BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031782
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 211 bits (538), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 110/134 (82%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHR
Sbjct: 83 INAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHR 142
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D
Sbjct: 143 KKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQE 202
Query: 136 XXXXXSQPLPDDDD 149
+ PLPD+DD
Sbjct: 203 MEQATALPLPDEDD 216
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 205 bits (521), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 205 bits (521), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 145
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 146 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 205
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 206 LEVAQTTALPDEDDD 220
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 204 bits (520), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 145
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 146 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 205
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 206 LEVAQTTALPDEDDD 220
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 107/135 (79%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 202 bits (513), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 106/135 (78%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV P LAPPEV +D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVMDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 201 bits (511), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 105/135 (77%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAII FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV D
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVXDPALAAQYEHD 200
Query: 136 XXXXXSQPLPDDDDD 150
+ LPD+DDD
Sbjct: 201 LEVAQTTALPDEDDD 215
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 197 bits (501), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/131 (70%), Positives = 103/131 (78%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 74 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 133
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXX 135
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D
Sbjct: 134 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 193
Query: 136 XXXXXSQPLPD 146
+ LPD
Sbjct: 194 LEVAQTTALPD 204
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 83 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 142
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 115
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV P
Sbjct: 143 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 90/100 (90%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 77 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 136
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 115
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV P
Sbjct: 137 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 179 bits (454), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 90/97 (92%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHR
Sbjct: 76 INAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHR 135
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 112
KKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 136 KKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 179 bits (454), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/97 (84%), Positives = 90/97 (92%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHR
Sbjct: 75 INAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHR 134
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 112
KKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 135 KKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 178 bits (451), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/97 (83%), Positives = 89/97 (91%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 112
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 88/96 (91%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
I QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 111
KKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH 74
I AI+ FDVT+R+T +N+ W ++ V N PIV+C NK+D+KNRQ +K++
Sbjct: 83 IGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVME 142
Query: 75 --RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 125
+ KN +Y+EISAK+ +NF PFL+LAR G P+L FV + L P EV D
Sbjct: 143 VLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 195
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVT 72
C +++FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYLAR 101
+ K N+ Y+E SAK N E+ F +AR
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVT 72
C +++FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYLAR 101
+ K N+ Y+E SAK N E+ F +AR
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVT 72
C +++FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYLAR 101
+ K N+ Y+E SAK N E+ F +AR
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVT 72
C +++FDVTA T+K + +W + R EN P V+ GNK+D +NRQV K Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAW 142
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYLAR 101
+ K N+ Y+E SAK N E+ F +AR
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKK 77
A++++D+T+R TY + W D + +NI I+LCGNK D+ +R+V + + F ++
Sbjct: 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN 145
Query: 78 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 122
L + E SA + N E+ F+ ARK+ L+ +ES L P +
Sbjct: 146 ELMFLETSALTGENVEEAFVQCARKI-----LNKIESGELDPERM 185
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T + T+ TW ++L R +I I L GNK D+ N R V+ ++ +
Sbjct: 81 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYA 140
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK+ N FL +A+KL
Sbjct: 141 DDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVT-FHRKK 77
A++++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++
Sbjct: 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN 160
Query: 78 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 122
L + E SA + N E+ FL AR + L+ ++S L P +
Sbjct: 161 ELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKK 77
A++++D+T+R TY + W D + +NI I+LCGNK D+ +R+V + + F ++
Sbjct: 87 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN 146
Query: 78 NLQYYEISAKSNYNFEKPFLYLARKL 103
L + E SA + + E+ F+ ARK+
Sbjct: 147 ELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKN 78
I+ +D+T +++ +P W R++ + N + VL GNK+D+ R+ ++Q F ++
Sbjct: 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD 162
Query: 79 LQYYEISAKSNYNFEKPFLYLARKL 103
+ Y E SAK + N EK FL LA +L
Sbjct: 163 MYYLETSAKESDNVEKLFLDLACRL 187
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKK 77
A++++D+T+R TY + W D + +NI I+LCGNK D+ +R+V + + F ++
Sbjct: 84 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN 143
Query: 78 NLQYYEISAKSNYNFEKPFLYLARKL 103
L + E SA + + E+ F+ ARK+
Sbjct: 144 ELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRK 76
A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K + F R+
Sbjct: 85 GALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFARE 144
Query: 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103
L + E SAK+ N E+ F+ A+++
Sbjct: 145 HGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 139
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 140 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 78 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 137
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 138 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F+ +A+KL
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 19 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQV-KAKQVTFHR 75
Q I+++DVT R T+ + W +L C IV L GNK+D +NR+V + + + F R
Sbjct: 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFAR 148
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 120
K + + E SAK+ + F L K+ P L E+ P
Sbjct: 149 KHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHR 75
A++++D+T R TY ++ +W D + N I+L GNK D++ R V +AKQ F
Sbjct: 106 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAE 163
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ L + E SAK+ N E FL A+K+
Sbjct: 164 ENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ +
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 137
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK+ N + F+ +A+KL
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHR 75
A++++D+T R TY ++ +W D + N I+L GNK D++ R V +AKQ F
Sbjct: 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAE 148
Query: 76 KKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ L + E SAK+ N E FL A+K+
Sbjct: 149 ENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ +
Sbjct: 76 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 135
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK+ N + F+ +A+KL
Sbjct: 136 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ +
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 137
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK+ N + F+ +A+KL
Sbjct: 138 DDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKK 77
A++++D+T R T+ ++ +W D + N+ I+L GNK D+++R+ VK ++ F R+
Sbjct: 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH 156
Query: 78 NLQYYEISAKSNYNFEKPFLYLARKL 103
L + E SAK+ N E+ F+ A+++
Sbjct: 157 GLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHR 75
Q AI+++D+T ++ W ++L R NI I L GNK D+ N R V ++ +
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 139
Query: 76 KKN-LQYYEISAKSNYNFEKPFLYLARKL 103
N L + E SAK++ N + F +A+KL
Sbjct: 140 DDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L + NI I+L GNK D+++ R V + F K
Sbjct: 80 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 77 KNLQYYEISAKSNYNFEKPF 96
NL + E SA + N E+ F
Sbjct: 140 NNLSFIETSALDSTNVEEAF 159
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKK 77
++MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKY 157
Query: 78 NLQYYEISAKSNYNFEKP 95
+ Y+E SA + N EK
Sbjct: 158 GIPYFETSAATGQNVEKS 175
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKK 77
++MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKY 157
Query: 78 NLQYYEISAKSNYNFEKP 95
+ Y+E SA + N EK
Sbjct: 158 GIPYFETSAATGQNVEKS 175
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
AII+FDVT + +++ W ++L + N+ + L GNK D+ + R+V A+ T+ ++
Sbjct: 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146
Query: 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103
L + E SAK+ N ++ F +AR+L
Sbjct: 147 NGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKK 77
++MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K
Sbjct: 112 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY 171
Query: 78 NLQYYEISAKSNYNFEK 94
+ Y+E SA + N EK
Sbjct: 172 GIPYFETSAATGQNVEK 188
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFH 74
C ++ F V +++N+ W ++ E+ P V+ GNK D+K RQV ++
Sbjct: 86 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAW 145
Query: 75 RKKNLQ--YYEISAKSNYNFEKPFLYLARKL 103
K N Y+E SAK + N F R++
Sbjct: 146 CKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + +Y NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 83 HG--IIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE- 139
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 140 -FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + +Y NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 83 HG--IIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE- 139
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 140 -FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VT 72
HG I+++DVT+ ++ NV W ++ + C+++ +L GNK D R+V +
Sbjct: 81 GTHG--VIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK 138
Query: 73 FHRKKNLQYYEISAKSNYNFEKPF 96
F + +Q +E SAK N N E+ F
Sbjct: 139 FAGQMGIQLFETSAKENVNVEEMF 162
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L + NI I+L GNK D+++ R V + F K
Sbjct: 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 164 NGLSFIETSALDSTNVEAAF 183
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K
Sbjct: 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 164 NGLSFIETSALDSTNVEAAF 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K
Sbjct: 83 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 142
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 143 NGLSFIETSALDSTNVEAAF 162
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K
Sbjct: 95 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 154
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 155 NGLSFIETSALDSTNVEAAF 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
HG II++DVT R ++ NV W +++ R EN+ +L GNK D+ +++V VT
Sbjct: 83 HG--IIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV----VTSDE 136
Query: 76 KKNL------QYYEISAKSNYNFEKPFLYLARKL 103
+ L ++ E SAK+ YN E+ F +A ++
Sbjct: 137 GRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKK 77
++ FD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K
Sbjct: 98 LLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKY 157
Query: 78 NLQYYEISAKSNYNFEKP 95
+ Y+E SA + N EK
Sbjct: 158 GIPYFETSAATGQNVEKS 175
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 90 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 146
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 147 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L + NI I L GNK D+++ R V + F K
Sbjct: 86 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEK 145
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 146 NGLSFIETSALDSTNVEAAF 165
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKK 77
++ FD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K
Sbjct: 98 LLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKY 157
Query: 78 NLQYYEISAKSNYNFEKP 95
+ Y+E SA + N EK
Sbjct: 158 GIPYFETSAATGQNVEKS 175
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A++++D+ LTY+NV W ++L NI I L GNK D+++ R V + F K
Sbjct: 80 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 140 NGLSFIETSALDSTNVEAAF 159
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 90 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 146
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 147 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 80 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 136
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 137 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 73 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 129
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 130 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 99 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 155
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 156 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFH 74
G+ + +F +T ++ + + RV E N+P +L GNK D+++ RQV ++
Sbjct: 90 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149
Query: 75 RKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ N+ Y E SAK+ N +K F L R++
Sbjct: 150 AEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFH 74
G+ + +F +T ++ + + RV E N+P +L GNK D+++ RQV ++
Sbjct: 78 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 137
Query: 75 RKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ N+ Y E SAK+ N +K F L R++
Sbjct: 138 AEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFH 74
G+ + +F +T ++ + + RV E N+P +L GNK D+++ RQV ++
Sbjct: 78 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 137
Query: 75 RKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ N+ Y E SAK+ N +K F L R++
Sbjct: 138 AEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 80 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 136
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F+ +A ++
Sbjct: 137 -FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN 78
CAI++FD++ T TW L ++ N I+L NK+D QV +V + + N
Sbjct: 119 CAIVVFDISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNN 177
Query: 79 LQYYEISAKSNYNFEKPFLYLARKL 103
L + + SAK+ N + F LA ++
Sbjct: 178 LLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH 74
+GQ +++ +TA+ T+ ++ + RV E++P++L GNK D+++ +V K+ +
Sbjct: 74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 75 RKK---NLQYYEISAKSNYNFEKPFLYLARKL 103
+ N + E SAKS N + F L R++
Sbjct: 134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH---- 74
AI+++D+T R +++N W +D L +++ I L GNK D+ + ++VT+
Sbjct: 76 AAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD----LRKVTYEEGXQ 131
Query: 75 --RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
++ N ++E SAK+ +N + F A KL
Sbjct: 132 KAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFH 74
G+ + +F +T ++ + + RV E N+P +L GNK D+++ RQV ++
Sbjct: 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145
Query: 75 RKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ N+ Y E SAK+ N +K F L R++
Sbjct: 146 AEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH 74
+GQ +++ +TA+ T+ ++ + RV E++P++L GNK D+++ +V K+ +
Sbjct: 74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 75 RKK---NLQYYEISAKSNYNFEKPFLYLARKL 103
+ N + E SAKS N + F L R++
Sbjct: 134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 19 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVT 72
Q +++F T R +++ + +W + +IP L NK+D +KN + +
Sbjct: 79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG---- 134
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYLARK 102
++ L++Y S K + N + F YLA K
Sbjct: 135 LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFH 74
C ++ F V +++N+ W ++ E+ P V+ GNK+D+ RQV ++
Sbjct: 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 141
Query: 75 RKKNLQ--YYEISAKSNYNFEKPFLYLARKL 103
+ N Y+E SAK N F R++
Sbjct: 142 CRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFH 74
G+ + +F +T ++ + + RV E N+P +L GNK D+++ RQV ++
Sbjct: 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135
Query: 75 RKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
+ N+ Y E SAK+ N +K F L R++
Sbjct: 136 ADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFH 74
C ++ F V +++N+ W ++ E+ P V+ GNK+D+ RQV ++
Sbjct: 84 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 143
Query: 75 RKKNLQ--YYEISAKSNYNFEKPFLYLARKL 103
+ N Y+E SAK N F R++
Sbjct: 144 CRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 140
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 141 RSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQ-VTF 73
G+ +++F VT R +++ + + R + RV + P++L GNK D+ + RQV ++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLAR 101
R+ + Y E SAK N ++ F L R
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 140 RSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 140 RSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 140 RSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 141
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 142 RSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--F 73
HG II++DVT + ++ V W +++ R + + +L GNK D+K+++V V F
Sbjct: 95 HG--IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 152
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + E SA + N E FL +AR++
Sbjct: 153 ADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 12/91 (13%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 79
AI+ +D+T R ++ +VP W D+ + NI +L GNK D+ + ++V+ ++L
Sbjct: 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSL 160
Query: 80 -QYYEI------SAKSNYNFEKPFLYLARKL 103
++Y+I SAK + N E+ FL +A +L
Sbjct: 161 AEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFH 74
C ++ F V R +++N+ W ++ E+ P V+ GNKVD ++RQV ++
Sbjct: 82 CCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTW 141
Query: 75 RKKNLQ--YYEISAKSNYNFEKPFLYLARKL 103
+N Y E SAK + N F R++
Sbjct: 142 CMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QV 71
+GQ +++ +TA+ T+ ++ + RV +++P++L GNK D+++ +V K Q
Sbjct: 76 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQN 135
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ N + E SAKS N + F L R++
Sbjct: 136 LARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--F 73
HG II++DVT + ++ V W +++ R + + +L GNK D+K+++V V F
Sbjct: 82 HG--IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + E SA + N E FL +AR++
Sbjct: 140 ADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QV 71
+GQ +++ +TA+ T+ ++ + RV +++P++L GNK D+++ +V K Q
Sbjct: 74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ N + E SAKS N + F L R++
Sbjct: 134 LARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--F 73
HG II++DVT + ++ V W +++ R + + +L GNK D+K+++V V F
Sbjct: 82 HG--IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + E SA + N E FL +AR++
Sbjct: 140 ADANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 147
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKLAG 105
N+ + E SAK+ YN ++ F +A L G
Sbjct: 148 LNVMFIETSAKAGYNVKQLFRRVAAALPG 176
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T ++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE 148
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKLAG 105
N+ + E SAK+ YN ++ F +A L G
Sbjct: 149 LNVMFIETSAKAGYNVKQLFRRVAAALPG 177
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 17 HGQCAIIM-FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFH 74
G I++ +D+T ++ N+ W R++ ++ ++ GNK DV ++ +QV+
Sbjct: 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKE 134
Query: 75 RKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 116
R + L ++ E SAK+N N E F LAR + + ++ + A
Sbjct: 135 RGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQV-KAKQVTF 73
G +++F + R ++ V + RV + + P+VL GNK D+++ RQV +++ F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
++ Y+E SAK N ++ F L R +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 150
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKLAG 105
N+ + E SAK+ YN ++ F +A L G
Sbjct: 151 LNVMFIETSAKAGYNVKQLFRRVAAALPG 179
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GNK D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R+
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK-- 77
I+++D+T + T+ ++P W + + + E+ ++L GNK+D + +R++ +Q ++
Sbjct: 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT 162
Query: 78 NLQYYEISAKSNYNFEKPFLYL 99
+++ E SAK N+N ++ FL L
Sbjct: 163 GMRFCEASAKDNFNVDEIFLKL 184
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL- 79
++++D+T ++ N+ W R++ ++ ++ GNK DV ++ +QV+ R + L
Sbjct: 83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLA 138
Query: 80 -----QYYEISAKSNYNFEKPFLYLARKL 103
++ E SAK+N N E F LAR +
Sbjct: 139 LDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV +++P+VL GN+ D+ R V+++Q
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLA 134
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + Y E SAK+ E F L R++
Sbjct: 135 RSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 81 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 140
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKLAG 105
N+ + E SAK+ YN ++ F +A L G
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALPG 169
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 81 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 140
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKLAG 105
N+ + E SAK+ YN ++ F +A L G
Sbjct: 141 LNVMFIETSAKAGYNVKQLFRRVAAALPG 169
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV E++P+VL GNK D+ +R V KQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + + E SAK+ + F L R++
Sbjct: 136 RSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKN 78
++++DVT + ++ N+ W ++ + ++ ++L GNKVD + +V ++ ++
Sbjct: 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG 147
Query: 79 LQYYEISAKSNYNFEKPFLYLARKL 103
L + E SAK+ N + F +A++L
Sbjct: 148 LPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV E++P+VL GNK D+ +R V KQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + + E SAK+ + F L R++
Sbjct: 136 RSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV E++P+VL GNK D+ +R V KQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + + E SAK+ + F L R++
Sbjct: 136 RSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQV 71
HG I+++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+
Sbjct: 107 HG--IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE- 163
Query: 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
F + + E SAK+ N E+ F A ++
Sbjct: 164 -FADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV E++P+VL GNK D+ +R V KQ
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 135
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + + E SAK+ + F L R++
Sbjct: 136 RSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAKQVTF 73
G+ +++F +T ++ + + RV + IP+++ GNK D++ R QV ++
Sbjct: 79 GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 138
Query: 74 HRKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ +QY E SAK+ N +K F L R++
Sbjct: 139 KAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAKQVTF 73
G+ +++F +T ++ + + RV + IP+++ GNK D++ R QV ++
Sbjct: 75 GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 134
Query: 74 HRKK-NLQYYEISAKSNYNFEKPFLYLARKL 103
++ +QY E SAK+ N +K F L R++
Sbjct: 135 KAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQ 70
+ Q A++++DVT ++ W ++L + ++I I L GNK+D + + + +
Sbjct: 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG 134
Query: 71 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+K L ++E SAK+ N FL + K+
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FH 74
G+ + +F + +++++ + + RV E++P+VL GNK D+ +R V KQ
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 152
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
R + + E SAK+ + F L R++
Sbjct: 153 RSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 17 HGQCAIIM-FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TF 73
G II+ +DVT T+ N+ W + + + ++L GNK D++ R V A Q
Sbjct: 78 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 137
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLAR 101
++ + + E SAK++ N + F LA+
Sbjct: 138 AKELGIPFIESSAKNDDNVNEIFFTLAK 165
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV--KAKQVTFHRK 76
A++++D+T + +++N+ W ++L + NI I+L GNK D+K+ +V + +K
Sbjct: 83 GALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKK 142
Query: 77 KNLQYYEISAKSNYNFEKPF 96
+ L + E SA N E F
Sbjct: 143 EKLAFIETSALEATNVELAF 162
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 17 HGQCAIIM-FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TF 73
G II+ +DVT T+ N+ W + + + ++L GNK D++ R V A Q
Sbjct: 91 RGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 150
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLAR 101
++ + + E SAK++ N + F LA+
Sbjct: 151 AKELGIPFIESSAKNDDNVNEIFFTLAK 178
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVK-NRQVKAKQV-T 72
G I+++ +T+R + + + + +C + E+IPI+L GNK D +R+V++ +
Sbjct: 75 GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134
Query: 73 FHRKKNLQYYEISAKSNYNFEKPFLYL 99
R + E SAK N+N ++ F L
Sbjct: 135 LARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 22 IIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK 77
+++FD+T ++ NV W + EN IVLCGNK D+++ R VK ++ K
Sbjct: 98 LLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157
Query: 78 NLQYYEISAKSNYN 91
+ Y+E SA + N
Sbjct: 158 GIPYFETSAANGTN 171
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 17 HGQCAIIM-FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TF 73
G II+ +D+T T+ N+ W + + + ++L GNK D++ R V A Q
Sbjct: 74 RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL 133
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYLAR 101
++ + + E SAK++ N + F LA+
Sbjct: 134 AKELGIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK 77
A++++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+
Sbjct: 76 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE 135
Query: 78 -NLQYYEISAKSNYNFEKPFLYLARKL 103
N+ + E SAK+ YN ++ F +A L
Sbjct: 136 LNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNL 79
I+++DVT T+ N+ W + + + ++L GNK D + R V A Q ++ +
Sbjct: 80 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGI 139
Query: 80 QYYEISAKSNYNFEKPFLYLAR 101
+ E SAK++ N + F LA+
Sbjct: 140 PFIESSAKNDDNVNEIFFTLAK 161
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV-TF 73
G I++F VT++ + + + ++ + ++ E+IP++L GNK D R+V ++
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV 139
Query: 74 HRKKNLQYYEISAKSNYNFEKPFLYL 99
++ + E SAK NYN ++ F L
Sbjct: 140 AQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 60
PLS + ++LIC F + + +NV W ++ C+ +PI+L G KVD
Sbjct: 76 PLSYPDSNVVLIC----------FSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVD 125
Query: 61 VKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 101
++N RQ + VT +++ YYE SAK+ Y + F R
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNL 79
I+++D+T T+ N+ W + + + ++L GNK D + R V A Q ++ +
Sbjct: 80 ILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGI 139
Query: 80 QYYEISAKSNYNFEKPFLYLAR 101
+ E SAK++ N + F LA+
Sbjct: 140 PFIESSAKNDDNVNEIFFTLAK 161
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TF 73
G +I++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 74 HRKKNLQYYEISAKS-NYNFEKPFLYLAR 101
K N+ Y E SAK N +K F L R
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTF 73
G +I++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 74 HRKKNLQYYEISAKS-NYNFEKPFLYLAR 101
K N+ Y E SAK N +K F L R
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTF 73
G +I++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 74 HRKKNLQYYEISAKS-NYNFEKPFLYLAR 101
K N+ Y E SAK N +K F L R
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK 76
I+M+D+T ++ V W + +N ++L GNK D+++ +V + +Q+ H
Sbjct: 82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL- 140
Query: 77 KNLQYYEISAKSNYNFEKPF 96
+++E SAK N N ++ F
Sbjct: 141 -GFEFFEASAKDNINVKQTF 159
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 78
A++++D+T +++ W D+ ++ I+L GNK D+ +++ + R K
Sbjct: 77 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKE 136
Query: 79 LQ--YYEISAKSNYNFEKPFLYLARKL 103
L + E SAK+ YN ++ F +A L
Sbjct: 137 LSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH 74
G+ + +F + ++ ++ + + RV +++P+VL GNK D+ R V KQ
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152
Query: 75 RKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + + E SAK+ E F L R++
Sbjct: 153 KSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTF 73
G +I++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 74 HRKKNLQYYEISAKS-NYNFEKPFLYLAR 101
K N+ Y E SAK N +K F L R
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ----VTFHR 75
++++DVT ++ N+ W D+ E +PI+L GNK D+++ Q F
Sbjct: 105 LLLYDVTCEKSFLNIREWV-DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE 163
Query: 76 KKNLQYY----EISAKSNYNFEKPFLYLARKL 103
K + Y E SAK N + L+LAR++
Sbjct: 164 KLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV---- 66
C G +I++ +T R +++ L R E+IPI+L GNK D V+ R+V
Sbjct: 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSE 136
Query: 67 -KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+A V F K + E SA +N ++ F + R++
Sbjct: 137 GRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK 77
A+I++D++ +Y+N W +L +N+ + L GNK D+ + R V ++ TF ++
Sbjct: 89 ALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN 148
Query: 78 NLQYYEISAKSNYNFEKPFLYL 99
L + E SA ++ N +K F L
Sbjct: 149 QLLFTETSALNSENVDKAFEEL 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A+++FD+T TY V W ++L E I ++L GNK D+ R+V ++ F
Sbjct: 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 160 NGLLFLETSALDSTNVELAF 179
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + A+++ +++ ++ Y E SAK+ + F R
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A+++FD+T TY V W ++L E I ++L GNK D+ R+V ++ F
Sbjct: 85 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 144
Query: 77 KNLQYYEISAKSNYNFEKPF 96
L + E SA + N E F
Sbjct: 145 NGLLFLETSALDSTNVELAF 164
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAK 69
G +I++ +T R +++ L R E+IPI+L GNK D V+ R+V +A
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 70 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
V F + ++ E SA +N ++ F + R++
Sbjct: 141 AVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK 76
I+ +D+T ++ V W + +N ++L GNK D ++ +V + +Q+ H
Sbjct: 85 ILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHL- 143
Query: 77 KNLQYYEISAKSNYNFEKPFLYL 99
+++E SAK N N ++ F L
Sbjct: 144 -GFEFFEASAKDNINVKQTFERL 165
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNKVDV-KNRQVKAKQVT 72
C ++++DVT +++N+ +W RD V N+ P V+ GNK+D +++++ +++
Sbjct: 84 CCVLVYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 73 FHRKKNLQ---YYEISAKSNYNFEKPFLYLAR 101
K+L + SAK+ N + F +AR
Sbjct: 143 QELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 74 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 75 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK 76
A+I++D+T + ++ + W ++L ENI + + GNK D+ + R+V K +
Sbjct: 98 AAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157
Query: 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103
E SAK+ N E+ F ++R++
Sbjct: 158 IGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 73 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 69 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 72 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 69 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 118
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV---- 66
C G +I++ VT + +++ L R +++PI+L GNK D V++R+V
Sbjct: 74 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 133
Query: 67 -KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+A V F + ++ E SA ++N + F + R++
Sbjct: 134 GRACAVVF----DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV---- 66
C G +I++ VT + +++ L R +++PI+L GNK D V++R+V
Sbjct: 74 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 133
Query: 67 -KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+A V F + ++ E SA ++N + F + R++
Sbjct: 134 GRACAVVF----DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 73 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 72 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRK 76
AII++D+T T+ + W R+L + +I + + GNK D+ + R+V + +
Sbjct: 81 AAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS 140
Query: 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + E SAK+ N + F+ ++R++
Sbjct: 141 IHAIFVETSAKNAININELFIEISRRI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 20 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRK 76
AII++D+T T+ + W R+L + +I + + GNK D+ + R+V + +
Sbjct: 80 AAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS 139
Query: 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103
+ + E SAK+ N + F+ ++R++
Sbjct: 140 IHAIFVETSAKNAININELFIEISRRI 166
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV---- 66
C G +I++ VT + +++ L R +++PI+L GNK D V++R+V
Sbjct: 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 128
Query: 67 -KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103
+A V F + ++ E SA ++N + F + R++
Sbjct: 129 GRACAVVF----DCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 73 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 74 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 101
++N + +++ +++ ++ Y E SAK+ + F R
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV 71
C G +I++ +T R +++ L R E+IPI+L GNK D+ V+ ++V
Sbjct: 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL----VRCREV 163
Query: 72 TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKL 103
+ + + ++ E SA +N ++ F + R++
Sbjct: 164 SVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQV 71
++ F + ++ +Y+NV W +L R N+PIVL G K+D+++ + + + Q
Sbjct: 85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQG 144
Query: 72 TFHRKK--NLQYYEISAKSNYNFEKPF 96
RK+ Y E S+K+ N + F
Sbjct: 145 EELRKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV 71
C G +I+F VT R ++ VP L R ++P++L GNK D+ ++++V
Sbjct: 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREV 148
Query: 72 TFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 103
+ ++L ++ E SA ++N + F R++
Sbjct: 149 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV 71
C G +I+F VT R ++ VP L R ++P++L GNK D+ ++++V
Sbjct: 82 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREV 137
Query: 72 TFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 103
+ ++L ++ E SA ++N + F R++
Sbjct: 138 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV 71
C G +I++ +T R +++ L R E+IPI+L GNK D+ V+ ++V
Sbjct: 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL----VRCREV 132
Query: 72 TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKL 103
+ + + ++ E SA +N ++ F + R++
Sbjct: 133 SVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV 71
C G +I+F VT R ++ VP L R ++P++L GNK D+ ++++V
Sbjct: 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREV 127
Query: 72 TFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 103
+ ++L ++ E SA ++N + F R++
Sbjct: 128 SLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT 72
++ FDVT+ ++ N+ W+ ++ C+ +PI++ G K D++ R+ + VT
Sbjct: 110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169
Query: 73 FHRKKNL-------QYYEISAKSNYNFEKPF 96
+HR + + Y E SA+ + N F
Sbjct: 170 YHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 26/116 (22%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 91 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 61 VKNRQ------VKAKQVTFHRKKN---------LQYYEISAKSNYNFEKPFLYLAR 101
++ + K KQ ++ Y E SAK+ + F R
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 19 QCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKAKQV---- 71
+ ++D+T ++ ++P W + C+ + +IP +L GNK D+++ A QV
Sbjct: 95 HAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRS----AIQVPTDL 149
Query: 72 --TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 103
F ++ +E SAK+ N + E F+ LA KL
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ C N+PI+L GNK D
Sbjct: 71 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 61 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 99
++ + +++ +++ ++ E + N F YL
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEE--GRDMANRISAFGYL 157
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 16 IHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVKN-RQVK-A 68
I+G Q ++++D+T +++N+ W+ + +V E + L GNK+D+++ R +K
Sbjct: 77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE 136
Query: 69 KQVTFHRKKNLQYYEISAKSN 89
K + F ++ + +SAK+
Sbjct: 137 KHLRFCQENGFSSHFVSAKTG 157
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 22 IIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL- 79
++M+D+ + ++ V W + +N ++L GNK D+++ +V + +L
Sbjct: 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG 158
Query: 80 -QYYEISAKSNYNFEKPF 96
+++E SAK N N ++ F
Sbjct: 159 FEFFEASAKENINVKQVF 176
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 21 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK 77
A+I++D++ +Y+N W +L +N+ + L GNK D+ + R V + F +
Sbjct: 86 ALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMEN 145
Query: 78 NLQYYEISAKSNYNFEKPF 96
+ + E SA ++ N +K F
Sbjct: 146 QMLFTETSALNSDNVDKAF 164
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 61
+GQ I+++ + + +++++ + RV E +P++L GNKVD+
Sbjct: 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFH 74
++ F + ++ +Y+N+ W +L IPIVL G K+D+++ + A +T
Sbjct: 82 LLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTA 141
Query: 75 RKKNL-------QYYEISAKSNYNFEKPF 96
+ + L +Y E S+K+ N + F
Sbjct: 142 QGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 22 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFH 74
I+ F + ++ +Y+NV W +L +PIVL G K+D+++ + A +T
Sbjct: 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTV 143
Query: 75 RKKNLQ-------YYEISAKSNYNFEKPF 96
+ + L+ Y E S+KS N + F
Sbjct: 144 QGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 21 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
++I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 80 SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 21 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
++I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 139
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 21 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
++I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 78 SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 21 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
++I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 78 SLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 14/89 (15%)
Query: 22 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFH 74
I+ F + ++ +Y+NV W +L +PI+L G K+D+++ + A +T +
Sbjct: 82 ILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTN 141
Query: 75 RKKNLQ-------YYEISAKSNYNFEKPF 96
+ + L+ Y E S+K+ N + F
Sbjct: 142 QGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 86 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 142
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 138
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F V + + +N+P W ++ C N+PI+L NK D
Sbjct: 91 PLSYPDTDVILMC----------FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140
Query: 61 VKNRQ 65
+++ +
Sbjct: 141 LRSDE 145
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 89 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 145
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 98 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 154
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 100 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 60
PLS + +IL+C F + + + +N+P W ++ N+PI+L GNK D
Sbjct: 91 PLSYPDTDVILMC----------FSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKD 140
Query: 61 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 99
++ + +++ +++ ++ E + N F YL
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEE--GRDMANRISAFGYL 177
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 72
+I F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRK 76
+ ++D T ++ ++P W + C+ + +IP +L GNK D+++ QV F
Sbjct: 107 VFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT 165
Query: 77 KNLQYYEISAKS---NYNFEKPFLYLARKL 103
+ +E SAK+ N + E F LA KL
Sbjct: 166 HSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 70
C G +I++ + R ++++ L R +++PI+L GNK D+ R+V ++
Sbjct: 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE 133
Query: 71 -----VTFHRKKNLQYYEISAKSNYNFEKPF 96
V F + ++ E SA +N + F
Sbjct: 134 GRACAVVF----DCKFIETSATLQHNVAELF 160
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 63
+I F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 79 LICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 63
+I F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 86 LICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 63
+I F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 85 LICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 18 GQCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 75
G+ ++++D+T R +++ V D + +N+ ++L GNK D+ + ++QV+
Sbjct: 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH----SRQVSTEE 154
Query: 76 KKNL------QYYEISA-KSNYNFEKPFLYLARKL 103
+ L +YE SA N + F L R++
Sbjct: 155 GEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 60
PLS + LIC F + + ++ +V W+ ++ C N PI+L G K+D
Sbjct: 221 PLSYPQTDVFLIC----------FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 61 VKN-----RQVKAKQVT 72
+++ ++K K++T
Sbjct: 271 LRDDKDTIEKLKEKKLT 287
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 60
PLS + LIC F + + ++ +V W+ ++ C N PI+L G K+D
Sbjct: 221 PLSYPQTDVFLIC----------FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 61 VKN-----RQVKAKQVT 72
+++ ++K K++T
Sbjct: 271 LRDDKDTIEKLKEKKLT 287
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT 72
+I F + + +++NV W+ ++ C + PI+L G K+D+++ R K +T
Sbjct: 80 LICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPIT 139
Query: 73 FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAG 105
+ + +++Y E SA + + F R + G
Sbjct: 140 YPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT 72
+I F + + +++NV W+ ++ C + PI+L G K+D+++ R K +T
Sbjct: 80 LICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPIT 139
Query: 73 FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAG 105
+ + +++Y E SA + + F R + G
Sbjct: 140 YPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 60
PLS + LIC F + + ++ +V W+ ++ C N PI+L G K+D
Sbjct: 221 PLSYPQTDVFLIC----------FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 61 VKN-----RQVKAKQVT 72
+++ ++K K++T
Sbjct: 271 LRDDKDTIEKLKEKKLT 287
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-- 77
I+++ VT+ +++ + H L + IPI+L GNK D+ +V +++ K
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKAL 137
Query: 78 ----NLQYYEISAKSN 89
N + E SAK N
Sbjct: 138 AESWNAAFLESSAKEN 153
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-- 77
I+++ VT+ +++ + H L + IPI+L GNK D+ +V +++ K
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKAL 137
Query: 78 ----NLQYYEISAKSN 89
N + E SAK N
Sbjct: 138 AESWNAAFLESSAKEN 153
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-- 77
I+++ VT+ +++ + H L + IPI+L GNK D+ +V +++ K
Sbjct: 77 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKAL 132
Query: 78 ----NLQYYEISAKSN 89
N + E SAK N
Sbjct: 133 AESWNAAFLESSAKEN 148
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 22 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-- 77
I+++ VT+ +++ + H L + IPI+L GNK D+ +V +++ K
Sbjct: 80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----ISYEEGKAL 135
Query: 78 ----NLQYYEISAKSN 89
N + E SAK N
Sbjct: 136 AESWNAAFLESSAKEN 151
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 63
+I F + + +++NV W+ ++ C + PI+L G K+D+++
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 51 PIVLCGNKVDVK-NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 101
PIV+ K D R ++ KKNLQ E SA+SN N + F L +
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 80
+I FD++ T +V W ++ C N ++L G K D++ +++ HR+ +
Sbjct: 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 163
Query: 81 Y 81
Y
Sbjct: 164 Y 164
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 80
+I FD++ T +V W ++ C N ++L G K D++ +++ HR+ +
Sbjct: 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 142
Query: 81 Y 81
Y
Sbjct: 143 Y 143
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 22 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 80
+I FD++ T +V W ++ C N ++L G K D++ +++ HR+ +
Sbjct: 99 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 158
Query: 81 Y 81
Y
Sbjct: 159 Y 159
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 VCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 95
VC I +L N+VD + +QV Q +F+R + + K +NF+ P
Sbjct: 38 VCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 88
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 VCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 95
VCE I +L N+V+ + R+V Q F++ + + K YNF+ P
Sbjct: 41 VCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHP 91
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 46 VCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 95
VC I +L N+VD + +QV Q +F+R + + K +NF+ P
Sbjct: 36 VCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHP 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,184,085
Number of Sequences: 62578
Number of extensions: 143166
Number of successful extensions: 717
Number of sequences better than 100.0: 259
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 259
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)