BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031781
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 73/94 (77%)
Query: 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRK 106
I++ KGD + +HY GKL DGT FDSS + P F LG+G VIKGWDQGLLGMC GEKRK
Sbjct: 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63
Query: 107 LKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
L IP++LGYG +G+PP IPGGATL+F+ EL+ +
Sbjct: 64 LVIPSELGYGERGAPPKIPGGATLVFEVELLKIE 97
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG GHV
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP EF LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMV 158
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG G V
Sbjct: 7 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 66
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 67 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 22 LVSANKSGDVTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPI 79
LV V + G+KY+ T +A G + VHY G LTDG FDSS +R DP
Sbjct: 14 LVPRGSHMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPF 73
Query: 80 EFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
F LG G VIKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 74 AFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 133
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 158
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 37 GVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQ 94
G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG G VIKGWD+
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDE 164
Query: 95 GLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 165 GVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 60/92 (65%)
Query: 48 QAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKL 107
+ G K+ VHY G+ DG FDSS RG P +F LG+G VIKGWDQG+ M +GEK
Sbjct: 39 KPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALF 98
Query: 108 KIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IP +L YG +G PP IP ATL+F+ EL+ V
Sbjct: 99 TIPYQLAYGERGYPPVIPPKATLVFEVELLAV 130
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 59/87 (67%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD+++VHY G L DG FDSS +R D +F+LG G VIKGWDQG+ M GE IP
Sbjct: 30 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPP 89
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVT 138
+L YG GSPPTIP ATL FD EL++
Sbjct: 90 ELAYGESGSPPTIPANATLQFDVELLS 116
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 48 QAHKGDKIKVHYRGKLTDGTVF-DSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRK 106
+ ++G + V GKL DGTVF + +P EF+ VI+G D+ +L M GE
Sbjct: 259 RPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVAL 318
Query: 107 LKIPAKLGYGAQGSP--PTIPGGATLIFDTELVT 138
+ IP + YG+ S +P +T+I++ ELV+
Sbjct: 319 VTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVS 352
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 53 DKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAK 112
D++ V Y +L DGTV S + +EF + GH+ + + M GEK L + +
Sbjct: 147 DEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQ 202
Query: 113 LGYGAQGSPP-----TIPGGATLIFDTELVT 138
G+G G P +P A+L+ D ELV+
Sbjct: 203 YGFGEMGRPAAGEGGAVPPNASLVIDLELVS 233
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 59/87 (67%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD+++VHY G L DG FDSS +R D +F+LG G VIKGWDQG+ M GE IP
Sbjct: 46 GDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPP 105
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVT 138
+L YG GSPPTIP ATL FD EL++
Sbjct: 106 ELAYGESGSPPTIPANATLQFDVELLS 132
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 48 QAHKGDKIKVHYRGKLTDGTVF-DSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRK 106
+ ++G + V GKL DGTVF + +P EF+ VI+G D+ +L M GE
Sbjct: 275 RPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVAL 334
Query: 107 LKIPAKLGYGAQGSP--PTIPGGATLIFDTELVT 138
+ IP + YG+ S +P +T+I++ ELV+
Sbjct: 335 VTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVS 368
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 53 DKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAK 112
D++ V Y +L DGTV S + +EF + GH+ + + M GEK L + +
Sbjct: 163 DEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQ 218
Query: 113 LGYGAQGSPP-----TIPGGATLIFDTELVT 138
G+G G P +P A+L+ D ELV+
Sbjct: 219 YGFGEMGRPAAGEGGAVPPNASLVIDLELVS 249
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 102 bits (254), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG F SS +R DP F LG G V
Sbjct: 99 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMV 158
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA+G+ IP ATL+F+ EL+ V
Sbjct: 159 IKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 59/90 (65%)
Query: 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRK 106
++ G +KVHY G L +GT FDSS +RGD F LG G+VIKGWD G+ M GE +
Sbjct: 28 VKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE 87
Query: 107 LKIPAKLGYGAQGSPPTIPGGATLIFDTEL 136
I + GYG GSPP IPGGATLIF+ EL
Sbjct: 88 FTIRSDYGYGDAGSPPKIPGGATLIFEVEL 117
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 33 ELQIGVKYKPKTCDIQAHKGDKIKVHYRGKL-TDGTVFDSSFER--GDPIEFELGSGHVI 89
E++I V KP C + GD + VHY G L DG++F S+ + G PI F LG +
Sbjct: 13 EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72
Query: 90 KGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKP 143
KGWDQGL GMCVGEKRKL IP LGYG +G IP +TLIF+ +L+ + P
Sbjct: 73 KGWDQGLKGMCVGEKRKLIIPPALGYGKEGK-GKIPPESTLIFNIDLLEIRNGP 125
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD + +HY G L +G FDSS +RG P + +G G VIKGWD G+ + VGEK +L IP
Sbjct: 25 GDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG 84
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YG +G P IP +TL+FD EL+ VN
Sbjct: 85 PYAYGPRGFPGLIPPNSTLVFDVELLKVN 113
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 31 VTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHV 88
V + G+KY+ T +A G + VHY G LTDG FDSS +R DP F LG G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 89 IKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
IKGWD+G+ GM VG R+L IP +LGYGA G+ IP ATL+F+ EL+ V
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 11/101 (10%)
Query: 48 QAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLG------MCV 101
+A KG IK HY GKL +G VFDSS+ RG P+ F +G G VIKGWDQG+LG M
Sbjct: 26 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT 85
Query: 102 GEKRKLKIPAKLGY-----GAQGSPPTIPGGATLIFDTELV 137
G KR L+IP +L Y G +G IP + L+FD E +
Sbjct: 86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD++ VHY G L DGT FDSS +R D F+LG G VIK WD + M VGE ++
Sbjct: 49 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCKP 108
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GSPP IP ATL+F+ EL G+
Sbjct: 109 EYAYGSAGSPPKIPPNATLVFEVELFEFKGE 139
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 55/91 (60%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD++ VHY G L DGT FDSS +R D F+LG G VIK WD + M VGE +
Sbjct: 50 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKP 109
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GSPP IP ATL+F+ EL G+
Sbjct: 110 EYAYGSAGSPPKIPPNATLVFEVELFEFKGE 140
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 52/84 (61%)
Query: 57 VHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYG 116
VHY G L DG VFDSS RG P F +G G VI+GWD+G+ M VG++ KL YG
Sbjct: 25 VHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCSPDYAYG 84
Query: 117 AQGSPPTIPGGATLIFDTELVTVN 140
++G P IP ATL FD EL+ V
Sbjct: 85 SRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD++ VHY G L DGT FDSS +R D F+LG G VIK WD + M VGE +
Sbjct: 70 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKP 129
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEK 148
+ YG+ GSPP IP ATL+F+ EL G+ + E+
Sbjct: 130 EYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 55/91 (60%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD++ VHY G L DGT FDSS +R D F+LG G VIK WD + M VGE +
Sbjct: 54 GDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKP 113
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GSPP IP ATL+F+ EL G+
Sbjct: 114 EYAYGSAGSPPKIPPNATLVFEVELFEFKGE 144
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 50 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKP 109
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 110 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 140
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 54 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 113
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 114 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 54 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 113
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 114 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 38 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 97
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 98 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 38 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 97
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 98 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 54/91 (59%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GD++ VHY GKL +G FDSS +R +P F +G G VIK WD G+ M GE L
Sbjct: 50 GDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKP 109
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YGA GS P IP ATL F+ EL+ G+
Sbjct: 110 EYAYGATGSLPKIPSNATLFFEVELLDFKGE 140
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
GDK+ VHY+GKL++G FDSS +R +P F LG G VIK WD G+ M GE L
Sbjct: 54 GDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKP 113
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
+ YG+ GS P IP ATL F+ EL+ G+
Sbjct: 114 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 51 KGDKIKVHYRGKL-TDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKI 109
KG+++ VHY GKL + G VFDSS ER P +F LG G VIKGWD + M EK +++
Sbjct: 35 KGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRL 94
Query: 110 PAKLGYGAQGSPPTIPGGATLIFDTELVT 138
+K GYG +G +IPG + LIF+ EL++
Sbjct: 95 DSKYGYGEEGCGESIPGNSVLIFEIELIS 123
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATLIFD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPNATLIFDVELLKLE 107
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 20 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 79
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 80 PDYAYGATGHPGIIPPHATLVFDVELLKLE 109
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW +G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 53/89 (59%)
Query: 52 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111
G VHY G L DG FDSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 19 GQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 112 KLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 79 DYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+GW +G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS ++ P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGVPGIIPPHATLVFDVELLKLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG DSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG DSS +R P +F LG VI+GW++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+G+++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 51 KGDKIKVHYRGKL-TDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKI 109
KG+++ VHY GKL + G VFDSSF+R P +F L G VIKGWD + M EK ++I
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRI 95
Query: 110 PAKLGYGAQGSPPTIPGGATLIFDTELVT 138
+ GYG +G +IPG + L+F+ EL++
Sbjct: 96 ESMYGYGDEGCGESIPGNSVLLFEIELLS 124
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 51 KGDKIKVHYRGKL-TDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKI 109
KG+++ VHY GKL + G VFDSSF+R P +F L G VIKGWD + M EK ++I
Sbjct: 36 KGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRI 95
Query: 110 PAKLGYGAQGSPPTIPGGATLIFDTELVT 138
+ GYG +G +IPG + L+F+ EL++
Sbjct: 96 ESMYGYGDEGCGESIPGNSVLLFEIELLS 124
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
+G VHY G L DG FDSS +R P +F LG VI+G ++G+ M VG++ KL I
Sbjct: 18 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLTIS 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
YGA G P IP ATL+FD EL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
KG VHY G L +G FDSS +R P +F +G VIKG+++G M +G++ KL
Sbjct: 18 KGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCT 77
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTV 139
+ YGA G P IP ATLIFD EL+ +
Sbjct: 78 PDVAYGATGHPGVIPPNATLIFDVELLNL 106
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 53 DKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAK 112
DK +VHY G+L DGTVFDSS ERG P F VIKGW + L M G++ +L IP
Sbjct: 57 DKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYD 114
Query: 113 LGYGAQGSPPTIPGGATLIFDTELVTVN--GKPASGEKTEDEL 153
L YG G IP + L FD EL+++ GK + E+ ++ L
Sbjct: 115 LAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDEIL 157
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFE-------RGDPIEFELGSGHVIKGWDQGLLGMCVGE 103
KGD + Y G L DGTVFD++ + P+ F++G G VI+GWD+ LL M GE
Sbjct: 19 KGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 78
Query: 104 KRKLKIPAKLGYGAQGSP-PTIPGGATLIFDTELVTVN 140
K +L+I + YG +G P IP A L F+ ELV ++
Sbjct: 79 KARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFE-------RGDPIEFELGSGHVIKGWDQGLLGMCVGE 103
KGD + Y G L DGTVFD++ + P+ F++G G VI+GWD+ LL M GE
Sbjct: 22 KGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81
Query: 104 KRKLKIPAKLGYGAQGSPPT-IPGGATLIFDTELVTVN 140
K +L+I + YG +G P IP LIF+ ELV ++
Sbjct: 82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID 119
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 53 DKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAK 112
D + V+Y+G L DG FD+S+ RG+P+ F L VI GW +GL + G K KL IP +
Sbjct: 140 DTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPE 197
Query: 113 LGYGAQGSPPTIPGGATLIFDTELVTVNGKPASGEKTE 150
L YG G P IP +TL+FD EL+ V P + K E
Sbjct: 198 LAYGKAGV-PGIPPNSTLVFDVELLDVKPAPKADAKPE 234
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 53 DKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAK 112
D + V+Y+G L DG FD+S+ RG+P+ F L VI GW +GL + G K KL IP +
Sbjct: 140 DTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPE 197
Query: 113 LGYGAQGSPPTIPGGATLIFDTELVTV 139
L YG G P IP +TL+FD EL+ V
Sbjct: 198 LAYGKAGV-PGIPPNSTLVFDVELLDV 223
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 26 NKSGDVTELQIGVKYKPKTCD--IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFEL 83
NK G V L G++YK ++ K D + V Y G+L DGTVFDS+ + G P F++
Sbjct: 21 NKPG-VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV 79
Query: 84 GSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
VI GW + L M G ++ +P+ L YG + I TLIF L++V
Sbjct: 80 --SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 133
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 26 NKSGDVTELQIGVKYKPKTCD--IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFEL 83
NK G V L G++YK ++ K D + V Y G+L DGTVFDS+ + G P F++
Sbjct: 97 NKPG-VVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV 155
Query: 84 GSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 139
VI GW + L M G ++ +P+ L YG + I TLIF L++V
Sbjct: 156 --SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 209
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 13/83 (15%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFER-------------GDPIEFELGSGHVIKGWDQGLL 97
KG KIKV Y GKL G VFD+S E +P+EF +G G +I+G+++ +L
Sbjct: 4 KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 98 GMCVGEKRKLKIPAKLGYGAQGS 120
M VG+++ +KIPA+ YG +
Sbjct: 64 DMEVGDEKTVKIPAEKAYGNRNE 86
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 31 VTELQIGVKYKPKTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIK 90
+TEL G KP +++V Y G+L DG +FD S + P F L S VI
Sbjct: 121 MTELTPGTGPKPDA-------NGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VIS 168
Query: 91 GWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140
GW L M G K +L IP+ YGA+G+ I L+F+ EL+ V+
Sbjct: 169 GWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 55 IKVHYRGKLTD-GTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKL 113
+ V Y G L FDS++ R P +LG + G + GLL M GE +
Sbjct: 47 VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 114 GYGAQGSPPTIPGGATLIFDTELV 137
YG G PP IP T++F+ EL+
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELL 130
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 55 IKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLG 114
+ VH+ KL DGT +S+ G P F LG + +G +Q LLG+ VG+K +
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAA 90
Query: 115 YG 116
+G
Sbjct: 91 FG 92
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
KG + VH + L +GT E + F LG VI+ D + M VGE +
Sbjct: 30 KGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 85
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVTVNGKP 143
+K YG QG P IP A L + L T P
Sbjct: 86 SKYCYGPQGRSPYIPPHAALCLEVTLKTAVDGP 118
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
KG + VH + L +GT E + F LG VI+ D + M VGE +
Sbjct: 32 KGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 87
Query: 111 AKLGYGAQGSPPTIPGGATLIFDTELVT 138
+K YG QG P IP A L + L T
Sbjct: 88 SKYCYGPQGRSPYIPPHAALCLEVTLKT 115
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 49 AHKGDKIKVHYRGKLTDGTVFDSSFER-------------GDPIEFELGSGHVIKGWDQG 95
KG +K+ Y G DG +FD++ E P+ G G V+ G D+
Sbjct: 2 VEKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEA 60
Query: 96 LLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASG 146
+L M VGE+R++ +P + +G + P LI +E KP G
Sbjct: 61 ILEMDVGEEREVVLPPEKAFGKRD-----PSKIKLIPLSEFTKRGIKPIKG 106
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
KG + VH + L +GT E + F LG VI+ D + M VGE +
Sbjct: 36 KGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 91
Query: 111 AKLGYGAQGS-PPTIPGGATLIFDTELVTVNGKP 143
+K YG QGS P IP A L + L T +P
Sbjct: 92 SKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP 125
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 48 QAHKGDKIKVHYRGKLTDGTVFDSSFER-------------GDPIEFELGSGHVIKGWDQ 94
KG +K+ Y G DG +FD++ E P+ G G V+ G D+
Sbjct: 1 MVEKGKMVKISYDG-YVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDE 59
Query: 95 GLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPASG 146
+L M VGE+R++ +P + +G + P LI +E KP G
Sbjct: 60 AILEMDVGEEREVVLPPEKAFGKRD-----PSKIKLIPLSEFTKRGIKPIKG 106
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 51 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIP 110
KG + VH + L +GT E + F LG VI+ D + M VGE +
Sbjct: 62 KGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 117
Query: 111 AKLGYGAQGS-PPTIPGGATLIFDTELVT 138
+K YG QGS P IP A L + L T
Sbjct: 118 SKYCYGPQGSRSPYIPPHAALCLEVTLKT 146
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 52 GDKIKVHYRGKLTD--GTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGE 103
G K HYR +D GTV D S RG P+E +G + W+ + M GE
Sbjct: 30 GTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGE 83
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 68 VFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGS 120
V DS+ + +P+EF +G+ +I G ++ +L +GE ++ I + YG S
Sbjct: 27 VLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES 78
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 55 IKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLG 114
+ + Y+ + DG + D S P+++ G G +I G + L G VG+K + + A
Sbjct: 9 VSLAYQVRTEDGVLVDESPVSA-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 115 YG 116
YG
Sbjct: 68 YG 69
>pdb|2KFW|A Chain A, Solution Structure Of Full-Length Slyd From E.Coli
Length = 196
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 55 IKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLG 114
+ + Y+ + DG + D S P+++ G G +I G + L G VG+K + + A
Sbjct: 9 VSLAYQVRTEDGVLVDESPVSA-PLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDA 67
Query: 115 YG 116
YG
Sbjct: 68 YG 69
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 80 EFELGSGHVIKGWDQGLLGMCVGEKRKLKI 109
E +GS IKG++ GL+ M V +K+ L +
Sbjct: 58 ELTIGSNSFIKGFETGLIAMKVNQKKTLAL 87
>pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic
Switching Between Two Dna Bound States
Length = 579
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 105 RKLK--IPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGK 142
R LK +P K+ + P PGG ++I D+E++ ++ K
Sbjct: 274 RSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNK 313
>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 203
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 35 QIGVKYKPKTCDIQAHKGDKIKVHYRGK 62
++G KY+ T ++ + +K K+HYR K
Sbjct: 144 EVGWKYQAVTATLEEKRKEKAKIHYRKK 171
>pdb|2IF6|A Chain A, Crystal Structure Of Metalloprotein Yiix From Escherichia
Coli O157:h7, Duf1105
pdb|2IF6|B Chain B, Crystal Structure Of Metalloprotein Yiix From Escherichia
Coli O157:h7, Duf1105
Length = 186
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 22 LVSANKSGDVTELQIGVKYKP-KTCDIQAHKGDKI--------KVHYRGKLTD------G 66
LV NK V E VKY P K KG + V + KL G
Sbjct: 37 LVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLG 96
Query: 67 TVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLK 108
+D SF D ++ V+ Q LGM VGE++KLK
Sbjct: 97 KPYDFSFSWSDDRQY---CSEVVWKVYQNALGMRVGEQQKLK 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,892,828
Number of Sequences: 62578
Number of extensions: 213758
Number of successful extensions: 350
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 82
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)