCCEEEEEECCEEE
Confidence 58999999999543
No 9
>3ota_A Holo-[acyl-carrier-protein] synthase; structural genomics, center for structural genomics of infec diseases, csgid; HET: COA; 1.85A {Vibrio cholerae o1 biovar el tor} PDB: 3qmn_A*
Probab=31.88 E-value=64 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=21.0
Q ss_pred EEeeEEeccchH----HHHHHhcccC-ChHHHHHHHH
Q 031780 66 KVVDIVDTFRLQ----RFIKLLTPKL-SEERQEIFKK 97 (153)
Q Consensus 66 ~vidiV~~~rLq----~Y~K~ik~kL-~perv~~F~~ 97 (153)
-|+|||..-|++ .|-.+..+++ +|.+++.+.+
T Consensus 8 IG~Div~i~Ri~~~l~r~g~~F~~Rift~~E~~~~~~ 44 (129)
T 3ota_A 8 LGTDIAEIERVEKALARSGENFARRILTDSELEQFHA 44 (129)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred EeeEeeEHHHHHHHHHhhCHHHHHHCCCHHHHHHHHh
Confidence 589999999987 3333444444 7766665554
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=29.38 E-value=50 Score=22.45 Aligned_cols=27 Identities=7% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHhcccC--ChHHHHHHHHhhHHHHH
Q 031780 78 RFIKLLTPKL--SEERQEIFKKNIEGATK 104 (153)
Q Consensus 78 ~Y~K~ik~kL--~perv~~F~~~a~~~vK 104 (153)
.|+++||.+. +|+..+.|..-+..+-+
T Consensus 15 ~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 15 NYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 8999999999 78988998876666644
No 11
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=27.08 E-value=48 Score=22.05 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=20.2
Q ss_pred HHHHHhcccC--ChHHHHHHHHhhHHH
Q 031780 78 RFIKLLTPKL--SEERQEIFKKNIEGA 102 (153)
Q Consensus 78 ~Y~K~ik~kL--~perv~~F~~~a~~~ 102 (153)
.|+++||.++ +|+..+.|..-+..+
T Consensus 15 ~yl~~VK~rF~~~p~~Y~~FL~im~~f 41 (80)
T 2cr7_A 15 TYLDQVKIRFGSDPATYNGFLEIMKEF 41 (80)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 8999999999 688888887755543
No 12
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=26.80 E-value=49 Score=21.80 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHhcccC--ChHHHHHHHHhhHHH
Q 031780 78 RFIKLLTPKL--SEERQEIFKKNIEGA 102 (153)
Q Consensus 78 ~Y~K~ik~kL--~perv~~F~~~a~~~ 102 (153)
.|+++||.++ +|+....|..-+..+
T Consensus 9 ~yl~~VK~~F~~~p~~Y~~FL~im~~~ 35 (77)
T 2czy_A 9 TYLDQVKIRFGSDPATYNGFLEIMKEF 35 (77)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 8999999999 688888887655433
No 13
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=26.63 E-value=66 Score=20.42 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.7
Q ss_pred cceEEEEEccccc
Q 031780 137 TDPTFLYIADALK 149 (153)
Q Consensus 137 ~tP~~~f~KdGL~ 149 (153)
.+|++++|++|-.
T Consensus 71 ~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 71 TGPTVLLFYNGKE 83 (105)
T ss_dssp CCCEEEEEETTEE
T ss_pred CCCEEEEEeCCeE
Confidence 5899999999843
No 14
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=25.69 E-value=27 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=22.7
Q ss_pred HHHcCCCCcceeecCCCCCCceEEEEeccCCCcceEEEEEccccce
Q 031780 105 FLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKE 150 (153)
Q Consensus 105 ~il~nFkd~qFy~Gesmd~dgmv~l~~yredg~tP~~~f~KdGL~e 150 (153)
.+...+.+..|+. .|.|-.. -.| .-...|++++||+|-.-
T Consensus 47 ~la~~~~~v~f~k---vd~d~~~--~~~-~v~~~PT~~~fk~G~~v 86 (118)
T 3evi_A 47 LLARKFPETKFVK---AIVNSCI--QHY-HDNCLPTIFVYKNGQIE 86 (118)
T ss_dssp HHHHHCTTSEEEE---EEGGGTS--TTC-CGGGCSEEEEEETTEEE
T ss_pred HHHHHCCCCEEEE---EEhHHhH--HHC-CCCCCCEEEEEECCEEE
Confidence 3334456667763 3444321 122 23468999999999544
No 15
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=25.59 E-value=60 Score=21.80 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.5
Q ss_pred HHHHHhcccC--ChHHHHHHHHhhHHH
Q 031780 78 RFIKLLTPKL--SEERQEIFKKNIEGA 102 (153)
Q Consensus 78 ~Y~K~ik~kL--~perv~~F~~~a~~~ 102 (153)
.|+++||.+. +|+..+.|..-+..+
T Consensus 12 ~yv~kVK~rF~~~p~~Y~~FL~il~~y 38 (85)
T 1e91_A 12 SYVNKIKTRFLDHPEIYRSFLEILHTY 38 (85)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 8999999999 788888887755544
No 16
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.55 E-value=31 Score=25.28 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=12.2
Q ss_pred cceEEEEEcccccee
Q 031780 137 TDPTFLYIADALKEV 151 (153)
Q Consensus 137 ~tP~~~f~KdGL~ee 151 (153)
..|+++|||+|-.-.
T Consensus 89 siPTlilFkdG~~v~ 103 (137)
T 2qsi_A 89 VCPSLAVVQPERTLG 103 (137)
T ss_dssp SSSEEEEEECCEEEE
T ss_pred cCCEEEEEECCEEEE
Confidence 589999999996543
No 17
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=20.51 E-value=36 Score=25.01 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=11.6
Q ss_pred cceEEEEEccccce
Q 031780 137 TDPTFLYIADALKE 150 (153)
Q Consensus 137 ~tP~~~f~KdGL~e 150 (153)
.-|+++|||+|-.-
T Consensus 91 sIPTlilFk~G~~v 104 (140)
T 2qgv_A 91 RFPATLVFTGGNYR 104 (140)
T ss_dssp SSSEEEEEETTEEE
T ss_pred cCCEEEEEECCEEE
Confidence 57999999999554
Done!