Query 031781
Match_columns 153
No_of_seqs 142 out of 1091
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 1.1E-31 2.3E-36 195.0 12.7 119 20-140 85-205 (205)
2 KOG0549 FKBP-type peptidyl-pro 100.0 4.4E-29 9.4E-34 178.0 12.6 117 28-144 64-180 (188)
3 PRK11570 peptidyl-prolyl cis-t 100.0 1.2E-28 2.7E-33 182.8 14.9 121 18-140 84-206 (206)
4 KOG0544 FKBP-type peptidyl-pro 100.0 1.5E-27 3.2E-32 152.6 11.2 98 43-140 11-108 (108)
5 PRK10902 FKBP-type peptidyl-pr 99.9 4.6E-26 1E-30 174.8 15.2 123 18-143 128-252 (269)
6 TIGR03516 ppisom_GldI peptidyl 99.9 6E-26 1.3E-30 164.8 14.5 112 29-141 62-177 (177)
7 PF00254 FKBP_C: FKBP-type pep 99.9 2E-23 4.3E-28 137.0 11.7 92 46-137 2-94 (94)
8 KOG0552 FKBP-type peptidyl-pro 99.9 1.6E-23 3.5E-28 155.4 11.4 107 32-140 116-226 (226)
9 PRK15095 FKBP-type peptidyl-pr 99.8 2.6E-19 5.7E-24 127.7 10.6 73 47-119 3-75 (156)
10 COG1047 SlpA FKBP-type peptidy 99.8 1.4E-17 3.1E-22 119.2 11.0 98 47-144 1-145 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.7 2.6E-17 5.5E-22 120.9 10.7 97 47-144 1-144 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.7 3.8E-16 8.3E-21 123.9 12.8 102 47-152 99-203 (397)
13 TIGR00115 tig trigger factor. 99.4 3.9E-12 8.4E-17 103.5 11.6 94 47-148 145-238 (408)
14 PRK01490 tig trigger factor; P 99.4 8.5E-12 1.8E-16 102.3 11.5 94 47-148 156-249 (435)
15 COG0544 Tig FKBP-type peptidyl 99.3 7.4E-12 1.6E-16 102.4 10.4 94 49-150 158-251 (441)
16 KOG0543 FKBP-type peptidyl-pro 99.1 1.1E-10 2.5E-15 93.0 6.4 81 42-137 2-82 (397)
17 KOG0545 Aryl-hydrocarbon recep 98.4 4.6E-08 1E-12 74.1 0.5 105 48-152 26-173 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.2 0.0003 6.4E-09 51.0 3.0 55 82-140 2-56 (188)
19 PF01346 FKBP_N: Domain amino 92.0 0.11 2.4E-06 35.2 2.0 29 14-42 96-124 (124)
20 PF10518 TAT_signal: TAT (twin 79.9 2.5 5.4E-05 20.7 2.4 20 1-20 2-21 (26)
21 PRK05892 nucleoside diphosphat 78.2 15 0.00033 26.2 6.9 24 88-111 121-144 (158)
22 PRK02710 plastocyanin; Provisi 75.8 10 0.00022 25.5 5.2 54 1-57 1-59 (119)
23 TIGR01461 greB transcription e 65.0 15 0.00031 26.2 4.3 24 88-111 119-142 (156)
24 PRK00226 greA transcription el 64.5 18 0.00038 25.6 4.7 25 87-111 121-145 (157)
25 PHA02122 hypothetical protein 64.1 13 0.00028 21.8 3.2 21 50-71 39-59 (65)
26 PF08802 CytB6-F_Fe-S: Cytochr 63.7 8.8 0.00019 20.8 2.3 9 1-9 6-14 (39)
27 PRK05753 nucleoside diphosphat 62.5 19 0.00041 25.0 4.4 25 87-111 90-114 (137)
28 TIGR01462 greA transcription e 59.7 31 0.00067 24.2 5.2 25 87-111 116-140 (151)
29 PRK01885 greB transcription el 58.1 20 0.00044 25.5 4.0 24 88-111 121-144 (157)
30 PF07076 DUF1344: Protein of u 57.3 26 0.00057 20.9 3.8 35 29-63 16-52 (61)
31 PRK13884 conjugal transfer pep 57.1 35 0.00075 24.8 5.2 26 30-58 35-60 (178)
32 PF01272 GreA_GreB: Transcript 57.0 12 0.00026 23.0 2.4 24 88-111 42-65 (77)
33 PRK13838 conjugal transfer pil 56.2 31 0.00067 25.0 4.8 27 31-58 34-60 (176)
34 TIGR01409 TAT_signal_seq Tat ( 56.1 14 0.0003 18.4 2.1 17 1-17 1-17 (29)
35 PF05984 Cytomega_UL20A: Cytom 54.6 15 0.00032 23.5 2.5 25 1-25 1-25 (100)
36 cd01090 Creatinase Creatine am 51.2 63 0.0014 24.1 6.0 54 45-105 73-135 (228)
37 PF07172 GRP: Glycine rich pro 50.5 21 0.00046 23.2 2.9 18 4-21 4-21 (95)
38 COG0024 Map Methionine aminope 49.0 84 0.0018 24.3 6.4 54 45-105 83-146 (255)
39 PF09122 DUF1930: Domain of un 48.1 30 0.00064 20.8 2.9 22 90-111 35-56 (68)
40 PF05753 TRAP_beta: Translocon 48.0 96 0.0021 22.6 6.3 20 45-64 30-49 (181)
41 cd01089 PA2G4-like Related to 44.2 1.1E+02 0.0025 22.6 6.4 54 45-105 79-146 (228)
42 cd01088 MetAP2 Methionine Amin 42.9 82 0.0018 24.5 5.7 54 45-105 67-126 (291)
43 TIGR00501 met_pdase_II methion 41.8 94 0.002 24.3 5.9 52 46-104 72-129 (295)
44 PF05688 DUF824: Salmonella re 39.9 70 0.0015 18.0 3.8 36 46-86 6-41 (47)
45 PRK08671 methionine aminopepti 38.2 1.1E+02 0.0024 23.8 5.7 52 46-104 69-126 (291)
46 COG0782 Uncharacterized conser 38.1 1E+02 0.0022 21.7 5.0 24 87-110 114-137 (151)
47 PRK12897 methionine aminopepti 37.9 1.6E+02 0.0035 22.1 6.5 54 45-105 81-143 (248)
48 PTZ00053 methionine aminopepti 37.1 81 0.0018 26.7 5.0 52 46-104 231-288 (470)
49 PF12988 DUF3872: Domain of un 37.0 63 0.0014 22.5 3.6 53 10-63 6-58 (137)
50 PRK06342 transcription elongat 36.3 77 0.0017 22.6 4.2 20 88-107 130-149 (160)
51 TIGR00495 crvDNA_42K 42K curve 35.1 1.5E+02 0.0032 24.4 6.2 54 46-106 98-165 (389)
52 COG3040 Blc Bacterial lipocali 32.8 1.3E+02 0.0029 21.8 4.9 37 34-70 35-72 (174)
53 PRK14048 ferrichrome/ferrioxam 32.8 85 0.0019 25.1 4.5 42 1-42 3-44 (374)
54 TIGR00500 met_pdase_I methioni 32.6 2.1E+02 0.0045 21.3 6.4 53 45-104 80-141 (247)
55 PF13956 Ibs_toxin: Toxin Ibs, 32.4 11 0.00025 16.8 -0.4 15 7-21 2-16 (19)
56 PRK00809 hypothetical protein; 31.7 69 0.0015 22.4 3.3 25 88-112 24-48 (144)
57 PF13473 Cupredoxin_1: Cupredo 30.7 50 0.0011 21.2 2.3 47 46-111 36-82 (104)
58 PLN03158 methionine aminopepti 30.1 2.3E+02 0.0049 23.4 6.5 53 45-104 214-275 (396)
59 PRK12896 methionine aminopepti 29.7 2.4E+02 0.0052 21.0 6.2 53 45-104 87-148 (255)
60 cd01086 MetAP1 Methionine Amin 29.6 2.3E+02 0.005 20.9 6.3 53 45-104 72-133 (238)
61 KOG1816 Ubiquitin fusion-degra 28.7 3E+02 0.0065 21.9 8.4 94 27-144 65-173 (308)
62 PRK12318 methionine aminopepti 27.1 2.7E+02 0.0059 21.7 6.3 53 45-104 122-183 (291)
63 COG4922 Uncharacterized protei 26.7 1.9E+02 0.004 19.8 4.4 18 47-64 69-86 (129)
64 PF09465 LBR_tudor: Lamin-B re 26.6 1E+02 0.0022 18.0 2.8 18 126-143 17-34 (55)
65 TIGR02771 TraF_Ti conjugative 25.3 1.1E+02 0.0025 21.9 3.6 29 30-60 30-58 (171)
66 TIGR02925 cis_trans_EpsD pepti 25.0 69 0.0015 23.7 2.5 28 85-114 189-216 (232)
67 PRK12450 foldase protein PrsA; 24.8 95 0.0021 24.5 3.3 28 81-108 195-222 (309)
68 COG0425 SirA Predicted redox p 24.8 1E+02 0.0022 19.1 2.8 25 91-115 21-45 (78)
69 PRK05716 methionine aminopepti 24.3 3E+02 0.0066 20.4 6.3 53 45-104 82-143 (252)
70 TIGR02993 ectoine_eutD ectoine 23.8 2.2E+02 0.0047 23.1 5.4 54 45-105 234-296 (391)
71 PF00639 Rotamase: PPIC-type P 23.5 1.2E+02 0.0026 19.0 3.1 26 83-108 57-82 (95)
72 COG2914 Uncharacterized protei 22.2 1.6E+02 0.0036 19.2 3.4 34 24-57 40-73 (99)
73 PRK13254 cytochrome c-type bio 21.4 2.4E+02 0.0052 19.9 4.5 18 5-22 8-25 (148)
74 TIGR02811 formate_TAT formate 21.4 1.4E+02 0.0031 17.9 2.9 9 1-9 9-17 (66)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=195.03 Aligned_cols=119 Identities=50% Similarity=0.874 Sum_probs=112.2
Q ss_pred hhhHHhccCCCceeeecceEEee--CCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHc
Q 031781 20 STLVSANKSGDVTELQIGVKYKP--KTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLL 97 (153)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~ 97 (153)
.+++.+++.+.+.++++|++|++ .+.|..++.+|.|++||++++.||++||+++.+++|+.|.++ .+|+||.++|.
T Consensus 85 ~f~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~ 162 (205)
T COG0545 85 AFLEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQ 162 (205)
T ss_pred HHHhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHh
Confidence 46678888999999999999987 567899999999999999999999999999999999999999 99999999999
Q ss_pred CCCCCcEEEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 031781 98 GMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140 (153)
Q Consensus 98 ~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~ 140 (153)
+|++|++++++|||++|||..+.++.||||++|+|+|+|++|.
T Consensus 163 ~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 163 GMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred hCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 9999999999999999999999876799999999999999874
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.4e-29 Score=178.00 Aligned_cols=117 Identities=62% Similarity=1.106 Sum_probs=110.6
Q ss_pred CCCceeeecceEEeeCCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEE
Q 031781 28 SGDVTELQIGVKYKPKTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKL 107 (153)
Q Consensus 28 ~~~~~~~~~g~~~~~~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~ 107 (153)
..+...++.++.+++..|..+.+.||.+.+||++.+.||+.|||||..++|++|.+|.+++++||+.+|.+|++||++++
T Consensus 64 ~~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 64 WNPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred cCCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 45668899999999877999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCCC
Q 031781 108 KIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPA 144 (153)
Q Consensus 108 ~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~~~~~ 144 (153)
.|||+++||++|.++.||+++.|+|+|+++++.....
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCCC
Confidence 9999999999999888999999999999999987543
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.96 E-value=1.2e-28 Score=182.78 Aligned_cols=121 Identities=39% Similarity=0.665 Sum_probs=113.2
Q ss_pred HHhhhHHhccCCCceeeecceEEee--CCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHH
Q 031781 18 VLSTLVSANKSGDVTELQIGVKYKP--KTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQG 95 (153)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~a 95 (153)
-..|+++|++++.++++++|++|++ .+.|..|+.||.|.+||++++.||++|++++.+++|..|.++ .+++||+++
T Consensus 84 ~~~fl~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~ea 161 (206)
T PRK11570 84 GVKFLEENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEA 161 (206)
T ss_pred HHHHHHHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHH
Confidence 4568889999999999999999987 556788999999999999999999999999988899999997 799999999
Q ss_pred HcCCCCCcEEEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 031781 96 LLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140 (153)
Q Consensus 96 l~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~ 140 (153)
|.+|++|+++.+.||++++||+.+.++.|||+++|+|+|+|++|.
T Consensus 162 L~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 162 LTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred HcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 999999999999999999999999887899999999999999983
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=152.63 Aligned_cols=98 Identities=50% Similarity=0.896 Sum_probs=93.0
Q ss_pred CCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCC
Q 031781 43 KTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPP 122 (153)
Q Consensus 43 ~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~ 122 (153)
+.+...++.||.|++||++.+.||+.|+|+.+++.|+.|.+|.+++++||++++..|.+|+++++.|+|+++||..|.+.
T Consensus 11 Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~ 90 (108)
T KOG0544|consen 11 GDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG 90 (108)
T ss_pred CCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeeccccccCCCCCCC
Confidence 33447899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCeEEEEEEEEeec
Q 031781 123 TIPGGATLIFDTELVTVN 140 (153)
Q Consensus 123 ~ip~~~~l~~~v~l~~i~ 140 (153)
.||||++|+|+|||+++.
T Consensus 91 ~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 91 GIPPNATLVFDVELLKVN 108 (108)
T ss_pred ccCCCcEEEEEEEEEecC
Confidence 999999999999999873
No 5
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.94 E-value=4.6e-26 Score=174.78 Aligned_cols=123 Identities=38% Similarity=0.666 Sum_probs=113.5
Q ss_pred HHhhhHHhccCCCceeeecceEEee--CCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHH
Q 031781 18 VLSTLVSANKSGDVTELQIGVKYKP--KTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQG 95 (153)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~a 95 (153)
--.|++++++++.+.++++|++|++ .+.|..|+.||.|.+||++++.||++|++++.++.|+.|.++ .+++||+++
T Consensus 128 ~~~fl~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~Ea 205 (269)
T PRK10902 128 GKKYREKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEG 205 (269)
T ss_pred HHHHHHHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHH
Confidence 4568889999999999999999987 556788999999999999998899999999988889999987 799999999
Q ss_pred HcCCCCCcEEEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCC
Q 031781 96 LLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKP 143 (153)
Q Consensus 96 l~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~~~~ 143 (153)
|.+|++|+++.++||++++||..+.+ .||||++|+|+|+|++|++..
T Consensus 206 L~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~~ 252 (269)
T PRK10902 206 LKNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPAP 252 (269)
T ss_pred HhcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccCc
Confidence 99999999999999999999999875 799999999999999997644
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.94 E-value=6e-26 Score=164.82 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=102.3
Q ss_pred CCceeeecceEEeeC----CCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcE
Q 031781 29 GDVTELQIGVKYKPK----TCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 29 ~~~~~~~~g~~~~~~----~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~ 104 (153)
..+.++.+|++|... +.+..|+.||.|++||++++.||+++++++.. .|..|.+|.+++++||+++|.+|++|++
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 457899999999752 45678999999999999999999999999864 5999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeecC
Q 031781 105 RKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNG 141 (153)
Q Consensus 105 ~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~~ 141 (153)
++|.+||++|||..+.++.||||++|+|+|+|++|++
T Consensus 141 ~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 141 ATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred EEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 9999999999999988778999999999999999863
No 7
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.91 E-value=2e-23 Score=137.00 Aligned_cols=92 Identities=49% Similarity=0.978 Sum_probs=86.5
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCC-CCC
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSP-PTI 124 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~-~~i 124 (153)
.++++.||.|++||++++.+|+.+++++..+.|++|.+|.+.+++||+++|.+|++|+++++.||++++||..+.. ..|
T Consensus 2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 4679999999999999998999999998888899999999999999999999999999999999999999998874 359
Q ss_pred CCCCeEEEEEEEE
Q 031781 125 PGGATLIFDTELV 137 (153)
Q Consensus 125 p~~~~l~~~v~l~ 137 (153)
|++++|+|+|+|+
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999986
No 8
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-23 Score=155.43 Aligned_cols=107 Identities=50% Similarity=0.938 Sum_probs=99.3
Q ss_pred eeeecceEEee--CCCccccCCCCEEEEEEEEEeC-CCCEEecccCCCccEE-EEeCCCchhHHHHHHHcCCCCCcEEEE
Q 031781 32 TELQIGVKYKP--KTCDIQAHKGDKIKVHYRGKLT-DGTVFDSSFERGDPIE-FELGSGHVIKGWDQGLLGMCVGEKRKL 107 (153)
Q Consensus 32 ~~~~~g~~~~~--~~~~~~~~~gd~V~v~y~~~~~-dg~~~~st~~~~~~~~-~~lg~~~~~~g~~~al~~mk~G~~~~~ 107 (153)
.++..|+.|.. .+.|..+..|+.|.+||.+++. +|.+|++++. +.|+. |.+|.+.+++||+.++.||++|+++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 58999999976 5668999999999999999999 9999999875 45888 999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 031781 108 KIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140 (153)
Q Consensus 108 ~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~ 140 (153)
+|||+++||..+.+ .||||++|+|+|+|+.|+
T Consensus 195 iIPp~lgYg~~g~~-~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP-EIPPNSTLVFDVELLSVK 226 (226)
T ss_pred EeCccccccccCcC-cCCCCCcEEEEEEEEecC
Confidence 99999999999987 999999999999999874
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.81 E-value=2.6e-19 Score=127.70 Aligned_cols=73 Identities=30% Similarity=0.596 Sum_probs=69.2
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCC
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQG 119 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g 119 (153)
++++.|+.|.+||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|+++.+.|||+.+||..+
T Consensus 3 m~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred cccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 5789999999999999999999999987778999999999999999999999999999999999999999764
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-17 Score=119.18 Aligned_cols=98 Identities=36% Similarity=0.632 Sum_probs=85.9
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCC----
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPP---- 122 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~---- 122 (153)
++++.||.|.+||+++..||+++++|.....|+.|.+|.+++++|+++||.+|.+|++.++.|||+.|||.+....
T Consensus 1 m~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~v 80 (174)
T COG1047 1 MKIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLVQRV 80 (174)
T ss_pred CcccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHeEEe
Confidence 4688999999999999999999999977677999999999999999999999999999999999999999765310
Q ss_pred ------C------------------CC-------------------CCCeEEEEEEEEeecCCCC
Q 031781 123 ------T------------------IP-------------------GGATLIFDTELVTVNGKPA 144 (153)
Q Consensus 123 ------~------------------ip-------------------~~~~l~~~v~l~~i~~~~~ 144 (153)
. +| +|++|.|+++|+++++...
T Consensus 81 p~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~a~~ 145 (174)
T COG1047 81 PRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVREATE 145 (174)
T ss_pred cHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEecChH
Confidence 0 11 5999999999999987654
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.74 E-value=2.6e-17 Score=120.86 Aligned_cols=97 Identities=26% Similarity=0.475 Sum_probs=84.5
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCC--CC
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPP--TI 124 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~--~i 124 (153)
++++.++.|+++|+.++.+|+++++|+. ..|+.|.+|.++++|+|+++|.+|++|++..+.|||+.|||..+... .+
T Consensus 1 MkI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~lV~~v 79 (196)
T PRK10737 1 MKVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQRV 79 (196)
T ss_pred CccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHHEEEe
Confidence 4688999999999999999999999965 57999999999999999999999999999999999999999765310 01
Q ss_pred C---------------------------------------------CCCeEEEEEEEEeecCCCC
Q 031781 125 P---------------------------------------------GGATLIFDTELVTVNGKPA 144 (153)
Q Consensus 125 p---------------------------------------------~~~~l~~~v~l~~i~~~~~ 144 (153)
| +|.+|.|+|+|++++++.+
T Consensus 80 pr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~at~ 144 (196)
T PRK10737 80 PKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATE 144 (196)
T ss_pred cHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEeccCCH
Confidence 1 5899999999999986654
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-16 Score=123.88 Aligned_cols=102 Identities=38% Similarity=0.573 Sum_probs=89.1
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCC-CchhHHHHHHHcCCCCCcEEEEEeeCCCCCC-CCCCCCCC
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGS-GHVIKGWDQGLLGMCVGEKRKLKIPAKLGYG-AQGSPPTI 124 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~-~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg-~~g~~~~i 124 (153)
..|..|..|.+||.+++.++ +|+++. ..+.|..|+ ..++.|++.||..|++|+.+.|+|+|.++|| ..+.++.|
T Consensus 99 ~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~I 174 (397)
T KOG0543|consen 99 SRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLI 174 (397)
T ss_pred CCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCC
Confidence 67999999999999999666 676652 247777887 4799999999999999999999999999999 45567789
Q ss_pred CCCCeEEEEEEEEeec-CCCCCCCCCcCC
Q 031781 125 PGGATLIFDTELVTVN-GKPASGEKTEDE 152 (153)
Q Consensus 125 p~~~~l~~~v~l~~i~-~~~~~~~~~~~~ 152 (153)
|||++|.|+|+|+++. +..+.|.|..+|
T Consensus 175 PPnA~l~yEVeL~~f~~~~~~s~~~~~~e 203 (397)
T KOG0543|consen 175 PPNATLLYEVELLDFELKEDESWKMFAEE 203 (397)
T ss_pred CCCceEEEEEEEEeeecCcccccccchHH
Confidence 9999999999999999 889999988753
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.40 E-value=3.9e-12 Score=103.47 Aligned_cols=94 Identities=29% Similarity=0.554 Sum_probs=82.4
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCCCCCC
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPG 126 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~ 126 (153)
++++.||.|+++|+++. +|+.++++. ..+..|.+|.+.+++||+++|.||++|+++.+.++++.+|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 46889999999999987 898888763 468999999999999999999999999999999999988987655 4
Q ss_pred CCeEEEEEEEEeecCCCCCCCC
Q 031781 127 GATLIFDTELVTVNGKPASGEK 148 (153)
Q Consensus 127 ~~~l~~~v~l~~i~~~~~~~~~ 148 (153)
|.++.|+|+|.+|+....+...
T Consensus 217 gk~~~f~v~i~~I~~~~~peld 238 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELD 238 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCC
Confidence 7899999999999988877533
No 14
>PRK01490 tig trigger factor; Provisional
Probab=99.36 E-value=8.5e-12 Score=102.27 Aligned_cols=94 Identities=27% Similarity=0.529 Sum_probs=82.2
Q ss_pred cccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCCCCCC
Q 031781 47 IQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPG 126 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~ 126 (153)
++++.||.|+++|.++. +|+.++++. ..+..|.+|.+.+++||+++|.||++|+++.+.++++..|+....+
T Consensus 156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~la----- 227 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLA----- 227 (435)
T ss_pred ccCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCC-----
Confidence 46899999999999998 898887763 3578999999999999999999999999999999999888775554
Q ss_pred CCeEEEEEEEEeecCCCCCCCC
Q 031781 127 GATLIFDTELVTVNGKPASGEK 148 (153)
Q Consensus 127 ~~~l~~~v~l~~i~~~~~~~~~ 148 (153)
|.++.|+|+|.+|+....|...
T Consensus 228 gk~~~f~v~v~~V~~~~~pel~ 249 (435)
T PRK01490 228 GKEATFKVTVKEVKEKELPELD 249 (435)
T ss_pred CCeEEEEEEEEEeccCCCCCCC
Confidence 7799999999999988777443
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.4e-12 Score=102.43 Aligned_cols=94 Identities=28% Similarity=0.583 Sum_probs=83.6
Q ss_pred cCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCCCCCCCC
Q 031781 49 AHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGA 128 (153)
Q Consensus 49 ~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~ 128 (153)
++.||.|+++|.++. ||..|... ..+.+.+.+|+++++|||+++|.||++|++..|.|..+..|....++ |.
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~La-----GK 229 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELA-----GK 229 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhC-----CC
Confidence 899999999999987 99988876 33568999999999999999999999999999999999999877666 67
Q ss_pred eEEEEEEEEeecCCCCCCCCCc
Q 031781 129 TLIFDTELVTVNGKPASGEKTE 150 (153)
Q Consensus 129 ~l~~~v~l~~i~~~~~~~~~~~ 150 (153)
+..|.|+|..|+.+..+..+|+
T Consensus 230 ~a~F~V~vkeVk~~elpEldDE 251 (441)
T COG0544 230 EATFKVKVKEVKKRELPELDDE 251 (441)
T ss_pred ceEEEEEEEEEeecCCCCCCHH
Confidence 9999999999999998865543
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-10 Score=93.00 Aligned_cols=81 Identities=54% Similarity=0.947 Sum_probs=73.8
Q ss_pred eCCCccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCC
Q 031781 42 PKTCDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSP 121 (153)
Q Consensus 42 ~~~~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~ 121 (153)
++.+...|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.++++.+|..++..|+. |..+.+
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p 66 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP 66 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCCC
Confidence 345567899999999999999999999999988 78999999999999999999999998 677788
Q ss_pred CCCCCCCeEEEEEEEE
Q 031781 122 PTIPGGATLIFDTELV 137 (153)
Q Consensus 122 ~~ip~~~~l~~~v~l~ 137 (153)
+.||++++|.|+|+++
T Consensus 67 p~ip~~a~l~fe~el~ 82 (397)
T KOG0543|consen 67 PKIPSNATLLFEVELL 82 (397)
T ss_pred CCCCCCcceeeeeccc
Confidence 8999999999999974
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.6e-08 Score=74.13 Aligned_cols=105 Identities=24% Similarity=0.342 Sum_probs=81.3
Q ss_pred ccCCCCEEEEEEEEEeC--CCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeCCC------------
Q 031781 48 QAHKGDKIKVHYRGKLT--DGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKL------------ 113 (153)
Q Consensus 48 ~~~~gd~V~v~y~~~~~--dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~------------ 113 (153)
.-..|..|++||..... .++++|+|..-|+|..+.+|..--++-|+..|..|++++.+.|++....
T Consensus 26 e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLR 105 (329)
T KOG0545|consen 26 EFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLR 105 (329)
T ss_pred cccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHH
Confidence 45689999999999765 5679999999999999999987788999999999999999988775421
Q ss_pred --CCCCC--------------------CC---CCCCCCCCeEEEEEEEEeecCCC----CCCCCCcCC
Q 031781 114 --GYGAQ--------------------GS---PPTIPGGATLIFDTELVTVNGKP----ASGEKTEDE 152 (153)
Q Consensus 114 --ayg~~--------------------g~---~~~ip~~~~l~~~v~l~~i~~~~----~~~~~~~~~ 152 (153)
+-|.. |+ ......-++|+|.++++.|+.++ ++|.|+++|
T Consensus 106 dia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wqlsdde 173 (329)
T KOG0545|consen 106 DIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDE 173 (329)
T ss_pred HHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchH
Confidence 11111 11 00122358999999999998876 589888764
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0003 Score=51.02 Aligned_cols=55 Identities=47% Similarity=0.742 Sum_probs=42.1
Q ss_pred EeCCCchhHHHHHHHcCCCCCcEEEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 031781 82 ELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 140 (153)
Q Consensus 82 ~lg~~~~~~g~~~al~~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~ 140 (153)
.++.+.++++.+.+|.+|+.|+++++.+||.++||..+... -..++|.+.++.+.
T Consensus 2 ~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~~----~~~~~~~~~l~~~~ 56 (188)
T KOG0549|consen 2 TLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRGD----LNILVITILLVLLF 56 (188)
T ss_pred cccceEEecCHHHHhhhhhccccceeccCCccccccccccc----ccceEEEeeeeehh
Confidence 45777899999999999999999999999999999544321 12356666655543
No 19
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=92.04 E-value=0.11 Score=35.17 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=23.1
Q ss_pred HHHHHHhhhHHhccCCCceeeecceEEee
Q 031781 14 SFLLVLSTLVSANKSGDVTELQIGVKYKP 42 (153)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 42 (153)
-.-.--.|++.|++++.+.+|+||++|++
T Consensus 96 ~~~~~~~fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 96 NKAEGEAFLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHHHHHHHHTSTTEEE-TTS-EEEE
T ss_pred hHHHHHHHHHHHcCCCCCEECCCCCeeeC
Confidence 45556678999999999999999999985
No 20
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=79.91 E-value=2.5 Score=20.67 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHHHHHHh
Q 031781 1 MSFNSVLNIAAAISFLLVLS 20 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (153)
++||.+|+.........++.
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 68999999755554444433
No 21
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=78.19 E-value=15 Score=26.17 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.3
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 88 VIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
....+..||.|-++||.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 445789999999999999988765
No 22
>PRK02710 plastocyanin; Provisional
Probab=75.80 E-value=10 Score=25.53 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHHHHHHhhhHHhccCCCceeeec-----ceEEeeCCCccccCCCCEEEE
Q 031781 1 MSFNSVLNIAAAISFLLVLSTLVSANKSGDVTELQI-----GVKYKPKTCDIQAHKGDKIKV 57 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~gd~V~v 57 (153)
|++|-.+.+++++++++.++..+..+..+.. +... +..|.+ ..-.++.||.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~-~V~~~~~~~~~~F~P--~~i~v~~Gd~V~~ 59 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETV-EVKMGSDAGMLAFEP--STLTIKAGDTVKW 59 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceE-EEEEccCCCeeEEeC--CEEEEcCCCEEEE
Confidence 4555555555555555555544444333322 1111 234443 3456888998764
No 23
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=65.03 E-value=15 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.7
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 88 VIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
....+..||.|.++||.+.+..|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 446799999999999999988765
No 24
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=64.47 E-value=18 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.1
Q ss_pred chhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 87 HVIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 87 ~~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
+....+..||.|.++|+.+.+..|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 3456789999999999999998765
No 25
>PHA02122 hypothetical protein
Probab=64.11 E-value=13 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=17.3
Q ss_pred CCCCEEEEEEEEEeCCCCEEec
Q 031781 50 HKGDKIKVHYRGKLTDGTVFDS 71 (153)
Q Consensus 50 ~~gd~V~v~y~~~~~dg~~~~s 71 (153)
..||.|.++|..+. +|+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 46899999999997 8887744
No 26
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=63.69 E-value=8.8 Score=20.79 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=7.7
Q ss_pred CchhHHHHH
Q 031781 1 MSFNSVLNI 9 (153)
Q Consensus 1 ~~~~~~~~~ 9 (153)
|+||.+||.
T Consensus 6 m~RR~lmN~ 14 (39)
T PF08802_consen 6 MSRRQLMNL 14 (39)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 479999996
No 27
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=62.51 E-value=19 Score=24.98 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.8
Q ss_pred chhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 87 HVIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 87 ~~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
+....+..||.|.++|+.+.+..|.
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCC
Confidence 3556799999999999999987654
No 28
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=59.66 E-value=31 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.4
Q ss_pred chhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 87 HVIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 87 ~~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
+....+..||.|.++||.+.+..|.
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCC
Confidence 4556799999999999999988765
No 29
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=58.07 E-value=20 Score=25.48 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 88 VIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
+...+..||.|-++||.+.+.+|.
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCC
Confidence 346799999999999999988766
No 30
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=57.35 E-value=26 Score=20.90 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=27.4
Q ss_pred CCceeeecceEEeeCC--CccccCCCCEEEEEEEEEe
Q 031781 29 GDVTELQIGVKYKPKT--CDIQAHKGDKIKVHYRGKL 63 (153)
Q Consensus 29 ~~~~~~~~g~~~~~~~--~~~~~~~gd~V~v~y~~~~ 63 (153)
....++.+|--|+-.. .-..++.|..|.++|....
T Consensus 16 ~~titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 16 TMTITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred ceEEEecCCCEEECCCcccccccCCCCEEEEEEEccC
Confidence 3457889999998643 3577999999999998773
No 31
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=57.15 E-value=35 Score=24.77 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=20.5
Q ss_pred CceeeecceEEeeCCCccccCCCCEEEEE
Q 031781 30 DVTELQIGVKYKPKTCDIQAHKGDKIKVH 58 (153)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~gd~V~v~ 58 (153)
...+++-|++... ...++.||.|.+.
T Consensus 35 ~T~S~P~glY~~~---~~~~~~Gd~V~f~ 60 (178)
T PRK13884 35 TTKSIPVGLYWTS---SAPVEKGAYVLFC 60 (178)
T ss_pred CCCCCcceEEEEe---CCCCCCCCEEEEe
Confidence 3478899999864 3469999999886
No 32
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=56.97 E-value=12 Score=23.04 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.8
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 88 VIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
....+..||.|.++||.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 445799999999999999998865
No 33
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=56.16 E-value=31 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=18.6
Q ss_pred ceeeecceEEeeCCCccccCCCCEEEEE
Q 031781 31 VTELQIGVKYKPKTCDIQAHKGDKIKVH 58 (153)
Q Consensus 31 ~~~~~~g~~~~~~~~~~~~~~gd~V~v~ 58 (153)
..+.+.|++. .......++.||.|.++
T Consensus 34 T~S~pig~y~-~~~~~~~~~rGDiVvf~ 60 (176)
T PRK13838 34 TPSEPLGLWR-IEALDRPVAVGDLVFIC 60 (176)
T ss_pred CCCCEEEEEE-EeccCCCCCCCcEEEEE
Confidence 3456666665 33345679999999986
No 34
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=56.08 E-value=14 Score=18.36 Aligned_cols=17 Identities=29% Similarity=0.102 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHHH
Q 031781 1 MSFNSVLNIAAAISFLL 17 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (153)
++||++|+..+....++
T Consensus 1 ~sRR~Flk~~~~~~a~~ 17 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAA 17 (29)
T ss_pred CchhhhHHHHHHHHHHH
Confidence 58999999754444443
No 35
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=54.55 E-value=15 Score=23.46 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=17.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhhHHh
Q 031781 1 MSFNSVLNIAAAISFLLVLSTLVSA 25 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (153)
|+||.++..+.++.+-.+++.+++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQK 25 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQK 25 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccc
Confidence 6899888877776666666655433
No 36
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=51.16 E-value=63 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=34.3
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~~ 105 (153)
..+.+++||.|.+++-... +|-..+. ..+|.+|... +..+.+.++..+|+|-+.
T Consensus 73 ~~r~l~~GD~v~~d~g~~~-~GY~ad~------~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 73 TNRKVQRGDILSLNCFPMI-AGYYTAL------ERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred CCcccCCCCEEEEEEeEEE-CCEeeee------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 5678899999999988765 6643332 2455566322 335566666667776553
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.54 E-value=21 Score=23.20 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 031781 4 NSVLNIAAAISFLLVLST 21 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (153)
..+|.++.+++.+|++++
T Consensus 4 K~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLISS 21 (95)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344444333333333333
No 38
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=48.99 E-value=84 Score=24.34 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=36.6
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc------hh----HHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH------VI----KGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~------~~----~g~~~al~~mk~G~~~ 105 (153)
.....++||.|.++..... ||-.-|+. .+|.+|... ++ .++..++..+++|-+.
T Consensus 83 d~~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 83 DKKVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred CCcccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 3466899999999998887 88655443 677788321 33 4466666667776653
No 39
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=48.12 E-value=30 Score=20.83 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCcEEEEEeeC
Q 031781 90 KGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 90 ~g~~~al~~mk~G~~~~~~vp~ 111 (153)
+.+..|+..|+.||++.++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 5688999999999999998755
No 40
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.04 E-value=96 Score=22.60 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.1
Q ss_pred CccccCCCCEEEEEEEEEeC
Q 031781 45 CDIQAHKGDKIKVHYRGKLT 64 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~ 64 (153)
..+.+..|+.++|.|++++.
T Consensus 30 l~~~~v~g~~v~V~~~iyN~ 49 (181)
T PF05753_consen 30 LNKYLVEGEDVTVTYTIYNV 49 (181)
T ss_pred ccccccCCcEEEEEEEEEEC
Confidence 35668889999999999986
No 41
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=44.18 E-value=1.1e+02 Score=22.62 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=35.0
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC-------ch-------hHHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG-------HV-------IKGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~-------~~-------~~g~~~al~~mk~G~~~ 105 (153)
..+.++.||.|.+++-... +|-.-|.+ .+|.+|.. .. ..+.+.++..+++|-+.
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 4567899999999997776 77444433 45556632 11 24456667778888654
No 42
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=42.91 E-value=82 Score=24.54 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=35.4
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc------hhHHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH------VIKGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~------~~~g~~~al~~mk~G~~~ 105 (153)
+...+++||.|.++.-... ||-..|.+ .++.+|... ...+.+.++..+++|-+.
T Consensus 67 d~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3467899999999987765 77544433 455566321 235566677777777653
No 43
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=41.83 E-value=94 Score=24.30 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=33.9
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC--ch----hHHHHHHHcCCCCCcE
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG--HV----IKGWDQGLLGMCVGEK 104 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~--~~----~~g~~~al~~mk~G~~ 104 (153)
...+++||.|.++.-... ||-..+.+ .++.+|.. .+ ..+.+.++..+++|-+
T Consensus 72 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~ 129 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVR 129 (295)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 457899999999987666 77544444 56666643 22 3445556666777654
No 44
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=39.92 E-value=70 Score=17.98 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.6
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG 86 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~ 86 (153)
..+++.|+.+.+..+.+..+|..+... ++.+..+.+
T Consensus 6 aakaK~Ge~I~ltVt~kda~G~pv~n~-----~f~l~r~~~ 41 (47)
T PF05688_consen 6 AAKAKVGETIPLTVTVKDANGNPVPNA-----PFTLTRGDA 41 (47)
T ss_pred hhheecCCeEEEEEEEECCCCCCcCCc-----eEEEEecCc
Confidence 456889999999999998888776544 777776643
No 45
>PRK08671 methionine aminopeptidase; Provisional
Probab=38.18 E-value=1.1e+02 Score=23.79 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=34.0
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC--c----hhHHHHHHHcCCCCCcE
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG--H----VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~--~----~~~g~~~al~~mk~G~~ 104 (153)
.+.+++||.|.+++-... ||-..|.+ .++.+|.. . ...+.+.++..+++|-+
T Consensus 69 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred CcccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467899999999987665 77544443 45666632 1 23556666677777754
No 46
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=38.09 E-value=1e+02 Score=21.71 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.4
Q ss_pred chhHHHHHHHcCCCCCcEEEEEee
Q 031781 87 HVIKGWDQGLLGMCVGEKRKLKIP 110 (153)
Q Consensus 87 ~~~~g~~~al~~mk~G~~~~~~vp 110 (153)
+....+..||.|.++||.+.+..|
T Consensus 114 S~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 114 SVDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred eccCHHHHHHhCCCCCCEEEEecC
Confidence 345678899999999999998876
No 47
>PRK12897 methionine aminopeptidase; Reviewed
Probab=37.86 E-value=1.6e+02 Score=22.07 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=35.5
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~~ 105 (153)
.++.++.||.|.+.+-... +|-.-|.+ .+|.+|... +..+.+.++..+++|-+.
T Consensus 81 ~~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 81 ADVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CCcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4567999999999987765 66544443 456666432 234566677778887553
No 48
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=37.06 E-value=81 Score=26.70 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=34.9
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC--c----hhHHHHHHHcCCCCCcE
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG--H----VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~--~----~~~g~~~al~~mk~G~~ 104 (153)
...++.||.|.+++-... ||-..+.+ .++.+|.. . +..+.+.|+.-+++|-+
T Consensus 231 ~~vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 231 KTVLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred CcEecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 467899999999998877 88766665 45555632 1 23455556666666654
No 49
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=36.96 E-value=63 Score=22.55 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHhccCCCceeeecceEEeeCCCccccCCCCEEEEEEEEEe
Q 031781 10 AAAISFLLVLSTLVSANKSGDVTELQIGVKYKPKTCDIQAHKGDKIKVHYRGKL 63 (153)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~gd~V~v~y~~~~ 63 (153)
...+.++++...+.+|..+-++++.-.-- .....--.++..|..|.+.+....
T Consensus 6 ~~~~~~~~~~~~l~sC~deLDIQQ~YpF~-v~tmPVpk~I~~GeTvEIR~~l~r 58 (137)
T PF12988_consen 6 IIGCCLLLALLLLSSCDDELDIQQAYPFT-VETMPVPKKIKKGETVEIRCELKR 58 (137)
T ss_dssp -----------------TTS------SEE-EEE----SS--TTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCccceeecCCcE-EEEeccccccCCCCEEEEEEEEec
Confidence 34444555555556666555554332221 122333456889999999998876
No 50
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=36.30 E-value=77 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=17.6
Q ss_pred hhHHHHHHHcCCCCCcEEEE
Q 031781 88 VIKGWDQGLLGMCVGEKRKL 107 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~ 107 (153)
+...+..||.|.++|+.+.+
T Consensus 130 ~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 130 YVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred ccCHHHHHHcCCCCCCEEEE
Confidence 45679999999999999986
No 51
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=35.15 E-value=1.5e+02 Score=24.36 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCC----------ch----hHHHHHHHcCCCCCcEEE
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSG----------HV----IKGWDQGLLGMCVGEKRK 106 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~----------~~----~~g~~~al~~mk~G~~~~ 106 (153)
...++.||.|.+++-... ||-..+.+ .+|.+|.. .+ ..+++.++..+++|-+..
T Consensus 98 ~~~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~~ 165 (389)
T TIGR00495 98 DYILKEGDVVKIDLGCHI-DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTNT 165 (389)
T ss_pred CcCcCCCCEEEEEEEEEE-CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 367899999999998877 88555444 56666631 12 244566777777776543
No 52
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=32.83 E-value=1.3e+02 Score=21.81 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=25.1
Q ss_pred eecceEEeeCCCccccCCC-CEEEEEEEEEeCCCCEEe
Q 031781 34 LQIGVKYKPKTCDIQAHKG-DKIKVHYRGKLTDGTVFD 70 (153)
Q Consensus 34 ~~~g~~~~~~~~~~~~~~g-d~V~v~y~~~~~dg~~~~ 70 (153)
--.|.+|.+.--.+..+.| ..|+.+|..+..++-.+.
T Consensus 35 ~Y~G~WyEvaR~p~~f~~gc~~vtA~Y~l~d~~~I~V~ 72 (174)
T COG3040 35 RYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGISVI 72 (174)
T ss_pred hcceeeeeeecccchhhhcceeeEeEEEEecCCceEEE
Confidence 3468888887666777766 367889988775443333
No 53
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=32.82 E-value=85 Score=25.15 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=24.4
Q ss_pred CchhHHHHHHHHHHHHHHHhhhHHhccCCCceeeecceEEee
Q 031781 1 MSFNSVLNIAAAISFLLVLSTLVSANKSGDVTELQIGVKYKP 42 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 42 (153)
+.||++..+++.|+++++..+.......+-..+...|.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvtD~~Gr~V~i 44 (374)
T PRK14048 3 LCRRSLVRLVAFLAIAFLALSALAEVQWPMTVTDAVGREVTI 44 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhhhhcCCeEEEeCCCCEEec
Confidence 369999998777777766665544333322233346654433
No 54
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=32.64 E-value=2.1e+02 Score=21.30 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
.++.++.||.|.+++-... +|-.-+.+ .+|.+|... +..+.+.++..+++|-+
T Consensus 80 ~~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 80 DKKVLKDGDIVNIDVGVIY-DGYHGDTA------KTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4678999999999988776 66444433 456666311 23456666677777744
No 55
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=32.35 E-value=11 Score=16.76 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHhh
Q 031781 7 LNIAAAISFLLVLST 21 (153)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (153)
|++...++.|++.++
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 444334444444443
No 56
>PRK00809 hypothetical protein; Provisional
Probab=31.69 E-value=69 Score=22.43 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=19.8
Q ss_pred hhHHHHHHHcCCCCCcEEEEEeeCC
Q 031781 88 VIKGWDQGLLGMCVGEKRKLKIPAK 112 (153)
Q Consensus 88 ~~~g~~~al~~mk~G~~~~~~vp~~ 112 (153)
+..+=...|..|++||.+.++.+..
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc
Confidence 3445566777899999999999875
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.65 E-value=50 Score=21.23 Aligned_cols=47 Identities=17% Similarity=0.329 Sum_probs=25.4
Q ss_pred ccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchhHHHHHHHcCCCCCcEEEEEeeC
Q 031781 46 DIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPA 111 (153)
Q Consensus 46 ~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~~g~~~al~~mk~G~~~~~~vp~ 111 (153)
.-.++.|+.|++.++-. |.. +..|.+.. +... ..+..|++.++.+++
T Consensus 36 ~i~v~~G~~v~l~~~N~--~~~----------~h~~~i~~------~~~~-~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNN--DSR----------PHEFVIPD------LGIS-KVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE---SSS-----------EEEEEGG------GTEE-EEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEEC--CCC----------cEEEEECC------CceE-EEECCCCEEEEEEcC
Confidence 55688999888876543 222 23333332 1111 467788888888754
No 58
>PLN03158 methionine aminopeptidase; Provisional
Probab=30.06 E-value=2.3e+02 Score=23.39 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=35.0
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
..+.+++||.|.++..... +|---|-+ .+|.+|.-. ...+++.++.-+++|-+
T Consensus 214 ~~r~L~~GDiV~iDvg~~~-~GY~aD~t------RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 214 DARKLEDGDIVNVDVTVYY-KGCHGDLN------ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred CCccCCCCCEEEEEEeEEE-CCEEEeEE------eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4577899999999998876 77433322 455666321 34566667777777744
No 59
>PRK12896 methionine aminopeptidase; Reviewed
Probab=29.70 E-value=2.4e+02 Score=21.05 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=32.7
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
.++.++.||.|.+++-... +|-.-+. ..+|.+|... +..+.+.++..|++|-+
T Consensus 87 ~~~~l~~Gd~v~iD~g~~~-~gY~aD~------~RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 87 GPRVIKDGDLVNIDVSAYL-DGYHGDT------GITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred CCccCCCCCEEEEEEeEEE-CcEEEee------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4577899999999988765 5533332 2455566321 23556666666777633
No 60
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=29.60 E-value=2.3e+02 Score=20.85 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=32.2
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
..+.+++||.|.+.+-... +|-.-+-+ .+|.+|... +..+.+.++..+++|-+
T Consensus 72 ~~~~l~~Gd~v~id~g~~~-~GY~ad~~------RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 133 (238)
T cd01086 72 DDRVLKDGDIVNIDVGVEL-DGYHGDSA------RTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNR 133 (238)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4677899999999988765 66433333 455566421 23445555556666543
No 61
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=3e+02 Score=21.88 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=55.0
Q ss_pred cCCCceeeecceEEeeCCCccc-----------cCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCchh-HHHHH
Q 031781 27 KSGDVTELQIGVKYKPKTCDIQ-----------AHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVI-KGWDQ 94 (153)
Q Consensus 27 ~~~~~~~~~~g~~~~~~~~~~~-----------~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~~~-~g~~~ 94 (153)
+......+-+|+..-+..+|+. .++||.|.|.|.-. .-|+-+.- +|....+-+-.-+ .-+|.
T Consensus 65 n~~~~r~THcGVLEF~AeEG~vyLP~WMmq~L~le~gdlv~i~~v~l-pkgtyvKL-----qP~s~dFLDItNpKAvLE~ 138 (308)
T KOG1816|consen 65 NVDVDRVTHCGVLEFTAEEGRVYLPYWMMQNLLLEEGDLVRIRSVTL-PKGTYVKL-----QPHSVDFLDITNPKAVLEN 138 (308)
T ss_pred ccccceeeeeeEEEEEecCceEEeehHhhhhccCCCCCeEEEEEeec-cccceeee-----ccCCCCccccCChHHHHHH
Confidence 3344577888887665444433 57899999988543 45654432 2333322222223 33677
Q ss_pred HHc---CCCCCcEEEEEeeCCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCCC
Q 031781 95 GLL---GMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGKPA 144 (153)
Q Consensus 95 al~---~mk~G~~~~~~vp~~~ayg~~g~~~~ip~~~~l~~~v~l~~i~~~~~ 144 (153)
+|. .+..||.+.+- |+ ...|+++|+++++...
T Consensus 139 ~LRn~acLT~gDvi~i~------Yn------------~k~y~i~V~e~kPa~a 173 (308)
T KOG1816|consen 139 ALRNYACLTTGDVILIN------YN------------EKTYELKVVETKPANA 173 (308)
T ss_pred HHhhccccccCCEEEEe------cC------------CeEEEEEEEEecCCce
Confidence 775 58899987653 22 2356777777776443
No 62
>PRK12318 methionine aminopeptidase; Provisional
Probab=27.12 E-value=2.7e+02 Score=21.69 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=33.3
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
.++.+++||.|.+.+-... +|-.-+.+ .+|.+|... +..+.+.++..+++|-+
T Consensus 122 ~~~~l~~GD~V~vD~g~~~-~GY~aDit------RT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~ 183 (291)
T PRK12318 122 NDIPLKNGDIMNIDVSCIV-DGYYGDCS------RMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIP 183 (291)
T ss_pred CCCccCCCCEEEEEEeEEE-CcEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4577999999999998776 66434333 455566421 23445555666677643
No 63
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.66 E-value=1.9e+02 Score=19.76 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.4
Q ss_pred cccCCCCEEEEEEEEEeC
Q 031781 47 IQAHKGDKIKVHYRGKLT 64 (153)
Q Consensus 47 ~~~~~gd~V~v~y~~~~~ 64 (153)
+.+.+||.|++||--+..
T Consensus 69 r~iadGdLV~vh~hqt~~ 86 (129)
T COG4922 69 RVIADGDLVTVHYHQTVS 86 (129)
T ss_pred EEeccCCEEEEEEeeeeC
Confidence 558899999999988864
No 64
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=26.60 E-value=1e+02 Score=18.00 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=13.0
Q ss_pred CCCeEEEEEEEEeecCCC
Q 031781 126 GGATLIFDTELVTVNGKP 143 (153)
Q Consensus 126 ~~~~l~~~v~l~~i~~~~ 143 (153)
|++.+.|+.+|+++...+
T Consensus 17 P~s~lYYe~kV~~~d~~~ 34 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKS 34 (55)
T ss_dssp TTTS-EEEEEEEEEETTT
T ss_pred CCCCcEEEEEEEEecccC
Confidence 466788999999976654
No 65
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=25.28 E-value=1.1e+02 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=21.7
Q ss_pred CceeeecceEEeeCCCccccCCCCEEEEEEE
Q 031781 30 DVTELQIGVKYKPKTCDIQAHKGDKIKVHYR 60 (153)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~~~~gd~V~v~y~ 60 (153)
...+++-|+++.. ....++.||.|.++..
T Consensus 30 ~T~S~P~g~Y~~~--~~~~~~rGDiVvf~~p 58 (171)
T TIGR02771 30 TTKSLPLGLYWTT--SSKPVERGDYVVFCPP 58 (171)
T ss_pred CCCCCcceEEEeC--CCCCCCCCcEEEEeCC
Confidence 3478888998733 3457999999999753
No 66
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=24.98 E-value=69 Score=23.73 Aligned_cols=28 Identities=7% Similarity=-0.046 Sum_probs=21.4
Q ss_pred CCchhHHHHHHHcCCCCCcEEEEEeeCCCC
Q 031781 85 SGHVIKGWDQGLLGMCVGEKRKLKIPAKLG 114 (153)
Q Consensus 85 ~~~~~~g~~~al~~mk~G~~~~~~vp~~~a 114 (153)
.+++++.|.+++..|++|+.. . |....+
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G 216 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNN 216 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCc
Confidence 447889999999999999975 3 544333
No 67
>PRK12450 foldase protein PrsA; Reviewed
Probab=24.80 E-value=95 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.7
Q ss_pred EEeCCCchhHHHHHHHcCCCCCcEEEEE
Q 031781 81 FELGSGHVIKGWDQGLLGMCVGEKRKLK 108 (153)
Q Consensus 81 ~~lg~~~~~~g~~~al~~mk~G~~~~~~ 108 (153)
|.-+..++++.|++|+..|++|+...+.
T Consensus 195 f~~~~~~l~~ef~~aa~~Lk~GevS~~i 222 (309)
T PRK12450 195 FDSGETTLPAEVVRAASGLKEGNRSEII 222 (309)
T ss_pred ccCCCCCCCHHHHHHHHcCCCCCccccc
Confidence 3334457999999999999999985543
No 68
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.79 E-value=1e+02 Score=19.11 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCCcEEEEEeeCCCCC
Q 031781 91 GWDQGLLGMCVGEKRKLKIPAKLGY 115 (153)
Q Consensus 91 g~~~al~~mk~G~~~~~~vp~~~ay 115 (153)
-..++|..|+.|+...+....+.+.
T Consensus 21 ~~kk~l~~m~~Ge~LeV~~ddp~~~ 45 (78)
T COG0425 21 ETKKALAKLKPGEILEVIADDPAAK 45 (78)
T ss_pred HHHHHHHcCCCCCEEEEEecCcchH
Confidence 4778999999999999998776554
No 69
>PRK05716 methionine aminopeptidase; Validated
Probab=24.25 E-value=3e+02 Score=20.42 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=32.8
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEK 104 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~ 104 (153)
.++.+++||.|.+.+-... +|-.-+.+ .++.+|... +..+.+.++..|++|-+
T Consensus 82 ~~~~l~~Gd~v~id~g~~~-~gY~~d~~------RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 143 (252)
T PRK05716 82 SDKVLKEGDIVNIDVTVIK-DGYHGDTS------RTFGVGEISPEDKRLCEVTKEALYLGIAAVKPGAR 143 (252)
T ss_pred CCcccCCCCEEEEEEEEEE-CCEEEEeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4578999999999988776 66444433 455556421 22445555566666644
No 70
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=23.81 E-value=2.2e+02 Score=23.14 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=33.8
Q ss_pred CccccCCCCEEEEEEEEEeCCCCEEecccCCCccEEEEeCCCc---------hhHHHHHHHcCCCCCcEE
Q 031781 45 CDIQAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGH---------VIKGWDQGLLGMCVGEKR 105 (153)
Q Consensus 45 ~~~~~~~gd~V~v~y~~~~~dg~~~~st~~~~~~~~~~lg~~~---------~~~g~~~al~~mk~G~~~ 105 (153)
+++.++.||.|.+++-+.. +|=.-+- ..++.+|... +..+.+.++..+|+|-+.
T Consensus 234 ~~~~l~~gd~v~iD~g~~~-~GY~sD~------tRT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~ 296 (391)
T TIGR02993 234 DDSPMKVGEGTFFEIAGCY-KRYHCPL------SRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTC 296 (391)
T ss_pred CCCcccCCCEEEEEeeeec-ccCccce------eEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 4567899999999887665 5432222 3556666432 345566667777777654
No 71
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=23.55 E-value=1.2e+02 Score=19.04 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.7
Q ss_pred eCCCchhHHHHHHHcCCCCCcEEEEE
Q 031781 83 LGSGHVIKGWDQGLLGMCVGEKRKLK 108 (153)
Q Consensus 83 lg~~~~~~g~~~al~~mk~G~~~~~~ 108 (153)
+..+++.+.+.+++..|++|+.....
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 34458999999999999999988654
No 72
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=1.6e+02 Score=19.24 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=26.9
Q ss_pred HhccCCCceeeecceEEeeCCCccccCCCCEEEE
Q 031781 24 SANKSGDVTELQIGVKYKPKTCDIQAHKGDKIKV 57 (153)
Q Consensus 24 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~gd~V~v 57 (153)
..-..-+...-+-|++-+...-...+.+||.|.+
T Consensus 40 ~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEI 73 (99)
T COG2914 40 ELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEI 73 (99)
T ss_pred hccccCCccccceeEEccccCccccccCCCEEEE
Confidence 3445556777888999888877788999999987
No 73
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.37 E-value=2.4e+02 Score=19.86 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031781 5 SVLNIAAAISFLLVLSTL 22 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (153)
-++.+++.++++.+..++
T Consensus 8 rl~~~~~~~~~~~~~~~L 25 (148)
T PRK13254 8 RLLIILGALAALGLAVAL 25 (148)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 74
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=21.35 E-value=1.4e+02 Score=17.95 Aligned_cols=9 Identities=22% Similarity=-0.016 Sum_probs=7.6
Q ss_pred CchhHHHHH
Q 031781 1 MSFNSVLNI 9 (153)
Q Consensus 1 ~~~~~~~~~ 9 (153)
++||.+|+.
T Consensus 9 ~sRR~Flk~ 17 (66)
T TIGR02811 9 PSRRDLLKG 17 (66)
T ss_pred ccHHHHHHH
Confidence 489999994
Done!