Query 031782
Match_columns 153
No_of_seqs 146 out of 1220
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 99.9 3.6E-24 7.8E-29 152.8 11.6 106 9-114 73-182 (205)
2 KOG0078 GTP-binding protein SE 99.9 9E-24 2E-28 152.3 11.4 102 9-110 76-180 (207)
3 smart00176 RAN Ran (Ras-relate 99.9 9.4E-23 2E-27 149.3 15.8 141 8-148 58-198 (200)
4 PLN03071 GTP-binding nuclear p 99.9 2E-22 4.2E-27 149.4 16.2 143 8-150 76-218 (219)
5 KOG0098 GTPase Rab2, small G p 99.9 1.6E-22 3.5E-27 143.2 8.2 100 8-107 69-171 (216)
6 KOG0092 GTPase Rab5/YPT51 and 99.9 2.7E-22 5.9E-27 142.7 9.2 102 8-109 68-172 (200)
7 KOG0093 GTPase Rab3, small G p 99.9 2.2E-22 4.8E-27 137.8 7.9 104 7-110 83-189 (193)
8 cd04121 Rab40 Rab40 subfamily. 99.9 3E-21 6.4E-26 140.2 13.2 101 8-108 69-171 (189)
9 cd04120 Rab12 Rab12 subfamily. 99.8 2.2E-20 4.7E-25 137.0 13.0 99 8-106 63-165 (202)
10 KOG0080 GTPase Rab18, small G 99.8 5.2E-21 1.1E-25 132.8 8.1 103 9-111 75-181 (209)
11 cd04133 Rop_like Rop subfamily 99.8 2.1E-20 4.6E-25 134.3 11.5 96 9-104 64-173 (176)
12 KOG0087 GTPase Rab11/YPT3, sma 99.8 6.7E-21 1.5E-25 137.3 8.6 99 9-107 78-179 (222)
13 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 3E-20 6.6E-25 134.1 11.6 98 8-105 67-181 (182)
14 KOG0088 GTPase Rab21, small G 99.8 7.1E-21 1.5E-25 131.9 7.9 110 9-118 77-189 (218)
15 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.8E-20 4E-25 133.7 10.1 100 9-108 86-189 (221)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 5.5E-20 1.2E-24 137.4 12.8 99 8-106 75-190 (232)
17 KOG0079 GTP-binding protein H- 99.8 1.5E-20 3.3E-25 128.9 8.9 100 8-107 71-172 (198)
18 cd01873 RhoBTB RhoBTB subfamil 99.8 2.6E-20 5.5E-25 135.9 10.6 94 9-102 79-194 (195)
19 KOG0091 GTPase Rab39, small G 99.8 4E-20 8.7E-25 128.7 10.4 100 8-107 72-176 (213)
20 PTZ00099 rab6; Provisional 99.8 1.9E-19 4.1E-24 129.4 13.2 101 9-109 44-147 (176)
21 cd04131 Rnd Rnd subfamily. Th 99.8 9.5E-20 2.1E-24 131.1 11.1 97 8-104 63-176 (178)
22 KOG0394 Ras-related GTPase [Ge 99.8 6.1E-20 1.3E-24 129.9 9.7 99 10-108 74-182 (210)
23 PTZ00132 GTP-binding nuclear p 99.8 1.9E-18 4.1E-23 127.4 17.2 142 9-150 73-214 (215)
24 cd01875 RhoG RhoG subfamily. 99.8 2.4E-19 5.2E-24 130.2 12.0 98 8-105 65-178 (191)
25 KOG0086 GTPase Rab4, small G p 99.8 6.1E-20 1.3E-24 126.7 8.0 118 9-127 73-193 (214)
26 KOG0083 GTPase Rab26/Rab37, sm 99.8 3.6E-20 7.9E-25 125.2 6.6 99 9-107 62-163 (192)
27 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.3E-20 9.2E-25 131.2 7.0 142 8-149 73-214 (216)
28 cd00877 Ran Ran (Ras-related n 99.8 5.2E-19 1.1E-23 125.6 12.3 99 9-107 64-162 (166)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.8E-19 8.3E-24 127.0 11.7 99 8-106 64-166 (172)
30 cd04122 Rab14 Rab14 subfamily. 99.8 1.4E-18 3.1E-23 122.8 12.4 98 8-105 65-165 (166)
31 KOG0081 GTPase Rab27, small G 99.8 4.8E-19 1E-23 122.9 9.2 99 9-107 82-184 (219)
32 cd04126 Rab20 Rab20 subfamily. 99.8 3.2E-18 6.9E-23 127.0 12.1 98 8-105 58-191 (220)
33 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.3E-18 5E-23 123.4 10.9 95 9-103 64-174 (175)
34 cd04103 Centaurin_gamma Centau 99.8 2.1E-18 4.5E-23 121.8 10.4 91 12-102 60-157 (158)
35 cd04117 Rab15 Rab15 subfamily. 99.8 3.9E-18 8.5E-23 120.3 11.6 94 9-102 64-160 (161)
36 cd04127 Rab27A Rab27a subfamil 99.8 5.2E-18 1.1E-22 121.2 12.0 98 8-105 77-178 (180)
37 cd04134 Rho3 Rho3 subfamily. 99.8 4.6E-18 1E-22 123.1 11.8 98 9-106 63-176 (189)
38 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 7.4E-18 1.6E-22 125.2 13.0 101 8-108 63-180 (222)
39 PF00071 Ras: Ras family; Int 99.8 6.6E-18 1.4E-22 118.6 12.1 97 8-104 62-161 (162)
40 cd01871 Rac1_like Rac1-like su 99.8 3.4E-18 7.5E-23 122.4 10.8 95 8-102 63-173 (174)
41 cd04128 Spg1 Spg1p. Spg1p (se 99.8 6.5E-18 1.4E-22 121.9 12.1 98 8-106 63-168 (182)
42 cd04110 Rab35 Rab35 subfamily. 99.8 7.7E-18 1.7E-22 122.9 12.5 104 8-111 69-174 (199)
43 cd04144 Ras2 Ras2 subfamily. 99.8 1.1E-17 2.4E-22 121.1 13.0 102 8-109 61-168 (190)
44 KOG0395 Ras-related GTPase [Ge 99.8 1E-17 2.2E-22 122.3 12.5 99 7-105 64-166 (196)
45 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 9.1E-18 2E-22 122.6 12.3 100 8-107 64-171 (201)
46 cd04109 Rab28 Rab28 subfamily. 99.8 1.3E-17 2.7E-22 123.2 12.3 99 8-106 64-168 (215)
47 cd01865 Rab3 Rab3 subfamily. 99.8 1.8E-17 3.9E-22 117.2 12.5 98 8-105 64-164 (165)
48 KOG0095 GTPase Rab30, small G 99.8 2.1E-18 4.5E-23 118.7 7.1 98 8-105 70-170 (213)
49 cd04175 Rap1 Rap1 subgroup. T 99.8 1.8E-17 3.8E-22 116.8 12.1 97 8-104 63-163 (164)
50 cd01867 Rab8_Rab10_Rab13_like 99.8 2.3E-17 5E-22 116.8 12.7 98 8-105 66-166 (167)
51 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.1E-17 6.6E-22 115.8 12.4 97 8-104 65-164 (166)
52 smart00174 RHO Rho (Ras homolo 99.7 1.7E-17 3.8E-22 117.8 11.2 98 8-105 60-173 (174)
53 cd04136 Rap_like Rap-like subf 99.7 2.4E-17 5.1E-22 115.7 11.6 96 8-103 63-162 (163)
54 cd04125 RabA_like RabA-like su 99.7 4E-17 8.6E-22 117.8 12.8 99 9-107 64-165 (188)
55 PTZ00369 Ras-like protein; Pro 99.7 3.1E-17 6.6E-22 118.7 11.7 98 9-106 68-169 (189)
56 cd04119 RJL RJL (RabJ-Like) su 99.7 4.3E-17 9.4E-22 114.5 12.1 97 8-104 63-167 (168)
57 cd04124 RabL2 RabL2 subfamily. 99.7 3.8E-17 8.3E-22 115.2 11.6 97 8-105 63-159 (161)
58 cd04111 Rab39 Rab39 subfamily. 99.7 5.4E-17 1.2E-21 119.6 12.6 100 8-107 66-169 (211)
59 cd04140 ARHI_like ARHI subfami 99.7 4.4E-17 9.6E-22 115.2 11.7 95 8-102 63-163 (165)
60 cd04106 Rab23_lke Rab23-like s 99.7 5E-17 1.1E-21 114.0 11.6 95 8-102 65-161 (162)
61 cd04138 H_N_K_Ras_like H-Ras/N 99.7 6.6E-17 1.4E-21 112.9 12.2 97 7-103 62-161 (162)
62 cd04176 Rap2 Rap2 subgroup. T 99.7 5.6E-17 1.2E-21 114.1 11.6 96 8-103 63-162 (163)
63 KOG0097 GTPase Rab14, small G 99.7 1.8E-17 3.9E-22 113.3 8.6 99 9-107 75-176 (215)
64 cd04142 RRP22 RRP22 subfamily. 99.7 9.9E-17 2.1E-21 117.2 12.8 97 11-107 74-177 (198)
65 cd04146 RERG_RasL11_like RERG/ 99.7 7E-17 1.5E-21 114.0 11.6 96 9-104 63-164 (165)
66 cd04132 Rho4_like Rho4-like su 99.7 5.5E-17 1.2E-21 116.8 11.2 100 8-107 63-170 (187)
67 cd04112 Rab26 Rab26 subfamily. 99.7 1.1E-16 2.4E-21 116.0 12.8 100 8-107 64-166 (191)
68 cd01868 Rab11_like Rab11-like. 99.7 8.6E-17 1.9E-21 113.3 12.0 96 8-103 66-164 (165)
69 cd04148 RGK RGK subfamily. Th 99.7 2.2E-16 4.8E-21 117.2 14.0 101 10-110 64-169 (221)
70 PLN03110 Rab GTPase; Provision 99.7 1.2E-16 2.6E-21 118.2 12.4 100 8-107 75-177 (216)
71 cd01866 Rab2 Rab2 subfamily. 99.7 1.9E-16 4.2E-21 112.3 12.7 98 8-105 67-167 (168)
72 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.2E-16 2.6E-21 113.9 11.6 98 8-105 63-166 (170)
73 cd04101 RabL4 RabL4 (Rab-like4 99.7 1.8E-16 3.8E-21 111.5 12.3 96 8-103 66-163 (164)
74 cd04116 Rab9 Rab9 subfamily. 99.7 1.3E-16 2.8E-21 113.0 11.6 96 8-103 68-170 (170)
75 PLN03108 Rab family protein; P 99.7 1.7E-16 3.6E-21 116.9 12.6 100 8-107 69-171 (210)
76 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.5E-16 3.4E-21 113.0 11.8 96 8-103 66-168 (170)
77 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.9E-16 4.1E-21 111.1 12.1 96 8-103 64-163 (164)
78 smart00173 RAS Ras subfamily o 99.7 2.6E-16 5.7E-21 110.6 12.3 96 9-104 63-162 (164)
79 cd04113 Rab4 Rab4 subfamily. 99.7 2.9E-16 6.3E-21 110.2 11.5 96 8-103 63-161 (161)
80 cd01864 Rab19 Rab19 subfamily. 99.7 4.4E-16 9.6E-21 109.9 12.2 95 8-102 66-164 (165)
81 cd04118 Rab24 Rab24 subfamily. 99.7 5.3E-16 1.1E-20 112.2 12.7 100 8-107 64-169 (193)
82 KOG4252 GTP-binding protein [S 99.7 2.9E-17 6.3E-22 116.2 5.6 99 8-106 83-183 (246)
83 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2.8E-16 6E-21 111.9 10.3 93 9-101 63-171 (173)
84 smart00175 RAB Rab subfamily o 99.7 7.2E-16 1.6E-20 108.1 12.3 98 8-105 63-163 (164)
85 cd04158 ARD1 ARD1 subfamily. 99.7 5.2E-16 1.1E-20 110.3 10.3 100 8-107 57-164 (169)
86 PLN00223 ADP-ribosylation fact 99.7 5.8E-16 1.3E-20 111.5 10.4 96 8-106 75-180 (181)
87 cd01863 Rab18 Rab18 subfamily. 99.7 1.4E-15 3.1E-20 106.6 11.9 95 8-102 63-160 (161)
88 cd04129 Rho2 Rho2 subfamily. 99.7 1.2E-15 2.6E-20 110.2 11.6 98 10-107 65-176 (187)
89 cd04135 Tc10 TC10 subfamily. 99.7 1.2E-15 2.6E-20 108.4 10.7 95 9-103 63-173 (174)
90 cd04149 Arf6 Arf6 subfamily. 99.7 6.5E-16 1.4E-20 109.9 9.3 93 9-101 68-167 (168)
91 cd04177 RSR1 RSR1 subgroup. R 99.7 2.6E-15 5.7E-20 106.3 12.0 97 8-104 63-164 (168)
92 cd04123 Rab21 Rab21 subfamily. 99.7 2.8E-15 6E-20 104.6 12.0 95 9-103 64-161 (162)
93 cd01892 Miro2 Miro2 subfamily. 99.7 1.2E-15 2.7E-20 108.5 10.3 95 9-104 69-166 (169)
94 PLN03118 Rab family protein; P 99.6 4.2E-15 9.2E-20 109.3 13.0 100 8-107 76-180 (211)
95 cd01861 Rab6 Rab6 subfamily. 99.6 3.2E-15 6.9E-20 104.7 11.7 95 8-102 63-160 (161)
96 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.3E-15 2.9E-20 107.3 9.3 93 9-101 59-158 (159)
97 cd04143 Rhes_like Rhes_like su 99.6 3.2E-15 6.9E-20 112.8 11.9 96 9-104 63-171 (247)
98 cd01862 Rab7 Rab7 subfamily. 99.6 5.5E-15 1.2E-19 104.4 12.4 99 8-106 63-169 (172)
99 cd01860 Rab5_related Rab5-rela 99.6 6E-15 1.3E-19 103.5 12.2 95 9-103 65-162 (163)
100 smart00177 ARF ARF-like small 99.6 3.2E-15 7E-20 106.9 10.6 95 9-103 72-173 (175)
101 cd04139 RalA_RalB RalA/RalB su 99.6 1.1E-14 2.3E-19 102.0 12.6 97 8-104 62-162 (164)
102 cd04114 Rab30 Rab30 subfamily. 99.6 8.6E-15 1.9E-19 103.4 12.1 95 9-103 71-168 (169)
103 cd01870 RhoA_like RhoA-like su 99.6 7.6E-15 1.6E-19 104.3 10.9 95 9-103 64-174 (175)
104 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.5E-15 3.3E-20 107.5 6.9 94 8-101 58-163 (164)
105 cd01893 Miro1 Miro1 subfamily. 99.6 1.2E-14 2.5E-19 102.9 11.4 97 9-105 62-165 (166)
106 cd04147 Ras_dva Ras-dva subfam 99.6 6.3E-15 1.4E-19 107.4 10.2 97 8-104 61-163 (198)
107 PTZ00133 ADP-ribosylation fact 99.6 7.5E-15 1.6E-19 105.8 10.5 98 9-106 76-180 (182)
108 cd04154 Arl2 Arl2 subfamily. 99.6 5.6E-15 1.2E-19 105.2 9.6 93 9-101 73-172 (173)
109 cd00876 Ras Ras family. The R 99.6 3.8E-14 8.2E-19 98.7 11.8 96 8-103 61-160 (160)
110 KOG0393 Ras-related small GTPa 99.6 1.3E-14 2.9E-19 105.0 9.0 99 10-108 69-183 (198)
111 cd04157 Arl6 Arl6 subfamily. 99.6 1.8E-14 3.8E-19 100.9 9.2 94 8-101 59-161 (162)
112 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.1E-14 6.6E-19 102.6 10.2 98 8-105 66-171 (183)
113 cd00154 Rab Rab family. Rab G 99.6 1E-13 2.2E-18 95.9 11.6 93 8-100 63-158 (159)
114 cd04137 RheB Rheb (Ras Homolog 99.6 1.2E-13 2.6E-18 98.7 12.2 99 9-107 64-166 (180)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 3.8E-14 8.2E-19 101.2 9.3 93 9-101 74-173 (174)
116 TIGR00157 ribosome small subun 99.5 1.8E-14 3.8E-19 108.6 8.0 92 8-101 27-120 (245)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.5 2.2E-14 4.7E-19 100.4 7.9 93 9-101 59-159 (160)
118 cd00879 Sar1 Sar1 subfamily. 99.5 5.4E-14 1.2E-18 101.4 9.5 93 9-102 78-189 (190)
119 cd00157 Rho Rho (Ras homology) 99.5 7.6E-14 1.7E-18 98.5 9.8 93 9-101 63-170 (171)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.2E-13 2.5E-18 97.4 9.4 94 8-101 64-166 (167)
121 cd01890 LepA LepA subfamily. 99.5 1.7E-13 3.8E-18 97.6 10.4 93 8-103 81-176 (179)
122 cd04161 Arl2l1_Arl13_like Arl2 99.5 1.2E-13 2.5E-18 98.1 9.1 94 8-101 57-166 (167)
123 TIGR02528 EutP ethanolamine ut 99.5 1.8E-13 3.8E-18 94.3 8.6 81 14-100 59-141 (142)
124 cd04151 Arl1 Arl1 subfamily. 99.5 3.5E-13 7.5E-18 94.4 9.9 93 9-101 58-157 (158)
125 cd01898 Obg Obg subfamily. Th 99.5 3.8E-13 8.2E-18 94.9 10.0 93 10-102 68-169 (170)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.5 6.4E-13 1.4E-17 92.8 10.6 94 8-101 57-157 (158)
127 PF00025 Arf: ADP-ribosylation 99.5 9.3E-13 2E-17 94.4 11.1 97 7-103 71-175 (175)
128 cd01897 NOG NOG1 is a nucleola 99.5 5.4E-13 1.2E-17 94.0 9.7 87 17-103 79-167 (168)
129 cd04102 RabL3 RabL3 (Rab-like3 99.5 5.5E-13 1.2E-17 97.8 9.5 83 8-90 68-176 (202)
130 PRK12299 obgE GTPase CgtA; Rev 99.4 9.7E-13 2.1E-17 103.2 10.2 92 14-105 233-329 (335)
131 smart00178 SAR Sar1p-like memb 99.4 1.4E-12 2.9E-17 94.1 9.6 94 9-102 76-183 (184)
132 KOG3883 Ras family small GTPas 99.4 3.6E-12 7.8E-17 88.3 10.1 104 7-110 74-181 (198)
133 TIGR02729 Obg_CgtA Obg family 99.4 6.7E-12 1.4E-16 98.4 10.2 95 9-103 224-328 (329)
134 cd04155 Arl3 Arl3 subfamily. 99.4 7.2E-12 1.6E-16 88.7 9.4 90 9-101 73-172 (173)
135 cd04159 Arl10_like Arl10-like 99.3 1.3E-11 2.7E-16 85.4 10.0 94 8-101 58-158 (159)
136 cd01878 HflX HflX subfamily. 99.3 1.1E-11 2.4E-16 90.4 9.3 87 14-103 117-204 (204)
137 cd01879 FeoB Ferrous iron tran 99.3 4.1E-11 8.8E-16 83.3 10.2 90 9-103 64-156 (158)
138 TIGR00436 era GTP-binding prot 99.3 3.7E-11 8.1E-16 91.7 10.2 97 6-106 68-166 (270)
139 KOG0073 GTP-binding ADP-ribosy 99.3 4.9E-11 1.1E-15 83.4 9.6 99 7-105 73-179 (185)
140 PRK15467 ethanolamine utilizat 99.3 2.3E-11 4.9E-16 85.8 8.1 87 13-105 60-148 (158)
141 PLN00023 GTP-binding protein; 99.3 3.6E-11 7.7E-16 93.5 9.2 72 8-79 97-189 (334)
142 PRK03003 GTP-binding protein D 99.2 1.2E-10 2.6E-15 95.3 12.1 92 11-105 287-383 (472)
143 cd01881 Obg_like The Obg-like 99.2 4.5E-11 9.8E-16 84.5 8.1 91 12-102 69-175 (176)
144 PRK12297 obgE GTPase CgtA; Rev 99.2 1.5E-10 3.2E-15 93.4 11.5 97 9-107 225-330 (424)
145 TIGR03156 GTP_HflX GTP-binding 99.2 1.5E-10 3.3E-15 91.5 10.6 87 12-102 263-350 (351)
146 PRK15494 era GTPase Era; Provi 99.2 1.2E-10 2.6E-15 91.6 9.8 96 6-106 120-218 (339)
147 PRK12289 GTPase RsgA; Reviewed 99.2 6.6E-11 1.4E-15 93.4 8.3 92 9-102 81-173 (352)
148 cd01855 YqeH YqeH. YqeH is an 99.2 1.8E-10 3.9E-15 83.4 9.4 92 8-104 25-125 (190)
149 cd01859 MJ1464 MJ1464. This f 99.2 1.9E-10 4.1E-15 80.7 8.9 94 9-105 4-97 (156)
150 cd01894 EngA1 EngA1 subfamily. 99.2 1.8E-10 3.8E-15 79.8 8.4 87 10-102 69-156 (157)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.7E-10 3.8E-15 93.6 9.4 89 9-106 274-362 (442)
152 cd00882 Ras_like_GTPase Ras-li 99.2 5.8E-10 1.3E-14 75.5 10.5 91 10-100 61-156 (157)
153 cd04171 SelB SelB subfamily. 99.2 3.9E-10 8.4E-15 78.7 9.7 88 9-101 66-163 (164)
154 KOG4423 GTP-binding protein-li 99.1 8.1E-11 1.7E-15 84.0 5.8 98 10-107 91-197 (229)
155 PRK03003 GTP-binding protein D 99.1 3.1E-10 6.7E-15 92.9 10.0 91 9-105 109-200 (472)
156 TIGR01393 lepA GTP-binding pro 99.1 3.1E-10 6.8E-15 95.2 10.0 93 10-105 86-181 (595)
157 TIGR03594 GTPase_EngA ribosome 99.1 1.4E-09 3E-14 87.9 13.3 93 10-105 247-345 (429)
158 KOG0070 GTP-binding ADP-ribosy 99.1 6.1E-10 1.3E-14 79.3 9.8 97 9-105 76-179 (181)
159 cd01854 YjeQ_engC YjeQ/EngC. 99.1 2.1E-10 4.6E-15 88.4 7.7 86 14-101 75-161 (287)
160 PRK04213 GTP-binding protein; 99.1 2E-10 4.3E-15 83.6 6.9 55 49-105 130-193 (201)
161 KOG1673 Ras GTPases [General f 99.1 3.5E-10 7.7E-15 78.7 7.6 98 10-107 85-189 (205)
162 PRK11058 GTPase HflX; Provisio 99.1 7.8E-10 1.7E-14 89.5 10.6 92 11-105 270-363 (426)
163 PRK12296 obgE GTPase CgtA; Rev 99.1 4.9E-10 1.1E-14 91.8 9.5 93 14-106 233-342 (500)
164 cd04164 trmE TrmE (MnmE, ThdF, 99.1 5.2E-10 1.1E-14 77.3 8.3 85 9-103 72-156 (157)
165 KOG0076 GTP-binding ADP-ribosy 99.1 3E-10 6.6E-15 80.2 6.5 100 7-106 82-189 (197)
166 PRK05291 trmE tRNA modificatio 99.1 4.3E-10 9.4E-15 91.5 8.2 85 10-105 287-371 (449)
167 cd01891 TypA_BipA TypA (tyrosi 99.1 1.2E-09 2.6E-14 79.2 9.4 83 8-93 79-171 (194)
168 cd01895 EngA2 EngA2 subfamily. 99.1 1.5E-09 3.2E-14 76.1 9.7 88 12-102 79-173 (174)
169 PRK00098 GTPase RsgA; Reviewed 99.1 3.7E-10 8E-15 87.5 6.5 85 15-101 78-164 (298)
170 PRK12288 GTPase RsgA; Reviewed 99.0 9E-10 1.9E-14 86.9 8.0 85 16-102 119-206 (347)
171 PRK12298 obgE GTPase CgtA; Rev 99.0 2E-09 4.4E-14 86.2 10.2 93 14-106 234-335 (390)
172 cd01887 IF2_eIF5B IF2/eIF5B (i 99.0 3.2E-09 6.9E-14 74.5 10.0 89 9-103 65-165 (168)
173 TIGR00231 small_GTP small GTP- 99.0 2.8E-09 6.1E-14 73.0 9.2 92 9-100 65-160 (161)
174 COG1100 GTPase SAR1 and relate 99.0 4.6E-09 1E-13 77.1 10.8 98 9-106 69-187 (219)
175 KOG0072 GTP-binding ADP-ribosy 99.0 3.6E-09 7.7E-14 72.8 9.2 102 4-105 72-180 (182)
176 PRK00089 era GTPase Era; Revie 99.0 3.4E-09 7.4E-14 81.6 10.1 97 5-105 72-172 (292)
177 TIGR00437 feoB ferrous iron tr 99.0 2.1E-09 4.5E-14 90.2 9.5 89 10-103 63-154 (591)
178 cd00881 GTP_translation_factor 99.0 5.7E-09 1.2E-13 74.4 10.3 93 9-104 77-187 (189)
179 TIGR03597 GTPase_YqeH ribosome 99.0 1.9E-09 4.2E-14 85.5 8.5 89 9-102 55-151 (360)
180 PRK05433 GTP-binding protein L 99.0 3.5E-09 7.5E-14 89.0 10.4 93 10-105 90-185 (600)
181 cd01888 eIF2_gamma eIF2-gamma 99.0 4.1E-09 8.9E-14 77.2 9.6 89 12-105 101-200 (203)
182 cd00880 Era_like Era (E. coli 99.0 3.6E-09 7.9E-14 72.5 8.5 91 9-102 67-162 (163)
183 PRK09518 bifunctional cytidyla 99.0 1.9E-08 4.2E-13 86.2 13.7 92 11-105 526-622 (712)
184 PRK00093 GTP-binding protein D 98.9 3.4E-08 7.3E-13 80.0 13.1 92 11-105 249-345 (435)
185 cd01889 SelB_euk SelB subfamil 98.9 1.5E-08 3.3E-13 73.3 9.4 87 16-105 90-187 (192)
186 PF02421 FeoB_N: Ferrous iron 98.9 4.5E-09 9.7E-14 74.1 6.3 87 8-99 67-156 (156)
187 KOG0071 GTP-binding ADP-ribosy 98.9 1.2E-08 2.5E-13 70.1 7.6 95 9-103 76-177 (180)
188 cd04163 Era Era subfamily. Er 98.9 2.5E-08 5.3E-13 69.1 9.4 89 10-102 75-167 (168)
189 KOG0075 GTP-binding ADP-ribosy 98.9 6.4E-09 1.4E-13 71.8 5.9 92 9-103 80-181 (186)
190 PF08477 Miro: Miro-like prote 98.8 9.5E-09 2.1E-13 68.4 6.4 49 12-60 68-119 (119)
191 PRK09518 bifunctional cytidyla 98.8 2.3E-08 5.1E-13 85.7 10.1 92 7-105 344-437 (712)
192 PF00009 GTP_EFTU: Elongation 98.8 3.3E-08 7.2E-13 71.4 9.2 91 11-104 87-187 (188)
193 TIGR03594 GTPase_EngA ribosome 98.8 5.6E-08 1.2E-12 78.5 11.0 93 7-105 68-161 (429)
194 PRK00093 GTP-binding protein D 98.8 4.4E-08 9.5E-13 79.4 9.8 87 9-103 72-161 (435)
195 TIGR00475 selB selenocysteine- 98.8 6.4E-08 1.4E-12 81.2 10.6 92 9-106 65-168 (581)
196 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.7E-08 8.1E-13 68.1 7.0 78 11-91 5-84 (141)
197 cd01856 YlqF YlqF. Proteins o 98.7 7E-08 1.5E-12 68.8 8.4 89 11-104 13-101 (171)
198 COG1159 Era GTPase [General fu 98.7 1E-07 2.2E-12 72.9 9.4 102 2-107 70-175 (298)
199 CHL00189 infB translation init 98.7 9.8E-08 2.1E-12 81.7 9.8 90 8-103 309-409 (742)
200 PRK00454 engB GTP-binding prot 98.7 2.3E-07 5E-12 66.9 9.7 92 9-103 95-193 (196)
201 KOG1707 Predicted Ras related/ 98.7 2.9E-08 6.2E-13 81.5 5.4 97 11-107 73-178 (625)
202 cd01858 NGP_1 NGP-1. Autoanti 98.7 9.9E-08 2.1E-12 67.0 7.5 88 13-103 4-94 (157)
203 cd01849 YlqF_related_GTPase Yl 98.6 1.9E-07 4.1E-12 65.5 8.1 81 19-103 1-84 (155)
204 PRK09554 feoB ferrous iron tra 98.6 2.5E-07 5.4E-12 79.8 10.0 89 10-103 76-167 (772)
205 TIGR00491 aIF-2 translation in 98.6 2.9E-07 6.3E-12 77.3 9.9 87 9-101 84-213 (590)
206 TIGR03598 GTPase_YsxC ribosome 98.6 2E-07 4.4E-12 66.7 7.5 80 11-93 91-179 (179)
207 TIGR00487 IF-2 translation ini 98.6 4.5E-07 9.8E-12 76.1 10.3 89 9-101 150-247 (587)
208 PRK05306 infB translation init 98.6 3.5E-07 7.6E-12 78.9 9.7 88 9-102 352-450 (787)
209 TIGR00483 EF-1_alpha translati 98.6 3.2E-07 6.9E-12 74.4 8.8 85 12-96 103-199 (426)
210 COG2262 HflX GTPases [General 98.6 9.2E-07 2E-11 70.3 10.9 92 14-108 268-360 (411)
211 COG2229 Predicted GTPase [Gene 98.6 1.1E-06 2.3E-11 62.9 9.9 92 9-102 83-176 (187)
212 TIGR03680 eif2g_arch translati 98.6 4.7E-07 1E-11 73.0 9.0 92 12-104 98-196 (406)
213 TIGR03596 GTPase_YlqF ribosome 98.5 5.7E-07 1.2E-11 69.0 8.9 90 11-105 15-104 (276)
214 PRK04000 translation initiatio 98.5 7.9E-07 1.7E-11 71.8 10.1 91 10-105 98-202 (411)
215 KOG1489 Predicted GTP-binding 98.5 5.2E-07 1.1E-11 69.7 8.4 92 9-101 263-364 (366)
216 PRK13796 GTPase YqeH; Provisio 98.5 8.5E-07 1.9E-11 70.6 9.9 83 15-102 66-157 (365)
217 TIGR01394 TypA_BipA GTP-bindin 98.5 6.6E-07 1.4E-11 75.3 9.6 93 10-105 80-192 (594)
218 PF10662 PduV-EutP: Ethanolami 98.5 6.2E-07 1.4E-11 62.2 7.6 78 17-100 63-142 (143)
219 cd01896 DRG The developmentall 98.5 1.3E-06 2.8E-11 65.5 9.4 49 50-103 177-225 (233)
220 COG0481 LepA Membrane GTPase L 98.5 1.2E-06 2.7E-11 70.9 9.5 90 15-107 97-189 (603)
221 KOG0074 GTP-binding ADP-ribosy 98.4 2.9E-07 6.3E-12 63.4 4.5 95 9-103 77-178 (185)
222 cd01876 YihA_EngB The YihA (En 98.4 1.7E-06 3.7E-11 60.0 8.5 88 10-102 71-169 (170)
223 KOG0462 Elongation factor-type 98.4 1.4E-06 3E-11 71.5 9.0 89 14-105 145-236 (650)
224 PRK10512 selenocysteinyl-tRNA- 98.4 2.2E-06 4.8E-11 72.5 10.3 89 10-104 67-166 (614)
225 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.8E-06 3.8E-11 66.6 8.8 90 11-105 18-107 (287)
226 cd04165 GTPBP1_like GTPBP1-lik 98.4 2.4E-06 5.2E-11 63.7 9.0 81 17-100 109-219 (224)
227 PRK09866 hypothetical protein; 98.4 2.7E-06 5.9E-11 71.5 9.9 88 13-101 254-350 (741)
228 PRK12317 elongation factor 1-a 98.4 1.5E-06 3.3E-11 70.4 8.1 83 13-96 103-197 (425)
229 cd04105 SR_beta Signal recogni 98.4 4.6E-06 1E-10 61.1 9.4 55 9-63 63-123 (203)
230 PRK01889 GTPase RsgA; Reviewed 98.4 2.7E-06 5.8E-11 67.6 8.6 83 15-100 110-193 (356)
231 COG1160 Predicted GTPases [Gen 98.4 2.9E-06 6.3E-11 68.3 8.7 94 3-104 69-165 (444)
232 PRK10218 GTP-binding protein; 98.3 5.5E-06 1.2E-10 69.9 10.1 94 9-105 83-196 (607)
233 cd04166 CysN_ATPS CysN_ATPS su 98.3 3.3E-06 7.1E-11 62.0 7.7 83 11-95 94-185 (208)
234 smart00010 small_GTPase Small 98.3 2.3E-07 5E-12 61.8 1.4 76 10-93 39-115 (124)
235 COG0486 ThdF Predicted GTPase 98.3 4.7E-06 1E-10 67.3 8.8 91 9-106 288-378 (454)
236 PRK04004 translation initiatio 98.3 6.6E-06 1.4E-10 69.3 10.0 86 10-101 87-215 (586)
237 TIGR00101 ureG urease accessor 98.3 3.1E-06 6.8E-11 61.9 6.9 80 18-104 113-196 (199)
238 COG0532 InfB Translation initi 98.3 6.5E-06 1.4E-10 67.4 9.1 82 16-103 77-169 (509)
239 cd01883 EF1_alpha Eukaryotic e 98.3 3.1E-06 6.8E-11 62.6 6.7 78 14-93 97-194 (219)
240 PRK14845 translation initiatio 98.3 6.3E-06 1.4E-10 73.0 9.4 87 10-102 542-671 (1049)
241 COG1162 Predicted GTPases [Gen 98.2 1E-05 2.2E-10 62.5 8.3 89 14-104 76-167 (301)
242 PRK13768 GTPase; Provisional 98.2 1.1E-05 2.4E-10 61.2 8.4 88 18-105 129-248 (253)
243 COG0536 Obg Predicted GTPase [ 98.2 1.3E-05 2.9E-10 62.5 8.5 93 15-107 235-336 (369)
244 PTZ00327 eukaryotic translatio 98.1 1.9E-05 4.1E-10 64.7 9.5 90 14-105 137-234 (460)
245 COG1160 Predicted GTPases [Gen 98.1 3.3E-05 7.1E-10 62.4 9.9 95 7-104 250-351 (444)
246 cd04167 Snu114p Snu114p subfam 98.1 2.1E-05 4.6E-10 57.9 8.3 51 9-62 86-136 (213)
247 PLN00043 elongation factor 1-a 98.0 1.8E-05 3.9E-10 64.7 7.3 82 10-94 101-203 (447)
248 PRK13351 elongation factor G; 98.0 5E-05 1.1E-09 65.1 10.0 52 9-63 88-139 (687)
249 cd01884 EF_Tu EF-Tu subfamily. 98.0 6.9E-05 1.5E-09 54.7 9.2 80 11-93 82-172 (195)
250 COG0370 FeoB Fe2+ transport sy 98.0 4.1E-05 8.9E-10 64.5 8.6 94 9-107 71-167 (653)
251 KOG1145 Mitochondrial translat 98.0 7.8E-05 1.7E-09 61.6 9.5 82 16-103 223-315 (683)
252 TIGR00073 hypB hydrogenase acc 97.9 5.1E-05 1.1E-09 55.7 7.4 54 49-102 148-205 (207)
253 KOG1423 Ras-like GTPase ERA [C 97.9 7E-05 1.5E-09 57.9 7.8 93 12-106 150-273 (379)
254 PF06858 NOG1: Nucleolar GTP-b 97.9 5.4E-05 1.2E-09 44.2 5.5 43 18-60 14-58 (58)
255 PRK00741 prfC peptide chain re 97.8 0.00016 3.5E-09 60.3 9.9 50 10-62 95-144 (526)
256 PRK12736 elongation factor Tu; 97.8 0.00012 2.5E-09 59.0 8.6 87 15-104 96-201 (394)
257 PRK12740 elongation factor G; 97.8 0.00016 3.5E-09 61.9 9.8 52 9-63 75-126 (668)
258 KOG0077 Vesicle coat complex C 97.8 7.8E-05 1.7E-09 52.8 5.7 97 7-103 77-192 (193)
259 PRK12735 elongation factor Tu; 97.7 0.0002 4.4E-09 57.6 8.6 88 13-103 94-202 (396)
260 cd04168 TetM_like Tet(M)-like 97.7 0.00023 5E-09 53.4 8.3 68 9-79 79-146 (237)
261 KOG1707 Predicted Ras related/ 97.7 0.00019 4.2E-09 59.5 8.2 88 16-105 494-584 (625)
262 cd01885 EF2 EF2 (for archaea a 97.7 0.00012 2.6E-09 54.5 6.0 52 8-62 87-138 (222)
263 cd00066 G-alpha G protein alph 97.7 0.00011 2.5E-09 57.4 5.9 98 8-105 175-312 (317)
264 TIGR02034 CysN sulfate adenyly 97.7 0.00025 5.4E-09 57.3 7.9 80 13-94 99-187 (406)
265 KOG1490 GTP-binding protein CR 97.6 0.00027 5.8E-09 58.0 7.8 87 19-105 249-342 (620)
266 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00037 8.1E-09 53.3 8.2 70 10-82 87-156 (267)
267 TIGR00485 EF-Tu translation el 97.6 0.00044 9.4E-09 55.7 8.9 72 16-90 97-179 (394)
268 smart00275 G_alpha G protein a 97.6 0.00016 3.5E-09 57.2 6.1 98 8-105 198-335 (342)
269 COG4917 EutP Ethanolamine util 97.6 0.0002 4.4E-09 48.5 5.5 81 16-102 63-144 (148)
270 PRK05124 cysN sulfate adenylyl 97.6 0.00032 7E-09 57.8 7.8 79 15-95 128-216 (474)
271 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 0.00076 1.7E-08 50.6 8.7 95 10-105 69-177 (232)
272 PRK09435 membrane ATPase/prote 97.5 0.00077 1.7E-08 53.1 8.5 85 14-105 166-261 (332)
273 CHL00071 tufA elongation facto 97.5 0.00098 2.1E-08 54.0 8.9 78 12-92 93-181 (409)
274 COG1084 Predicted GTPase [Gene 97.4 0.00085 1.9E-08 52.4 7.7 87 18-105 248-337 (346)
275 cd04170 EF-G_bact Elongation f 97.4 0.0012 2.6E-08 50.3 8.6 92 9-103 79-172 (268)
276 PRK05506 bifunctional sulfate 97.4 0.00082 1.8E-08 57.3 8.2 79 14-94 124-211 (632)
277 cd01899 Ygr210 Ygr210 subfamil 97.4 0.0017 3.6E-08 51.0 9.1 60 49-110 214-275 (318)
278 PRK12739 elongation factor G; 97.3 0.0024 5.2E-08 55.0 9.8 51 10-63 89-139 (691)
279 TIGR00750 lao LAO/AO transport 97.3 0.001 2.3E-08 51.6 6.8 84 14-104 144-238 (300)
280 cd04104 p47_IIGP_like p47 (47- 97.3 0.0017 3.7E-08 47.2 7.5 86 15-106 78-186 (197)
281 KOG0705 GTPase-activating prot 97.3 0.00074 1.6E-08 56.0 6.0 96 11-106 89-191 (749)
282 PRK00049 elongation factor Tu; 97.2 0.0025 5.3E-08 51.4 8.9 88 13-103 94-202 (396)
283 cd01886 EF-G Elongation factor 97.2 0.0029 6.4E-08 48.4 8.4 78 9-89 79-160 (270)
284 PF09439 SRPRB: Signal recogni 97.1 0.0024 5.1E-08 46.2 6.9 50 14-63 72-126 (181)
285 TIGR02836 spore_IV_A stage IV 97.1 0.0028 6E-08 51.5 7.6 91 11-104 137-237 (492)
286 TIGR00484 EF-G translation elo 97.1 0.0029 6.3E-08 54.5 8.3 77 10-89 91-171 (689)
287 COG1163 DRG Predicted GTPase [ 97.1 0.0051 1.1E-07 48.2 8.5 50 50-104 240-289 (365)
288 COG0218 Predicted GTPase [Gene 97.0 0.01 2.2E-07 43.4 9.3 92 10-104 96-197 (200)
289 KOG3905 Dynein light intermedi 97.0 0.0048 1E-07 48.5 8.0 57 49-105 222-291 (473)
290 COG5257 GCD11 Translation init 97.0 0.0023 5E-08 50.1 6.3 88 18-106 110-204 (415)
291 PLN03127 Elongation factor Tu; 97.0 0.0067 1.5E-07 49.7 9.3 87 15-104 145-252 (447)
292 PLN03126 Elongation factor Tu; 97.0 0.0033 7.1E-08 52.0 7.4 76 14-92 164-250 (478)
293 PTZ00141 elongation factor 1- 97.0 0.0045 9.7E-08 50.8 8.1 80 13-94 104-203 (446)
294 KOG0090 Signal recognition par 96.9 0.011 2.5E-07 43.6 9.0 90 12-102 100-237 (238)
295 TIGR00503 prfC peptide chain r 96.9 0.0036 7.7E-08 52.4 7.3 52 9-63 95-146 (527)
296 PRK00007 elongation factor G; 96.8 0.012 2.7E-07 50.7 10.0 49 11-62 92-140 (693)
297 COG0378 HypB Ni2+-binding GTPa 96.8 0.0024 5.3E-08 46.5 4.8 82 13-103 113-200 (202)
298 KOG1532 GTPase XAB1, interacts 96.8 0.018 3.8E-07 44.4 9.6 86 18-105 148-265 (366)
299 COG1161 Predicted GTPases [Gen 96.8 0.0027 5.9E-08 49.8 5.5 83 10-97 27-110 (322)
300 cd04178 Nucleostemin_like Nucl 96.8 0.0044 9.6E-08 44.3 5.8 44 19-63 1-44 (172)
301 KOG1191 Mitochondrial GTPase [ 96.6 0.0063 1.4E-07 50.0 6.4 97 11-107 342-453 (531)
302 KOG1424 Predicted GTP-binding 96.6 0.0048 1E-07 50.9 5.6 72 14-88 171-244 (562)
303 PRK10463 hydrogenase nickel in 96.5 0.0044 9.5E-08 48.0 4.7 54 49-102 230-287 (290)
304 COG3276 SelB Selenocysteine-sp 96.4 0.02 4.4E-07 46.4 8.0 85 17-103 73-161 (447)
305 COG2895 CysN GTPases - Sulfate 96.2 0.025 5.3E-07 45.0 6.9 73 17-93 109-192 (431)
306 PF05783 DLIC: Dynein light in 96.1 0.039 8.5E-07 45.6 8.2 57 49-105 196-265 (472)
307 COG1217 TypA Predicted membran 96.1 0.04 8.7E-07 45.3 7.9 90 14-106 88-197 (603)
308 COG5256 TEF1 Translation elong 96.1 0.025 5.3E-07 45.7 6.6 80 17-96 108-203 (428)
309 PF03029 ATP_bind_1: Conserved 95.9 0.028 6E-07 42.3 6.1 87 17-103 122-236 (238)
310 cd01850 CDC_Septin CDC/Septin. 95.9 0.024 5.1E-07 43.6 5.8 71 13-87 108-185 (276)
311 cd01882 BMS1 Bms1. Bms1 is an 95.8 0.06 1.3E-06 40.0 7.7 76 13-91 99-183 (225)
312 cd01852 AIG1 AIG1 (avrRpt2-ind 95.8 0.13 2.8E-06 37.1 9.2 90 15-106 81-186 (196)
313 KOG0082 G-protein alpha subuni 95.7 0.039 8.6E-07 43.8 6.2 100 6-105 207-345 (354)
314 KOG0410 Predicted GTP binding 95.6 0.043 9.2E-07 43.3 6.1 85 13-105 253-342 (410)
315 cd03110 Fer4_NifH_child This p 95.5 0.15 3.3E-06 36.1 8.4 69 11-83 108-176 (179)
316 PF03308 ArgK: ArgK protein; 95.4 0.022 4.9E-07 43.3 3.8 83 15-104 140-230 (266)
317 PF01926 MMR_HSR1: 50S ribosom 95.3 0.079 1.7E-06 34.7 5.9 44 11-58 73-116 (116)
318 PF00350 Dynamin_N: Dynamin fa 95.2 0.073 1.6E-06 37.1 5.8 49 9-59 120-168 (168)
319 KOG2484 GTPase [General functi 95.0 0.078 1.7E-06 42.7 6.0 63 13-78 142-206 (435)
320 smart00053 DYNc Dynamin, GTPas 95.0 0.094 2E-06 39.6 6.3 56 7-64 151-207 (240)
321 TIGR00490 aEF-2 translation el 94.9 0.079 1.7E-06 46.1 6.4 52 9-63 101-152 (720)
322 COG1703 ArgK Putative periplas 94.7 0.17 3.7E-06 39.4 7.1 83 16-105 163-255 (323)
323 KOG1144 Translation initiation 94.6 0.22 4.7E-06 43.4 8.0 89 11-105 557-688 (1064)
324 COG1149 MinD superfamily P-loo 94.6 0.25 5.4E-06 38.0 7.5 63 13-82 181-243 (284)
325 KOG2423 Nucleolar GTPase [Gene 94.5 0.26 5.7E-06 40.0 7.9 86 15-103 211-299 (572)
326 KOG4273 Uncharacterized conser 94.3 0.1 2.2E-06 39.8 5.0 85 18-103 79-221 (418)
327 KOG0458 Elongation factor 1 al 93.6 0.27 5.9E-06 41.4 6.5 78 17-95 278-373 (603)
328 PTZ00416 elongation factor 2; 93.5 0.15 3.3E-06 45.1 5.3 49 11-62 109-157 (836)
329 PF09419 PGP_phosphatase: Mito 93.5 1.4 3E-05 31.5 9.2 86 15-100 36-128 (168)
330 KOG0461 Selenocysteine-specifi 93.4 0.78 1.7E-05 36.8 8.5 96 7-106 80-195 (522)
331 PF11111 CENP-M: Centromere pr 93.2 1.1 2.4E-05 32.2 8.3 87 17-104 64-153 (176)
332 PLN00116 translation elongatio 93.1 0.23 5E-06 44.0 5.8 48 12-62 116-163 (843)
333 PRK13505 formate--tetrahydrofo 93.0 0.93 2E-05 38.2 8.8 71 33-105 358-430 (557)
334 COG3596 Predicted GTPase [Gene 92.6 1.3 2.9E-05 34.2 8.5 101 8-109 108-227 (296)
335 PRK07560 elongation factor EF- 92.6 0.26 5.6E-06 43.0 5.3 51 9-62 102-152 (731)
336 PF00503 G-alpha: G-protein al 92.3 0.17 3.8E-06 40.6 3.7 55 8-62 250-316 (389)
337 KOG0468 U5 snRNP-specific prot 92.3 0.24 5.2E-06 42.7 4.5 50 10-62 213-262 (971)
338 PRK09602 translation-associate 92.3 0.4 8.7E-06 38.9 5.7 57 49-107 217-274 (396)
339 KOG0466 Translation initiation 91.9 0.2 4.3E-06 39.4 3.5 58 50-107 180-244 (466)
340 COG5258 GTPBP1 GTPase [General 91.5 1.9 4.2E-05 35.1 8.5 56 49-105 255-339 (527)
341 COG0050 TufB GTPases - transla 91.2 0.79 1.7E-05 35.9 6.0 68 17-87 98-176 (394)
342 KOG1954 Endocytosis/signaling 90.5 0.4 8.7E-06 38.7 3.9 53 9-63 173-225 (532)
343 COG0480 FusA Translation elong 90.1 1.2 2.6E-05 38.8 6.7 48 13-63 95-142 (697)
344 PF14331 ImcF-related_N: ImcF- 89.7 0.85 1.8E-05 34.9 5.1 90 17-106 25-133 (266)
345 KOG2485 Conserved ATP/GTP bind 88.8 1.6 3.5E-05 34.3 6.0 86 13-103 42-130 (335)
346 COG3640 CooC CO dehydrogenase 88.6 1.2 2.6E-05 33.7 5.1 46 13-61 151-197 (255)
347 KOG3886 GTP-binding protein [S 86.2 1.8 4E-05 32.8 4.8 52 12-63 76-130 (295)
348 KOG1143 Predicted translation 84.4 5.3 0.00011 32.6 6.8 74 18-94 275-378 (591)
349 KOG2486 Predicted GTPase [Gene 83.5 0.52 1.1E-05 36.5 0.9 88 9-101 208-313 (320)
350 COG4963 CpaE Flp pilus assembl 83.3 9 0.0002 30.8 7.8 55 8-63 230-285 (366)
351 KOG0460 Mitochondrial translat 81.6 5.3 0.00012 32.1 5.8 68 18-87 141-218 (449)
352 cd02038 FleN-like FleN is a me 81.5 8.9 0.00019 26.0 6.4 51 10-61 59-109 (139)
353 PRK13695 putative NTPase; Prov 81.0 15 0.00032 25.7 7.7 84 7-103 86-172 (174)
354 COG4108 PrfC Peptide chain rel 80.3 7.7 0.00017 32.2 6.5 62 16-82 103-166 (528)
355 PF03193 DUF258: Protein of un 79.2 4.2 9.2E-05 28.8 4.3 31 71-101 5-35 (161)
356 COG0523 Putative GTPases (G3E 79.0 10 0.00023 29.9 6.8 66 17-86 116-184 (323)
357 KOG0448 Mitofusin 1 GTPase, in 77.8 15 0.00032 32.1 7.7 51 10-63 225-275 (749)
358 KOG0463 GTP-binding protein GP 77.2 7.7 0.00017 31.7 5.6 54 49-103 273-356 (641)
359 cd02036 MinD Bacterial cell di 76.0 23 0.0005 24.4 7.8 70 11-82 78-147 (179)
360 TIGR00064 ftsY signal recognit 75.7 20 0.00042 27.5 7.4 72 17-98 190-262 (272)
361 PRK10416 signal recognition pa 74.4 22 0.00047 28.0 7.5 71 17-97 232-303 (318)
362 KOG3887 Predicted small GTPase 72.3 30 0.00064 26.7 7.3 92 13-105 97-203 (347)
363 PF03709 OKR_DC_1_N: Orn/Lys/A 71.6 15 0.00032 24.2 5.2 42 17-59 36-77 (115)
364 PHA02518 ParA-like protein; Pr 71.2 28 0.0006 24.8 7.0 52 9-61 90-145 (211)
365 COG2179 Predicted hydrolase of 70.6 23 0.00051 25.4 6.1 68 10-86 18-92 (175)
366 KOG2961 Predicted hydrolase (H 69.2 38 0.00083 24.1 7.4 55 47-101 77-132 (190)
367 cd00477 FTHFS Formyltetrahydro 68.7 48 0.001 28.1 8.4 66 37-104 346-413 (524)
368 PRK14974 cell division protein 68.2 36 0.00077 27.1 7.4 72 17-98 252-324 (336)
369 PF13651 EcoRI_methylase: Aden 67.7 12 0.00026 29.6 4.6 50 4-61 122-171 (336)
370 cd03111 CpaE_like This protein 67.1 29 0.00063 22.3 5.8 48 10-58 57-106 (106)
371 KOG0099 G protein subunit Galp 66.9 9.9 0.00022 29.5 3.9 26 80-105 345-370 (379)
372 PRK13507 formate--tetrahydrofo 66.5 59 0.0013 27.9 8.6 64 39-104 393-458 (587)
373 KOG0085 G protein subunit Galp 65.7 20 0.00044 27.4 5.3 59 48-106 265-351 (359)
374 TIGR03371 cellulose_yhjQ cellu 64.8 44 0.00096 24.5 7.1 53 9-62 128-181 (246)
375 PF09547 Spore_IV_A: Stage IV 64.7 20 0.00043 29.8 5.4 64 38-103 171-236 (492)
376 COG2759 MIS1 Formyltetrahydrof 64.4 53 0.0012 27.5 7.8 66 38-105 360-427 (554)
377 COG0012 Predicted GTPase, prob 63.2 19 0.00041 29.1 5.0 39 49-87 206-247 (372)
378 PF02492 cobW: CobW/HypB/UreG, 62.5 12 0.00027 26.4 3.6 44 17-64 113-156 (178)
379 PRK00771 signal recognition pa 60.9 48 0.001 27.4 7.1 70 16-95 204-274 (437)
380 PF04548 AIG1: AIG1 family; I 59.9 59 0.0013 23.7 6.9 92 14-107 80-189 (212)
381 PTZ00258 GTP-binding protein; 58.2 12 0.00025 30.5 3.1 42 49-90 220-266 (390)
382 cd01853 Toc34_like Toc34-like 58.2 36 0.00077 25.8 5.6 50 12-62 107-162 (249)
383 TIGR03348 VI_IcmF type VI secr 57.8 17 0.00037 33.8 4.5 48 16-63 200-257 (1169)
384 cd04170 EF-G_bact Elongation f 57.6 8.8 0.00019 29.0 2.3 26 79-104 241-266 (268)
385 KOG1249 Predicted GTPases [Gen 57.2 19 0.00041 30.6 4.2 83 17-104 110-211 (572)
386 cd03112 CobW_like The function 56.4 19 0.00041 25.0 3.6 40 17-61 118-158 (158)
387 COG1908 FrhD Coenzyme F420-red 56.4 29 0.00062 23.5 4.2 56 51-106 56-124 (132)
388 PRK13506 formate--tetrahydrofo 55.9 1.2E+02 0.0026 26.1 8.6 64 39-104 385-451 (578)
389 TIGR00959 ffh signal recogniti 54.0 79 0.0017 26.1 7.3 70 17-95 212-281 (428)
390 PF10087 DUF2325: Uncharacteri 53.2 47 0.001 21.0 4.8 47 49-100 48-94 (97)
391 PRK12727 flagellar biosynthesi 51.9 1.3E+02 0.0028 25.9 8.3 67 20-95 460-527 (559)
392 PF01268 FTHFS: Formate--tetra 51.2 21 0.00045 30.4 3.6 67 35-103 359-427 (557)
393 COG4502 5'(3')-deoxyribonucleo 51.0 53 0.0011 23.1 4.9 42 18-59 84-125 (180)
394 TIGR01007 eps_fam capsular exo 50.8 60 0.0013 23.2 5.7 46 14-62 147-193 (204)
395 COG1358 RPL8A Ribosomal protei 47.8 56 0.0012 21.8 4.6 41 17-62 43-83 (116)
396 cd04168 TetM_like Tet(M)-like 47.7 16 0.00036 27.2 2.3 26 79-104 210-235 (237)
397 KOG3929 Uncharacterized conser 47.5 47 0.001 25.9 4.6 14 49-62 190-203 (363)
398 KOG0447 Dynamin-like GTP bindi 47.4 44 0.00095 28.9 4.8 53 9-64 440-494 (980)
399 cd00959 DeoC 2-deoxyribose-5-p 47.4 88 0.0019 22.7 6.1 68 17-85 82-151 (203)
400 PF05014 Nuc_deoxyrib_tr: Nucl 47.3 76 0.0016 20.5 5.3 45 13-61 57-101 (113)
401 cd02067 B12-binding B12 bindin 47.2 42 0.00091 21.8 4.0 58 19-84 50-108 (119)
402 PLN02759 Formate--tetrahydrofo 47.1 1.8E+02 0.0038 25.4 8.4 63 40-104 443-508 (637)
403 TIGR00126 deoC deoxyribose-pho 46.7 90 0.002 23.1 6.0 70 16-86 82-153 (211)
404 TIGR01425 SRP54_euk signal rec 44.4 1.4E+02 0.0031 24.7 7.3 69 17-95 212-281 (429)
405 cd04169 RF3 RF3 subfamily. Pe 43.5 19 0.00041 27.5 2.1 26 79-104 240-265 (267)
406 PRK09601 GTP-binding protein Y 42.8 46 0.001 26.8 4.3 39 49-87 199-240 (364)
407 PF00735 Septin: Septin; Inte 42.8 39 0.00084 26.1 3.7 65 17-85 113-182 (281)
408 PTZ00386 formyl tetrahydrofola 42.6 1.8E+02 0.004 25.2 7.8 64 40-105 430-497 (625)
409 cd01886 EF-G Elongation factor 41.9 21 0.00046 27.3 2.1 26 79-104 243-268 (270)
410 PRK06995 flhF flagellar biosyn 41.2 2.1E+02 0.0045 24.1 7.9 76 21-105 368-448 (484)
411 PF00319 SRF-TF: SRF-type tran 41.0 38 0.00082 19.1 2.6 20 11-30 26-45 (51)
412 PRK09602 translation-associate 39.6 63 0.0014 26.3 4.6 20 9-28 91-113 (396)
413 PF01656 CbiA: CobQ/CobB/MinD/ 39.1 91 0.002 21.6 5.0 52 11-63 110-162 (195)
414 cd02117 NifH_like This family 38.3 1.5E+02 0.0033 21.3 6.9 65 16-83 140-207 (212)
415 PRK13556 azoreductase; Provisi 38.0 64 0.0014 23.4 4.1 34 13-46 85-118 (208)
416 TIGR00991 3a0901s02IAP34 GTP-b 37.8 80 0.0017 24.9 4.8 45 17-62 118-166 (313)
417 KOG0467 Translation elongation 37.3 60 0.0013 29.0 4.3 47 12-61 90-136 (887)
418 PRK14723 flhF flagellar biosyn 37.3 2.2E+02 0.0048 25.5 7.8 81 18-105 294-380 (767)
419 PF07905 PucR: Purine cataboli 36.8 1.2E+02 0.0027 19.9 9.4 63 35-103 60-122 (123)
420 PF08438 MMR_HSR1_C: GTPase of 36.0 30 0.00065 22.9 1.9 30 55-87 1-32 (109)
421 cd03115 SRP The signal recogni 36.0 1.5E+02 0.0031 20.5 7.1 60 17-83 112-171 (173)
422 cd02037 MRP-like MRP (Multiple 35.2 1.3E+02 0.0029 20.6 5.3 64 16-82 90-162 (169)
423 cd07388 MPP_Tt1561 Thermus the 35.1 71 0.0015 23.8 4.0 44 16-61 30-74 (224)
424 TIGR01968 minD_bact septum sit 34.9 1.5E+02 0.0032 21.8 5.8 49 11-61 127-175 (261)
425 TIGR03677 rpl7ae 50S ribosomal 34.6 42 0.00091 22.3 2.5 39 18-61 43-81 (117)
426 PRK10867 signal recognition pa 33.9 2.4E+02 0.0051 23.4 7.1 71 17-96 213-283 (433)
427 cd07379 MPP_239FB Homo sapiens 33.5 66 0.0014 21.3 3.4 44 16-61 18-62 (135)
428 PRK14721 flhF flagellar biosyn 33.3 2.5E+02 0.0054 23.2 7.1 79 18-105 300-383 (420)
429 PRK11537 putative GTP-binding 31.9 1.6E+02 0.0034 23.2 5.6 61 18-85 123-186 (318)
430 PF14784 ECIST_Cterm: C-termin 31.0 90 0.002 21.2 3.6 39 16-54 82-123 (126)
431 TIGR00503 prfC peptide chain r 30.7 41 0.0009 28.4 2.4 28 79-106 250-277 (527)
432 PF05049 IIGP: Interferon-indu 30.4 73 0.0016 25.9 3.6 89 16-110 113-224 (376)
433 TIGR02475 CobW cobalamin biosy 30.4 1.9E+02 0.0041 23.0 5.9 34 52-85 176-212 (341)
434 cd01840 SGNH_hydrolase_yrhL_li 29.8 1.8E+02 0.0039 19.6 5.4 64 17-83 50-115 (150)
435 TIGR03566 FMN_reduc_MsuE FMN r 29.8 86 0.0019 21.9 3.6 13 15-27 66-78 (174)
436 PF12327 FtsZ_C: FtsZ family, 29.3 1.5E+02 0.0033 18.7 5.0 48 13-60 31-78 (95)
437 smart00432 MADS MADS domain. 28.7 66 0.0014 18.7 2.3 23 8-30 30-52 (59)
438 KOG4271 Rho-GTPase activating 28.3 58 0.0013 29.7 2.8 32 78-109 3-34 (1100)
439 PRK02261 methylaspartate mutas 27.7 2E+02 0.0043 19.5 9.5 81 17-104 54-135 (137)
440 TIGR01969 minD_arch cell divis 27.2 2.5E+02 0.0054 20.4 6.0 48 11-61 124-172 (251)
441 PRK06242 flavodoxin; Provision 27.0 1.2E+02 0.0025 20.4 3.8 67 14-82 40-106 (150)
442 cd03114 ArgK-like The function 26.9 1.2E+02 0.0026 20.7 3.8 41 13-60 108-148 (148)
443 PRK06731 flhF flagellar biosyn 26.8 3E+02 0.0064 21.2 7.2 38 52-93 214-251 (270)
444 KOG1486 GTP-binding protein DR 26.7 2.3E+02 0.005 22.2 5.4 49 50-104 239-288 (364)
445 COG1010 CobJ Precorrin-3B meth 26.7 2.2E+02 0.0048 21.7 5.3 47 13-59 150-197 (249)
446 KOG0465 Mitochondrial elongati 26.4 2.3E+02 0.0051 24.9 5.9 83 15-104 125-209 (721)
447 PRK13660 hypothetical protein; 26.4 1.6E+02 0.0035 21.3 4.4 12 17-28 129-140 (182)
448 cd08166 MPP_Cdc1_like_1 unchar 26.2 2.6E+02 0.0057 20.4 5.9 61 17-77 42-111 (195)
449 PRK05428 HPr kinase/phosphoryl 26.2 3.2E+02 0.0069 21.6 6.4 53 48-105 81-133 (308)
450 PF00448 SRP54: SRP54-type pro 26.2 2.5E+02 0.0055 20.2 7.1 40 52-95 143-182 (196)
451 cd01844 SGNH_hydrolase_like_6 25.9 2.3E+02 0.0049 19.5 5.5 42 17-58 57-102 (177)
452 PF10881 DUF2726: Protein of u 25.3 1.6E+02 0.0035 19.3 4.2 31 72-102 95-125 (126)
453 KOG0464 Elongation factor G [T 25.2 39 0.00084 28.1 1.2 65 13-80 121-185 (753)
454 KOG0469 Elongation factor 2 [T 25.2 67 0.0015 27.5 2.6 48 12-62 116-163 (842)
455 TIGR03029 EpsG chain length de 25.0 2.6E+02 0.0057 20.9 5.7 9 18-26 236-244 (274)
456 cd00120 MADS MADS: MCM1, Agamo 24.8 64 0.0014 18.7 1.8 20 11-30 33-52 (59)
457 PRK04175 rpl7ae 50S ribosomal 24.8 81 0.0018 21.1 2.5 39 18-61 47-85 (122)
458 PTZ00222 60S ribosomal protein 24.4 64 0.0014 24.8 2.2 41 16-61 147-187 (263)
459 PHA03050 glutaredoxin; Provisi 24.4 1.4E+02 0.0031 19.3 3.6 10 49-58 69-78 (108)
460 PF02603 Hpr_kinase_N: HPr Ser 24.1 73 0.0016 21.3 2.2 36 48-88 80-115 (127)
461 CHL00175 minD septum-site dete 24.0 3E+02 0.0065 20.7 5.9 49 11-61 142-190 (281)
462 COG4359 Uncharacterized conser 24.0 1.3E+02 0.0028 22.2 3.5 32 69-100 80-111 (220)
463 PRK11889 flhF flagellar biosyn 23.8 4.1E+02 0.0089 22.1 6.7 37 53-93 381-417 (436)
464 cd00266 MADS_SRF_like SRF-like 23.6 1E+02 0.0022 19.0 2.7 27 4-30 26-52 (83)
465 PF14606 Lipase_GDSL_3: GDSL-l 23.4 1.9E+02 0.0042 20.8 4.4 46 11-56 51-100 (178)
466 PRK13555 azoreductase; Provisi 22.9 1.7E+02 0.0038 21.4 4.2 34 12-45 84-117 (208)
467 PRK00507 deoxyribose-phosphate 22.8 3.2E+02 0.007 20.2 6.2 72 16-88 86-159 (221)
468 PF03358 FMN_red: NADPH-depend 22.5 2E+02 0.0044 19.2 4.3 69 11-79 64-137 (152)
469 cd07393 MPP_DR1119 Deinococcus 22.3 2.1E+02 0.0046 21.0 4.7 17 17-33 41-57 (232)
470 COG0420 SbcD DNA repair exonuc 22.3 1.6E+02 0.0035 23.5 4.3 45 16-61 39-87 (390)
471 PRK06756 flavodoxin; Provision 22.2 2E+02 0.0044 19.3 4.3 10 16-25 48-57 (148)
472 PRK00170 azoreductase; Reviewe 22.1 1.5E+02 0.0032 21.0 3.7 32 13-44 82-113 (201)
473 cd01832 SGNH_hydrolase_like_1 21.5 1.9E+02 0.0041 19.8 4.1 38 16-55 66-111 (185)
474 PRK00945 acetyl-CoA decarbonyl 21.0 2.7E+02 0.0058 19.9 4.7 37 49-86 35-71 (171)
475 PRK04017 hypothetical protein; 21.0 1.8E+02 0.0039 19.9 3.7 31 31-61 4-34 (132)
476 PF00205 TPP_enzyme_M: Thiamin 20.6 1.3E+02 0.0029 19.9 3.0 37 49-87 12-48 (137)
477 cd01900 YchF YchF subfamily. 20.2 1.4E+02 0.0031 23.0 3.4 39 49-87 195-236 (274)
478 TIGR03567 FMN_reduc_SsuE FMN r 20.0 1.5E+02 0.0032 20.7 3.2 8 17-24 65-72 (171)
479 PRK09739 hypothetical protein; 20.0 1.9E+02 0.0041 20.7 3.9 33 13-45 75-107 (199)
480 PF12724 Flavodoxin_5: Flavodo 20.0 2.6E+02 0.0057 18.7 4.4 46 14-59 40-85 (143)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.6e-24 Score=152.76 Aligned_cols=106 Identities=31% Similarity=0.485 Sum_probs=95.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCc-eEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~-~~e~ 84 (153)
.++.+||++|+++|+|||+|+.+||..+..|+.++.++. +++|.++||||||+.+ +.++.+ ++.|+..++++ |+++
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence 689999999999999999999999999999999999996 6789999999999986 667665 77999999998 9999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCCcccC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPNLHFVES 114 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~ 114 (153)
|||++.||+++|..|+..+..+.......+
T Consensus 153 SAK~~~NVe~~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred ccCCccCHHHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999999999987665544443
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9e-24 Score=152.31 Aligned_cols=102 Identities=25% Similarity=0.492 Sum_probs=94.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++++||++|+++++|||+++..||+.+..|+..+.++. +++|++|||||+|+.. ++|+.+ ++++|.++|+.|+|||
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtS 155 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETS 155 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEcc
Confidence 588999999999999999999999999999999999986 5899999999999986 788776 8899999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~~ 110 (153)
||+|.||+++|..|++.+..+....
T Consensus 156 Ak~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 156 AKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred ccCCCCHHHHHHHHHHHHHhhcchh
Confidence 9999999999999999998755443
No 3
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=9.4e-23 Score=149.29 Aligned_cols=141 Identities=74% Similarity=1.141 Sum_probs=117.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..+++.||+++|++|+|||++++.||..+..|+.++.+.+.++|+++||||+|+..+.+..+...+++..++.|++|||+
T Consensus 58 ~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk 137 (200)
T smart00176 58 GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAK 137 (200)
T ss_pred hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCC
Confidence 45778999999999999999999999999999999988777899999999999976666555557888889999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHHHHHHHHHHHHHHhCCCCCCCC
Q 031782 88 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDD 148 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 148 (153)
+|.||+++|.+|++.+....+......+...+.+...+....++.+..+..+..-..|..+
T Consensus 138 ~~~~v~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (200)
T smart00176 138 SNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAATTALPDED 198 (200)
T ss_pred CCCCHHHHHHHHHHHHHhcccceeccCcccCCcccccChhhhhhhhHHHHHHHHhcCCCCC
Confidence 9999999999999999887666667777777877777777888888766555433334433
No 4
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=2e-22 Score=149.44 Aligned_cols=143 Identities=94% Similarity=1.371 Sum_probs=124.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..++..||+++|++|+|||++++.||..+..|+..+...+.++|+++||||+|+.++.+..+...+++..+++|++|||+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk 155 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 155 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCC
Confidence 36678899999999999999999999999999999988777899999999999976655554447788888999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHHHHHHHHHHHHHHhCCCCCCCCcc
Q 031782 88 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 150 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 150 (153)
+|.|++++|.+|++.+...........+...+..+..+....++.+..+.+++...+++.++.
T Consensus 156 ~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (219)
T PLN03071 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD 218 (219)
T ss_pred CCCCHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999988777777778888888888898889999898988887777776654
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-22 Score=143.23 Aligned_cols=100 Identities=27% Similarity=0.443 Sum_probs=92.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++++||++|.++|+|||+++++||..+..|+..++++. ++..++|+|||+||.. +.|+.+ ++.||+++|+.|+++
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmET 148 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMET 148 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehh
Confidence 5689999999999999999999999999999999999985 7899999999999985 788776 889999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++++||+++|......|..+.
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999997643
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-22 Score=142.68 Aligned_cols=102 Identities=26% Similarity=0.441 Sum_probs=91.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+.+.|||+|+++|+|||+|+.+||..++.|+.++++.. +++.+.|||||+||.+ +.+..+ ...+|...|..|+|+
T Consensus 68 ~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092|consen 68 HSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred cccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEE
Confidence 4578899999999999999999999999999999999885 4677888999999997 777665 779999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPNL 109 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~~ 109 (153)
|||+|.||+++|..|.+.++.....
T Consensus 148 SAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 148 SAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ecccccCHHHHHHHHHHhccCcccc
Confidence 9999999999999999999876543
No 7
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-22 Score=137.78 Aligned_cols=104 Identities=21% Similarity=0.355 Sum_probs=94.5
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
...++..||++|+++|++||++|.+||..++.|.-.+..++ .++|+++||||||+.+ +.++.+ +..++..+|..|||
T Consensus 83 yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 83 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhh
Confidence 34688999999999999999999999999999999999887 6899999999999985 667766 78999999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCCCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~ 110 (153)
+|||.+.||+++|+.++..|-.+.+.+
T Consensus 163 tSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 163 TSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred hcccccccHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999997765443
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.87 E-value=3e-21 Score=140.23 Aligned_cols=101 Identities=23% Similarity=0.475 Sum_probs=89.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+++.||+++|++|+|||++++.||+.+..|+.++....++.|+++||||+|+.+ +.+..+ +..+++.+++.|++||
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~S 148 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVS 148 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEec
Confidence 35778999999999999999999999999999999987767899999999999975 556554 6789999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
|++|.||+++|.++++.+.....
T Consensus 149 Ak~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 149 PLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999998875443
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.85 E-value=2.2e-20 Score=136.98 Aligned_cols=99 Identities=24% Similarity=0.493 Sum_probs=86.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHc-CCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e 83 (153)
..+++.||++||++|+|||+++++||+.+..|+..+.... .++|+++||||+|+.+ +.+..+ ..++++.+ ++.|++
T Consensus 63 ~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~e 142 (202)
T cd04120 63 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCE 142 (202)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999999999999999887764 5799999999999974 666654 66788775 788999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
|||++|.||+++|.++++.+...
T Consensus 143 tSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 143 ASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=5.2e-21 Score=132.81 Aligned_cols=103 Identities=29% Similarity=0.390 Sum_probs=93.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCC-CcccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~-~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.++++||++|.++|+|||+|.+++|..+..|+.++.-++ +++..++||||+|.. ++.|..+ +..||+++++-|+||
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~ 154 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIEC 154 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEc
Confidence 579999999999999999999999999999999999987 578888999999987 4777766 789999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCCc
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPNLHF 111 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~~~~ 111 (153)
||++.+||...|+.|+.+|.+.+....
T Consensus 155 SAkt~~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred chhhhccHHHHHHHHHHHHhcCcchhh
Confidence 999999999999999999998765543
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.84 E-value=2.1e-20 Score=134.33 Aligned_cols=96 Identities=22% Similarity=0.404 Sum_probs=84.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-----------ccChH-HHHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-----------QVKAK-QVTFHR 75 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-----------~v~~~-~~~~~~ 75 (153)
.+++.||++||++|+|||+++++||+.+ ..|+..+.....++|+++||||+|+.++ .+..+ +..+++
T Consensus 64 ~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 4678899999999999999999999998 6899999877678999999999999642 24444 678999
Q ss_pred HcCC-ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 76 KKNL-QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 76 ~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.+++ .|+||||++|.||+++|..+++.+.
T Consensus 144 ~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 144 QIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred HcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 9997 5999999999999999999998874
No 12
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.7e-21 Score=137.35 Aligned_cols=99 Identities=30% Similarity=0.422 Sum_probs=92.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++.+||++|.++++|||+|+..+|+.+.+|+.+++.+. +++++++||||+||.+ +.|+.+ +..+|...++.|+++|
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtS 157 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETS 157 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEec
Confidence 789999999999999999999999999999999999997 7899999999999987 666665 7899999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|.++.||+++|..++..|.+..
T Consensus 158 Al~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 158 ALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999998643
No 13
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=3e-20 Score=134.15 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=85.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..+++.||++||++|+|||++++.||+.+ ..|+..+...+++.|+++||||+||.+ +.+..+ +.+
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 45788999999999999999999999997 799999988777899999999999863 235554 789
Q ss_pred HHHHcCC-ceEEecCCCCCC-cHHHHHHHHHHHhC
Q 031782 73 FHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~-v~~lf~~l~~~i~~ 105 (153)
+|+.+++ .|+||||++|.| |+++|..+++.+.+
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 9999995 899999999998 99999999986543
No 14
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=7.1e-21 Score=131.95 Aligned_cols=110 Identities=24% Similarity=0.386 Sum_probs=94.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.+.+.||++++++++|||+|+++||+.++.|..+++... ..+.+++||||+||.+ +.|..+ ...+|+.-|..|+++|
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTS 156 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETS 156 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecc
Confidence 467899999999999999999999999999999998875 5788999999999985 777765 7789999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCcccCCCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 118 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~ 118 (153)
|+++.||.++|+.|.....+..+.+.....+.+
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s 189 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIEHSSQRQRTRSPLS 189 (218)
T ss_pred cccccCHHHHHHHHHHHHHHHhhhcccccCCcC
Confidence 999999999999999888776544444443333
No 15
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-20 Score=133.72 Aligned_cols=100 Identities=29% Similarity=0.438 Sum_probs=90.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.+.++||+++.++|+|||++|..||++...|++.+.... .++-++|||||.||.+ +++..+ +...|++++..|+++
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence 478999999999999999999999999999999999886 3578899999999996 677665 678899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
||++|.||.++|..++..++....
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999999887644
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=5.5e-20 Score=137.40 Aligned_cols=99 Identities=16% Similarity=0.305 Sum_probs=86.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhh-HHHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..+++.||++||++|+|||+++++||.. +..|+..+....++.|+++||||+||.+ +.+..+ +.+
T Consensus 75 ~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 75 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 3578899999999999999999999998 4899999988777899999999999963 345554 789
Q ss_pred HHHHcCC-ceEEecCCCCC-CcHHHHHHHHHHHhCC
Q 031782 73 FHRKKNL-QYYEISAKSNY-NFEKPFLYLARKLAGD 106 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~-~v~~lf~~l~~~i~~~ 106 (153)
+|+.+++ .|+||||++|. ||+++|..++..+.+.
T Consensus 155 ~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 155 LAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 69999999998 8999999999988764
No 17
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=128.95 Aligned_cols=100 Identities=27% Similarity=0.449 Sum_probs=91.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~-~~~~~~~~~~~~~e~S 85 (153)
..|+..||++.+++++|||+|+.+||..+..|++++++.|+.+|.|+||||+|..++. +..+ +..||...|+.+||+|
T Consensus 71 rtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETS 150 (198)
T KOG0079|consen 71 RTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETS 150 (198)
T ss_pred HHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehh
Confidence 4688999999999999999999999999999999999999999999999999999754 4444 7799999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||..+|++..|.-|.+++.+..
T Consensus 151 aKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 151 AKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 18
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=2.6e-20 Score=135.92 Aligned_cols=94 Identities=17% Similarity=0.383 Sum_probs=82.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC--------------------cccC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVK 67 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~--------------------~~v~ 67 (153)
.+++.||++||++|+|||++++.||+.+. .|+..+...+++.|+++||||+||.+ +.+.
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 35678999999999999999999999997 59998887766899999999999863 4455
Q ss_pred hH-HHHHHHHcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 68 AK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 68 ~~-~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
.+ +..+|+.++++|+||||++|.||+++|..+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 54 779999999999999999999999999999864
No 19
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.83 E-value=4e-20 Score=128.73 Aligned_cols=100 Identities=23% Similarity=0.403 Sum_probs=89.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~ 82 (153)
..|+++||+|+-++++|||++|++||+.++.|+.+...+. ..+.+.+||+|+||.. ++|..+ ++.+++.+|+.|+
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FV 151 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFV 151 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEE
Confidence 3689999999999999999999999999999999988775 2455679999999985 788876 7899999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|+||++|.||++.|..|.+.+....
T Consensus 152 ETSak~g~NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 152 ETSAKNGCNVEEAFDMLAQEIFQAI 176 (213)
T ss_pred EecccCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997643
No 20
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=1.9e-19 Score=129.38 Aligned_cols=101 Identities=28% Similarity=0.402 Sum_probs=87.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..||++||++|+|||++++.||+.+..|+..+.... .++|+++||||+|+.+ +.+... ...++..++..|++||
T Consensus 44 ~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~S 123 (176)
T PTZ00099 44 SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETS 123 (176)
T ss_pred hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEE
Confidence 467889999999999999999999999999999887654 5789999999999974 455544 5677888888899999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNL 109 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~ 109 (153)
|++|.||+++|.+|++.++...+.
T Consensus 124 Ak~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 124 AKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999875544
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=9.5e-20 Score=131.05 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=84.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..+++.||++||++|+|||+++++||+.+ ..|+..+...+++.|+++||||+||.+ +.+..+ +.+
T Consensus 63 ~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH
Confidence 45788899999999999999999999996 799999988877899999999999953 235544 779
Q ss_pred HHHHcCC-ceEEecCCCCCC-cHHHHHHHHHHHh
Q 031782 73 FHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLA 104 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~-v~~lf~~l~~~i~ 104 (153)
+++.+++ .|+||||++|+| |+++|..+++..+
T Consensus 143 ~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 143 IAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 9999996 799999999995 9999999998654
No 22
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.82 E-value=6.1e-20 Score=129.94 Aligned_cols=99 Identities=28% Similarity=0.576 Sum_probs=88.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCC---cccChH-HHHHHHHcC-C
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKN-L 79 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~---~~v~~~-~~~~~~~~~-~ 79 (153)
+.-.||++||++++|||++++.||+.+..|.+++.... ...|+|++|||+|+.+ +.++.. +++|+...| +
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gni 153 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNI 153 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCc
Confidence 45689999999999999999999999999999988764 4789999999999975 778776 778998886 9
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
+|||+|||.+.||+++|..+++.++....
T Consensus 154 pyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 154 PYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred eeEEecccccccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999987543
No 23
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=1.9e-18 Score=127.43 Aligned_cols=142 Identities=74% Similarity=1.137 Sum_probs=122.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.++..|+++++++++|||+++..||..+..|+..+.....++|+++|+||+|+.++.+..+...+++..++.++++||++
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKS 152 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCC
Confidence 35678999999999999999999999999999998877678999999999999765555555567788889999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHHHHHHHHHHHHHHhCCCCCCCCcc
Q 031782 89 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 150 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 150 (153)
|.|++++|.+|++.+......-....+...+....++......+..-+.+.+..|.|+++|+
T Consensus 153 ~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214 (215)
T ss_pred CCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCC
Confidence 99999999999999988777666666776676677888788888888899999999998875
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.82 E-value=2.4e-19 Score=130.15 Aligned_cols=98 Identities=24% Similarity=0.489 Sum_probs=84.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccCh-HHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~-~~~~ 72 (153)
..+++.||++||++|+|||++++.||+.+. .|+..+....+++|+++||||+||.+. .+.. ++..
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 357889999999999999999999999997 698888776668999999999999642 1333 3678
Q ss_pred HHHHcC-CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++.++ +.|++|||++|.||+++|.++++.+..
T Consensus 145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 899888 589999999999999999999998865
No 25
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.1e-20 Score=126.69 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=98.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+++||++|.++++|||+++++||+.+..|+..++... +++.++++|||.||.+ +++.-. ...|+.++.+.++++|
T Consensus 73 SVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETS 152 (214)
T KOG0086|consen 73 SVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETS 152 (214)
T ss_pred HHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeec
Confidence 578999999999999999999999999999999998875 6888999999999985 677654 6789999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHH
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 127 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 127 (153)
|++|+||++.|-..++.|+.+............. .|+....
T Consensus 153 a~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gs-GIQYGda 193 (214)
T KOG0086|consen 153 ALTGENVEEAFLKCARTILNKIESGELDPERMGS-GIQYGDA 193 (214)
T ss_pred ccccccHHHHHHHHHHHHHHHHhhcCCCHHHccc-ccccchh
Confidence 9999999999999999998876555443322222 3444443
No 26
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=3.6e-20 Score=125.23 Aligned_cols=99 Identities=21% Similarity=0.440 Sum_probs=90.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+.+||++||+++++||++|..||+.++.|+.++.++. ..+.+.++|||||+.+ +.+..+ +..+++.++++|+++|
T Consensus 62 svt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmets 141 (192)
T KOG0083|consen 62 SVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETS 141 (192)
T ss_pred hhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceecc
Confidence 578899999999999999999999999999999999886 5688899999999964 767655 8899999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|++|.||+-.|..|+..+.+..
T Consensus 142 aktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 142 AKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred ccccccHhHHHHHHHHHHHHhc
Confidence 9999999999999999987643
No 27
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.3e-20 Score=131.21 Aligned_cols=142 Identities=72% Similarity=1.116 Sum_probs=133.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
-.+..-||-++.++|++||++.+-++..+.+|...+.+.+.++|+|++|||.|..++.+......+.+..+++++++||+
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSak 152 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAK 152 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecc
Confidence 45677899999999999999999999999999999999998999999999999988776666677888889999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHHHHHHHHHHHHHHhCCCCCCCCc
Q 031782 88 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD 149 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 149 (153)
++.|.+..|.++++.+....+......+.+.|++..++-....+.+..+..++..|+|+.||
T Consensus 153 sn~NfekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~ 214 (216)
T KOG0096|consen 153 SNYNFERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDD 214 (216)
T ss_pred cccccccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988
No 28
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=5.2e-19 Score=125.56 Aligned_cols=99 Identities=80% Similarity=1.271 Sum_probs=87.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.++..|++++|++|+|||+++++||..+..|+..+.....++|+++||||+|+.++.+..+...+++..++.+++|||++
T Consensus 64 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 64 GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKS 143 (166)
T ss_pred cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCC
Confidence 45678999999999999999999999999999999888768999999999999865555555667777788999999999
Q ss_pred CCCcHHHHHHHHHHHhCCC
Q 031782 89 NYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~~~ 107 (153)
|.|++++|.+|++.+.+..
T Consensus 144 ~~~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 144 NYNFEKPFLWLARKLLGNP 162 (166)
T ss_pred CCChHHHHHHHHHHHHhcc
Confidence 9999999999999997644
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=3.8e-19 Score=127.03 Aligned_cols=99 Identities=29% Similarity=0.444 Sum_probs=86.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..||+++|++|+|||++++.||..+..|...+.+.. .++|+++||||+|+.+ +.+..+ ...+++.++++|++
T Consensus 64 ~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e 143 (172)
T cd04141 64 TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFE 143 (172)
T ss_pred HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEE
Confidence 3578899999999999999999999999999988777642 5799999999999964 556654 67888889999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
|||++|.||+++|.+|++.+.+.
T Consensus 144 ~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.80 E-value=1.4e-18 Score=122.81 Aligned_cols=98 Identities=30% Similarity=0.439 Sum_probs=85.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+++.|++++|++|+|||+++++||+.+..|+..+.... .+.|+++||||+|+.+ +.+..+ ...+++..++.+++|
T Consensus 65 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T cd04122 65 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLEC 144 (166)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEE
Confidence 3567889999999999999999999999999998887664 5789999999999975 445543 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|..+++.+.+
T Consensus 145 Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 145 SAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 31
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.8e-19 Score=122.93 Aligned_cols=99 Identities=30% Similarity=0.455 Sum_probs=89.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.++..||++|-+++++||+++..||-.+.+|+..++.+ |++..+|++|||+||.+ +.|+.. ...++.++|++|||+
T Consensus 82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 57889999999999999999999999999999998876 57888999999999997 666655 678999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||.+|.||++..+.|+..++++.
T Consensus 162 SA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999998888654
No 32
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=3.2e-18 Score=127.03 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=83.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC--------------------ccc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--------------------RQV 66 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~--------------------~~v 66 (153)
..++..||+++|++|+|||++++.||..+..|+..+.... .++|+++||||+|+.+ +.+
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v 137 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV 137 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC
Confidence 3467889999999999999999999999998887776543 4789999999999864 445
Q ss_pred ChH-HHHHHHHcC--------------CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 67 KAK-QVTFHRKKN--------------LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 67 ~~~-~~~~~~~~~--------------~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
..+ +..++++++ ++|+||||++|.||+++|..+++.+..
T Consensus 138 ~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 138 TLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred CHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 444 668888876 679999999999999999999988874
No 33
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.78 E-value=2.3e-18 Score=123.37 Aligned_cols=95 Identities=17% Similarity=0.376 Sum_probs=80.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~~ 73 (153)
.++..||+++|++|+|||+++++||+.+. .|+..+....+++|+++||||+|+.+ +.+..+ +..+
T Consensus 64 ~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 64 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 46788999999999999999999999997 59988877666899999999999854 233433 5678
Q ss_pred HHHcC-CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 74 HRKKN-LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 74 ~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++..+ ..|++|||++|.|++++|..+++.+
T Consensus 144 a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 144 ARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 88887 6899999999999999999998754
No 34
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.78 E-value=2.1e-18 Score=121.80 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=78.8
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCC---CcccChH-HHHHHHHc-CCceEEe
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEI 84 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~---~~~v~~~-~~~~~~~~-~~~~~e~ 84 (153)
..|++++|++++|||+++++||+.+..|+..+.... .++|+++||||+|+. .+.+..+ +.++++.. ++.|++|
T Consensus 60 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 60 AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEE
Confidence 568899999999999999999999999999988774 578999999999985 2455554 56788776 4899999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~ 102 (153)
||++|.||+++|..+++.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999865
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=3.9e-18 Score=120.33 Aligned_cols=94 Identities=23% Similarity=0.419 Sum_probs=82.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.+++.|++++|++++|||+++++||+.+..|+..+.... .+.|+++||||.|+.+ +.+..+ ...+++..+++|++||
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 143 (161)
T cd04117 64 TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETS 143 (161)
T ss_pred hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 357889999999999999999999999999999887765 4789999999999975 555544 6788888899999999
Q ss_pred CCCCCCcHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARK 102 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~ 102 (153)
|++|.||+++|.+|++.
T Consensus 144 a~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 144 ACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999864
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=5.2e-18 Score=121.24 Aligned_cols=98 Identities=30% Similarity=0.431 Sum_probs=85.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++|+|||+++++||..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++..++++++
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFE 156 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEE
Confidence 3567889999999999999999999999999999887753 4789999999999975 455544 67889999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|++++|.+|++.+.+
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=4.6e-18 Score=123.09 Aligned_cols=98 Identities=21% Similarity=0.351 Sum_probs=82.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~~ 73 (153)
.+++.||+++|++|+|||+++++||+.+. .|+..+.....+.|+++||||+|+.+. .+..+ +..+
T Consensus 63 ~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (189)
T cd04134 63 RLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAV 142 (189)
T ss_pred ccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 46778999999999999999999999886 699888877678999999999999642 12222 5567
Q ss_pred HHHcC-CceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 74 HRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 74 ~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+...+ +.|++|||++|.||+++|.+|++.+...
T Consensus 143 ~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 143 AKRINALRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred HHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 77777 7899999999999999999999999753
No 38
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.77 E-value=7.4e-18 Score=125.22 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=85.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~ 72 (153)
..+++.||+++|++|+|||+++++||+.+ ..|..++...+++.|+++||||+||... .+..+ +..
T Consensus 63 ~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~ 142 (222)
T cd04173 63 DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV 142 (222)
T ss_pred HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH
Confidence 45788999999999999999999999999 5688877777778999999999999641 14443 778
Q ss_pred HHHHcCC-ceEEecCCCCCC-cHHHHHHHHHHHhCCCC
Q 031782 73 FHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDPN 108 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~-v~~lf~~l~~~i~~~~~ 108 (153)
+++..|. .|+||||+++.| |+++|..++.....+..
T Consensus 143 ~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 143 LAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred HHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 9999995 899999999995 99999999998776543
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.77 E-value=6.6e-18 Score=118.60 Aligned_cols=97 Identities=30% Similarity=0.525 Sum_probs=88.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC-CCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..+++++|++|+|||+++++||..+..|+..+..... +.|+++||||+|+.+ +.+..+ +..+++.++++|++|
T Consensus 62 ~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~ 141 (162)
T PF00071_consen 62 DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEV 141 (162)
T ss_dssp HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEE
Confidence 34678899999999999999999999999999999998875 699999999999986 667655 778999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||+++.||.++|..+++.+.
T Consensus 142 Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 142 SAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp BTTTTTTHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999875
No 40
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.77 E-value=3.4e-18 Score=122.36 Aligned_cols=95 Identities=20% Similarity=0.394 Sum_probs=80.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~ 72 (153)
..+++.|++++|++|+|||+++++||..+. .|+..+.....+.|+++||||+|+.+. .+..+ +..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 357788999999999999999999999996 698888776668999999999999531 24443 668
Q ss_pred HHHHcC-CceEEecCCCCCCcHHHHHHHHHH
Q 031782 73 FHRKKN-LQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 73 ~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
+++.++ +.|++|||++|+|++++|..+++.
T Consensus 143 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 143 MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 888888 589999999999999999999864
No 41
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.77 E-value=6.5e-18 Score=121.86 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=82.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC-CCcEEEEeeCCCCCC-------cccChHHHHHHHHcCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNL 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~p~vlv~nK~Dl~~-------~~v~~~~~~~~~~~~~ 79 (153)
..++..|+++||++++|||++++.||..+..|+..+..... ..| ++||||+|+.. +.+..+...+++.++.
T Consensus 63 ~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~ 141 (182)
T cd04128 63 INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA 141 (182)
T ss_pred HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC
Confidence 35778899999999999999999999999999999887643 455 68999999952 1122335678888899
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+++|||++|.|++++|.++++.+...
T Consensus 142 ~~~e~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 142 PLIFCSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999764
No 42
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=7.7e-18 Score=122.91 Aligned_cols=104 Identities=24% Similarity=0.374 Sum_probs=89.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..++..|+++++++++|||+++++||..+..|+..+.......|+++||||+|+.+ ..+..+ ...+++..+.+++++|
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 148 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETS 148 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 35678999999999999999999999999999999887777899999999999975 344433 5678888889999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCc
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNLHF 111 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~~~ 111 (153)
|++|.||+++|.+|++.+........
T Consensus 149 a~~~~gi~~lf~~l~~~~~~~~~~~~ 174 (199)
T cd04110 149 AKENINVEEMFNCITELVLRAKKDNL 174 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999987554443
No 43
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1.1e-17 Score=121.11 Aligned_cols=102 Identities=27% Similarity=0.439 Sum_probs=86.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~ 81 (153)
..++..||+++|++|+|||+++++||+.+..|+..+.... .+.|+++||||+|+.+ +.+... ...+++.+++.+
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~ 140 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEF 140 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEE
Confidence 3467889999999999999999999999999998887652 4689999999999964 455544 567888889999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCCCCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGDPNL 109 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 109 (153)
+++||++|.|++++|.++++.+..+...
T Consensus 141 ~e~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 141 IEASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988754433
No 44
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.77 E-value=1e-17 Score=122.28 Aligned_cols=99 Identities=26% Similarity=0.447 Sum_probs=89.6
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceE
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~ 82 (153)
...+...|++++|++++||+++++.||+.+..++..+.+.. ..+|+++||||+|+.. +.|+.+ +..++..+++.|+
T Consensus 64 ~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~ 143 (196)
T KOG0395|consen 64 FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFI 143 (196)
T ss_pred ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEE
Confidence 35678899999999999999999999999999999885542 5789999999999986 788776 7899999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|+||+.+.+|+++|..|++.+..
T Consensus 144 E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 144 ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EeeccCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999976
No 45
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=9.1e-18 Score=122.58 Aligned_cols=100 Identities=28% Similarity=0.425 Sum_probs=85.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcC-C
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-L 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~-~ 79 (153)
..+++.||+++|++|+|||+++++||+.+..|+..+.... .++|+++||||+|+.+ +.+..+ ...+++..+ .
T Consensus 64 ~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (201)
T cd04107 64 GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFI 143 (201)
T ss_pred hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCc
Confidence 3567899999999999999999999999999998876542 4789999999999973 444444 678888888 6
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.+++|||++|.|++++|.+|++.+....
T Consensus 144 ~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 144 GWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999997653
No 46
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.76 E-value=1.3e-17 Score=123.19 Aligned_cols=99 Identities=24% Similarity=0.371 Sum_probs=86.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~ 81 (153)
..+...||++||++|+|||+++++||+.+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.+++.+
T Consensus 64 ~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~ 143 (215)
T cd04109 64 GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMES 143 (215)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEE
Confidence 3567789999999999999999999999999999988764 2468999999999974 555544 667888889999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++||++|+|++++|.+|++.+...
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=1.8e-17 Score=117.16 Aligned_cols=98 Identities=23% Similarity=0.411 Sum_probs=84.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++++|+.+..|+..+.... ...|+++|+||+|+.+ +.+..+ ..+++..++++++++
T Consensus 64 ~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01865 64 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEA 143 (165)
T ss_pred HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999987765 4789999999999975 344433 567888888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.++++.+..
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 144 SAKENINVKQVFERLVDIICD 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 48
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.1e-18 Score=118.73 Aligned_cols=98 Identities=27% Similarity=0.481 Sum_probs=88.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..|+.+||+.|+++|+|||++-.+||+-+.+|+.++.++. ..+-.|+||||+|+.+ ++++.+ +++|.+.....|+++
T Consensus 70 rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyflet 149 (213)
T KOG0095|consen 70 RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLET 149 (213)
T ss_pred HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhh
Confidence 3689999999999999999999999999999999999985 5677899999999986 577776 778888888889999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||+...||+.+|..++..+..
T Consensus 150 sakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 150 SAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred cccchhhHHHHHHHHHHHHHH
Confidence 999999999999999877754
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.76 E-value=1.8e-17 Score=116.84 Aligned_cols=97 Identities=26% Similarity=0.463 Sum_probs=83.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+++.|++++|++++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+... ...+++.+++++++
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLE 142 (164)
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEE
Confidence 3577889999999999999999999999999998887653 5799999999999975 344443 45778888899999
Q ss_pred ecCCCCCCcHHHHHHHHHHHh
Q 031782 84 ISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
|||++|.|++++|.++++.+.
T Consensus 143 ~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 143 TSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred eeCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999998764
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=2.3e-17 Score=116.80 Aligned_cols=98 Identities=26% Similarity=0.456 Sum_probs=85.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..++++||++|+|||++++++|..+..|+..+.... .+.|+++||||+|+.+ +.+..+ ...++..+++++++|
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLET 145 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 4467789999999999999999999999999999988764 4789999999999975 444443 567888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.++++.+..
T Consensus 146 Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 146 SAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 51
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=3.1e-17 Score=115.81 Aligned_cols=97 Identities=30% Similarity=0.479 Sum_probs=84.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||+++++||..+..|+..+.... .+.|+++|+||+|+.. +.+..+ ...+++.++++++++
T Consensus 65 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (166)
T cd01869 65 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLET 144 (166)
T ss_pred HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEE
Confidence 4567889999999999999999999999999999988765 5789999999999865 444443 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||++|.|++++|..+++.+.
T Consensus 145 Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 145 SAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred ECCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 52
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.75 E-value=1.7e-17 Score=117.83 Aligned_cols=98 Identities=21% Similarity=0.367 Sum_probs=83.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~ 72 (153)
..+++.+++++|++|+|||+++++||+.+. .|+..+.....+.|+++||||+|+... .+..+ ...
T Consensus 60 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (174)
T smart00174 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEA 139 (174)
T ss_pred chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHH
Confidence 346788999999999999999999999986 599988877678999999999998641 13333 567
Q ss_pred HHHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++..+. .+++|||++|.|++++|..+++.+.+
T Consensus 140 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 140 LAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred HHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 8888885 89999999999999999999988754
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.75 E-value=2.4e-17 Score=115.66 Aligned_cols=96 Identities=28% Similarity=0.505 Sum_probs=82.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.++.++++
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd04136 63 TAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYE 142 (163)
T ss_pred chHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEE
Confidence 3567889999999999999999999999999998887653 4799999999999964 444443 55677888889999
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
+||++|.|++++|.++++.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 143 TSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998765
No 54
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=4e-17 Score=117.83 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=86.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..+++++|++|+|||++++.||..+..|+..+.... ...|+++||||+|+.+ +.+... ...+++..+++++++|
T Consensus 64 ~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 143 (188)
T cd04125 64 SLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETS 143 (188)
T ss_pred hhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEe
Confidence 467889999999999999999999999999999988764 4689999999999974 445544 5678888889999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|++|.|++++|.+|++.+..+.
T Consensus 144 a~~~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 144 AKQSINVEEAFILLVKLIIKRL 165 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999997654
No 55
>PTZ00369 Ras-like protein; Provisional
Probab=99.74 E-value=3.1e-17 Score=118.73 Aligned_cols=98 Identities=23% Similarity=0.442 Sum_probs=84.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.++..|++++|++++|||+++++||+.+..|+..+.+.. .++|+++|+||+|+.+ +.+... ...+++.++.++++|
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 147 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLET 147 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEe
Confidence 467789999999999999999999999999998887653 4789999999999864 444443 567778888899999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|++.+.+.
T Consensus 148 Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 148 SAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 56
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=4.3e-17 Score=114.49 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=84.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc------CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~------~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~ 79 (153)
..+++.|++++|++|+|||++++++|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++...++
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF 142 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC
Confidence 3578899999999999999999999999999999988764 3589999999999973 444444 5577888889
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+++++||++|.|++++|.+|++.+.
T Consensus 143 ~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 143 KYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999998875
No 57
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.74 E-value=3.8e-17 Score=115.19 Aligned_cols=97 Identities=29% Similarity=0.453 Sum_probs=83.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..+++.|++++|++|+|||++++.+|..+..|+..+.....++|+++|+||+|+... +..+...++...+++++++||+
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~ 141 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAA 141 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCC
Confidence 357789999999999999999999999999999999877668999999999998532 2233456777778899999999
Q ss_pred CCCCcHHHHHHHHHHHhC
Q 031782 88 SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~ 105 (153)
+|.|++++|+.+++.+..
T Consensus 142 ~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 142 DGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988765
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=5.4e-17 Score=119.64 Aligned_cols=100 Identities=22% Similarity=0.365 Sum_probs=86.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+++.||+++|++|+|||+++++||..+..|+..+.... ...|+++|+||+|+.+ +.+..+ ...+++.+++.+++
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 145 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIE 145 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEE
Confidence 4567899999999999999999999999999999887653 3578899999999975 455544 66888889999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+||++|.|++++|.+|++.+.+..
T Consensus 146 ~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 146 TSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.74 E-value=4.4e-17 Score=115.15 Aligned_cols=95 Identities=26% Similarity=0.406 Sum_probs=81.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~ 81 (153)
..++..+++++|++|+|||+++++||..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..+++.|
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 142 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAF 142 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcE
Confidence 3467889999999999999999999999999988776642 4789999999999975 555544 567788888999
Q ss_pred EEecCCCCCCcHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
++|||++|.|++++|++|+..
T Consensus 143 ~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 143 METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred EEeecCCCCCHHHHHHHHHhc
Confidence 999999999999999999753
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=5e-17 Score=114.01 Aligned_cols=95 Identities=24% Similarity=0.482 Sum_probs=83.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..++..|++++|++++|||++++++|..+..|+..+.....++|+++|+||+|+.. +.+..+ ...+++..+++++++|
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 144 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTS 144 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 35678899999999999999999999999999999887667899999999999964 455544 6678888999999999
Q ss_pred CCCCCCcHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARK 102 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~ 102 (153)
|++|.|++++|.+|+..
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 145 VKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999764
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=6.6e-17 Score=112.93 Aligned_cols=97 Identities=25% Similarity=0.461 Sum_probs=83.5
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEE
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e 83 (153)
...++..|+++++++++|||++++.+|..+..|+..+.+.. .+.|+++|+||+|+.++.+... ...+++..++++++
T Consensus 62 ~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (162)
T cd04138 62 YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIE 141 (162)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEE
Confidence 34577889999999999999999999999999998887763 4789999999999976555443 56777888899999
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
+||++|.|++++|.++++.+
T Consensus 142 ~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 142 TSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 62
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.73 E-value=5.6e-17 Score=114.05 Aligned_cols=96 Identities=25% Similarity=0.438 Sum_probs=81.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+.. +.+.. +...++...++++++
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFME 142 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEE
Confidence 3467889999999999999999999999999998887653 4799999999999864 34443 356777778889999
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
|||++|.|++++|.++++.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 143 TSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999998764
No 63
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.8e-17 Score=113.26 Aligned_cols=99 Identities=29% Similarity=0.453 Sum_probs=89.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++++||++|.++++|||++.+.++..+..|+...+... ++..++++|||.||.. +.+..+ ...|+.++|+-|+++|
T Consensus 75 avtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~s 154 (215)
T KOG0097|consen 75 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEAS 154 (215)
T ss_pred HHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEec
Confidence 578999999999999999999999999999998888774 5778999999999985 777766 6789999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|++|+||++.|-..+++|.++.
T Consensus 155 aktg~nvedafle~akkiyqni 176 (215)
T KOG0097|consen 155 AKTGQNVEDAFLETAKKIYQNI 176 (215)
T ss_pred ccccCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 64
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.73 E-value=9.9e-17 Score=117.22 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=80.8
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC-cccChH-HHHHHH-HcCCceEE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHR-KKNLQYYE 83 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~-~~~~~~~e 83 (153)
...+++++|++|+|||+++++||+.+..|+..+.+.. .++|+++|+||+|+.. +.+..+ ...++. .++++|++
T Consensus 74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence 5567899999999999999999999999998887652 5799999999999965 444444 445544 56899999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|||++|.|++++|..+++.+..+.
T Consensus 154 ~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 154 CSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred ecCCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999887543
No 65
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.73 E-value=7e-17 Score=113.97 Aligned_cols=96 Identities=20% Similarity=0.385 Sum_probs=82.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
.....+++++|++|+|||+++++||+.+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++..+.+|++
T Consensus 63 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 142 (165)
T cd04146 63 EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFE 142 (165)
T ss_pred chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEE
Confidence 456789999999999999999999999999988877653 3799999999999864 455544 56788888999999
Q ss_pred ecCCCCC-CcHHHHHHHHHHHh
Q 031782 84 ISAKSNY-NFEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~~~~-~v~~lf~~l~~~i~ 104 (153)
+||++|. ||+++|..+++.+.
T Consensus 143 ~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 143 VSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred eCCCCCchhHHHHHHHHHHHHh
Confidence 9999995 99999999998764
No 66
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.73 E-value=5.5e-17 Score=116.75 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=84.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-----ccCh-HHHHHHHHcCC-
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-----QVKA-KQVTFHRKKNL- 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-----~v~~-~~~~~~~~~~~- 79 (153)
..+++.|++++|++|+|||+++++||+.+. .|+..+.....+.|+++||||+|+... .+.. +...++..++.
T Consensus 63 ~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~ 142 (187)
T cd04132 63 DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAF 142 (187)
T ss_pred HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCc
Confidence 356788999999999999999999999986 598888766668999999999998642 2333 35678888887
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++++|||++|.|++++|..+++.+....
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999997654
No 67
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=1.1e-16 Score=115.97 Aligned_cols=100 Identities=23% Similarity=0.431 Sum_probs=86.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||+++++||+.+..|+..+.... .++|+++|+||+|+.. +.+.. +...++..++.+|+++
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~ 143 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMET 143 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEE
Confidence 3467889999999999999999999999999999988775 4789999999999964 44544 3667888888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.|++++|.+|++.+....
T Consensus 144 Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 144 SAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999997653
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=8.6e-17 Score=113.30 Aligned_cols=96 Identities=30% Similarity=0.483 Sum_probs=83.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC-CCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+++.|+++++++|+|||++++.+|..+..|+..+.+... +.|+++|+||+|+.. +.+..+ ...++...++.++++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (165)
T cd01868 66 RAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIET 145 (165)
T ss_pred HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEE
Confidence 45678899999999999999999999999999999887753 589999999999975 444443 567788788999999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||++|.|++++|++++..+
T Consensus 146 Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 146 SALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999999999999998775
No 69
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.72 E-value=2.2e-16 Score=117.17 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=85.3
Q ss_pred hhHhhhh-cCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 10 IILICSI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 10 ~~~~~~~-~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
+...|++ ++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..++++|++|
T Consensus 64 ~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 143 (221)
T cd04148 64 TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIET 143 (221)
T ss_pred HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEe
Confidence 4566777 9999999999999999999999998887753 4799999999999964 555544 567888888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~~~ 110 (153)
||++|.||+++|+++++.+.......
T Consensus 144 SA~~~~gv~~l~~~l~~~~~~~~~~~ 169 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQIRLRRDSK 169 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999997544433
No 70
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=1.2e-16 Score=118.20 Aligned_cols=100 Identities=29% Similarity=0.404 Sum_probs=87.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|+++++++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~ 154 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLET 154 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999888764 4799999999999964 455544 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.|++++|.+++..+.+..
T Consensus 155 SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987643
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=1.9e-16 Score=112.26 Aligned_cols=98 Identities=28% Similarity=0.459 Sum_probs=85.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++.||..+..|+..+.... .++|+++|+||.|+.+ +.+..+ ...++...++.++++
T Consensus 67 ~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (168)
T cd01866 67 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999887764 5799999999999974 444444 567888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||+++.|++++|.++++.+.+
T Consensus 147 Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 147 SAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 72
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=1.2e-16 Score=113.91 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=82.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCc-cc--Ch-HHHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV--KA-KQVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~-~v--~~-~~~~~~~~~~~~~ 81 (153)
..++..||+++|++++|||+++++||..+..|+..+.+.. ...|+++|+||+|+... .. .. +...+++.++..+
T Consensus 63 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T cd04108 63 KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEY 142 (170)
T ss_pred HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeE
Confidence 3477899999999999999999999999999999876553 34779999999998642 22 22 3557788888899
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++||++|.|++++|..|++.+..
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.72 E-value=1.8e-16 Score=111.50 Aligned_cols=96 Identities=24% Similarity=0.471 Sum_probs=82.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+...+++++|++++|||++++++|..+..|+..+.....++|+++|+||+|+.+ +.+... ...++..+++++++||
T Consensus 66 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04101 66 SDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 34678899999999999999999999999999999887755799999999999965 444443 4567777788999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|++|.|++++|..+++.+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 146 ALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCCChHHHHHHHHHHh
Confidence 999999999999999875
No 74
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=1.3e-16 Score=113.02 Aligned_cols=96 Identities=25% Similarity=0.484 Sum_probs=82.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCCcccChH-HHHHHHHcC-Cc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~-~~ 80 (153)
..++..|++++|++++|||+++++||+.+..|+..+.... .++|+++|+||+|+..+.+..+ ..++++.++ ..
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYP 147 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCe
Confidence 3467889999999999999999999999999998876643 3689999999999976555544 678888888 57
Q ss_pred eEEecCCCCCCcHHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++++||++|.|+.++|..+++.+
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998753
No 75
>PLN03108 Rab family protein; Provisional
Probab=99.72 E-value=1.7e-16 Score=116.90 Aligned_cols=100 Identities=28% Similarity=0.433 Sum_probs=86.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+++.|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.++++++++
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA 148 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEE
Confidence 3467899999999999999999999999999998877654 5799999999999975 445544 678888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||+++.||+++|.++++.+.++.
T Consensus 149 Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999997654
No 76
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=1.5e-16 Score=112.95 Aligned_cols=96 Identities=26% Similarity=0.468 Sum_probs=83.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+...|++++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+... ...+++..+++|++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 145 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFE 145 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEE
Confidence 3578899999999999999999999999999998888764 5799999999999975 455544 66788888899999
Q ss_pred ecCCC---CCCcHHHHHHHHHHH
Q 031782 84 ISAKS---NYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~---~~~v~~lf~~l~~~i 103 (153)
|||++ +.|++++|..+++.+
T Consensus 146 ~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 146 TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EeccCCcCCCCHHHHHHHHHHHh
Confidence 99999 889999999999876
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.71 E-value=1.9e-16 Score=111.15 Aligned_cols=96 Identities=30% Similarity=0.505 Sum_probs=82.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.+.. .++|+++|+||+|+.. +.+.. +...+++.+++++++
T Consensus 64 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04145 64 SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIE 143 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEE
Confidence 3467889999999999999999999999999998887652 4789999999999975 34444 356778888899999
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
+||++|.|++++|++|++.+
T Consensus 144 ~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 144 TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998765
No 78
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=2.6e-16 Score=110.64 Aligned_cols=96 Identities=25% Similarity=0.467 Sum_probs=82.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.++..|++++|++++|||++++++|..+..|...+.+.. .+.|+++|+||+|+.. +.+..+ ...+++..+.++++|
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T smart00173 63 AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLET 142 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEe
Confidence 567889999999999999999999999999988876653 4789999999999975 444444 567888888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||++|.|++++|.+|++.+.
T Consensus 143 Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 143 SAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=2.9e-16 Score=110.18 Aligned_cols=96 Identities=29% Similarity=0.482 Sum_probs=83.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+++.+++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++.++++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLET 142 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEE
Confidence 3567899999999999999999999999999999887654 5899999999999975 444444 567888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||+++.|++++|.++++.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 80
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=4.4e-16 Score=109.85 Aligned_cols=95 Identities=31% Similarity=0.488 Sum_probs=81.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCC-ceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~-~~~e 83 (153)
..++..+++++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+.. ....+++.++. .+++
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 145 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLE 145 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 4567889999999999999999999999999999987753 5789999999999975 34443 36678888875 6899
Q ss_pred ecCCCCCCcHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~ 102 (153)
+||++|.|++++|+++++.
T Consensus 146 ~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 146 TSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 81
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.69 E-value=5.3e-16 Score=112.24 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=84.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-----cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-----~~v~~~-~~~~~~~~~~~~ 81 (153)
..++..|++++|++++|||++++.||+.+..|+..+.....+.|+++|+||+|+.+ +.+... ...++..+++++
T Consensus 64 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (193)
T cd04118 64 EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQH 143 (193)
T ss_pred hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeE
Confidence 35677899999999999999999999999999999887655799999999999863 223332 457788888999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+++||++|.|++++|+++++.+.+..
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654
No 82
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.69 E-value=2.9e-17 Score=116.17 Aligned_cols=99 Identities=25% Similarity=0.424 Sum_probs=89.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e~S 85 (153)
-.|++.||++|.+.++||+.+|+.||+.+..|++++...+.++|.|+|.||+||.+ .++.. +.+.+++..++.++.+|
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtS 162 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTS 162 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhh
Confidence 36899999999999999999999999999999999999999999999999999986 44444 36789999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
++...||.++|..|+..+.+.
T Consensus 163 vked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 163 VKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999888653
No 83
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.69 E-value=2.8e-16 Score=111.94 Aligned_cols=93 Identities=19% Similarity=0.378 Sum_probs=78.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~~ 73 (153)
.+++.|++++|++|+|||++++.||+.+. .|+..+.....+.|+++|+||+|+.. +.+..+ ...+
T Consensus 63 ~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 63 KLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred cccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 45678999999999999999999999985 69888876555799999999999853 234443 5688
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHH
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++.++. .|++|||++|.||+++|+.+.-
T Consensus 143 a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 143 AEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 888887 8999999999999999988763
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=7.2e-16 Score=108.08 Aligned_cols=98 Identities=32% Similarity=0.519 Sum_probs=85.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..+++++|++|+|||++++.+++.+..|+..+..+. .++|+++|+||+|+.. +.+..+ ...+++.++++++++
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~ 142 (164)
T smart00175 63 RSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFET 142 (164)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEE
Confidence 3577889999999999999999999999999999887765 5799999999999875 444444 567888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.++.+.+..
T Consensus 143 Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 143 SAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 85
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=5.2e-16 Score=110.27 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=78.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHHHcC------C
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN------L 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~------~ 79 (153)
..++..|++++|++++|||.+++.+|..+..|+..+.... .+.|+++|+||+|+.+.....+...++...+ +
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 136 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSW 136 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcE
Confidence 3467789999999999999999999999999988876532 4689999999999965322223444443222 2
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.+++|||++|.||+++|.+|++.+....
T Consensus 137 ~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 137 YIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred EEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 5789999999999999999998886653
No 86
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=5.8e-16 Score=111.55 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=74.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC------
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------ 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~------ 79 (153)
..+++.||+++|++|+|||++++++|.....|+..+... ..++|+++|+||+|+.+... ...+.+..++
T Consensus 75 ~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRQR 151 (181)
T ss_pred HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HHHHHHHhCccccCCC
Confidence 357788999999999999999999999888877766432 25799999999999875422 2233333332
Q ss_pred --ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 80 --QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 80 --~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+++|||++|+||.++|++|+..+.++
T Consensus 152 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 152 HWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 356899999999999999999887653
No 87
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=1.4e-15 Score=106.59 Aligned_cols=95 Identities=33% Similarity=0.481 Sum_probs=82.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+...+++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+....+..+ ...++...+++++++
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIET 142 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 3556888999999999999999999999999999888764 5789999999999986554443 567888889999999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~ 102 (153)
||++|.|+++++..+...
T Consensus 143 Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 143 SAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998865
No 88
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.67 E-value=1.2e-15 Score=110.17 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=81.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-----------cccCh-HHHHHHHH
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-----------RQVKA-KQVTFHRK 76 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-----------~~v~~-~~~~~~~~ 76 (153)
+.+.+++++|+++++||+++.++|..+. .|+..+.....++|+++||||+|+.+ +.+.. +...+++.
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 4456789999999999999999999996 69999887766899999999999853 12222 35577888
Q ss_pred cCC-ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 77 KNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 77 ~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++. .|++|||++|.|++++|.++++.+....
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 884 7999999999999999999998886543
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.66 E-value=1.2e-15 Score=108.36 Aligned_cols=95 Identities=19% Similarity=0.320 Sum_probs=79.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccCh-HHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~-~~~~~ 73 (153)
.++..+++++|++++|||++++.+|+.+. .|+..+.....+.|+++|+||+|+.+. .+.. ++..+
T Consensus 63 ~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (174)
T cd04135 63 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKL 142 (174)
T ss_pred ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 35677899999999999999999999986 688877765568999999999998642 2333 35678
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHH
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++..+. .|++|||++|.|++++|..++..+
T Consensus 143 ~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 143 AKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 888885 799999999999999999998876
No 90
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=6.5e-16 Score=109.91 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=71.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHHH-----HcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~-----~~~~~~ 81 (153)
.+++.||++||++|+|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+...+.. .....+
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 147 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 147 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEE
Confidence 35688999999999999999999999998887666543 25789999999999875322223333321 123468
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++|||++|.|++++|.+|.+
T Consensus 148 ~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 148 QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEeeCCCCCChHHHHHHHhc
Confidence 99999999999999999874
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.65 E-value=2.6e-15 Score=106.34 Aligned_cols=97 Identities=26% Similarity=0.497 Sum_probs=82.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcC-CceE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYY 82 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~-~~~~ 82 (153)
..+++.|+++++++++|||++++++|+.+..|...+.+.. .+.|+++++||.|+.. +.+..+ ...+++.++ ++++
T Consensus 63 ~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04177 63 TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFY 142 (168)
T ss_pred hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEE
Confidence 3578889999999999999999999999999998887643 4799999999999974 444433 456777777 8899
Q ss_pred EecCCCCCCcHHHHHHHHHHHh
Q 031782 83 EISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++||++|.|++++|.++++.+.
T Consensus 143 ~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 143 ETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=2.8e-15 Score=104.65 Aligned_cols=95 Identities=27% Similarity=0.494 Sum_probs=81.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.+++.|++++|++++|||+++++++..+..|+.++.... .++|+++|+||+|+.. +.+..+ ...+++..+.+++++|
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 143 (162)
T cd04123 64 ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS 143 (162)
T ss_pred HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 467789999999999999999999999999999888764 3689999999999974 344443 4567788889999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
++++.|++++|+++.+.+
T Consensus 144 ~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 144 AKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998875
No 93
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=1.2e-15 Score=108.51 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC-hHHHHHHHHcCC-ceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~-~~~~~~~~~~~~-~~~e~S 85 (153)
.++..||+++|++++|||.+++.+|..+..|+..+... .++|+++|+||+|+.+ +.+. .+...+++.++. .++++|
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEE
Confidence 46778999999999999999999999999998876433 3799999999999964 3332 235677788886 479999
Q ss_pred CCCCCCcHHHHHHHHHHHh
Q 031782 86 AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~ 104 (153)
|++|.|++++|..+++.+.
T Consensus 148 a~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred eccCccHHHHHHHHHHHhh
Confidence 9999999999999999875
No 94
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=4.2e-15 Score=109.30 Aligned_cols=100 Identities=28% Similarity=0.402 Sum_probs=82.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHH-HHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~-~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~ 82 (153)
..++..|++++|++|+|||++++++|..+.. |...+.... .+.|+++|+||+|+.. +.+..+ ...++...++.|+
T Consensus 76 ~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 76 RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 3467899999999999999999999999975 666665443 3679999999999974 444433 5577888889999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+|||+++.|++++|.+|...+....
T Consensus 156 e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 156 ECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999997653
No 95
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=3.2e-15 Score=104.68 Aligned_cols=95 Identities=27% Similarity=0.414 Sum_probs=80.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+...+++++|++++|||++++++|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++..++.++++
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIET 142 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEE
Confidence 3467889999999999999999999999999999887654 3699999999999954 444443 566777888999999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~ 102 (153)
||+++.|++++|.++++.
T Consensus 143 Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 143 SAKAGHNVKELFRKIASA 160 (161)
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 96
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=1.3e-15 Score=107.28 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=70.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChH-HHHHH----HHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~----~~~~~~~ 81 (153)
.+.+.||++||++|+|||.+++.+|..+..|+..+... ..+.|+++++||+|+.+.....+ ...+. ...+..+
T Consensus 59 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (159)
T cd04150 59 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYI 138 (159)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEE
Confidence 46788999999999999999999999998887766543 24689999999999965322222 22221 1123457
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++|||++|.||+++|++|++
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999999864
No 97
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=3.2e-15 Score=112.79 Aligned_cols=96 Identities=26% Similarity=0.436 Sum_probs=78.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh----------cCCCcEEEEeeCCCCCC-cccChH-HHHHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK 76 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~----------~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~ 76 (153)
.++..|+.++|++|+|||+++++||+.+..|+..+... ..++|+++|+||+|+.. +.+... ..+++..
T Consensus 63 ~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~ 142 (247)
T cd04143 63 AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG 142 (247)
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh
Confidence 46778899999999999999999999999998888653 14789999999999974 445443 4455443
Q ss_pred -cCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 77 -KNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 77 -~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.++.++++||++|.|++++|.+|++.+.
T Consensus 143 ~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 143 DENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999999998763
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.64 E-value=5.5e-15 Score=104.44 Aligned_cols=99 Identities=27% Similarity=0.528 Sum_probs=83.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC-----CCcEEEEeeCCCCCC-cccChH-HHHHHHHcC-C
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-L 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~-~ 79 (153)
..++..|++++|++|+|||++++.+|.....|...+..... ++|+++|+||+|+.. .....+ ...+++..+ .
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 142 (172)
T cd01862 63 QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNI 142 (172)
T ss_pred HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 45678899999999999999999999999999887765542 799999999999973 333333 456777777 7
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++++||++|.|++++|.++.+.+.+.
T Consensus 143 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 143 PYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999988765
No 99
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.64 E-value=6e-15 Score=103.46 Aligned_cols=95 Identities=29% Similarity=0.522 Sum_probs=82.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+..|++++|++++|||++++++|.....|+..+.... .++|+++++||+|+.. +.+..+ ...++...++.++++|
T Consensus 65 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 65 SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence 456789999999999999999999999999999887765 5789999999999874 444443 5577888889999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|++|.|+.++|.+|++.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 145 AKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999876
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.63 E-value=3.2e-15 Score=106.95 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=72.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHH-----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~-----~~~~~~~~ 81 (153)
.+++.||++||++|+|||++++++|.....|+..+... ..++|+++|+||+|+.+.....+.... +......+
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYI 151 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEE
Confidence 46788999999999999999999999998888776543 247899999999998653211111111 11122346
Q ss_pred EEecCCCCCCcHHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+++||++|.|++++|.+|...+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998775
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1.1e-14 Score=102.02 Aligned_cols=97 Identities=29% Similarity=0.490 Sum_probs=82.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..++++++++++|||++++.+|..+..|...+.... .++|+++|+||+|+.. ...... ...++..+++++++
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVE 141 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 4567889999999999999999999999999988887762 4799999999999975 333333 45677788899999
Q ss_pred ecCCCCCCcHHHHHHHHHHHh
Q 031782 84 ISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+||++|.|++++|.++...+.
T Consensus 142 ~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 142 TSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=8.6e-15 Score=103.36 Aligned_cols=95 Identities=29% Similarity=0.517 Sum_probs=80.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..+..|++++|++++|||+++.++|..+..|+..+.... .+.|+++|+||+|+.+ +.+... ...+.+.....+++||
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S 150 (169)
T cd04114 71 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS 150 (169)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence 355789999999999999999999999999998887664 3689999999999974 455544 4566776778899999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|++|.|+.++|.++++.+
T Consensus 151 a~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 151 AKESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999865
No 103
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.61 E-value=7.6e-15 Score=104.28 Aligned_cols=95 Identities=25% Similarity=0.463 Sum_probs=77.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccCh-HHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~-~~~~~ 73 (153)
.++..+++++|++++|||+++++||+.+. .|+..+.....+.|+++|+||+|+.+. .+.. ++..+
T Consensus 64 ~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~ 143 (175)
T cd01870 64 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 143 (175)
T ss_pred hccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHH
Confidence 35567889999999999999999999885 588888776568999999999998642 1222 34567
Q ss_pred HHHcC-CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 74 HRKKN-LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 74 ~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+...+ ..+++|||++|.|++++|.+|++.+
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 144 ANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 77776 4799999999999999999998765
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.61 E-value=1.5e-15 Score=107.54 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=76.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccCh-----HHHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-----KQVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~-----~~~~~~~~~~~~~ 81 (153)
..++..||++||++|+|||.+++.+|.....|+..+.....++|+++|+||+|+.. +.+.. ....++++.++.+
T Consensus 58 ~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 137 (164)
T cd04162 58 RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWIL 137 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEE
Confidence 35678899999999999999999999999999888865546899999999999875 32221 1235566677889
Q ss_pred EEecCCC------CCCcHHHHHHHHH
Q 031782 82 YEISAKS------NYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~------~~~v~~lf~~l~~ 101 (153)
++|||++ ++||.++|..+..
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHhc
Confidence 9999888 9999999998763
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.2e-14 Score=102.89 Aligned_cols=97 Identities=19% Similarity=0.293 Sum_probs=76.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcccC---hH-HHHHHHHcC--Cce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AK-QVTFHRKKN--LQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~---~~-~~~~~~~~~--~~~ 81 (153)
.....+++++|++++|||++++.+|..+. .|+..+.....+.|+++|+||+|+.+.... .+ ...++..++ ..+
T Consensus 62 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01893 62 ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETC 141 (166)
T ss_pred HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEE
Confidence 34566789999999999999999999985 688888766568999999999999763321 12 223334333 379
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|||++|.|++++|..+.+.+.+
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred EEeccccccCHHHHHHHHHHHhcC
Confidence 999999999999999999988754
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.61 E-value=6.3e-15 Score=107.40 Aligned_cols=97 Identities=26% Similarity=0.314 Sum_probs=79.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC--cccChH-HHHHH-HHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQVKAK-QVTFH-RKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~--~~v~~~-~~~~~-~~~~~~~ 81 (153)
..+++.|+.++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.. +.+... ..+.. ...+..+
T Consensus 61 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 140 (198)
T cd04147 61 PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGF 140 (198)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcE
Confidence 4467889999999999999999999999999998887764 4799999999999864 333332 22333 2456789
Q ss_pred EEecCCCCCCcHHHHHHHHHHHh
Q 031782 82 YEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+++||++|.|++++|+++++.+.
T Consensus 141 ~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 141 VETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=7.5e-15 Score=105.81 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=73.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHH-HH----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~-~~----~~~~~~~~ 81 (153)
.+++.||+++|++|+|||++++++|.....|+..+... ..+.|+++|+||.|+.+.....+.. .+ +....+.+
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYI 155 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEE
Confidence 46788999999999999999999999988777666432 2468999999999986422111211 11 11122346
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++||++|.|++++|++|.+.+.++
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999999888654
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=5.6e-15 Score=105.19 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=73.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHHH-----HcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~-----~~~~~~ 81 (153)
.++..|++++|++++|||.+++.+|.....|+..+... ..++|+++|+||+|+.+.....+...+.. ..++++
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRI 152 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEE
Confidence 46788999999999999999999999988888776543 25799999999999975332222333332 335689
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++|||++|.|++++|.+++.
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=3.8e-14 Score=98.69 Aligned_cols=96 Identities=29% Similarity=0.510 Sum_probs=81.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC--CCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+...+++++|++++|||+++++++..+..|...+..... ..|+++|+||+|+.. ..+..+ ...++...++++++
T Consensus 61 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (160)
T cd00876 61 SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIE 140 (160)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEE
Confidence 45677889999999999999999999999999888877653 799999999999976 444443 56777888889999
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
+|++++.|++++|++|.+.+
T Consensus 141 ~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 141 TSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred eccCCCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 110
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=104.96 Aligned_cols=99 Identities=21% Similarity=0.419 Sum_probs=86.7
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccCh-HHHHHH
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFH 74 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~-~~~~~~ 74 (153)
+++..|.++|+++++|+++++.||.++. .|+.++.++++++|+||||+|.||.+. .+.. ++..+|
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 5677899999999999999999999985 799999999999999999999999731 2333 367889
Q ss_pred HHcC-CceEEecCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 75 RKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 75 ~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
++.| ..|+||||++..|+.++|+..++.+.....
T Consensus 149 ~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 149 KEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999 789999999999999999999999977543
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.57 E-value=1.8e-14 Score=100.88 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=71.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCCcccChHHHH---HHH--HcC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVT---FHR--KKN 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~~~v~~~~~~---~~~--~~~ 78 (153)
..++..|++++|++|+|+|.+++.+|.....|+..+.... .++|+++|+||+|+.+.....+... +.. ...
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~ 138 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKP 138 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCce
Confidence 4577899999999999999999999998888887775531 3799999999999865322111111 111 112
Q ss_pred CceEEecCCCCCCcHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
..+++|||++|.|++++|.+|.+
T Consensus 139 ~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCCchHHHHHHHhc
Confidence 45899999999999999999864
No 112
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.57 E-value=3.1e-14 Score=102.56 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=76.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHH--H----cCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR--K----KNL 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~--~----~~~ 79 (153)
..++..|++++|++++|||.+++.++..+..|+.++.... .+.|+++|+||+|+.+.....+...+.. . .++
T Consensus 66 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCce
Confidence 3567889999999999999999999999988988777643 4799999999999864321122223221 1 124
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++++|||++|.|++++|.+|.+.+..
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999998854
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.55 E-value=1e-13 Score=95.87 Aligned_cols=93 Identities=35% Similarity=0.590 Sum_probs=80.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCC-CcccCh-HHHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKA-KQVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~-~~~v~~-~~~~~~~~~~~~~~e~ 84 (153)
..+...+++++|++++|||.++++++..+..|+..+.... .+.|+++++||+|+. ...... +...++...+++++++
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEE
Confidence 4567889999999999999999999999999999888875 579999999999996 333333 3567777888999999
Q ss_pred cCCCCCCcHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLA 100 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~ 100 (153)
||+++.|++++|.+|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999999986
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.55 E-value=1.2e-13 Score=98.66 Aligned_cols=99 Identities=27% Similarity=0.375 Sum_probs=83.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.+...++.++++++++||+++..+|+.+..|+..+.+.. .+.|+++|+||+|+.. +.+... ...+++.++.+++++
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
T cd04137 64 ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLES 143 (180)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEE
Confidence 456789999999999999999999999999888777653 4689999999999974 334433 456777888899999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||+++.|+.++|.++.+.+....
T Consensus 144 Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 144 SARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999987543
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.55 E-value=3.8e-14 Score=101.18 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=71.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHH----HHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~----~~~~~~~ 81 (153)
..+..|++++|++++|||.+++++|.....|+..+.... .++|+++++||+|+.+.....+ ...+. ...++++
T Consensus 74 ~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~ 153 (174)
T cd04153 74 SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHI 153 (174)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 456788999999999999999999988888777665432 4689999999999865321122 12221 2334678
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++|||++|.|++++|++|++
T Consensus 154 ~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 154 QGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EecccCCCCCHHHHHHHHhc
Confidence 99999999999999999975
No 116
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.55 E-value=1.8e-14 Score=108.63 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=75.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
..+++.|++++|++++|||++++. ||..+..|+..+.. .++|+++|+||+||.+ +.+..+.......++++++++|
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~S 104 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTS 104 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 457788999999999999999887 99999999976654 3899999999999964 3333232333445789999999
Q ss_pred CCCCCCcHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLAR 101 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~ 101 (153)
|++|.|++++|..+..
T Consensus 105 Aktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 105 SKNQDGLKELIEALQN 120 (245)
T ss_pred cCCchhHHHHHhhhcC
Confidence 9999999999988764
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.55 E-value=2.2e-14 Score=100.42 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=71.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHH------HHHHHcCCc
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQ 80 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~------~~~~~~~~~ 80 (153)
.++..|++++|++|+|||.+++.++..+..|+..+.... .+.|+++|+||+|+.......+.. .++...+++
T Consensus 59 ~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (160)
T cd04156 59 TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWY 138 (160)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEE
Confidence 456789999999999999999999999988887765432 479999999999986421111111 112223456
Q ss_pred eEEecCCCCCCcHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
+++|||++|+|++++|++|++
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEecccccCCChHHHHHHHhc
Confidence 899999999999999999864
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.54 E-value=5.4e-14 Score=101.37 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=72.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHH---------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK--------- 76 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~--------- 76 (153)
.++..|++++|++++|+|.++..+|.....|+..+.... .+.|+++++||+|+... +... ...+...
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccc
Confidence 456789999999999999999999988888887776532 46999999999998642 2222 3333321
Q ss_pred -------cCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 77 -------KNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 77 -------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
....+++|||++|+|++++|.+|++.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 22468999999999999999999864
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=7.6e-14 Score=98.47 Aligned_cols=93 Identities=22% Similarity=0.430 Sum_probs=76.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcc------------cCh-HHHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKA-KQVTFH 74 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~------------v~~-~~~~~~ 74 (153)
.....+++.+|++++|||++++.+|.... .|+..+.....+.|+++|+||+|+.... +.. +...++
T Consensus 63 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~ 142 (171)
T cd00157 63 RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLA 142 (171)
T ss_pred ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHH
Confidence 45667889999999999999999998775 5888877765679999999999987522 122 245677
Q ss_pred HHcCC-ceEEecCCCCCCcHHHHHHHHH
Q 031782 75 RKKNL-QYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 75 ~~~~~-~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
..++. +++++||++|.|++++|.++++
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 143 KEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 77776 8999999999999999999875
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.51 E-value=1.2e-13 Score=97.36 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=73.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHHH-------cC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~-------~~ 78 (153)
..+...+++++|++++|+|.++.+++.....|+..+.+.. .++|+++|+||+|+.......+...+... .+
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCc
Confidence 3456789999999999999999989998888887776542 47999999999998653222222332221 23
Q ss_pred CceEEecCCCCCCcHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
.+++++||++|.|+++++++|++
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 57999999999999999999974
No 121
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.51 E-value=1.7e-13 Score=97.58 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=71.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc---eEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~---~~e~ 84 (153)
..++..|++++|++|+|||.++..++..+..|.... . .++|+++|+||+|+.+.........+++.++++ ++++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILV 157 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEe
Confidence 346678999999999999999877777776665332 2 378999999999986422222234566666653 8999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||++|.|++++|++|.+.+
T Consensus 158 Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 158 SAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred eccCCCCHHHHHHHHHhhC
Confidence 9999999999999998875
No 122
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.51 E-value=1.2e-13 Score=98.08 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=73.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-H-----HHHHHHcC-
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-Q-----VTFHRKKN- 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~-----~~~~~~~~- 78 (153)
..+.+.||++||++|+|||.+++.+|..+..|+..+.... .++|+++|+||+|+.+.....+ . ..+++..+
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~ 136 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKS 136 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCc
Confidence 3567899999999999999999999999999998887643 4789999999999975321111 1 13333333
Q ss_pred -CceEEecCCCC------CCcHHHHHHHHH
Q 031782 79 -LQYYEISAKSN------YNFEKPFLYLAR 101 (153)
Q Consensus 79 -~~~~e~Sa~~~------~~v~~lf~~l~~ 101 (153)
+.+++|||++| .|+.+.|+||++
T Consensus 137 ~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 137 LCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 46788999998 899999999974
No 123
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.49 E-value=1.8e-13 Score=94.26 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=64.0
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCC-ceEEecCCCCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYN 91 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sa~~~~~ 91 (153)
+++++|++|+|||++++.++.. ..|.... ..|+++|+||+|+.++....+ ...+++..+. +++++||++|.|
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 5899999999999999998865 3454322 349999999999975443333 4567777775 799999999999
Q ss_pred cHHHHHHHH
Q 031782 92 FEKPFLYLA 100 (153)
Q Consensus 92 v~~lf~~l~ 100 (153)
++++|.+++
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999875
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.49 E-value=3.5e-13 Score=94.45 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=68.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHH-HHHH----HHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-VTFH----RKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~-~~~~----~~~~~~~ 81 (153)
.+++.|++++|++|+|+|.+++.++.....|+..+.+. ..+.|+++|+||+|+.+.....+. ..+. ...+.++
T Consensus 58 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 137 (158)
T cd04151 58 PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSI 137 (158)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEE
Confidence 46788999999999999999998888776666544332 247999999999998643211111 1111 1123469
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++|||++|.|++++|++|++
T Consensus 138 ~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEeeccCCCCHHHHHHHHhc
Confidence 99999999999999999975
No 125
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.48 E-value=3.8e-13 Score=94.90 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=73.2
Q ss_pred hhHhhhh---cCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccC-hHHHHHHHH-cCCc
Q 031782 10 IILICSI---HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQVTFHRK-KNLQ 80 (153)
Q Consensus 10 ~~~~~~~---~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~-~~~~~~~~~-~~~~ 80 (153)
+...|++ .+|++++|+|.+++ .+++.+..|.+.+.... .++|+++|+||+|+...... .....+... .+.+
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP 147 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC
Confidence 4455555 59999999999998 79999999998887653 36899999999999753322 223445555 3678
Q ss_pred eEEecCCCCCCcHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
++++||+++.|++++|.++.+.
T Consensus 148 ~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 148 VFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999999864
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.47 E-value=6.4e-13 Score=92.85 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=73.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHH-----HHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~-----~~~~~~ 80 (153)
......+++++|++++|||+++++++.....|+..+.... .+.|+++|+||+|+.......+..... ....++
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWH 136 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEE
Confidence 3467889999999999999999999999988887766542 479999999999987533222222221 223467
Q ss_pred eEEecCCCCCCcHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++++||++|.|++++|++|..
T Consensus 137 ~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCCCHHHHHHHHhh
Confidence 999999999999999999875
No 127
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.46 E-value=9.3e-13 Score=94.39 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=75.3
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHH------HHcC
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKN 78 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~------~~~~ 78 (153)
...+.+.||.++|++|||+|.++.+.+......+..+.... .++|+++++||+|+.+.....+..... ....
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~ 150 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRP 150 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSC
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCc
Confidence 45688999999999999999999988888887777766542 579999999999987532222222211 1233
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+.++.|||.+|+|+.+.++||.+.|
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 5689999999999999999999875
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.46 E-value=5.4e-13 Score=94.01 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=66.9
Q ss_pred cCcEEEEEEeCCChhhH--hhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHH
Q 031782 17 HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
.+|++++|+|.++..++ .....|+..+.....+.|+++|+||+|+.+.....+...++...+.++++|||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 36899999999987654 5556687777665457999999999999653211123345555567899999999999999
Q ss_pred HHHHHHHHH
Q 031782 95 PFLYLARKL 103 (153)
Q Consensus 95 lf~~l~~~i 103 (153)
+|+++.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999999876
No 129
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.46 E-value=5.5e-13 Score=97.81 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=67.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--------------------CCCcEEEEeeCCCCCC-ccc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--------------------ENIPIVLCGNKVDVKN-RQV 66 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--------------------~~~p~vlv~nK~Dl~~-~~v 66 (153)
..++..||+++|++|+|||++++.||+.+..|+.++.... .++|+++||||+|+.+ +.+
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 3578899999999999999999999999999999987631 3689999999999975 333
Q ss_pred ChH-----HHHHHHHcCCceEEecCCCCC
Q 031782 67 KAK-----QVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 67 ~~~-----~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
... ...+|+..|++.++.++.++.
T Consensus 148 ~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 148 SGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred chHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 322 336788899999888877553
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=9.7e-13 Score=103.23 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=74.6
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCc-ccChH-HHHHHHHcCCceEEecCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~Sa~~ 88 (153)
+++.++++|+|+|+++.++++.+..|..++..+. .+.|+++|+||+|+.+. .+... ...++...+.++++|||++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt 312 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT 312 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4457999999999998888999999999988764 36899999999999753 22222 3344555678899999999
Q ss_pred CCCcHHHHHHHHHHHhC
Q 031782 89 NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~ 105 (153)
++|+++++.+|.+.+..
T Consensus 313 g~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 313 GEGLDELLRALWELLEE 329 (335)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988865
No 131
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.42 E-value=1.4e-12 Score=94.09 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=71.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHH-HH--HH--------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF--HR-------- 75 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~-~~--~~-------- 75 (153)
.+...||+++|++|+|+|.++++++.....|+.++.... .+.|+++|+||+|+.......+.. .+ ..
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKV 155 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccccc
Confidence 467889999999999999999999998888887765432 478999999999986422112221 11 11
Q ss_pred -HcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 76 -KKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 76 -~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
.....++.|||++|.|++++++||...
T Consensus 156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCceeEEEEeecccCCChHHHHHHHHhh
Confidence 012458999999999999999999865
No 132
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.40 E-value=3.6e-12 Score=88.31 Aligned_cols=104 Identities=16% Similarity=0.318 Sum_probs=86.6
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceE
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~ 82 (153)
-..+.++|+.-+|++++|||..+++||+-+..+...+...- ..+|+++.+||+|+.+ +++... +..||+.-.+..+
T Consensus 74 ~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~ 153 (198)
T KOG3883|consen 74 QQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLW 153 (198)
T ss_pred hhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEE
Confidence 46788999999999999999999999998766555555442 4799999999999975 555554 6789999999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhCCCCCC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~~~~~~ 110 (153)
+++|.+...+-+.|..++..+..-.+.+
T Consensus 154 eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 154 EVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEeccchhhhhHHHHHHHhccCCcccc
Confidence 9999999999999999999886654433
No 133
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.35 E-value=6.7e-12 Score=98.35 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=74.7
Q ss_pred hhhHhhhh---cCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChH-HHHHHHHcC
Q 031782 9 LIILICSI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN 78 (153)
Q Consensus 9 ~~~~~~~~---~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~ 78 (153)
.+...|++ .++++++|+|+++. ++++.+..|..++..+. .+.|+++|+||+|+.+.....+ ...+++..+
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG 303 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC
Confidence 34555555 69999999999986 68888888888887663 4789999999999975322222 345666677
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
.+++++||++++|+++++.+|.+.+
T Consensus 304 ~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 8899999999999999999998765
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.35 E-value=7.2e-12 Score=88.75 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=68.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------- 79 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~------- 79 (153)
.....|++++|++++|+|.++..++.....|+..+.... .++|+++++||+|+.+... ...+....++
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~~~~~~~~~ 149 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALNLHDLRDRT 149 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHcCCcccCCCe
Confidence 456778899999999999999889988887776655432 4799999999999864221 1223333332
Q ss_pred -ceEEecCCCCCCcHHHHHHHHH
Q 031782 80 -QYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 80 -~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
+++++||++|+|++++|+||++
T Consensus 150 ~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.34 E-value=1.3e-11 Score=85.36 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHH-HHH----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~-~~~----~~~~~~~ 80 (153)
..++..|++++|++++|+|.++..++.....|+..+.... .++|+++|+||+|+.+.....+. ..+ ....+++
T Consensus 58 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 58 RSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVS 137 (159)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceE
Confidence 3467789999999999999999999988877777665431 47899999999998653221111 111 1122367
Q ss_pred eEEecCCCCCCcHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
++++|+++|.|+++++++|.+
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCCChHHHHHHHhh
Confidence 899999999999999999875
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.33 E-value=1.1e-11 Score=90.43 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
++.++|++++|+|.+++.++.....|...+.... .++|+++|+||+|+.+.... ..++...+.+++++||+++.|+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---~~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL---EERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH---HHHhhcCCCceEEEEcCCCCCH
Confidence 4779999999999999888888777777665543 36899999999998643211 1334445678999999999999
Q ss_pred HHHHHHHHHHH
Q 031782 93 EKPFLYLARKL 103 (153)
Q Consensus 93 ~~lf~~l~~~i 103 (153)
++++.+|...+
T Consensus 194 ~~l~~~L~~~~ 204 (204)
T cd01878 194 DELLEAIEELL 204 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999998653
No 137
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.29 E-value=4.1e-11 Score=83.32 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=69.2
Q ss_pred hhhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+++.|+. ++|++++|+|.++.++. ..|...+... ++|+++|+||+|+.+. .+......++..++.+++++|
T Consensus 64 ~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iS 138 (158)
T cd01879 64 KVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTS 138 (158)
T ss_pred HHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEE
Confidence 35677776 99999999999976543 2344444443 7899999999999753 333334567777789999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|.++.|+.+++.++.+.+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 138
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.28 E-value=3.7e-11 Score=91.68 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=70.8
Q ss_pred hhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-ChHHHHHHHHcCC-ceEE
Q 031782 6 FNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNL-QYYE 83 (153)
Q Consensus 6 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~~~~~~~~~~-~~~e 83 (153)
.++.....+++++|++++|+|.++..++. ..++..+... +.|+++|+||+|+.+... ......++...+. +++.
T Consensus 68 ~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 68 LMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVP 143 (270)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEE
Confidence 34555678899999999999999876654 3444445443 789999999999864221 1223344444443 7899
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||++|.|+++++.++...+...
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCCC
Confidence 99999999999999999887553
No 139
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.27 E-value=4.9e-11 Score=83.42 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=78.6
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC----cccChH--HHHHHHHcC
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAK--QVTFHRKKN 78 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~----~~v~~~--~~~~~~~~~ 78 (153)
.....++||..+|++|+|+|.+++..|++....+..+.... .+.|+++++||.|+.. ..+... ...+++.+.
T Consensus 73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~ 152 (185)
T KOG0073|consen 73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH 152 (185)
T ss_pred hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC
Confidence 34568999999999999999999988888876655544321 4789999999999974 222222 235567778
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++.+-|||.+|+++.+.+.||+..+..
T Consensus 153 ~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 153 WRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHHH
Confidence 899999999999999999999998875
No 140
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.27 E-value=2.3e-11 Score=85.84 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=66.6
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC--ceEEecCCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNY 90 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~--~~~e~Sa~~~~ 90 (153)
.+++++|++++|+|.++..++.. .|+..+. .+.|+++++||+|+.+.. .....+++...+. +++++||++|+
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~---~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLP--AGLLDIG---VSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccC--HHHHhcc---CCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 34789999999999998877633 4554432 367999999999986422 2224566667774 89999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 031782 91 NFEKPFLYLARKLAG 105 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~ 105 (153)
|++++|..+.+.+.+
T Consensus 134 gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 134 SVQQLVDYLASLTKQ 148 (158)
T ss_pred CHHHHHHHHHHhchh
Confidence 999999999888744
No 141
>PLN00023 GTP-binding protein; Provisional
Probab=99.26 E-value=3.6e-11 Score=93.52 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=59.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-------------CCCcEEEEeeCCCCCCc----cc---C
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNR----QV---K 67 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------~~~p~vlv~nK~Dl~~~----~v---~ 67 (153)
..++..||++++++|+|||++++.||..+..|+..+.... .++|+++||||+||..+ .+ .
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 4578899999999999999999999999999999998762 14899999999999642 22 2
Q ss_pred h-HHHHHHHHcCC
Q 031782 68 A-KQVTFHRKKNL 79 (153)
Q Consensus 68 ~-~~~~~~~~~~~ 79 (153)
. ++.+||+.+|+
T Consensus 177 ~e~a~~~A~~~g~ 189 (334)
T PLN00023 177 VDAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHHcCC
Confidence 3 36789988874
No 142
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=1.2e-10 Score=95.33 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=67.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC----hHHH-HHHHHcCCceEEec
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQV-TFHRKKNLQYYEIS 85 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~----~~~~-~~~~~~~~~~~e~S 85 (153)
+..++++||++|+|+|.++..++.++. ++..+.. .+.|+++|+||+|+.+.... .+.. .+......++++||
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 456789999999999999988877764 4444443 37999999999999642111 1111 12222346899999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.||+++|..+.+.+..
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 143
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.23 E-value=4.5e-11 Score=84.51 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=68.7
Q ss_pred HhhhhcCcEEEEEEeCCCh------hhHhhHHHHHHHHHhhc--------CCCcEEEEeeCCCCCCccc-ChH-HHHHHH
Q 031782 12 LICSIHGQCAIIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQV-KAK-QVTFHR 75 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~------~s~~~~~~~~~~i~~~~--------~~~p~vlv~nK~Dl~~~~v-~~~-~~~~~~ 75 (153)
..+++++|++++|+|.++. .++.....|...+.... .+.|+++|+||+|+..... ... ......
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL 148 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc
Confidence 4567899999999999987 57888887877776442 2689999999999964221 111 123334
Q ss_pred HcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 76 KKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 76 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
..+..++++||+++.|++++++++...
T Consensus 149 ~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 149 EEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 445789999999999999999998754
No 144
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.22 E-value=1.5e-10 Score=93.37 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=75.5
Q ss_pred hhhHhhhh---cCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChHHHHHHHHcCC
Q 031782 9 LIILICSI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 79 (153)
Q Consensus 9 ~~~~~~~~---~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~ 79 (153)
.+...|++ .++++|+|+|+++. ++++++..|..++..+. .+.|+++|+||+|+... ......+++..+.
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~ 302 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGP 302 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCC
Confidence 34555554 59999999999864 67888888888887764 37899999999998432 1223456666677
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+++.+||++++|+++++.+|.+.+....
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999998886543
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.21 E-value=1.5e-10 Score=91.45 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=65.6
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
..++++||++++|+|.+++.++..+..|...+.... .+.|+++|+||+|+.... ....+ .....+++++||++|.
T Consensus 263 le~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 263 LEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP---RIERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH---hHHHH-HhCCCCEEEEEccCCC
Confidence 346889999999999999888888777766555542 378999999999986421 11111 1223468999999999
Q ss_pred CcHHHHHHHHHH
Q 031782 91 NFEKPFLYLARK 102 (153)
Q Consensus 91 ~v~~lf~~l~~~ 102 (153)
|+++++.+|...
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.20 E-value=1.2e-10 Score=91.64 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=69.1
Q ss_pred hhhhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC--CceE
Q 031782 6 FNVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYY 82 (153)
Q Consensus 6 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~--~~~~ 82 (153)
.++.....++.+||++++|+|.++ +|.... .|+..+... +.|.++|+||+|+.+.. ..+..+++...+ ..++
T Consensus 120 ~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~ 194 (339)
T PRK15494 120 AMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLF 194 (339)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEE
Confidence 344444566889999999999765 566664 355555544 56888999999986432 222334444443 5789
Q ss_pred EecCCCCCCcHHHHHHHHHHHhCC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++||++|.|++++|.+|...+...
T Consensus 195 ~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 195 PISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred EEeccCccCHHHHHHHHHHhCCCC
Confidence 999999999999999999988654
No 147
>PRK12289 GTPase RsgA; Reviewed
Probab=99.20 E-value=6.6e-11 Score=93.41 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=69.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
.+.+.++.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+||...............+|+.++.+||+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence 45566789999999999999865 45566788766643 3799999999999964211111223345678899999999
Q ss_pred CCCCcHHHHHHHHHH
Q 031782 88 SNYNFEKPFLYLARK 102 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~ 102 (153)
++.|+++++..|...
T Consensus 159 tg~GI~eL~~~L~~k 173 (352)
T PRK12289 159 TGIGLEALLEQLRNK 173 (352)
T ss_pred CCCCHHHHhhhhccc
Confidence 999999999988654
No 148
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.19 E-value=1.8e-10 Score=83.41 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=65.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHH-----HHcCC--
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL-- 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~-----~~~~~-- 79 (153)
..+...|++++|++++|+|+++... .|...+.....+.|+++|+||+|+........ ...+. +..+.
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 4567889999999999999987542 12223322223689999999999975333222 22333 23333
Q ss_pred -ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 -QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 -~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.++.+||++|.|+++++..|...+.
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999998875
No 149
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.18 E-value=1.9e-10 Score=80.68 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=66.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.+.+++++++|++++|+|.+++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++.+||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 4578899999999999999876443321 22222222 26899999999998542111111133344567899999999
Q ss_pred CCCcHHHHHHHHHHHhC
Q 031782 89 NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~ 105 (153)
+.|+++++..+...+..
T Consensus 81 ~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999988764
No 150
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.17 E-value=1.8e-10 Score=79.83 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=61.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEecCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKS 88 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sa~~ 88 (153)
....+++++|++++|+|.++..+.... .+...+... +.|+++|+||+|+.+.... .......+. +++++|+++
T Consensus 69 ~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 69 QAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEeccc
Confidence 345678999999999999875443332 122223332 6899999999998753211 223334555 789999999
Q ss_pred CCCcHHHHHHHHHH
Q 031782 89 NYNFEKPFLYLARK 102 (153)
Q Consensus 89 ~~~v~~lf~~l~~~ 102 (153)
|.|++++|.++++.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.17 E-value=1.7e-10 Score=93.62 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=71.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.....|++++|++++|||.+++.++... |+..+... +.|+++|+||+|+... ....+++.++.+++++||++
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~--~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKS--KKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhC--CCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec
Confidence 3456899999999999999998877765 77666543 7899999999998643 22345667778899999998
Q ss_pred CCCcHHHHHHHHHHHhCC
Q 031782 89 NYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~~ 106 (153)
.||+++|+.|.+.+...
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999988654
No 152
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.16 E-value=5.8e-10 Score=75.50 Aligned_cols=91 Identities=32% Similarity=0.510 Sum_probs=69.5
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHH--HHhhcCCCcEEEEeeCCCCCCcccChH---HHHHHHHcCCceEEe
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEI 84 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~--i~~~~~~~p~vlv~nK~Dl~~~~v~~~---~~~~~~~~~~~~~e~ 84 (153)
....+++.+|++++|+|.++..++.....|... ........|+++|+||+|+........ ........+.+++++
T Consensus 61 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 61 LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFET 140 (157)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEE
Confidence 346688999999999999999999888887322 222235899999999999875332222 223455556899999
Q ss_pred cCCCCCCcHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLA 100 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~ 100 (153)
|+..+.|+++++.+|.
T Consensus 141 s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 141 SAKTGENVEELFEELA 156 (157)
T ss_pred ecCCCCChHHHHHHHh
Confidence 9999999999999885
No 153
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.16 E-value=3.9e-10 Score=78.73 Aligned_cols=88 Identities=11% Similarity=0.054 Sum_probs=59.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-c---ChHHHHHHHH---cC
Q 031782 9 LIILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KN 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v---~~~~~~~~~~---~~ 78 (153)
.....+++++|++++|+|.++ ..++..+ ..+... ...|+++|+||+|+.+.. . ..+..+..+. .+
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLAD 140 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCC
Confidence 345567889999999999987 3333322 222222 124899999999997531 1 1122233333 35
Q ss_pred CceEEecCCCCCCcHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
.+++++||++|.|++++|..+.+
T Consensus 141 ~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 141 APIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhh
Confidence 78999999999999999998864
No 154
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.15 E-value=8.1e-11 Score=84.05 Aligned_cols=98 Identities=28% Similarity=0.393 Sum_probs=82.8
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCCcccCh---HHHHHHHHcCC-c
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-Q 80 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~~~v~~---~~~~~~~~~~~-~ 80 (153)
|++-||+.+++.++|||+|+.-+|+....|.+.+.... ..+|+|+.+||||........ ....+.+++|. .
T Consensus 91 mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~g 170 (229)
T KOG4423|consen 91 MTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEG 170 (229)
T ss_pred eEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccc
Confidence 67889999999999999999999999999998876542 478999999999987643332 24577888884 6
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++++|+|.+.|+.++-..|+..+..+.
T Consensus 171 wtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 171 WTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eeeeccccccChhHHHHHHHHHHHhhc
Confidence 899999999999999999999997654
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.14 E-value=3.1e-10 Score=92.93 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=65.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEecCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAK 87 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sa~ 87 (153)
..+..|+++||++|+|||.++..++.. ..|...+... ++|+++|+||+|+.... .+...+. ..++ ..++|||+
T Consensus 109 ~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~~--~~piilV~NK~Dl~~~~--~~~~~~~-~~g~~~~~~iSA~ 182 (472)
T PRK03003 109 EQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRRS--GKPVILAANKVDDERGE--ADAAALW-SLGLGEPHPVSAL 182 (472)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECccCCccc--hhhHHHH-hcCCCCeEEEEcC
Confidence 346678999999999999998755542 3344444433 79999999999986421 1112221 2332 35799999
Q ss_pred CCCCcHHHHHHHHHHHhC
Q 031782 88 SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~ 105 (153)
+|.|++++|.+++..+..
T Consensus 183 ~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 183 HGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCcHHHHHHHHhhccc
Confidence 999999999999998865
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.14 E-value=3.1e-10 Score=95.15 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=71.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC---ceEEecC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISA 86 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sa 86 (153)
.+..|++.||++|+|+|.++..+++....|...+. .++|+++|+||+|+.+........++.+.+++ .++++||
T Consensus 86 ~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSA 162 (595)
T TIGR01393 86 EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASA 162 (595)
T ss_pred HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeec
Confidence 45678999999999999998777777666654432 26899999999998643221223455666665 3899999
Q ss_pred CCCCCcHHHHHHHHHHHhC
Q 031782 87 KSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~ 105 (153)
++|.|++++|++|++.++.
T Consensus 163 ktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 163 KTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cCCCCHHHHHHHHHHhCCC
Confidence 9999999999999988754
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.14 E-value=1.4e-09 Score=87.90 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=66.0
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHH----cCCceEE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK----KNLQYYE 83 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~----~~~~~~e 83 (153)
-+..+++.||++|+|+|.++..+..... ++..+... +.|+++|+||+|+.+ .....+ ...+... .++++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 3456899999999999999876665543 33333333 789999999999972 111111 1122222 2478999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|++++|.++.+....
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 158
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6.1e-10 Score=79.29 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=75.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHH-HH----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~-~~----~~~~~~~~ 81 (153)
.+.++||++++++|||+|.+|++.+...+.-+..+.... .+.|+++.+||.|+.......+.. .+ .+...-.+
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEE
Confidence 469999999999999999999999998887776666554 489999999999998643322221 11 11122346
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
..|||.+|+|+.+.++|+...+..
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eeccccccccHHHHHHHHHHHHhc
Confidence 789999999999999999988854
No 159
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.12 E-value=2.1e-10 Score=88.37 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=68.5
Q ss_pred hhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc
Q 031782 14 CSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
.+.++|++++|+|++++. ++..+..|+..+... ++|+++|+||+||.+.........+....+++++.+||+++.|+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 478999999999999987 888888998777654 79999999999996531111123344557889999999999999
Q ss_pred HHHHHHHHH
Q 031782 93 EKPFLYLAR 101 (153)
Q Consensus 93 ~~lf~~l~~ 101 (153)
++++..|..
T Consensus 153 ~~L~~~L~~ 161 (287)
T cd01854 153 DELREYLKG 161 (287)
T ss_pred HHHHhhhcc
Confidence 999988764
No 160
>PRK04213 GTP-binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=83.56 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=42.9
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCC---------ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---------QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~---------~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|+++|+||+|+.+.. ......+++.+++ ++++|||++| |++++|.+|.+.+..
T Consensus 130 ~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 79999999999986432 1224455666654 4799999999 999999999988754
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.11 E-value=3.5e-10 Score=78.68 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=81.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-------cccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------~~v~~~~~~~~~~~~~~~~ 82 (153)
+.+-..+++-+++|+||++.+.++..+..|+...+..+...--++||+|.|+-- .++..+...+|+-.+.+.+
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLF 164 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEE
Confidence 345566789999999999999999999999999888765555677999999642 2233445678899999999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.||+....||..+|..+...++..+
T Consensus 165 F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 165 FCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred EeeccccccHHHHHHHHHHHHhCCc
Confidence 9999999999999999999998754
No 162
>PRK11058 GTPase HflX; Provisional
Probab=99.11 E-value=7.8e-10 Score=89.45 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=67.2
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc-eEEecCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKS 88 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sa~~ 88 (153)
+..++++||++|+|+|.+++.++..+..|...+.... .++|+++|+||+|+...... ... ....+.+ ++++||++
T Consensus 270 tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~-~~~~~~~~~v~ISAkt 346 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RID-RDEENKPIRVWLSAQT 346 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHH-HHhcCCCceEEEeCCC
Confidence 3456789999999999999888887765544444332 37899999999998642111 111 1123455 48999999
Q ss_pred CCCcHHHHHHHHHHHhC
Q 031782 89 NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~ 105 (153)
|.|+++++++|...+..
T Consensus 347 G~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 347 GAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999998854
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=4.9e-10 Score=91.76 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=68.4
Q ss_pred hhhcCcEEEEEEeCCC----hhhHhhHHHHHHHHHhhc------------CCCcEEEEeeCCCCCCc-ccChHHHHHHHH
Q 031782 14 CSIHGQCAIIMFDVTA----RLTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNR-QVKAKQVTFHRK 76 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~----~~s~~~~~~~~~~i~~~~------------~~~p~vlv~nK~Dl~~~-~v~~~~~~~~~~ 76 (153)
+++.||++|+|+|+++ ++++.++..|..++..+. .+.|+++|+||+|+.+. ............
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~ 312 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA 312 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH
Confidence 4678999999999985 345666666666665442 26899999999999642 222222223344
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+++++.+||+++.|+++++.+|.+.+...
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 578899999999999999999999888653
No 164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.10 E-value=5.2e-10 Score=77.33 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=65.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.....++.++|++++|+|++++.+......|.. ..+.|+++|+||+|+.+.... .....+.+++++||++
T Consensus 72 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 72 ERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCC
Confidence 345567889999999999998777766554433 237899999999998753221 3344467899999999
Q ss_pred CCCcHHHHHHHHHHH
Q 031782 89 NYNFEKPFLYLARKL 103 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i 103 (153)
+.|+++++.+|...+
T Consensus 142 ~~~v~~l~~~l~~~~ 156 (157)
T cd04164 142 GEGLDELKEALLELA 156 (157)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999988754
No 165
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=3e-10 Score=80.22 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=79.0
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHH---HHHHHc---C
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV---TFHRKK---N 78 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~---~~~~~~---~ 78 (153)
...+...||..|+++|+++|.++++.|+....-++.+...- .++|+++.+||.|+.+.....+.. ..+... .
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRD 161 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCcc
Confidence 45688999999999999999999999998877665554432 589999999999997643322211 223333 3
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+|..|||.+|+||++..+|+++.+.++
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 6799999999999999999999999776
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.08 E-value=4.3e-10 Score=91.55 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=67.0
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 89 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~ 89 (153)
.+..+++++|++++|||.+++.++.....|.. ..+.|+++|+||+|+.+.... . ...+.+++++||++|
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~----~--~~~~~~~i~iSAktg 355 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDL----E--EENGKPVIRISAKTG 355 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchh----h--hccCCceEEEEeeCC
Confidence 35678999999999999999888776555543 337899999999999642111 1 334567999999999
Q ss_pred CCcHHHHHHHHHHHhC
Q 031782 90 YNFEKPFLYLARKLAG 105 (153)
Q Consensus 90 ~~v~~lf~~l~~~i~~ 105 (153)
.|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998854
No 167
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.07 E-value=1.2e-09 Score=79.23 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=56.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC---hHHHHHHH-------Hc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KK 77 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~---~~~~~~~~-------~~ 77 (153)
......|++++|++++|||+++. .+.....|+..+... ++|+++|+||+|+.+.... .+...+.. ..
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccC
Confidence 34678899999999999999874 233334444444333 7899999999999643221 12223332 23
Q ss_pred CCceEEecCCCCCCcH
Q 031782 78 NLQYYEISAKSNYNFE 93 (153)
Q Consensus 78 ~~~~~e~Sa~~~~~v~ 93 (153)
+++++++||++|.|+.
T Consensus 156 ~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 156 DFPVLYASAKNGWASL 171 (194)
T ss_pred ccCEEEeehhcccccc
Confidence 6789999999998774
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.07 E-value=1.5e-09 Score=76.07 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=62.8
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc--ccChH-HHHHHHHc----CCceEEe
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVKAK-QVTFHRKK----NLQYYEI 84 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~--~v~~~-~~~~~~~~----~~~~~e~ 84 (153)
..++.++|++++|+|.+++.+..... +...+... +.|+++++||+|+.+. ..... ...+.+.. +.+++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLR-IAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 45678999999999999876655432 33333332 6899999999998753 21122 22333333 3679999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~ 102 (153)
||+++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 169
>PRK00098 GTPase RsgA; Reviewed
Probab=99.06 E-value=3.7e-10 Score=87.47 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=64.8
Q ss_pred hhcCcEEEEEEeCCChhhHhh-HHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccChHHHHHHHHcCCceEEecCCCCCCc
Q 031782 15 SIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
..++|++++|+|+++++++.. +..|+..+... ++|+++|+||+|+.+. ..........+..+++++.+||+++.|+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 489999999999998765444 47787766543 7999999999999632 1111233455667889999999999999
Q ss_pred HHHHHHHHH
Q 031782 93 EKPFLYLAR 101 (153)
Q Consensus 93 ~~lf~~l~~ 101 (153)
++++..+..
T Consensus 156 ~~L~~~l~g 164 (298)
T PRK00098 156 DELKPLLAG 164 (298)
T ss_pred HHHHhhccC
Confidence 999987753
No 170
>PRK12288 GTPase RsgA; Reviewed
Probab=99.04 E-value=9e-10 Score=86.91 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=66.8
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc---ChHHHHHHHHcCCceEEecCCCCCCc
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v---~~~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
.|+|.+++|++++...++..+..|+..+.. .++|.++|+||+||..... ...........+++++.+||+++.|+
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 459999999999877899999999875543 3799999999999964321 11122344567889999999999999
Q ss_pred HHHHHHHHHH
Q 031782 93 EKPFLYLARK 102 (153)
Q Consensus 93 ~~lf~~l~~~ 102 (153)
++++..|...
T Consensus 197 deL~~~L~~k 206 (347)
T PRK12288 197 EELEAALTGR 206 (347)
T ss_pred HHHHHHHhhC
Confidence 9999998754
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=2e-09 Score=86.16 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=72.1
Q ss_pred hhhcCcEEEEEEeCC---ChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcc-cChHHHHHHHHcC--CceEEe
Q 031782 14 CSIHGQCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKN--LQYYEI 84 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~---~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~~~~--~~~~e~ 84 (153)
+++.+|++++|+|++ +.+++..+..|+.++..+. .+.|+++|+||+|+.... +......+.+..+ ..++.+
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEE
Confidence 578999999999998 4567788888888887764 368999999999986532 2222334445444 468999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||+++.|+++++..|.+.+...
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhhC
Confidence 9999999999999999988653
No 172
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.03 E-value=3.2e-09 Score=74.50 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=61.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC---hHHHHHHH----H--
Q 031782 9 LIILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR----K-- 76 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~---~~~~~~~~----~-- 76 (153)
.++..++..+|++++|+|+++. .++..+ ..+.. .++|+++|+||+|+...... .....+.. .
T Consensus 65 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~----~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 138 (168)
T cd01887 65 NMRARGASLTDIAILVVAADDGVMPQTIEAI----KLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWG 138 (168)
T ss_pred HHHHHHHhhcCEEEEEEECCCCccHHHHHHH----HHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhcccccccc
Confidence 4566788999999999999874 233322 22332 27899999999998643211 11111111 1
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
.+++++++||++|.|+++++.+|.+..
T Consensus 139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 136799999999999999999998765
No 173
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.02 E-value=2.8e-09 Score=72.97 Aligned_cols=92 Identities=21% Similarity=0.382 Sum_probs=70.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCCh-hhHhhHH-HHHHHHHhhcC-CCcEEEEeeCCCCCCcccChHHH-HHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~-~~p~vlv~nK~Dl~~~~v~~~~~-~~~~~~~~~~~e~ 84 (153)
.+...+++++++++.++|+... .++.... .|...+..... +.|+++++||+|+.......... .+......+++++
T Consensus 65 ~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
T TIGR00231 65 AIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPL 144 (161)
T ss_pred HHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEe
Confidence 3456778899999999999887 6776665 67776666554 78999999999997644333332 3444445789999
Q ss_pred cCCCCCCcHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLA 100 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~ 100 (153)
||++|.|+.++|.+|.
T Consensus 145 sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 145 SAETGKNIDSAFKIVE 160 (161)
T ss_pred ecCCCCCHHHHHHHhh
Confidence 9999999999999874
No 174
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.02 E-value=4.6e-09 Score=77.12 Aligned_cols=98 Identities=26% Similarity=0.307 Sum_probs=75.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCC-hhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcc-------------cChH-HHH
Q 031782 9 LIILICSIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-------------VKAK-QVT 72 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~-~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~-------------v~~~-~~~ 72 (153)
.++..|+.++++++++||.++ ..+++....|...+...+ ...|+++|+||+|+.... .... ...
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAP 148 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHh
Confidence 578899999999999999999 456667778999998886 469999999999998532 1111 111
Q ss_pred HHHH---cCCceEEecCC--CCCCcHHHHHHHHHHHhCC
Q 031782 73 FHRK---KNLQYYEISAK--SNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 73 ~~~~---~~~~~~e~Sa~--~~~~v~~lf~~l~~~i~~~ 106 (153)
.... ....++++|++ ++.+|.++|..+.+.+...
T Consensus 149 ~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 149 KAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred HHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 1111 23348999999 9999999999999999754
No 175
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.6e-09 Score=72.84 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=72.9
Q ss_pred cchhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHH-HHHHHHhhc-CCCcEEEEeeCCCCCCcccChHH-H----HHHHH
Q 031782 4 SCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ-V----TFHRK 76 (153)
Q Consensus 4 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~-~----~~~~~ 76 (153)
+..+....+.||.+.|++|+|+|.+|++....... ++..+.+.. .+..+++++||.|...+....+. . .-.+.
T Consensus 72 qtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~ 151 (182)
T KOG0072|consen 72 QTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD 151 (182)
T ss_pred cccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh
Confidence 44566788999999999999999999876555443 333333321 46789999999998754332221 1 11223
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
....++++||.+|+|++++..||.+.+-.
T Consensus 152 r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 152 RIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred heeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 33678999999999999999999988744
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.01 E-value=3.4e-09 Score=81.58 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred chhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCCC-ccc-ChHHHHHHHHcC-Cc
Q 031782 5 CFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKN-LQ 80 (153)
Q Consensus 5 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~~-~~v-~~~~~~~~~~~~-~~ 80 (153)
..+......++.++|++++|+|.++. +.....++ ..+.. .+.|+++|+||+|+.. ... ......+.+..+ ..
T Consensus 72 ~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 72 RAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAE 147 (292)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCe
Confidence 34455667788999999999999983 22223333 33332 2689999999999973 222 222334555444 67
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++.+||+++.|+++++++|...+..
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999998864
No 177
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.01 E-value=2.1e-09 Score=90.23 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=67.8
Q ss_pred hhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEecC
Q 031782 10 IILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISA 86 (153)
Q Consensus 10 ~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sa 86 (153)
+.+.|+. ++|++++|+|.++.+. ...+..++.+. ++|+++|+||+|+.+ +.+......+.+..|++++++||
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA 137 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSA 137 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEEC
Confidence 4566665 7999999999987432 22333344333 799999999999864 33333456788888999999999
Q ss_pred CCCCCcHHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARKL 103 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i 103 (153)
++|.|++++++++.+.+
T Consensus 138 ~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.00 E-value=5.7e-09 Score=74.40 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=65.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC---hHHHHHHHH--------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRK-------- 76 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~---~~~~~~~~~-------- 76 (153)
..+..+++++|++++|+|.+...+... ..++..+.. .+.|+++|+||+|+.. .... .......+.
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 457788999999999999987654432 233333433 3799999999999975 2211 112222222
Q ss_pred ------cCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 77 ------KNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 77 ------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
...+++++||++|.|+++++.++.+.+.
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3467999999999999999999998863
No 179
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.00 E-value=1.9e-09 Score=85.51 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=67.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HH----HHHHHcCC---c
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---Q 80 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~----~~~~~~~~---~ 80 (153)
.+...|+++++++++|+|+.+.+ ..|..++.+...+.|+++|+||+|+..+.+..+ .. ++++..++ .
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~ 129 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVD 129 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCc
Confidence 36778889999999999997654 235556665545789999999999976444322 22 34666776 4
Q ss_pred eEEecCCCCCCcHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
++.+||++|.|++++|..+.+.
T Consensus 130 i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 130 IILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EEEecCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999754
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.00 E-value=3.5e-09 Score=89.02 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=69.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc---eEEecC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEISA 86 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~---~~e~Sa 86 (153)
.+..+++.+|++|+|+|.++.........|.... . .++|+++|+||+|+.+.........+...+++. ++.+||
T Consensus 90 ~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSA 166 (600)
T PRK05433 90 EVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSA 166 (600)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEec
Confidence 4567899999999999999865555555665332 2 278999999999986432222233455555654 899999
Q ss_pred CCCCCcHHHHHHHHHHHhC
Q 031782 87 KSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~ 105 (153)
++|.|+++++++|+..++.
T Consensus 167 ktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 167 KTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCCCCHHHHHHHHHHhCcc
Confidence 9999999999999988864
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.00 E-value=4.1e-09 Score=77.18 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=58.4
Q ss_pred HhhhhcCcEEEEEEeCCCh----hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cC---hHHHHHHHH---cCCc
Q 031782 12 LICSIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK---AKQVTFHRK---KNLQ 80 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~---~~~~~~~~~---~~~~ 80 (153)
...+.++|++++|+|.+++ .++..+.. +... ...|+++|+||+|+.+.. .. .....+... .+++
T Consensus 101 ~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~ 175 (203)
T cd01888 101 LSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAP 175 (203)
T ss_pred HHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCc
Confidence 3445567999999999873 23333222 2222 134789999999996421 11 112223332 2567
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++.+||++|+|++++|..|...+..
T Consensus 176 i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 176 IIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999999987644
No 182
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.98 E-value=3.6e-09 Score=72.45 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=66.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHH-----HHHHHHcCCceEE
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYE 83 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~-----~~~~~~~~~~~~e 83 (153)
.....++..+|++++|+|.++..+..... |....... +.|+++|+||+|+......... .......+.++++
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~~--~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEK-LLELLRER--GKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA 143 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHhc--CCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEE
Confidence 45667899999999999999876655544 44444333 7999999999998753211111 1223334578999
Q ss_pred ecCCCCCCcHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~ 102 (153)
+||+++.|+++++.++.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999999865
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.96 E-value=1.9e-08 Score=86.15 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHH-HHHHHHc----CCceEEec
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKK----NLQYYEIS 85 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~-~~~~~~~----~~~~~e~S 85 (153)
+..+++.+|++++|+|.++..++.....| ..+... +.|+++|+||+|+.+....... ..+...+ ..+++.+|
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVM-SMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 45668999999999999998777766533 344333 7899999999999642211111 1222221 24679999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|++++|..+.+.+.+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.92 E-value=3.4e-08 Score=80.03 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHH----cCCceEEec
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----KNLQYYEIS 85 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~----~~~~~~e~S 85 (153)
+..+++.+|++|+|+|.++..+..+.. +...+... +.|+++|+||+|+.+.....+ ...+... ..++++++|
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 345889999999999999876655543 33333333 689999999999874221111 1122222 247899999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|+++++..+.+....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999876643
No 185
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.90 E-value=1.5e-08 Score=73.31 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=58.3
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-c---ChHHH-HHHH------HcCCceEEe
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQV-TFHR------KKNLQYYEI 84 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v---~~~~~-~~~~------~~~~~~~e~ 84 (153)
..+|++++|+|.++.........|. +... .+.|+++|+||+|+.... . ..+.. .+.. ..+++++.+
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~i 166 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPV 166 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEE
Confidence 4568999999998754443333332 1122 267999999999986421 1 11111 1111 135789999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|+++++.+|..++..
T Consensus 167 Sa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 167 SAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred eccCCCCHHHHHHHHHhcccc
Confidence 999999999999999988853
No 186
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.89 E-value=4.5e-09 Score=74.06 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=64.7
Q ss_pred hhhhHhhh--hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEe
Q 031782 8 VLIILICS--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~ 84 (153)
-.+++.|+ ...|++|+|.|.++.+.- ..+..++.+. ++|+++|.||+|... .........+.+..|++++.+
T Consensus 67 e~v~~~~l~~~~~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~ 141 (156)
T PF02421_consen 67 ERVARDYLLSEKPDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPV 141 (156)
T ss_dssp HHHHHHHHHHTSSSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEE
T ss_pred HHHHHHHHhhcCCCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEE
Confidence 35566666 589999999999975321 2233445555 799999999999875 333333567888899999999
Q ss_pred cCCCCCCcHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYL 99 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l 99 (153)
||++++|+++++..+
T Consensus 142 sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 142 SARTGEGIDELKDAI 156 (156)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred EeCCCcCHHHHHhhC
Confidence 999999999998865
No 187
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-08 Score=70.06 Aligned_cols=95 Identities=15% Similarity=0.080 Sum_probs=70.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHH-----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~-----~~~~~~~~ 81 (153)
.+.++||.++.++|||.|..+++..+...+-+..+.... .+.++++.+||.|+....-..+...+ ++.....+
T Consensus 76 plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~v 155 (180)
T KOG0071|consen 76 PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYV 155 (180)
T ss_pred HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEe
Confidence 468899999999999999999877777665444433322 47899999999999874333333322 23333457
Q ss_pred EEecCCCCCCcHHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
..+||.+|.|+.+-|.||...+
T Consensus 156 qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 156 QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred eccccccchhHHHHHHHHHhhc
Confidence 8999999999999999998765
No 188
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.87 E-value=2.5e-08 Score=69.15 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=63.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHH-HHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcC-CceEEec
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEIS 85 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~S 85 (153)
....++.++|++++|+|.++. +..... +...+... +.|+++|+||+|+.. .....+ ...+....+ .+++.+|
T Consensus 75 ~~~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 75 AAWSALKDVDLVLFVVDASEP--IGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HHHHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE
Confidence 345678999999999999986 233333 33444433 689999999999873 222222 334444443 6899999
Q ss_pred CCCCCCcHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARK 102 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~ 102 (153)
++++.|+++++..|.+.
T Consensus 151 ~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 151 ALKGENVDELLEEIVKY 167 (168)
T ss_pred eccCCChHHHHHHHHhh
Confidence 99999999999999764
No 189
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.86 E-value=6.4e-09 Score=71.83 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHHHcC--------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-------- 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-------- 78 (153)
.+..-|+++++++++|+|..+++.+.....-+..+.... .++|+++.|||.|+.+.-- ...+....|
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~---~~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS---KIALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc---HHHHHHHhCccccccce
Confidence 467789999999999999999877665554443333332 5899999999999875321 123333333
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+.+|.+|++...|++-+..||++.-
T Consensus 157 vcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 190
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.85 E-value=9.5e-09 Score=68.43 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=40.1
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHH---HHHHHHhhcCCCcEEEEeeCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~---~~~~i~~~~~~~p~vlv~nK~D 60 (153)
..++.++|++++|||++++.||..+.+ |+..+.....++|+++||||.|
T Consensus 68 ~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 68 QFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 445899999999999999999998754 5666665556799999999998
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.84 E-value=2.3e-08 Score=85.68 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=65.0
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEe
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEI 84 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~ 84 (153)
....+..+++.||++|+|+|.++. +.... .|...+... +.|+++|+||+|+.... .....+. ..+. ..+++
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--~~~~~~~-~lg~~~~~~i 416 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRRA--GKPVVLAVNKIDDQASE--YDAAEFW-KLGLGEPYPI 416 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECcccccch--hhHHHHH-HcCCCCeEEE
Confidence 344556789999999999999863 22332 455555443 79999999999985421 1112222 2232 36799
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|+.++|.+|+..+..
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECCCCCCchHHHHHHHHhccc
Confidence 999999999999999998865
No 192
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.83 E-value=3.3e-08 Score=71.38 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=61.3
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh---HHH-HHHHHcC------Cc
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKKN------LQ 80 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~---~~~-~~~~~~~------~~ 80 (153)
+...++.+|++|+|+|..+..... ....+..+... ++|+++|.||+|+....... +.. .+.+..+ ++
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 163 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVP 163 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEE
T ss_pred ccceecccccceeeeecccccccc-ccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccce
Confidence 344578999999999998653322 22333344444 78999999999997322211 111 3333332 46
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHh
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++.+||.+|.|++++++.|.+.++
T Consensus 164 vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 164 VIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEEEecCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999998775
No 193
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.81 E-value=5.6e-08 Score=78.53 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=66.2
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEec
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEIS 85 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~S 85 (153)
....+..+++.+|++++|+|.++..+..+. .+...+.+. +.|+++|+||+|+.+.... ... ....+. .++++|
T Consensus 68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~~--~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vS 141 (429)
T TIGR03594 68 IREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRKS--GKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPIS 141 (429)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHHh--CCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEe
Confidence 345577789999999999999874332221 122223333 7899999999998643211 122 334565 799999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|+.+++.++...+..
T Consensus 142 a~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCcCCChHHHHHHHHHhcCc
Confidence 99999999999999988855
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.79 E-value=4.4e-08 Score=79.38 Aligned_cols=87 Identities=23% Similarity=0.248 Sum_probs=61.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHh--hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~S 85 (153)
.....++.++|++|+|+|.++..+.. .+..|+.. . +.|+++|+||+|+.+.. ....++ ...++ .++++|
T Consensus 72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iS 143 (435)
T PRK00093 72 EQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPIS 143 (435)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEE
Confidence 34567889999999999998753322 23334332 2 78999999999975421 112222 34565 489999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|++|.|+.++|+.+....
T Consensus 144 a~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 144 AEHGRGIGDLLDAILEEL 161 (435)
T ss_pred eeCCCCHHHHHHHHHhhC
Confidence 999999999999998743
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.78 E-value=6.4e-08 Score=81.21 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=65.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcc-c---ChHHHHHHHHc---
Q 031782 9 LIILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V---KAKQVTFHRKK--- 77 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~-v---~~~~~~~~~~~--- 77 (153)
.....++.++|++++|+|.++ +.+++.+ ..+... ++| +++|+||+|+.+.. + ..+...+.+..
T Consensus 65 ~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~ 138 (581)
T TIGR00475 65 SNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL 138 (581)
T ss_pred HHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 345567789999999999997 3444433 223222 677 99999999997522 1 12233444443
Q ss_pred -CCceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 78 -NLQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 78 -~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++++++||++|.|+++++..|...+...
T Consensus 139 ~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 139 KNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 47899999999999999999998777543
No 196
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.75 E-value=3.7e-08 Score=68.05 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=54.4
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHh--hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
....++++|++++|+|.+++.+.. .+..|+... ..++|+++|.||+|+..+..........+..+..++.+||++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 456788999999999999876544 344454433 136899999999998643211122344555677899999998
Q ss_pred CCC
Q 031782 89 NYN 91 (153)
Q Consensus 89 ~~~ 91 (153)
+.+
T Consensus 82 ~~~ 84 (141)
T cd01857 82 ENA 84 (141)
T ss_pred CCc
Confidence 764
No 197
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.74 E-value=7e-08 Score=68.79 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=60.8
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
....+++||++++|+|.+++...... .+...+ .+.|+++|.||+|+.+........++.+..+..++.+||+++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 87 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 46678899999999999876432221 122222 2579999999999964211111112233334568999999999
Q ss_pred CcHHHHHHHHHHHh
Q 031782 91 NFEKPFLYLARKLA 104 (153)
Q Consensus 91 ~v~~lf~~l~~~i~ 104 (153)
|++++...+...+.
T Consensus 88 gi~~L~~~l~~~l~ 101 (171)
T cd01856 88 GVKKLLKAAKKLLK 101 (171)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988764
No 198
>COG1159 Era GTPase [General function prediction only]
Probab=98.73 E-value=1e-07 Score=72.85 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=75.4
Q ss_pred CCcchhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCCCccc-ChHHHHHH-HHcC
Q 031782 2 PLSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFH-RKKN 78 (153)
Q Consensus 2 ~l~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~~~~~-~~~~ 78 (153)
.||..|+....+.+.++|+++||.|.+.. +...++|+ +.++. .+.|++++.||+|...... .....+++ ....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC
Confidence 37889999999999999999999999874 33344454 34443 2689999999999865332 12222222 2222
Q ss_pred -CceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 79 -LQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 79 -~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
..++.+||++|.|++.+.+.+...++...
T Consensus 146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 146 FKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 46899999999999999999999997654
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.71 E-value=9.8e-08 Score=81.68 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=62.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHH------HHHcC
Q 031782 8 VLIILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~------~~~~~ 78 (153)
..++..++..+|++|+|+|.++. .+++.+. .+.. .++|+++++||+|+...........+ ...++
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhC
Confidence 34566789999999999999874 3443322 2222 37899999999998753221111111 22333
Q ss_pred --CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 79 --LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 79 --~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++++++||++|.|+++++.+|....
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 6899999999999999999998754
No 200
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.68 E-value=2.3e-07 Score=66.87 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=59.8
Q ss_pred hhhHhhhhcC---cEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccC---hHHHHHHHHcCCce
Q 031782 9 LIILICSIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~a---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~---~~~~~~~~~~~~~~ 81 (153)
.+...|++.+ +++++|+|.+++.+.... .+...+.. .+.|+++++||+|+.+. ... ..........+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 3456677765 678888998875333221 11122222 26899999999998642 111 11223333336789
Q ss_pred EEecCCCCCCcHHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+++||+++.|++++++.|.+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 201
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.68 E-value=2.9e-08 Score=81.52 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=76.1
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhc---CCCcEEEEeeCCCCCCcccC---hHHHHHHHHcC-C-ce
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKN-L-QY 81 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~---~~~~~~~~~~~-~-~~ 81 (153)
...-++.||++.+||+++++.+.+.+. .|+..+++.. .++|+|+||||+|+...... .....+...+. + .+
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtc 152 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETC 152 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHH
Confidence 356688999999999999999999886 7999999886 58999999999998752211 12233444433 2 37
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++|||++..++.++|...-+.+..-.
T Consensus 153 iecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 153 IECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred HhhhhhhhhhhHhhhhhhhheeeccC
Confidence 99999999999999999888886543
No 202
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=9.9e-08 Score=67.01 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=56.9
Q ss_pred hhhhcCcEEEEEEeCCChhh--HhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSN 89 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~ 89 (153)
..++++|++++|.|.+++.. ...+..+ +.....+.|+++|.||+|+..+..... ...+.+.+....+.+||+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHH---HHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 45789999999999998632 2222333 322223589999999999964221111 11222222223477999999
Q ss_pred CCcHHHHHHHHHHH
Q 031782 90 YNFEKPFLYLARKL 103 (153)
Q Consensus 90 ~~v~~lf~~l~~~i 103 (153)
.|++++++.+...+
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999997654
No 203
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.65 E-value=1.9e-07 Score=65.50 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred cEEEEEEeCCChhhHhhHHHHHH--HHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 19 QCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 19 d~~ilv~d~~~~~s~~~~~~~~~--~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
|++++|+|.+++.+... .|+. .+.. .++|+++|.||+|+........ ...+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988765443 2443 2222 3789999999999954211111 11233333566899999999999999
Q ss_pred HHHHHHHH
Q 031782 96 FLYLARKL 103 (153)
Q Consensus 96 f~~l~~~i 103 (153)
++.+....
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987654
No 204
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.63 E-value=2.5e-07 Score=79.83 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=69.0
Q ss_pred hhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEecC
Q 031782 10 IILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISA 86 (153)
Q Consensus 10 ~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sa 86 (153)
+.+.|+. .+|++++|+|.++.+.- ..|..++.+. ++|+++|.||+|+.+ +.+......+.+.+|++++.+||
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA 150 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVS 150 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEe
Confidence 4556654 89999999999985432 2344455554 799999999999874 44444456788889999999999
Q ss_pred CCCCCcHHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARKL 103 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i 103 (153)
++|+|++++.+.+....
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988765
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.62 E-value=2.9e-07 Score=77.29 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc--c-c-----------ChHH-
Q 031782 9 LIILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--Q-V-----------KAKQ- 70 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~--~-v-----------~~~~- 70 (153)
.++..+++.+|++++|+|.++ +.+++.+..+ .. .++|+++++||+|+... . . ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 456778899999999999987 4555544322 22 27899999999998631 0 0 0000
Q ss_pred -----------HHHHH------------Hc--CCceEEecCCCCCCcHHHHHHHHH
Q 031782 71 -----------VTFHR------------KK--NLQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 71 -----------~~~~~------------~~--~~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
..++. .+ .++++.+||++|+|++++..+|..
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 01110 12 267999999999999999998864
No 206
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.61 E-value=2e-07 Score=66.67 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=51.9
Q ss_pred hHhhhhc---CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-c---ChHHHHHHHHcC--Cce
Q 031782 11 ILICSIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRKKN--LQY 81 (153)
Q Consensus 11 ~~~~~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v---~~~~~~~~~~~~--~~~ 81 (153)
...|++. ++++++|+|.+++-+..... ++..+... +.|+++|+||+|+.... . ..+..+.....+ .++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 4567764 57999999998754444332 22333333 78999999999986421 1 111223344433 479
Q ss_pred EEecCCCCCCcH
Q 031782 82 YEISAKSNYNFE 93 (153)
Q Consensus 82 ~e~Sa~~~~~v~ 93 (153)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 207
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.60 E-value=4.5e-07 Score=76.14 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=58.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHH-------HHcC--C
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-------RKKN--L 79 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~-------~~~~--~ 79 (153)
.++..++..+|++|+|+|.++...-+....| ..... .++|+++++||+|+.+... .+..... ..++ .
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCc
Confidence 3556678899999999999863211111122 22222 3789999999999864221 1111222 2222 4
Q ss_pred ceEEecCCCCCCcHHHHHHHHH
Q 031782 80 QYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
+++++||++|+|++++|.++..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 6999999999999999999874
No 208
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.59 E-value=3.5e-07 Score=78.88 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=60.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---cChHHH---HHHHHcC-
Q 031782 9 LIILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQV---TFHRKKN- 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---v~~~~~---~~~~~~~- 78 (153)
.++..++..+|++|+|||.++. .++.. | ..... .++|+++++||+|+.+.. +..+.. .++..++
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~---i-~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEA---I-NHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHH---H-HHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCC
Confidence 4556778899999999999873 33332 2 12222 379999999999996422 111111 1233343
Q ss_pred -CceEEecCCCCCCcHHHHHHHHHH
Q 031782 79 -LQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 79 -~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
++++++||++|.|++++|.+|...
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhhhh
Confidence 689999999999999999998753
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.58 E-value=3.2e-07 Score=74.36 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=54.4
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHH-HHHHHHhhcCCCcEEEEeeCCCCCC-cc-----cChHHHHHHHHcC-----C
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQ-----VKAKQVTFHRKKN-----L 79 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~p~vlv~nK~Dl~~-~~-----v~~~~~~~~~~~~-----~ 79 (153)
..++.++|++++|+|.++.+++..... +...+.......++++|+||+|+.+ .. +..+...+++..+ +
T Consensus 103 ~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~ 182 (426)
T TIGR00483 103 ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTV 182 (426)
T ss_pred HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 345688999999999998754322111 1111222222357899999999964 11 1122345566555 5
Q ss_pred ceEEecCCCCCCcHHHH
Q 031782 80 QYYEISAKSNYNFEKPF 96 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf 96 (153)
+++++||++|.|+.+++
T Consensus 183 ~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 183 PFIPISAWNGDNVIKKS 199 (426)
T ss_pred eEEEeeccccccccccc
Confidence 79999999999998754
No 210
>COG2262 HflX GTPases [General function prediction only]
Probab=98.57 E-value=9.2e-07 Score=70.29 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=66.2
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-cCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
-...||++++|+|.+++.....+..-...+... ..++|+++|.||+|+...... ...+..... ..+.+||++|.|+
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~--~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI--LAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh--hhhhhhcCC-CeEEEEeccCcCH
Confidence 345899999999999997666665544444444 257999999999997643221 111111112 5899999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 031782 93 EKPFLYLARKLAGDPN 108 (153)
Q Consensus 93 ~~lf~~l~~~i~~~~~ 108 (153)
+.++..|...+.....
T Consensus 345 ~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 345 DLLRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999875543
No 211
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=62.88 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=70.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHH-HH-cCCceEEecC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-RK-KNLQYYEISA 86 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~-~~-~~~~~~e~Sa 86 (153)
-++..+.+++.++|++.|.+.+..| .....+..+.... .+|+++..||.||.+...+....+.. .. ..+++++++|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence 3567889999999999999999888 4444455554442 39999999999998765555544433 33 3789999999
Q ss_pred CCCCCcHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARK 102 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~ 102 (153)
..+++..+.+..+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999888887765
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.55 E-value=4.7e-07 Score=73.03 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=58.7
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC----hHHHHHHHHc---CCceEEe
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK---NLQYYEI 84 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~----~~~~~~~~~~---~~~~~e~ 84 (153)
......+|++++|+|.++........+.+..+... .-.++++|+||+|+.+.... .+...+.... +++++.+
T Consensus 98 ~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~v 176 (406)
T TIGR03680 98 LSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPV 176 (406)
T ss_pred HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEE
Confidence 34445679999999999642111222222223222 23468999999999752211 1122333322 5689999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||++|.|+++++++|...+.
T Consensus 177 SA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 177 SALHNANIDALLEAIEKFIP 196 (406)
T ss_pred ECCCCCChHHHHHHHHHhCC
Confidence 99999999999999998764
No 213
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=5.7e-07 Score=68.97 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=61.8
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
....++.||++++|+|...+.+... .++.+.. .+.|+++|.||+|+.+........++.+..+..++.+||+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 4567889999999999987644332 2222222 2689999999999854211111112233345678999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 031782 91 NFEKPFLYLARKLAG 105 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~ 105 (153)
|++++.+.+...+..
T Consensus 90 gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 90 GVKKIIKAAKKLLKE 104 (276)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999998887754
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.54 E-value=7.9e-07 Score=71.83 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred hhHhhhhc---CcEEEEEEeCCCh----hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC----hHHHHHHHH--
Q 031782 10 IILICSIH---GQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRK-- 76 (153)
Q Consensus 10 ~~~~~~~~---ad~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~----~~~~~~~~~-- 76 (153)
+...|+.+ +|++++|+|.++. .+...+. .+... .-.|+++|+||+|+.+.... .+...++..
T Consensus 98 f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~ 172 (411)
T PRK04000 98 LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTV 172 (411)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhcccc
Confidence 34566665 4999999999953 2333222 22222 12468999999999753211 112233322
Q ss_pred -cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 77 -KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 77 -~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+.+++.+||++|.|++++++.|...+..
T Consensus 173 ~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 173 AENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred CCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 24789999999999999999999987643
No 215
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.54 E-value=5.2e-07 Score=69.68 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred hhhHhhh---hcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChHHHHHHHHcCC
Q 031782 9 LIILICS---IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 79 (153)
Q Consensus 9 ~~~~~~~---~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~ 79 (153)
.+...|+ +.|..++||+|++.. +.++++..+..++..+. .+.|.++|+||+|+.+.+- ....++++...-
T Consensus 263 GlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 263 GLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-NLLSSLAKRLQN 341 (366)
T ss_pred cccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-HHHHHHHHHcCC
Confidence 3444444 478999999999988 88888888777777664 5789999999999852110 012455665543
Q ss_pred -ceEEecCCCCCCcHHHHHHHHH
Q 031782 80 -QYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 80 -~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
.++.+||++++|++++...|..
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhh
Confidence 3899999999999999887754
No 216
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=8.5e-07 Score=70.60 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=59.5
Q ss_pred hhcCc-EEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-H----HHHHHHcCC---ceEEec
Q 031782 15 SIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---QYYEIS 85 (153)
Q Consensus 15 ~~~ad-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~----~~~~~~~~~---~~~e~S 85 (153)
+..++ .+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.......+ . ..+++..|+ .++.+|
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vS 140 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLIS 140 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEE
Confidence 34555 889999998743 235555655545789999999999975433222 2 234556665 589999
Q ss_pred CCCCCCcHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARK 102 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~ 102 (153)
|+++.|+++++..+.+.
T Consensus 141 Ak~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 141 AQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999765
No 217
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.53 E-value=6.6e-07 Score=75.32 Aligned_cols=93 Identities=10% Similarity=0.120 Sum_probs=67.5
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---cChHHHHHH-------HHcCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFH-------RKKNL 79 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---v~~~~~~~~-------~~~~~ 79 (153)
....+++.+|++++|+|.++. .......|+..+... ++|+++|+||+|+.+.. +..+...+. ....+
T Consensus 80 ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 456788999999999999863 344455666666655 78999999999986422 222222322 22346
Q ss_pred ceEEecCCCCC----------CcHHHHHHHHHHHhC
Q 031782 80 QYYEISAKSNY----------NFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e~Sa~~~~----------~v~~lf~~l~~~i~~ 105 (153)
+++.+||++|. |+..+|..++..++.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 89999999995 799999999988864
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.51 E-value=6.2e-07 Score=62.17 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=56.6
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC-hHHHHHHHHcCC-ceEEecCCCCCCcHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEK 94 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~-~~~~~~~~~~~~-~~~e~Sa~~~~~v~~ 94 (153)
+||+++++.|.+++.+.. -..+.... +.|+|-|.||+|+...... ....++.+..|+ ..|++|+.+|+|+++
T Consensus 63 dad~V~ll~dat~~~~~~-----pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 63 DADVVLLLQDATEPRSVF-----PPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEE 136 (143)
T ss_pred hCCEEEEEecCCCCCccC-----Cchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence 899999999999864321 11232222 6899999999999832222 234566677774 479999999999999
Q ss_pred HHHHHH
Q 031782 95 PFLYLA 100 (153)
Q Consensus 95 lf~~l~ 100 (153)
+..+|-
T Consensus 137 L~~~L~ 142 (143)
T PF10662_consen 137 LKDYLE 142 (143)
T ss_pred HHHHHh
Confidence 998874
No 219
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.49 E-value=1.3e-06 Score=65.47 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=37.9
Q ss_pred CcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 50 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 50 ~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+|+++|+||+|+... .+...++.. ..++++||++|.|++++|+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~---~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISI---EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCH---HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 589999999998531 122344433 4689999999999999999998876
No 220
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=1.2e-06 Score=70.88 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=70.1
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc---eEEecCCCCCC
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEISAKSNYN 91 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~---~~e~Sa~~~~~ 91 (153)
+.-|.++++|+|.+..---+.+.+.+..+.+ +..++-|.||+||+...+.....++..-.|+. .+.+|||+|.|
T Consensus 97 LAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~g 173 (603)
T COG0481 97 LAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIG 173 (603)
T ss_pred HhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCC
Confidence 4568999999999986545555555444443 78899999999998766655566676777764 78999999999
Q ss_pred cHHHHHHHHHHHhCCC
Q 031782 92 FEKPFLYLARKLAGDP 107 (153)
Q Consensus 92 v~~lf~~l~~~i~~~~ 107 (153)
|+++++.++..++.-.
T Consensus 174 I~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 174 IEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHHHhhCCCCC
Confidence 9999999999997543
No 221
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.45 E-value=2.9e-07 Score=63.36 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=68.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HH----HHHHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~----~~~~~~~~~~ 81 (153)
.....||.+.|++|+|+|.+++..|+.+..-+.++.... ..+|+++.+||.|+....-..+ .. ...+.....+
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEe
Confidence 467899999999999999999999998876555554432 4799999999999864221111 11 1112222356
Q ss_pred EEecCCCCCCcHHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
.+|||.+++|+.+...|+....
T Consensus 157 q~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeCccccccCccCcchhhhcCC
Confidence 7999999999999888887543
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.44 E-value=1.7e-06 Score=60.01 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=57.1
Q ss_pred hhHhhhhc---CcEEEEEEeCCChh--hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh----HHHHHHH--HcC
Q 031782 10 IILICSIH---GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR--KKN 78 (153)
Q Consensus 10 ~~~~~~~~---ad~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~----~~~~~~~--~~~ 78 (153)
....|+.. ++++++++|.+... ....+..|+.. . +.|+++|+||+|+....... ......+ ...
T Consensus 71 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~ 145 (170)
T cd01876 71 LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEID 145 (170)
T ss_pred HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCC
Confidence 34455554 57889999998652 22223344433 2 58999999999985422111 1122222 234
Q ss_pred CceEEecCCCCCCcHHHHHHHHHH
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
.+++++||+++.|+.+++++|.+.
T Consensus 146 ~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 146 PPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CceEEEecCCCCCHHHHHHHHHHh
Confidence 679999999999999999999865
No 223
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.4e-06 Score=71.51 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=65.3
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC---CceEEecCCCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN---LQYYEISAKSNY 90 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~---~~~~e~Sa~~~~ 90 (153)
.+.-|+++|+|+|.+...--+.+..++..+.. +..+|.|.||+|+....+.....++..-++ .+++.+|||+|.
T Consensus 145 slaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 145 SLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGL 221 (650)
T ss_pred hhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCc
Confidence 34579999999999975444444444444432 688999999999987544333333333333 469999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 031782 91 NFEKPFLYLARKLAG 105 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~ 105 (153)
|+++++.++++.++-
T Consensus 222 ~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 222 NVEELLEAIIRRVPP 236 (650)
T ss_pred cHHHHHHHHHhhCCC
Confidence 999999999999864
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.43 E-value=2.2e-06 Score=72.47 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=59.8
Q ss_pred hhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcc-cC---hHHHHHHHHcC---
Q 031782 10 IILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-VK---AKQVTFHRKKN--- 78 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~-v~---~~~~~~~~~~~--- 78 (153)
.....+.++|++++|+|.++. .+.+.+ ..+... ++| +++|+||+|+.+.. .. .+...+....+
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~ 140 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAE 140 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 344567899999999999873 333322 223222 455 57999999996521 11 12233444433
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.+++.+||++|.|+++++..|.....
T Consensus 141 ~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 141 AKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 67999999999999999999987653
No 225
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.42 E-value=1.8e-06 Score=66.62 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
....++.||++++|+|...+.+... .++.... .+.|+++|.||+|+.+.........+.+..+..++.+||+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 4567789999999999987644332 2232222 2689999999999854211111122233446678999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 031782 91 NFEKPFLYLARKLAG 105 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~ 105 (153)
|++++...+...+..
T Consensus 93 gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 93 GVKKILKAAKKLLKE 107 (287)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999988877654
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.41 E-value=2.4e-06 Score=63.66 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=52.9
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChHHHHHHHH-------------------
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRK------------------- 76 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~~------------------- 76 (153)
.+|++++|+|.+.... .....++..+... ++|+++|.||+|+.++. .......+.+.
T Consensus 109 ~~D~~llVvda~~g~~-~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~ 185 (224)
T cd04165 109 APDYAMLVVAANAGII-GMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDV 185 (224)
T ss_pred CCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccce
Confidence 5899999999876432 2222344444444 78999999999986432 11111122111
Q ss_pred ----------cCCceEEecCCCCCCcHHHHHHHH
Q 031782 77 ----------KNLQYYEISAKSNYNFEKPFLYLA 100 (153)
Q Consensus 77 ----------~~~~~~e~Sa~~~~~v~~lf~~l~ 100 (153)
..++++.+||.+|+|++++...|.
T Consensus 186 ~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 186 VLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred eehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 124899999999999998887764
No 227
>PRK09866 hypothetical protein; Provisional
Probab=98.40 E-value=2.7e-06 Score=71.53 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc--ChHHHHHHH----HcC---CceEE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHR----KKN---LQYYE 83 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v--~~~~~~~~~----~~~---~~~~e 83 (153)
..+..||+++||+|.+...+..+. ...+.+.......|+++|.||+|+.++.. ......+.. ..+ ..+|.
T Consensus 254 eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfP 332 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFP 332 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEE
Confidence 379999999999999874333321 23334443321259999999999864221 122223221 112 35899
Q ss_pred ecCCCCCCcHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~ 101 (153)
+||+.|.|++.++..|..
T Consensus 333 VSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 333 VSSMWGYLANRARHELAN 350 (741)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999999999998876
No 228
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.39 E-value=1.5e-06 Score=70.41 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=51.5
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcc------cChHHHHHHHHcC-----Cc
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKN-----LQ 80 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~------v~~~~~~~~~~~~-----~~ 80 (153)
..+.++|++++|+|.+++.++.... .++..+... ...++++++||+|+.+.. ...+...++...+ ++
T Consensus 103 ~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ 181 (425)
T PRK12317 103 TGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIP 181 (425)
T ss_pred hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcce
Confidence 3357899999999998732222222 222222222 224689999999996411 1112234444444 46
Q ss_pred eEEecCCCCCCcHHHH
Q 031782 81 YYEISAKSNYNFEKPF 96 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf 96 (153)
++.+||++|.|+++++
T Consensus 182 ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 182 FIPVSAFEGDNVVKKS 197 (425)
T ss_pred EEEeecccCCCccccc
Confidence 8999999999998754
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.36 E-value=4.6e-06 Score=61.09 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=43.3
Q ss_pred hhhHhhhhcC-cEEEEEEeCCCh-hhHhhHHHHHHHHHhh----cCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHG-QCAIIMFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~a-d~~ilv~d~~~~-~s~~~~~~~~~~i~~~----~~~~p~vlv~nK~Dl~~ 63 (153)
.....||+++ +++|+|+|.++. .++.....|+..+... ..++|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 63 DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 4456789998 999999999997 6788777776554332 24799999999999864
No 230
>PRK01889 GTPase RsgA; Reviewed
Probab=98.35 E-value=2.7e-06 Score=67.59 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=59.7
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHH-HcCCceEEecCCCCCCcH
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~-~~~~~~~e~Sa~~~~~v~ 93 (153)
..|+|.+++|++++..-+...++.++..+... +++.++|.||+||.+.. ......+.. ..+++++.+|++++.|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~-~~~~~~~~~~~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDA-EEKIAEVEALAPGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCH-HHHHHHHHHhCCCCcEEEEECCCCccHH
Confidence 47899999999997443455566666655554 78889999999997431 111122222 346889999999999999
Q ss_pred HHHHHHH
Q 031782 94 KPFLYLA 100 (153)
Q Consensus 94 ~lf~~l~ 100 (153)
++..+|.
T Consensus 187 ~L~~~L~ 193 (356)
T PRK01889 187 VLAAWLS 193 (356)
T ss_pred HHHHHhh
Confidence 9888875
No 231
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=68.34 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=66.8
Q ss_pred CcchhhhhhHhhhhcCcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC-C
Q 031782 3 LSCFNVLIILICSIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-L 79 (153)
Q Consensus 3 l~~~~~~~~~~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-~ 79 (153)
|+..+..-+...+..||++|||+|.... +.-+.+..|+ +. .++|+++|+||+|-... .....+| ..+| -
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~L---r~--~~kpviLvvNK~D~~~~--e~~~~ef-yslG~g 140 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKIL---RR--SKKPVILVVNKIDNLKA--EELAYEF-YSLGFG 140 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---Hh--cCCCEEEEEEcccCchh--hhhHHHH-HhcCCC
Confidence 5667778888899999999999999763 2222333333 22 26999999999996411 0011222 3344 4
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
..+.+||..|.|+.++..+++..+.
T Consensus 141 ~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 141 EPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred CceEeehhhccCHHHHHHHHHhhcC
Confidence 6899999999999999999999985
No 232
>PRK10218 GTP-binding protein; Provisional
Probab=98.32 E-value=5.5e-06 Score=69.91 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=63.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC---hHHHHHHH-------HcC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKN 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~---~~~~~~~~-------~~~ 78 (153)
..+..+++.+|++|+|+|.++....+ ...++..+... ++|.++|.||+|+...... .+...+.. ...
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 35677999999999999998753222 23333334333 7899999999998753221 12222221 134
Q ss_pred CceEEecCCCCC----------CcHHHHHHHHHHHhC
Q 031782 79 LQYYEISAKSNY----------NFEKPFLYLARKLAG 105 (153)
Q Consensus 79 ~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~ 105 (153)
++++.+||++|. |+..+++.++..++.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 679999999998 577888888877753
No 233
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.31 E-value=3.3e-06 Score=62.02 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=50.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc------ChHHHHHHHHcCC---ce
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFHRKKNL---QY 81 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v------~~~~~~~~~~~~~---~~ 81 (153)
+..+++.+|++|+|+|.++...-.. ......+... ...++++|+||+|+.+... ..+...+.+..+. ++
T Consensus 94 ~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 171 (208)
T cd04166 94 MVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITF 171 (208)
T ss_pred HHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceE
Confidence 3456789999999999987532111 1111122222 1245788999999864211 1122344555553 48
Q ss_pred EEecCCCCCCcHHH
Q 031782 82 YEISAKSNYNFEKP 95 (153)
Q Consensus 82 ~e~Sa~~~~~v~~l 95 (153)
+.+||++|.|+.+.
T Consensus 172 i~iSA~~g~ni~~~ 185 (208)
T cd04166 172 IPISALDGDNVVSR 185 (208)
T ss_pred EEEeCCCCCCCccC
Confidence 99999999998743
No 234
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.31 E-value=2.3e-07 Score=61.77 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=56.0
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
....+++.++.++++|+.++..++..+ |...+...+ .+.|.++++||.|+.+.. .++...+..++++|+++
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~~~~~~~~~~~~s~~~ 110 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER------QVATEEGLEFAETSAKT 110 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC------cCCHHHHHHHHHHhCCC
Confidence 356788999999999999999998766 877666543 468899999999984321 11222233567889999
Q ss_pred CCCcH
Q 031782 89 NYNFE 93 (153)
Q Consensus 89 ~~~v~ 93 (153)
+.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 99974
No 235
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.29 E-value=4.7e-06 Score=67.30 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=63.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
...+.-++.||.+++|+|.+.+.+-.+.. .+. ....+.|+++|.||+||........ +....+.+++.+||++
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~~~~---~~~~~~~~~i~iSa~t 360 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIELES---EKLANGDAIISISAKT 360 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccccch---hhccCCCceEEEEecC
Confidence 34566788999999999999852222211 111 2234789999999999975322111 1112235689999999
Q ss_pred CCCcHHHHHHHHHHHhCC
Q 031782 89 NYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~~ 106 (153)
|+|++.+...|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999999888665
No 236
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.29 E-value=6.6e-06 Score=69.27 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=57.9
Q ss_pred hhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC--c-ccC-----------hH-H-
Q 031782 10 IILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--R-QVK-----------AK-Q- 70 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~--~-~v~-----------~~-~- 70 (153)
++..++..+|++++|+|.++ +.++..+.. +.. .++|+++++||+|+.. . ... .. .
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~ 160 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQ 160 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHH
Confidence 45567788999999999997 556655433 222 2789999999999852 0 000 00 0
Q ss_pred ---------HHHHHH-------------c--CCceEEecCCCCCCcHHHHHHHHH
Q 031782 71 ---------VTFHRK-------------K--NLQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 71 ---------~~~~~~-------------~--~~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
...... + .++++.+||++|+|+++++..+..
T Consensus 161 ~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 161 ELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 001111 1 257899999999999999988764
No 237
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.28 E-value=3.1e-06 Score=61.94 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=52.6
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccCh-HHHHHHHH--cCCceEEecCCCCCCcH
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRK--KNLQYYEISAKSNYNFE 93 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~-~~~~~~~~--~~~~~~e~Sa~~~~~v~ 93 (153)
+|.+|.|+|+++.++... .+...+ ..--++++||+|+.+. .... ...+..+. .+.++++|||++|+|++
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 185 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLD 185 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHH
Confidence 688999999997555221 111111 1223889999999742 1111 12233333 34789999999999999
Q ss_pred HHHHHHHHHHh
Q 031782 94 KPFLYLARKLA 104 (153)
Q Consensus 94 ~lf~~l~~~i~ 104 (153)
++|+++.+.+.
T Consensus 186 el~~~i~~~~~ 196 (199)
T TIGR00101 186 TVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhhcC
Confidence 99999987664
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=6.5e-06 Score=67.36 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=57.3
Q ss_pred hcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHH------HHHcC--CceEEe
Q 031782 16 IHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEI 84 (153)
Q Consensus 16 ~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~ 84 (153)
.=+|++|+|++.++ +.+.+.+. ..+.. +.|+++..||+|..+........++ ...++ ..++.+
T Consensus 77 ~vtDIaILVVa~dDGv~pQTiEAI~----hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 77 SVTDIAILVVAADDGVMPQTIEAIN----HAKAA--GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ccccEEEEEEEccCCcchhHHHHHH----HHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 34799999999997 33444332 23333 8999999999999853332222222 23343 579999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||++|+|+.+++..+.-..
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred eccCCCCHHHHHHHHHHHH
Confidence 9999999999999886554
No 239
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.26 E-value=3.1e-06 Score=62.65 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=47.3
Q ss_pred hhhcCcEEEEEEeCCChh-------hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC----h----HHHHHHHHcC
Q 031782 14 CSIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----A----KQVTFHRKKN 78 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~----~----~~~~~~~~~~ 78 (153)
++..+|++|+|+|.++.. ..+....|. ..... ...|+++|+||+|+...... . +...+....+
T Consensus 97 ~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~ 174 (219)
T cd01883 97 GASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG 174 (219)
T ss_pred HhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcC
Confidence 456699999999999742 111222222 22222 23688999999999732111 1 1112333433
Q ss_pred -----CceEEecCCCCCCcH
Q 031782 79 -----LQYYEISAKSNYNFE 93 (153)
Q Consensus 79 -----~~~~e~Sa~~~~~v~ 93 (153)
++++.|||++|.|+.
T Consensus 175 ~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 175 YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCcCCceEEEeecCcCCCCC
Confidence 569999999999987
No 240
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.26 E-value=6.3e-06 Score=73.00 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=58.0
Q ss_pred hhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC-------------hH-HH
Q 031782 10 IILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-------------AK-QV 71 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~-------------~~-~~ 71 (153)
++..++..+|++++|+|.++ +.++..+. .+... ++|+++|+||+|+.. ..+. .. ..
T Consensus 542 lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~ 615 (1049)
T PRK14845 542 LRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALT 615 (1049)
T ss_pred HHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHH
Confidence 44566788999999999986 44555443 23332 689999999999853 1100 00 00
Q ss_pred H-----------HH------------HHc--CCceEEecCCCCCCcHHHHHHHHHH
Q 031782 72 T-----------FH------------RKK--NLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 72 ~-----------~~------------~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
+ ++ ..+ .++++.+||++|+|++++...|...
T Consensus 616 el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 616 ELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1 11 112 2578999999999999999887643
No 241
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=1e-05 Score=62.46 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=67.5
Q ss_pred hhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh--HHHHHHHHcCCceEEecCCCCC
Q 031782 14 CSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~--~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
-+.+.|-+++|+...+++ +...+++++-..... ++..++|.||+||.+..... +...+....|+.++.+|++++.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~ 153 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcc
Confidence 334577788888888875 677777776544443 88899999999998643332 3456788899999999999999
Q ss_pred CcHHHHHHHHHHHh
Q 031782 91 NFEKPFLYLARKLA 104 (153)
Q Consensus 91 ~v~~lf~~l~~~i~ 104 (153)
+++++...+...+.
T Consensus 154 ~~~~l~~~l~~~~s 167 (301)
T COG1162 154 GLEELAELLAGKIT 167 (301)
T ss_pred cHHHHHHHhcCCeE
Confidence 99999988876653
No 242
>PRK13768 GTPase; Provisional
Probab=98.19 E-value=1.1e-05 Score=61.18 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=57.0
Q ss_pred CcEEEEEEeCCChhhHhhH--HHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHH-----------------------
Q 031782 18 GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT----------------------- 72 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~--~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~----------------------- 72 (153)
++++++|+|.+...+..+. ..|+........++|+++|.||+|+.......+...
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 208 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS 208 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH
Confidence 8999999999654322222 223332222223799999999999875321111111
Q ss_pred -----HHHHcC--CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 -----FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 -----~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
..+..+ .+++.+|++++.|++++..+|.+.+..
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 122334 578999999999999999999887743
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.16 E-value=1.3e-05 Score=62.55 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=66.6
Q ss_pred hhcCcEEEEEEeCCChh---hHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCce-EEec
Q 031782 15 SIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQY-YEIS 85 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~---s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~-~e~S 85 (153)
+..|.++++|+|++..+ ..++......++..+. .+.|.++|+||+|+.. ++.... ...+.+..+... +.+|
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS 314 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS 314 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence 44789999999998644 4666666677777774 5889999999999653 222222 334555555332 2299
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|.++.|++++...+.+.+....
T Consensus 315 a~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 315 ALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hhcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999998886653
No 244
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.15 E-value=1.9e-05 Score=64.71 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=56.6
Q ss_pred hhhcCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh----HHHHHHHH---cCCceEEec
Q 031782 14 CSIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK---KNLQYYEIS 85 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~----~~~~~~~~---~~~~~~e~S 85 (153)
-...+|++++|+|.++. ..-+....+ ..+... .-.++++|.||+|+.+..... +...+... .+.+++.+|
T Consensus 137 g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVS 214 (460)
T PTZ00327 137 GAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPIS 214 (460)
T ss_pred HHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEee
Confidence 34578999999999863 121112222 222222 124688999999987422111 11222222 257899999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|++.+++.|...+..
T Consensus 215 A~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 215 AQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CCCCCCHHHHHHHHHhhCCC
Confidence 99999999999999876643
No 245
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.10 E-value=3.3e-05 Score=62.37 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=65.5
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccC-hH-HHHHHHHc----CC
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AK-QVTFHRKK----NL 79 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~-~~-~~~~~~~~----~~ 79 (153)
.+.-+...+..||++++|.|.+.+-+-++. .....+.+. +.++++|.||+|+.+. ... .+ ...+-..+ ..
T Consensus 250 Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 250 SVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred eehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 344556678899999999999986444332 233334333 7899999999998763 122 12 12222222 36
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+.+.+||++|.++.++|+.+....-
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHH
Confidence 7899999999999999999876654
No 246
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.10 E-value=2.1e-05 Score=57.86 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=38.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
..+..++..+|++++|+|.++..++.. ..|+...... +.|+++|+||+|+.
T Consensus 86 ~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 86 DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccC
Confidence 456788999999999999987655532 3444444332 68999999999975
No 247
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.03 E-value=1.8e-05 Score=64.68 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=53.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHh-------hHHHHHHHHHhhcCCCc-EEEEeeCCCCCCccc--------ChHHHHH
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV--------KAKQVTF 73 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~v--------~~~~~~~ 73 (153)
.+..++..+|++|+|+|.++ .+|+ ...+.+..+... ++| ++++.||+|+.+... ..+...+
T Consensus 101 ~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~ 177 (447)
T PLN00043 101 NMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSY 177 (447)
T ss_pred HHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHH
Confidence 45566789999999999986 2332 222222222222 664 788999999862111 2223455
Q ss_pred HHHcC-----CceEEecCCCCCCcHH
Q 031782 74 HRKKN-----LQYYEISAKSNYNFEK 94 (153)
Q Consensus 74 ~~~~~-----~~~~e~Sa~~~~~v~~ 94 (153)
++..| ++|+.+||.+|+|+.+
T Consensus 178 l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 178 LKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHcCCCcccceEEEEeccccccccc
Confidence 66655 5699999999999854
No 248
>PRK13351 elongation factor G; Reviewed
Probab=98.02 E-value=5e-05 Score=65.15 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=40.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++++|+|.++...+.....|. .+... ++|+++|+||+|+..
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~--~~p~iiviNK~D~~~ 139 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY--GIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc--CCCEEEEEECCCCCC
Confidence 45678899999999999999876666555553 33333 789999999999864
No 249
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.00 E-value=6.9e-05 Score=54.68 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=49.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC-cccC----hHHHHHHHHc-----CC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQVK----AKQVTFHRKK-----NL 79 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~-~~v~----~~~~~~~~~~-----~~ 79 (153)
....+..+|++++|+|.+....-. ....+..+... ++| ++++.||+|+.. .... .+...+.... ++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v 158 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNT 158 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCC
Confidence 344567899999999998642211 22233334333 566 778999999853 2111 1222333333 36
Q ss_pred ceEEecCCCCCCcH
Q 031782 80 QYYEISAKSNYNFE 93 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~ 93 (153)
+++.+||++|.|+.
T Consensus 159 ~iipiSa~~g~n~~ 172 (195)
T cd01884 159 PIVRGSALKALEGD 172 (195)
T ss_pred eEEEeeCccccCCC
Confidence 79999999999853
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.98 E-value=4.1e-05 Score=64.46 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=71.3
Q ss_pred hhhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+++.|+. +.|++|-|.|.+|-+. ++ .+--++.+. ++|++++.|++|..+ +.+.-...++.+..|++++.+|
T Consensus 71 ~Var~~ll~~~~D~ivnVvDAtnLeR--nL-yltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 71 KVARDFLLEGKPDLIVNVVDATNLER--NL-YLTLQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred HHHHHHHhcCCCCEEEEEcccchHHH--HH-HHHHHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEE
Confidence 56777776 4699999999998542 11 111234444 899999999999875 4444446788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|++|.|++++...+.+....+.
T Consensus 146 A~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 146 AKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred eecCCCHHHHHHHHHHhccccc
Confidence 9999999999999987665543
No 251
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=7.8e-05 Score=61.61 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=57.9
Q ss_pred hcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHH------HHHcC--CceEEe
Q 031782 16 IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEI 84 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~ 84 (153)
+-+|++++|+..+|. .+.+.+++ .+. .++|+|+..||||..+..+.....++ ...+| ++++.+
T Consensus 223 ~vtDIvVLVVAadDGVmpQT~EaIkh----Ak~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGVMPQTLEAIKH----AKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccccEEEEEEEccCCccHhHHHHHHH----HHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 357999999999873 34443322 222 48999999999998754333223333 24444 689999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||++|+|++.+.+.++...
T Consensus 297 SAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLA 315 (683)
T ss_pred ecccCCChHHHHHHHHHHH
Confidence 9999999999999887655
No 252
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.93 E-value=5.1e-05 Score=55.68 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCcEEEEeeCCCCCCccc-C-hHHHHHHHHcC--CceEEecCCCCCCcHHHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v-~-~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
..+.++++||+|+.+... . .+.....+..+ .+++++||++|.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999964211 1 12223333333 789999999999999999999864
No 253
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.89 E-value=7e-05 Score=57.95 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=61.2
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc--------------ccChHHHHHHHHc
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKK 77 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~--------------~v~~~~~~~~~~~ 77 (153)
......||++++|+|+++....-. ...+..+..+ ..+|-++|.||.|...+ .......++..++
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 456778999999999997322111 1233444444 37999999999997531 1111011222221
Q ss_pred -CC----------------ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 78 -NL----------------QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 78 -~~----------------~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.. .+|.+||+.|+||+++-++|+.++...
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 12 389999999999999999999988654
No 254
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.89 E-value=5.4e-05 Score=44.19 Aligned_cols=43 Identities=14% Similarity=0.364 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCC
Q 031782 18 GQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 18 ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~D 60 (153)
.++++|++|++.. .|.++--.++.+++....+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 5789999999975 355555667788888877899999999998
No 255
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.84 E-value=0.00016 Score=60.26 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=35.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
.+..+++.+|++|+|+|.++.... ....++...... ++|+++++||+|+.
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~--~iPiiv~iNK~D~~ 144 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLR--DTPIFTFINKLDRD 144 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhc--CCCEEEEEECCccc
Confidence 356688999999999999874211 223333333333 79999999999975
No 256
>PRK12736 elongation factor Tu; Reviewed
Probab=97.84 E-value=0.00012 Score=58.99 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=53.7
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC-cccCh----HHHHHHHHcC-----CceEE
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQVKA----KQVTFHRKKN-----LQYYE 83 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~-~~v~~----~~~~~~~~~~-----~~~~e 83 (153)
...+|++++|+|.+....-. ..+++..+... ++| ++++.||+|+.+ ..... +...+....+ ++++.
T Consensus 96 ~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 172 (394)
T PRK12736 96 AAQMDGAILVVAATDGPMPQ-TREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIR 172 (394)
T ss_pred HhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEE
Confidence 35679999999998632211 12223333333 677 678999999864 22211 2223344443 57999
Q ss_pred ecCCCCC--------CcHHHHHHHHHHHh
Q 031782 84 ISAKSNY--------NFEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~~~~--------~v~~lf~~l~~~i~ 104 (153)
+||++|. ++..+++.|...+.
T Consensus 173 vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 173 GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 9999984 46677777766654
No 257
>PRK12740 elongation factor G; Reviewed
Probab=97.83 E-value=0.00016 Score=61.87 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=38.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++++|+|.++.........|. .+... ++|+++|+||+|+..
T Consensus 75 ~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~--~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 75 GEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY--GVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc--CCCEEEEEECCCCCC
Confidence 34567889999999999999865555444443 33333 789999999999863
No 258
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=7.8e-05 Score=52.78 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=67.8
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HH--HHHHHc----
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QV--TFHRKK---- 77 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~--~~~~~~---- 77 (153)
-....+.||-.+|++++.+|+-+.+.|.....-++.+.... ...|+++.+||+|........+ .. .+....
T Consensus 77 Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~ 156 (193)
T KOG0077|consen 77 ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKG 156 (193)
T ss_pred HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccc
Confidence 34678899999999999999999999888776555444332 5899999999999875321111 11 111111
Q ss_pred -------C---CceEEecCCCCCCcHHHHHHHHHHH
Q 031782 78 -------N---LQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 78 -------~---~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+ +.++.||...+.+.-+.|.|+...+
T Consensus 157 ~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 157 KVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 1 2478889888888888888876543
No 259
>PRK12735 elongation factor Tu; Reviewed
Probab=97.74 E-value=0.0002 Score=57.64 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=53.2
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCCCc-ccC----hHHHHHHHHcC-----Cce
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNR-QVK----AKQVTFHRKKN-----LQY 81 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~~~-~v~----~~~~~~~~~~~-----~~~ 81 (153)
.-+..+|++++|+|.++...- ...+++..+... ++|.+ ++.||+|+.+. ... .+...+....+ +++
T Consensus 94 ~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~i 170 (396)
T PRK12735 94 TGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI 170 (396)
T ss_pred hhhccCCEEEEEEECCCCCch-hHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeE
Confidence 334578999999999874222 222333334333 67865 57999999642 111 12234444432 678
Q ss_pred EEecCCCCC----------CcHHHHHHHHHHH
Q 031782 82 YEISAKSNY----------NFEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~----------~v~~lf~~l~~~i 103 (153)
+.+||.+|. ++..+++.|...+
T Consensus 171 i~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 171 IRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred EecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 999999985 4556666665544
No 260
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.73 E-value=0.00023 Score=53.44 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=45.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 79 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~ 79 (153)
..+..+++.+|++++|+|.++.... ....|...+... ++|+++++||+|+..........++...++.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 4467789999999999999975433 233444444443 7899999999998753322223344445543
No 261
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.72 E-value=0.00019 Score=59.54 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=66.6
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc--ccChHHHHHHHHcCCc-eEEecCCCCCCc
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQ-YYEISAKSNYNF 92 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~--~v~~~~~~~~~~~~~~-~~e~Sa~~~~~v 92 (153)
..||++.++||.+++.||..+...+..-... ...|++.|++|+|+.+. .......+++.+++++ -..+|.++...
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 5799999999999999999887655544433 58999999999999762 2333347889999975 45666664333
Q ss_pred HHHHHHHHHHHhC
Q 031782 93 EKPFLYLARKLAG 105 (153)
Q Consensus 93 ~~lf~~l~~~i~~ 105 (153)
.++|..|+..+..
T Consensus 572 ~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 NELFIKLATMAQY 584 (625)
T ss_pred chHHHHHHHhhhC
Confidence 7999999988854
No 262
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.68 E-value=0.00012 Score=54.50 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
...+..+++.+|++++|+|+++..+.+....|. .... .++|+++|+||+|+.
T Consensus 87 ~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 87 SSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCCcc
Confidence 346778899999999999999865554433332 2222 268999999999985
No 263
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.66 E-value=0.00011 Score=57.43 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCCh----------hhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcc----------
Q 031782 8 VLIILICSIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ---------- 65 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~---------- 65 (153)
...+.+||.+++++|+|+|+++. ..+.+....+..+.... .+.|+++++||.|+..+.
T Consensus 175 R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~f 254 (317)
T cd00066 175 RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYF 254 (317)
T ss_pred chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccC
Confidence 45678899999999999999873 33333333334433321 579999999999964211
Q ss_pred -------cC-hHHHHH-----HHH-----cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 66 -------VK-AKQVTF-----HRK-----KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 66 -------v~-~~~~~~-----~~~-----~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.. .....+ ... ..+..+.++|.+-.++..+|..+...|.+
T Consensus 255 p~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 255 PDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 00 111111 111 12445778888888888888888887765
No 264
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.65 E-value=0.00025 Score=57.33 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=48.9
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc--cCh----HHHHHHHHcC---CceEE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA----KQVTFHRKKN---LQYYE 83 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~--v~~----~~~~~~~~~~---~~~~e 83 (153)
.-+..+|++++|+|.+....-+....|. .+... ...+++++.||+|+.+.. ... +...+.+..+ ++++.
T Consensus 99 ~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iip 176 (406)
T TIGR02034 99 TGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIP 176 (406)
T ss_pred HHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEE
Confidence 3567999999999997643222222222 12222 123588999999986411 111 1123334443 46999
Q ss_pred ecCCCCCCcHH
Q 031782 84 ISAKSNYNFEK 94 (153)
Q Consensus 84 ~Sa~~~~~v~~ 94 (153)
+||++|.|+++
T Consensus 177 iSA~~g~ni~~ 187 (406)
T TIGR02034 177 LSALKGDNVVS 187 (406)
T ss_pred eecccCCCCcc
Confidence 99999999885
No 265
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.64 E-value=0.00027 Score=57.99 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=64.9
Q ss_pred cEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHH----HHHHHcCCceEEecCCCCCC
Q 031782 19 QCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV----TFHRKKNLQYYEISAKSNYN 91 (153)
Q Consensus 19 d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~----~~~~~~~~~~~e~Sa~~~~~ 91 (153)
.+++++.|++.. .|...--.++..+.....+.|+|+|.||+|+.. ....++.+ .+...-+++++++|+.+.+|
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eeg 328 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEG 328 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhc
Confidence 568889999864 355554556677777767899999999999875 34444333 34445568999999999999
Q ss_pred cHHHHHHHHHHHhC
Q 031782 92 FEKPFLYLARKLAG 105 (153)
Q Consensus 92 v~~lf~~l~~~i~~ 105 (153)
|-++....+..++.
T Consensus 329 Vm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 329 VMDVRTTACEALLA 342 (620)
T ss_pred eeeHHHHHHHHHHH
Confidence 99988888777764
No 266
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.63 E-value=0.00037 Score=53.27 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=43.8
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.+..+++.+|++|+|+|.++.... ....++...... ++|+++++||+|+..........++...++.+.+
T Consensus 87 ~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~ 156 (267)
T cd04169 87 DTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRLR--GIPIITFINKLDREGRDPLELLDEIEEELGIDCT 156 (267)
T ss_pred HHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHhc--CCCEEEEEECCccCCCCHHHHHHHHHHHHCCCce
Confidence 356788999999999999874321 122333333332 7899999999998654322223345555555433
No 267
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.62 E-value=0.00044 Score=55.68 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=44.2
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCCCc-ccC----hHHHHHHHHcC-----CceEEe
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNR-QVK----AKQVTFHRKKN-----LQYYEI 84 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~~~-~v~----~~~~~~~~~~~-----~~~~e~ 84 (153)
.++|++++|+|.+....... .+.+..+... ++|.+ ++.||+|+.+. ... .+...+....+ ++++.+
T Consensus 97 ~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~v 173 (394)
T TIGR00485 97 AQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRG 173 (394)
T ss_pred hhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEEC
Confidence 45699999999987322221 1222333333 67755 68999998742 211 12334455544 689999
Q ss_pred cCCCCC
Q 031782 85 SAKSNY 90 (153)
Q Consensus 85 Sa~~~~ 90 (153)
||.+|.
T Consensus 174 Sa~~g~ 179 (394)
T TIGR00485 174 SALKAL 179 (394)
T ss_pred cccccc
Confidence 999885
No 268
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.61 E-value=0.00016 Score=57.16 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=63.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCCh----------hhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCccc---------
Q 031782 8 VLIILICSIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV--------- 66 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v--------- 66 (153)
..++.+||.+++++|||+|+++. ..+.+....+..+.+.. .+.|+++++||.|+..+.+
T Consensus 198 R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~f 277 (342)
T smart00275 198 RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYF 277 (342)
T ss_pred hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccC
Confidence 46778999999999999999963 23444444444444332 5799999999999742110
Q ss_pred -------C-hHHH-----HHHHHc------CCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 67 -------K-AKQV-----TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 67 -------~-~~~~-----~~~~~~------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
. .... .|.... .+..+.|||.+-.++..+|..+...|.+
T Consensus 278 p~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 278 PDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 0 0111 121111 2445778888888888888888777764
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.60 E-value=0.0002 Score=48.53 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=56.1
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC-CceEEecCCCCCCcHH
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEK 94 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~ 94 (153)
.++|++++|...++++|--. ..+... -..|+|-|.+|.||.+..-......|..+-| -++|++|+.++.||++
T Consensus 63 ~dadvi~~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 63 QDADVIIYVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred hccceeeeeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHH
Confidence 37888888888888754211 112211 1456999999999985222222445666666 5799999999999999
Q ss_pred HHHHHHHH
Q 031782 95 PFLYLARK 102 (153)
Q Consensus 95 lf~~l~~~ 102 (153)
++..|...
T Consensus 137 l~~~L~~~ 144 (148)
T COG4917 137 LVDYLASL 144 (148)
T ss_pred HHHHHHhh
Confidence 99988753
No 270
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.58 E-value=0.00032 Score=57.81 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=47.8
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc--cChH----HHHHHHHc----CCceEEe
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAK----QVTFHRKK----NLQYYEI 84 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~--v~~~----~~~~~~~~----~~~~~e~ 84 (153)
+..+|++++|+|.+....-.....|. .+... .-.+++++.||+|+.+.. ...+ ...+.... ..+++.+
T Consensus 128 l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipv 205 (474)
T PRK05124 128 ASTCDLAILLIDARKGVLDQTRRHSF-IATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPL 205 (474)
T ss_pred HhhCCEEEEEEECCCCccccchHHHH-HHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 58999999999997642211122221 11111 124788999999986411 1111 11223333 3679999
Q ss_pred cCCCCCCcHHH
Q 031782 85 SAKSNYNFEKP 95 (153)
Q Consensus 85 Sa~~~~~v~~l 95 (153)
||++|.|+.++
T Consensus 206 SA~~g~ni~~~ 216 (474)
T PRK05124 206 SALEGDNVVSQ 216 (474)
T ss_pred EeecCCCcccc
Confidence 99999999864
No 271
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.54 E-value=0.00076 Score=50.57 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=63.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChh---hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc----cCh----HHHHHHHHcC
Q 031782 10 IILICSIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ----VKA----KQVTFHRKKN 78 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~----v~~----~~~~~~~~~~ 78 (153)
-....++++.++|+|+|+...+ .+..+...+..+.+.++++.+.+...|.|+.... +.. ...+.+...+
T Consensus 69 ~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 69 QREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp CHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4567889999999999998443 3333344556666667899999999999986411 111 1223344555
Q ss_pred ---CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 79 ---LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 79 ---~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+.++.||.-+ +.+-+++..++..+..
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 7799999987 5888888888888754
No 272
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.50 E-value=0.00077 Score=53.13 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=53.4
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHH----------cCCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----------KNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~----------~~~~~~ 82 (153)
....||.+++|.+....+....+ ...+.+ +.-++|.||+|+........ ...+... +..+++
T Consensus 166 i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E----~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi 238 (332)
T PRK09435 166 VAGMVDFFLLLQLPGAGDELQGI---KKGIME----LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVL 238 (332)
T ss_pred HHHhCCEEEEEecCCchHHHHHH---Hhhhhh----hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEE
Confidence 45679999999764433333222 222222 23489999999875321111 1111111 225799
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+||+++.|+++++..|.+.+..
T Consensus 239 ~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 239 TCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 273
>CHL00071 tufA elongation factor Tu
Probab=97.45 E-value=0.00098 Score=53.95 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=48.3
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcc-cC----hHHHHHHHHcC-----Cc
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-VK----AKQVTFHRKKN-----LQ 80 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~-v~----~~~~~~~~~~~-----~~ 80 (153)
...+..+|++++|+|.+.... ....+.+..+... ++| ++++.||+|+.+.. .. .+...+.+..+ ++
T Consensus 93 ~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 169 (409)
T CHL00071 93 ITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIP 169 (409)
T ss_pred HHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcce
Confidence 344568999999999986422 2222233334333 678 77899999997522 11 12223334333 67
Q ss_pred eEEecCCCCCCc
Q 031782 81 YYEISAKSNYNF 92 (153)
Q Consensus 81 ~~e~Sa~~~~~v 92 (153)
++.+||.+|.|+
T Consensus 170 ii~~Sa~~g~n~ 181 (409)
T CHL00071 170 IVSGSALLALEA 181 (409)
T ss_pred EEEcchhhcccc
Confidence 999999999753
No 274
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.42 E-value=0.00085 Score=52.37 Aligned_cols=87 Identities=14% Similarity=0.222 Sum_probs=61.9
Q ss_pred CcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCCcHH
Q 031782 18 GQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 18 ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
+++++|+||.+.. -+.+.-..++.++..... .|+++|.||.|+.+.+--.+ ...+....+.....+++..+.+++.
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDK 326 (346)
T ss_pred cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHH
Confidence 5789999999864 355555567778877764 89999999999875322222 2334444445578889999999998
Q ss_pred HHHHHHHHHhC
Q 031782 95 PFLYLARKLAG 105 (153)
Q Consensus 95 lf~~l~~~i~~ 105 (153)
+...+.....+
T Consensus 327 ~~~~v~~~a~~ 337 (346)
T COG1084 327 LREEVRKTALE 337 (346)
T ss_pred HHHHHHHHhhc
Confidence 88887776533
No 275
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.42 E-value=0.0012 Score=50.26 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=58.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE--EecC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY--EISA 86 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~--e~Sa 86 (153)
..+..+++.+|++++|+|.++.........|. .+... ++|.++++||+|+...........+...++.+++ .+..
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~ 155 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPI 155 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 34667889999999999999865444333342 23333 7899999999998754322223455555665544 4556
Q ss_pred CCCCCcHHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARKL 103 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i 103 (153)
.++.++..+...+....
T Consensus 156 ~~~~~~~~~vd~~~~~~ 172 (268)
T cd04170 156 GEGDDFKGVVDLLTEKA 172 (268)
T ss_pred cCCCceeEEEEcccCEE
Confidence 77777665555554433
No 276
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.40 E-value=0.00082 Score=57.30 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=48.3
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC--cccCh----HHHHHHHHcC---CceEEe
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKA----KQVTFHRKKN---LQYYEI 84 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~--~~v~~----~~~~~~~~~~---~~~~e~ 84 (153)
....+|++++|+|.+....-+....+. .+... ...+++++.||+|+.+ ..... +...+....+ .+++.+
T Consensus 124 ~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipi 201 (632)
T PRK05506 124 GASTADLAIILVDARKGVLTQTRRHSF-IASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPI 201 (632)
T ss_pred HHHhCCEEEEEEECCCCccccCHHHHH-HHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEE
Confidence 467899999999997643222222221 22222 1357889999999863 11111 1123334444 458999
Q ss_pred cCCCCCCcHH
Q 031782 85 SAKSNYNFEK 94 (153)
Q Consensus 85 Sa~~~~~v~~ 94 (153)
||++|.|+.+
T Consensus 202 SA~~g~ni~~ 211 (632)
T PRK05506 202 SALKGDNVVT 211 (632)
T ss_pred ecccCCCccc
Confidence 9999999874
No 277
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.38 E-value=0.0017 Score=50.99 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHc-CCceEEecCCCCCCcHHHHH-HHHHHHhCCCCCC
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLH 110 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~-~l~~~i~~~~~~~ 110 (153)
.+|+++|+||+|+..... ....+.... ...++.+||+.+.+++++.+ .+...++......
T Consensus 214 ~KPvI~VlNK~Dl~~~~~--~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 214 SKPMVIAANKADIPDAEN--NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred CCcEEEEEEHHHccChHH--HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 469999999999753211 111222233 45789999999999999998 6999997765444
No 278
>PRK12739 elongation factor G; Reviewed
Probab=97.29 E-value=0.0024 Score=55.02 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=35.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
.+..+++.+|++|+|+|.++...-.....| ..+... ++|.+++.||+|+..
T Consensus 89 e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 89 EVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCCCCC
Confidence 467788999999999999875333222222 233333 789999999999863
No 279
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.27 E-value=0.001 Score=51.61 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=51.8
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-H-------HHHHH---HcCCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q-------VTFHR---KKNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~-------~~~~~---~~~~~~~ 82 (153)
....+|.++++-+. .+.+++..+...+. ++|.++|.||+|+........ . ..+.. .++.+++
T Consensus 144 i~~~aD~i~vv~~~---~~~~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~ 216 (300)
T TIGR00750 144 IANMADTFVVVTIP---GTGDDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVL 216 (300)
T ss_pred HHHhhceEEEEecC---CccHHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEE
Confidence 34556777777433 23344444433332 577899999999874221110 0 01111 1224689
Q ss_pred EecCCCCCCcHHHHHHHHHHHh
Q 031782 83 EISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.+||+++.|+++++.++.....
T Consensus 217 ~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 217 TTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEEccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 280
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.26 E-value=0.0017 Score=47.16 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=56.2
Q ss_pred hhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC--cc---c--------ChHHH-HH---HHH
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--RQ---V--------KAKQV-TF---HRK 76 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~--~~---v--------~~~~~-~~---~~~ 76 (153)
+.++|++++|.+- +|...+ .|+..+... +.|+++|+||+|+.. .. . ..+.. .. ...
T Consensus 78 ~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 78 FSEYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred ccCcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 6678999988432 344444 456666655 689999999999853 11 0 00111 11 122
Q ss_pred cC---CceEEecCC--CCCCcHHHHHHHHHHHhCC
Q 031782 77 KN---LQYYEISAK--SNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 77 ~~---~~~~e~Sa~--~~~~v~~lf~~l~~~i~~~ 106 (153)
.+ -++|-+|+. .+.+...+.+.+...++..
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 22 358999998 6789999999999998754
No 281
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.26 E-value=0.00074 Score=56.01 Aligned_cols=96 Identities=18% Similarity=0.336 Sum_probs=73.1
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC---cccC-hHHHHHHHH-cCCceEE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVK-AKQVTFHRK-KNLQYYE 83 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~---~~v~-~~~~~~~~~-~~~~~~e 83 (153)
...|..++|++||||.+.+..+|+.+..+...+..+. ..+|+++++++.-... +.+. .+...++.. ..+.+|+
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 4568889999999999999999999988877766442 5789999998854432 2222 234444444 4588999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++.+|.+++.+|..+...+...
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998877643
No 282
>PRK00049 elongation factor Tu; Reviewed
Probab=97.24 E-value=0.0025 Score=51.44 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=52.5
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCCCc-ccC----hHHHHHHHHc-----CCce
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNR-QVK----AKQVTFHRKK-----NLQY 81 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~~~-~v~----~~~~~~~~~~-----~~~~ 81 (153)
..+..+|++++|+|.+.... .....++..+... ++|.+ ++.||+|+.+. ... .+...+.... ++++
T Consensus 94 ~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~i 170 (396)
T PRK00049 94 TGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPI 170 (396)
T ss_pred hhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcE
Confidence 44578999999999986422 2222333344433 68876 58999998642 111 1122333332 3678
Q ss_pred EEecCCCCCC----------cHHHHHHHHHHH
Q 031782 82 YEISAKSNYN----------FEKPFLYLARKL 103 (153)
Q Consensus 82 ~e~Sa~~~~~----------v~~lf~~l~~~i 103 (153)
+.+||+++.+ +..+++.|...+
T Consensus 171 v~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 171 IRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 9999998753 445555555443
No 283
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.19 E-value=0.0029 Score=48.44 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=47.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC----ceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~----~~~e~ 84 (153)
.....+++.+|++|+|+|.++...-.. ...+..+... ++|++++.||+|+.+.........+...++. ..+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pi 155 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPI 155 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecc
Confidence 345778999999999999987432211 2233334333 7899999999998642221112333333332 25677
Q ss_pred cCCCC
Q 031782 85 SAKSN 89 (153)
Q Consensus 85 Sa~~~ 89 (153)
|+..+
T Consensus 156 sa~~~ 160 (270)
T cd01886 156 GEEDD 160 (270)
T ss_pred ccCCC
Confidence 77644
No 284
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.12 E-value=0.0024 Score=46.16 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=35.8
Q ss_pred hhhcCcEEEEEEeCCC-hhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC
Q 031782 14 CSIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN 63 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~-~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~ 63 (153)
|..++.++|||+|.+. ...+.+..+++..+.... ..+|++++.||.|+..
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 6889999999999974 446666666665554432 4799999999999864
No 285
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.09 E-value=0.0028 Score=51.46 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=60.6
Q ss_pred hHhhhh-cCcEEEEEE-eCC----Chhh-HhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceE
Q 031782 11 ILICSI-HGQCAIIMF-DVT----ARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 11 ~~~~~~-~ad~~ilv~-d~~----~~~s-~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~ 82 (153)
++..+. .+++.|+|. |.+ .++. .....+|+.+++.. ++|+++|.||+|-.... ..+ ...+...++++++
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl 213 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVL 213 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceE
Confidence 888888 999999998 664 1122 33345788888887 89999999999933221 222 3356677788877
Q ss_pred EecCC--CCCCcHHHHHHHHHHHh
Q 031782 83 EISAK--SNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~--~~~~v~~lf~~l~~~i~ 104 (153)
.+|+. +.+.+..+++.+....+
T Consensus 214 ~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 214 AMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred EEEHHHcCHHHHHHHHHHHHhcCC
Confidence 77765 34445566665555543
No 286
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.08 E-value=0.0029 Score=54.49 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=48.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc----eEEec
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ----YYEIS 85 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~----~~e~S 85 (153)
.+..+++.+|++|+|+|.++.........| ..+... ++|+++|+||+|+...........+...++.. .+.+|
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccc
Confidence 467889999999999999875444433333 333333 78999999999987533222233444444421 34555
Q ss_pred CCCC
Q 031782 86 AKSN 89 (153)
Q Consensus 86 a~~~ 89 (153)
+..+
T Consensus 168 ~~~~ 171 (689)
T TIGR00484 168 AEDN 171 (689)
T ss_pred cCCC
Confidence 5544
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.06 E-value=0.0051 Score=48.17 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=38.3
Q ss_pred CcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 50 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 50 ~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+|.+.|.||+|+... .....+.+.. .++.+||+++.|++++.+.|-+.+-
T Consensus 240 ~p~l~v~NKiD~~~~---e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 240 KPALYVVNKIDLPGL---EELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeEEEEecccccCH---HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 399999999998641 1122333333 7899999999999999999998884
No 288
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.02 E-value=0.01 Score=43.41 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=57.8
Q ss_pred hhHhhhhc---CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChHHHHHHHHcC----Cc-
Q 031782 10 IILICSIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKN----LQ- 80 (153)
Q Consensus 10 ~~~~~~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~~~~----~~- 80 (153)
+...|+++ -.++++++|..-...-.+. +.++-+... ++|+++++||+|..... ........++..+ ..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 44566664 4678888888654222111 233334433 89999999999987532 2221223333322 22
Q ss_pred -eEEecCCCCCCcHHHHHHHHHHHh
Q 031782 81 -YYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 81 -~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++..|+.++.|++++...|...+.
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhh
Confidence 778899999999999999887764
No 289
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.02 E-value=0.0048 Score=48.51 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=45.2
Q ss_pred CCcEEEEeeCCCCCC-----ccc--------ChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 49 NIPIVLCGNKVDVKN-----RQV--------KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~-----~~v--------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|+++|.+|||... .+. ......||-.+|...+.+|+|...|++-+...|+..+..
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 469999999999732 111 112447788889999999999999999999999988864
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0023 Score=50.08 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=57.0
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH----HHHHHHHc---CCceEEecCCCCC
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKK---NLQYYEISAKSNY 90 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~----~~~~~~~~---~~~~~e~Sa~~~~ 90 (153)
-|++++|+..+.+=.--+-.+-+-.+. ...-..++++.||+||..++-..+ ..+|.+-. +.+++.+||..+.
T Consensus 110 MDgAlLvIaANEpcPQPQT~EHl~Ale-Iigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~ 188 (415)
T COG5257 110 MDGALLVIAANEPCPQPQTREHLMALE-IIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKA 188 (415)
T ss_pred hcceEEEEecCCCCCCCchHHHHHHHh-hhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhcc
Confidence 389999999986422112221111111 112357899999999976432222 22343322 4689999999999
Q ss_pred CcHHHHHHHHHHHhCC
Q 031782 91 NFEKPFLYLARKLAGD 106 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~~ 106 (153)
|++.+++.|.+.|+..
T Consensus 189 NIDal~e~i~~~IptP 204 (415)
T COG5257 189 NIDALIEAIEKYIPTP 204 (415)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999999754
No 291
>PLN03127 Elongation factor Tu; Provisional
Probab=97.00 E-value=0.0067 Score=49.75 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=50.1
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCc-ccCh----HHHHHHHHc-----CCceEE
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QVKA----KQVTFHRKK-----NLQYYE 83 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~-~v~~----~~~~~~~~~-----~~~~~e 83 (153)
...+|++++|+|.++...- ...+.+..+... ++| ++++.||+|+.+. .... +...+.... .++++.
T Consensus 145 ~~~aD~allVVda~~g~~~-qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip 221 (447)
T PLN03127 145 AAQMDGGILVVSAPDGPMP-QTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIR 221 (447)
T ss_pred HhhCCEEEEEEECCCCCch-hHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEE
Confidence 3469999999999764221 122223333333 688 5788999999742 1111 111233322 367888
Q ss_pred ecCC---CCCC-------cHHHHHHHHHHHh
Q 031782 84 ISAK---SNYN-------FEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~---~~~~-------v~~lf~~l~~~i~ 104 (153)
+||. +|.| +..+++.|...+.
T Consensus 222 ~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 222 GSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred eccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 8876 4544 5566666666553
No 292
>PLN03126 Elongation factor Tu; Provisional
Probab=96.99 E-value=0.0033 Score=51.98 Aligned_cols=76 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCc-ccCh----HHHHHHHHc-----CCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QVKA----KQVTFHRKK-----NLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~-~v~~----~~~~~~~~~-----~~~~~ 82 (153)
-+..+|++++|+|.++...- ...+++..+... ++| ++++.||+|+.+. .... +...+.+.. +++++
T Consensus 164 g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~v 240 (478)
T PLN03126 164 GAAQMDGAILVVSGADGPMP-QTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPII 240 (478)
T ss_pred HHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEE
Confidence 34578999999999864322 223334444443 677 7789999998652 1111 222334433 46799
Q ss_pred EecCCCCCCc
Q 031782 83 EISAKSNYNF 92 (153)
Q Consensus 83 e~Sa~~~~~v 92 (153)
.+||.+|.++
T Consensus 241 p~Sa~~g~n~ 250 (478)
T PLN03126 241 SGSALLALEA 250 (478)
T ss_pred EEEccccccc
Confidence 9999988653
No 293
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.98 E-value=0.0045 Score=50.76 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=47.4
Q ss_pred hhhhcCcEEEEEEeCCChh---hH---hhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC----cc----cChHHHHHHHHc
Q 031782 13 ICSIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN----RQ----VKAKQVTFHRKK 77 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~----~~----v~~~~~~~~~~~ 77 (153)
.....+|++++|+|.+... .| ....+-+..+... ++| ++++.||.|... +. +..+...+....
T Consensus 104 ~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~ 181 (446)
T PTZ00141 104 TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV 181 (446)
T ss_pred HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc
Confidence 3356899999999998632 11 1222222233333 666 678999999532 11 111222333333
Q ss_pred -----CCceEEecCCCCCCcHH
Q 031782 78 -----NLQYYEISAKSNYNFEK 94 (153)
Q Consensus 78 -----~~~~~e~Sa~~~~~v~~ 94 (153)
+++++.+|+.+|+|+.+
T Consensus 182 g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 182 GYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCcccceEEEeecccCCCccc
Confidence 35789999999999864
No 294
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.011 Score=43.63 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=56.2
Q ss_pred Hhhhh---cCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCCcccC----h----HHHH---
Q 031782 12 LICSI---HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVK----A----KQVT--- 72 (153)
Q Consensus 12 ~~~~~---~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~~~v~----~----~~~~--- 72 (153)
..|+. .+-++|||+|..-. ....+..+++-.+.-.+ ..+|++++.||.|+...... . +...
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~ 179 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRE 179 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 34555 79999999998642 34555555554443332 47899999999998531110 0 0000
Q ss_pred ---------------------------H--HHHcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 73 ---------------------------F--HRKKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 73 ---------------------------~--~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
| +....+.|.++|++++ +++++.+|+.+.
T Consensus 180 sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 180 SRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 0112345888898888 888888888764
No 295
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.93 E-value=0.0036 Score=52.38 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=36.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.++.. ......++..... .++|+++++||+|+..
T Consensus 95 ~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 95 EDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 34566889999999999998741 1122333333333 3789999999999864
No 296
>PRK00007 elongation factor G; Reviewed
Probab=96.84 E-value=0.012 Score=50.74 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=34.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
....+..+|++|+|+|.+.....+....|. .+... ++|.+++.||+|+.
T Consensus 92 v~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~ 140 (693)
T PRK00007 92 VERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence 455678899999999987654433333333 33333 78999999999985
No 297
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.84 E-value=0.0024 Score=46.47 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=51.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh-hc-CCCcEEEEeeCCCCCCc-ccChH-HHHHHHHcC--CceEEecC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKN--LQYYEISA 86 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~-~~-~~~p~vlv~nK~Dl~~~-~v~~~-~~~~~~~~~--~~~~e~Sa 86 (153)
+|.-+.+.-|+|+|++..+.. .+. .. --.-=++|.||.||... ....+ ..+-+++.+ .+++++|+
T Consensus 113 sp~L~d~~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ 183 (202)
T COG0378 113 SPDLGDHLRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNL 183 (202)
T ss_pred CcchhhceEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeC
Confidence 333444588888888864311 111 10 00135789999999752 22222 333344443 78999999
Q ss_pred CCCCCcHHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARKL 103 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i 103 (153)
++|+|+++++.++....
T Consensus 184 ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 184 KTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCcCHHHHHHHHHhhc
Confidence 99999999999987654
No 298
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.83 E-value=0.018 Score=44.42 Aligned_cols=86 Identities=14% Similarity=0.255 Sum_probs=53.6
Q ss_pred CcEEEEEEeCC---ChhhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCCCcccChH-HH-------HHH-----------
Q 031782 18 GQCAIIMFDVT---ARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV-------TFH----------- 74 (153)
Q Consensus 18 ad~~ilv~d~~---~~~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~-------~~~----------- 74 (153)
--++++|.|.. ++-+|-.-.-|. ..+.+ ...|+++|.||+|+.+.....+ .. .+.
T Consensus 148 ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 148 PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 34666677764 344554332222 22322 3899999999999975332111 00 000
Q ss_pred --------HH-cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 75 --------RK-KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 75 --------~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.. .++..+.||+.+|.|.+++|..+...+.+
T Consensus 226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 11 24678999999999999999999887754
No 299
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.82 E-value=0.0027 Score=49.85 Aligned_cols=83 Identities=22% Similarity=0.218 Sum_probs=58.5
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~ 88 (153)
....++..+|+++.|.|.-++.+... ..+.+...+.+.++|+||+||....+... ...+.+..+...+.++++.
T Consensus 27 ~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~ 101 (322)
T COG1161 27 QLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKS 101 (322)
T ss_pred HHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeec
Confidence 34567778999999999998865432 22333333567799999999987555433 3445555577788999998
Q ss_pred CCCcHHHHH
Q 031782 89 NYNFEKPFL 97 (153)
Q Consensus 89 ~~~v~~lf~ 97 (153)
+.++..+..
T Consensus 102 ~~~~~~i~~ 110 (322)
T COG1161 102 RQGGKKIRK 110 (322)
T ss_pred ccCccchHH
Confidence 888777774
No 300
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.77 E-value=0.0044 Score=44.31 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=28.4
Q ss_pred cEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 19 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 19 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
|++++|.|..++.+... ..+.+.+.-...+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999987643221 223333211113689999999999964
No 301
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0063 Score=49.95 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=61.9
Q ss_pred hHhhhhcCcEEEEEEeC--CChhhHhhHHHHHHHHHhhc-------CCCcEEEEeeCCCCCCc--ccChHHHHHHHHcC-
Q 031782 11 ILICSIHGQCAIIMFDV--TARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKN- 78 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~--~~~~s~~~~~~~~~~i~~~~-------~~~p~vlv~nK~Dl~~~--~v~~~~~~~~~~~~- 78 (153)
.+.-++.||++++|+|. ++.++-..+.+.+.....-+ ...+++++.||.|+... +.......+....+
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR 421 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence 34557789999999999 44444333333333332221 25799999999998753 22221122222222
Q ss_pred --Cc-eEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 79 --LQ-YYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 79 --~~-~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.+ ..++|+++++|++.+...+...+...-
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 22 457999999999999999998886643
No 302
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.62 E-value=0.0048 Score=50.88 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=48.4
Q ss_pred hhhcCcEEEEEEeCCChhhHh--hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.+..+|++|.++|.-|+--|. ++..|+.+.. .....+++.||.||.....-.....+...++++++.-||..
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 356899999999999975444 2334444433 34778999999999742221222345566679998888886
No 303
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.54 E-value=0.0044 Score=47.96 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCcEEEEeeCCCCCCccc-C-hHHHHHHHHc--CCceEEecCCCCCCcHHHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQV-K-AKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v-~-~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
...-++|.||+|+....- . .......+.. ..+++.+||++|+|++++..||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999964211 1 1122223332 4789999999999999999999764
No 304
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.02 Score=46.40 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=54.0
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChHHHHHHHHc---CCceEEecCCCCCCc
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKK---NLQYYEISAKSNYNF 92 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~~~---~~~~~e~Sa~~~~~v 92 (153)
..|.+++|++.++.-.-+..+. +..+. ...-...++|.||+|..+.. +.....++.... +.+++.+|+++|+||
T Consensus 73 ~~d~alLvV~~deGl~~qtgEh-L~iLd-llgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI 150 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEH-LLILD-LLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGI 150 (447)
T ss_pred CCceEEEEEeCccCcchhhHHH-HHHHH-hcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCH
Confidence 6799999999975322222222 11222 22234568999999987532 111122222222 356899999999999
Q ss_pred HHHHHHHHHHH
Q 031782 93 EKPFLYLARKL 103 (153)
Q Consensus 93 ~~lf~~l~~~i 103 (153)
+++.+.|....
T Consensus 151 ~~Lk~~l~~L~ 161 (447)
T COG3276 151 EELKNELIDLL 161 (447)
T ss_pred HHHHHHHHHhh
Confidence 99999999877
No 305
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.025 Score=45.00 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=47.6
Q ss_pred cCcEEEEEEeCCChhhHhhHH--HHHHHHHhhcCCCcEEEEeeCCCCCC--cccChH----HHHHHHHcCC---ceEEec
Q 031782 17 HGQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAK----QVTFHRKKNL---QYYEIS 85 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~p~vlv~nK~Dl~~--~~v~~~----~~~~~~~~~~---~~~e~S 85 (153)
.||++|+++|.-.. -.++-. .++..+.. =..+++..||.||.+ +.+..+ -..|+...++ .++.+|
T Consensus 109 TadlAIlLVDAR~G-vl~QTrRHs~I~sLLG---IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiS 184 (431)
T COG2895 109 TADLAILLVDARKG-VLEQTRRHSFIASLLG---IRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPIS 184 (431)
T ss_pred cccEEEEEEecchh-hHHHhHHHHHHHHHhC---CcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEech
Confidence 47999999998532 111111 13333332 246788899999986 333332 3367888874 589999
Q ss_pred CCCCCCcH
Q 031782 86 AKSNYNFE 93 (153)
Q Consensus 86 a~~~~~v~ 93 (153)
|..|+||.
T Consensus 185 Al~GDNV~ 192 (431)
T COG2895 185 ALLGDNVV 192 (431)
T ss_pred hccCCccc
Confidence 99999975
No 306
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.09 E-value=0.039 Score=45.60 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=44.2
Q ss_pred CCcEEEEeeCCCCCC---cc--cC-------hH-HHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 49 NIPIVLCGNKVDVKN---RQ--VK-------AK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~---~~--v~-------~~-~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|++||.+|+|... +. .. .+ .+.+|-.+|...+.||++...|++-++..|...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 369999999999642 11 11 11 346788889999999999999999999998888865
No 307
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.07 E-value=0.04 Score=45.34 Aligned_cols=90 Identities=9% Similarity=0.108 Sum_probs=60.6
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---cChHHHHHH-------HHcCCceEE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFH-------RKKNLQYYE 83 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---v~~~~~~~~-------~~~~~~~~e 83 (153)
.+.-.|++++++|..+. ..-+-...+++.... +.+.|+|.||+|..... +-.+...+. ..++.+++.
T Consensus 88 vl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~--gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivY 164 (603)
T COG1217 88 VLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL--GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVY 164 (603)
T ss_pred hhhhcceEEEEEEcccC-CCCchhhhHHHHHHc--CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEE
Confidence 35578999999999863 233333344555444 77888899999987632 223333332 334568899
Q ss_pred ecCCCC----------CCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSN----------YNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~----------~~v~~lf~~l~~~i~~~ 106 (153)
.|+..| .+...+|+.|++.++.-
T Consensus 165 AS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 165 ASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred eeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 998866 46888999999888654
No 308
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.025 Score=45.65 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=47.6
Q ss_pred cCcEEEEEEeCCChh---hHhhHH--HHHHHHHhhcCCCcEEEEeeCCCCCC-c-----ccChHHHHHHHHcC-----Cc
Q 031782 17 HGQCAIIMFDVTARL---TYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN-R-----QVKAKQVTFHRKKN-----LQ 80 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~---s~~~~~--~~~~~i~~~~~~~p~vlv~nK~Dl~~-~-----~v~~~~~~~~~~~~-----~~ 80 (153)
.||++|||+|..+.+ .|..-. .-...+.....=..++++.||.|+.+ + ++..+...+.+..| ++
T Consensus 108 qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~ 187 (428)
T COG5256 108 QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVP 187 (428)
T ss_pred hccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCe
Confidence 689999999998753 221111 11111222222345888899999875 1 11222223455554 46
Q ss_pred eEEecCCCCCCcHHHH
Q 031782 81 YYEISAKSNYNFEKPF 96 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf 96 (153)
|+.||+..|.|+.+.-
T Consensus 188 FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 188 FIPISGFKGDNLTKKS 203 (428)
T ss_pred EEecccccCCcccccC
Confidence 9999999999976543
No 309
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.90 E-value=0.028 Score=42.33 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=43.4
Q ss_pred cCcEEEEEEeCCChhh-HhhHHHHHHHHHhh-cCCCcEEEEeeCCCCCCcccCh--------------------H-HHHH
Q 031782 17 HGQCAIIMFDVTARLT-YKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKA--------------------K-QVTF 73 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s-~~~~~~~~~~i~~~-~~~~p~vlv~nK~Dl~~~~v~~--------------------~-~~~~ 73 (153)
..-++++++|..-..+ ..-+..++-.+... .-+.|.|.|.||+|+.+..... . ..++
T Consensus 122 ~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i 201 (238)
T PF03029_consen 122 GRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI 201 (238)
T ss_dssp ---EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred cceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4568888998863221 11122222221111 1279999999999997521000 0 0111
Q ss_pred HH---HcC-C-ceEEecCCCCCCcHHHHHHHHHHH
Q 031782 74 HR---KKN-L-QYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 74 ~~---~~~-~-~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+. .++ . +++.+|+++++|+++++..+-+.+
T Consensus 202 ~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 202 AELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21 223 3 799999999999999998886654
No 310
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=95.90 E-value=0.024 Score=43.60 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=42.7
Q ss_pred hhhhc--CcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-cc---ChHHHHHHHHcCCceEEec
Q 031782 13 ICSIH--GQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-QV---KAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 13 ~~~~~--ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v---~~~~~~~~~~~~~~~~e~S 85 (153)
.++.+ +|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+... +. .....+.+..+++++|...
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~ 183 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFP 183 (276)
T ss_pred ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCC
Confidence 44553 6777777776642 22222 22233333 36899999999998641 11 1224466788889888776
Q ss_pred CC
Q 031782 86 AK 87 (153)
Q Consensus 86 a~ 87 (153)
..
T Consensus 184 ~~ 185 (276)
T cd01850 184 ED 185 (276)
T ss_pred CC
Confidence 53
No 311
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.85 E-value=0.06 Score=40.00 Aligned_cols=76 Identities=8% Similarity=0.096 Sum_probs=44.3
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcE-EEEeeCCCCCCcc--cC---hHHH-HHHHHc--CCceEE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ--VK---AKQV-TFHRKK--NLQYYE 83 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~-vlv~nK~Dl~~~~--v~---~~~~-~~~~~~--~~~~~e 83 (153)
...+.+|++++|+|.+....... ..++..+... +.|. ++|.||+|+.+.. .. .... .+..+. +.+++.
T Consensus 99 ~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~ 175 (225)
T cd01882 99 DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFY 175 (225)
T ss_pred HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 34678999999999975432221 1223333333 5675 4599999986321 11 1111 122222 368999
Q ss_pred ecCCCCCC
Q 031782 84 ISAKSNYN 91 (153)
Q Consensus 84 ~Sa~~~~~ 91 (153)
+||+++..
T Consensus 176 iSa~~~~~ 183 (225)
T cd01882 176 LSGIVHGR 183 (225)
T ss_pred EeeccCCC
Confidence 99998854
No 312
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.81 E-value=0.13 Score=37.10 Aligned_cols=90 Identities=6% Similarity=-0.044 Sum_probs=54.9
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC---CCcEEEEeeCCCCCCcc-c-------ChHHHHHHHHcCCceEE
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ-V-------KAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~p~vlv~nK~Dl~~~~-v-------~~~~~~~~~~~~~~~~e 83 (153)
..+.|++++|++.++. +-. ....++.+..... -.++++|.|+.|..... . ......+.+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~~-t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 4678999999999862 211 1222333333321 25788999999965421 1 12233455555555544
Q ss_pred ec-----CCCCCCcHHHHHHHHHHHhCC
Q 031782 84 IS-----AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~S-----a~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+ +..+.++.+++..+...+..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 43 456778999999999888763
No 313
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.65 E-value=0.039 Score=43.81 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=62.9
Q ss_pred hhhhhhHhhhhcCcEEEEEEeCCChh--hHhh-----H---HHHHHHHHhhc--CCCcEEEEeeCCCCCCcc--------
Q 031782 6 FNVLIILICSIHGQCAIIMFDVTARL--TYKN-----V---PTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-------- 65 (153)
Q Consensus 6 ~~~~~~~~~~~~ad~~ilv~d~~~~~--s~~~-----~---~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~-------- 65 (153)
.....+-+++.+++++||+.++++-+ .+++ + ..+++.+-+.. .+.+++|+.||.||-++.
T Consensus 207 seRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~ 286 (354)
T KOG0082|consen 207 SERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTD 286 (354)
T ss_pred HHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhh
Confidence 34456778999999999999998532 1111 1 12233333321 578999999999984311
Q ss_pred -------cC-h-HHH-----HHH---HHc--CCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 66 -------VK-A-KQV-----TFH---RKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 66 -------v~-~-~~~-----~~~---~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.. . ++. .|. ... .+.+..++|.+-.+|..+|..+...|..
T Consensus 287 ~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 287 CFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred hCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 11 1 111 111 111 2456788899999999999999888865
No 314
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.60 E-value=0.043 Score=43.25 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=57.0
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCc----EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p----~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
.-...+|.++.|.|++.|+--.+....+.-+...- ++.| ++=|-||+|.....+.. ..++ .+.+||+
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------E~n~--~v~isal 324 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------EKNL--DVGISAL 324 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------ccCC--ccccccc
Confidence 34568999999999999876555555444444441 1222 55677888865432222 1222 6789999
Q ss_pred CCCCcHHHHHHHHHHHhC
Q 031782 88 SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~ 105 (153)
+|+|.+++...+-..+..
T Consensus 325 tgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVAS 342 (410)
T ss_pred cCccHHHHHHHHHHHhhh
Confidence 999999999988777653
No 315
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.50 E-value=0.15 Score=36.09 Aligned_cols=69 Identities=10% Similarity=0.190 Sum_probs=48.9
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
....+..+|.++++...+. .+......+++.+... +.++.+|.||+|.... ...+..++.+..|++++.
T Consensus 108 ~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 108 VIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHHHHHHHcCCCeEE
Confidence 4466789999999999884 3666677777666654 6788999999996532 223345677777877653
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.37 E-value=0.022 Score=43.34 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=48.9
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-ChHHH---HHHHH----cCCceEEecC
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQV---TFHRK----KNLQYYEISA 86 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~~---~~~~~----~~~~~~e~Sa 86 (153)
..-||.+++|.-..-.+..+.++.-+-+ +.-++|.||.|.....- ..+.. .+... +..+++.|||
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA 212 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA 212 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence 3457888988888765555544432222 34578899999543111 11111 11111 2257999999
Q ss_pred CCCCCcHHHHHHHHHHHh
Q 031782 87 KSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~ 104 (153)
.++.|++++++.|.+.-.
T Consensus 213 ~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 213 LEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987653
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.27 E-value=0.079 Score=34.73 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=29.5
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 58 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK 58 (153)
....+..+|++++|+|.++... .....++..+. .+.|+++|.||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 3444488999999999887321 22233334443 37999999998
No 318
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.18 E-value=0.073 Score=37.08 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=35.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 59 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~ 59 (153)
.++..|+..+|++|+|.+.+...+-.....|....... ...+++|.||.
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 67889999999999999999855544555555555544 44588899984
No 319
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.02 E-value=0.078 Score=42.69 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=40.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 78 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~ 78 (153)
..+..+|++|-|.|.-||.+-.. +..|+.. ...+...|+|.||+||..+++-+....+.+..+
T Consensus 142 kvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 142 KVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---AHGNKKLILVLNKIDLVPREVVEKWLVYLRREG 206 (435)
T ss_pred HHHhhhheEEEeeeccCCCCCCChhHHHHHHh---ccCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence 34457899999999999875543 3344322 223588999999999965544443333334334
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=95.02 E-value=0.094 Score=39.59 Aligned_cols=56 Identities=7% Similarity=-0.040 Sum_probs=35.7
Q ss_pred hhhhhHhhhhc-CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc
Q 031782 7 NVLIILICSIH-GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 64 (153)
Q Consensus 7 ~~~~~~~~~~~-ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~ 64 (153)
...+...|+++ .+++++|.|.+..-.-.+...+...+... ..++++|.||+|..++
T Consensus 151 i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~D~~~~ 207 (240)
T smart00053 151 IKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECCCCCCc
Confidence 34568889995 45889999876421111212333333333 7899999999998753
No 321
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.91 E-value=0.079 Score=46.07 Aligned_cols=52 Identities=19% Similarity=0.048 Sum_probs=35.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.+.....+....|.. ... .+.|.++++||+|...
T Consensus 101 ~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 101 GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhccc
Confidence 345678999999999999986432222223322 222 2678899999999853
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.73 E-value=0.17 Score=39.42 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=50.4
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHH----HHHH----HH--cCCceEEec
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFH----RK--KNLQYYEIS 85 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~----~~~~----~~--~~~~~~e~S 85 (153)
.-+|.+++|--..--+..+-++. -+. .+--++|.||.|.......... ..+. .. +.-+++.||
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~ 235 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTS 235 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEee
Confidence 35687777766554444443332 222 2345788999996532111111 1111 11 235799999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|.+|+|+.++++.+......
T Consensus 236 A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 236 ALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eccCCCHHHHHHHHHHHHHH
Confidence 99999999999999887743
No 323
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.63 E-value=0.22 Score=43.40 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=55.5
Q ss_pred hHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC-C------ccc-----------ChH
Q 031782 11 ILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-N------RQV-----------KAK 69 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~-~------~~v-----------~~~ 69 (153)
+.-....||.+|+|+|+.- +.+.+.+ ..++.. +.|+|+..||+|.. . ..+ ..+
T Consensus 557 RsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhccccccceEEEEeehhccCCcchhHHH----HHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 3334457999999999964 3344433 223333 78999999999963 1 111 000
Q ss_pred H--------HHHHHH------------cC--CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 70 Q--------VTFHRK------------KN--LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 70 ~--------~~~~~~------------~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
. ..|+.. .+ ++.+.+||.+|+||-+++.+|+.....
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 0 011111 01 246799999999999999999876643
No 324
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.57 E-value=0.25 Score=37.95 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=49.2
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
+.+.+||.+|+|--.|- -.+.+++..++-+.+. ++|..+|.||.++. .+ +.++++++.+++++
T Consensus 181 ~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f--~ip~~iViNr~~~g---~s-~ie~~~~e~gi~il 243 (284)
T COG1149 181 ASLKGADLAILVTEPTP-FGLHDLKRALELVEHF--GIPTGIVINRYNLG---DS-EIEEYCEEEGIPIL 243 (284)
T ss_pred HhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh--CCceEEEEecCCCC---ch-HHHHHHHHcCCCee
Confidence 45779999999988884 4677777777777766 89999999999653 23 56788888888765
No 325
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.54 E-value=0.26 Score=40.01 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=51.1
Q ss_pred hhcCcEEEEEEeCCChhhH--hhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCC
Q 031782 15 SIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYN 91 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~ 91 (153)
+..+|++|-|.|..++-.- ..+..| ++...++..+++|.|||||...-+... ...+.+++-.--|..|.....|
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~y---lkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfG 287 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVEEY---LKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFG 287 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHHHH---HhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccc
Confidence 4478999999999987422 223333 333345788999999999954333222 2234444443356667666666
Q ss_pred cHHHHHHHHHHH
Q 031782 92 FEKPFLYLARKL 103 (153)
Q Consensus 92 v~~lf~~l~~~i 103 (153)
--.++..|.+..
T Consensus 288 KgalI~llRQf~ 299 (572)
T KOG2423|consen 288 KGALIQLLRQFA 299 (572)
T ss_pred hhHHHHHHHHHH
Confidence 555555544443
No 326
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.1 Score=39.80 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=56.4
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-------------------cc-------------
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------------------RQ------------- 65 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------------~~------------- 65 (153)
..++++|||.+....+..++.|+..-.-..-+ .++.+|||.|... +.
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 46899999999998999999997532211102 2456799998521 00
Q ss_pred ------c------Ch--HHHHHHHHcCCceEEecCCC------------CCCcHHHHHHHHHHH
Q 031782 66 ------V------KA--KQVTFHRKKNLQYYEISAKS------------NYNFEKPFLYLARKL 103 (153)
Q Consensus 66 ------v------~~--~~~~~~~~~~~~~~e~Sa~~------------~~~v~~lf~~l~~~i 103 (153)
. .. ....|+.++|+.|++.||.. ..||+.+|..|-...
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 0 01 12467888999999999842 247888888776554
No 327
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=93.57 E-value=0.27 Score=41.38 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred cCcEEEEEEeCCCh---hhHh---hHHHHHHHHHhhcCCCcEEEEeeCCCCCC--cc----cChHHHHHH-HHc-----C
Q 031782 17 HGQCAIIMFDVTAR---LTYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQ----VKAKQVTFH-RKK-----N 78 (153)
Q Consensus 17 ~ad~~ilv~d~~~~---~s~~---~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~--~~----v~~~~~~~~-~~~-----~ 78 (153)
.||++++|+|.+-- ..|+ +..+- ..+.+...-..++++.||.|+.+ +. +......|. +.. +
T Consensus 278 qaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~ 356 (603)
T KOG0458|consen 278 QADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESS 356 (603)
T ss_pred ccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 58999999999742 1232 11121 12222222356889999999875 21 122223444 333 3
Q ss_pred CceEEecCCCCCCcHHH
Q 031782 79 LQYYEISAKSNYNFEKP 95 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~l 95 (153)
+.|+.||+.+|+|+...
T Consensus 357 v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 357 VKFIPISGLSGENLIKI 373 (603)
T ss_pred cceEecccccCCccccc
Confidence 57999999999997644
No 328
>PTZ00416 elongation factor 2; Provisional
Probab=93.48 E-value=0.15 Score=45.10 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=34.9
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
....++.+|++|+|+|.++.-.......| ..+... ++|++++.||+|+.
T Consensus 109 ~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 109 VTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred HHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence 45667889999999999875333333333 333333 68999999999986
No 329
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.46 E-value=1.4 Score=31.48 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=58.4
Q ss_pred hhcCcEEEEEEeCCCh-------hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 15 SIHGQCAIIMFDVTAR-------LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~-------~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
++....=.+++|.+|. +-...+..|+.+++.......+++|-|-.-...+....+...+.+.+|++++.-+++
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~k 115 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAK 115 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCC
Confidence 5666777788888762 223456778888887643335888888753322222334667889999999999999
Q ss_pred CCCCcHHHHHHHH
Q 031782 88 SNYNFEKPFLYLA 100 (153)
Q Consensus 88 ~~~~v~~lf~~l~ 100 (153)
...+..++...+.
T Consensus 116 KP~~~~~i~~~~~ 128 (168)
T PF09419_consen 116 KPGCFREILKYFK 128 (168)
T ss_pred CCccHHHHHHHHh
Confidence 8877776666553
No 330
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.78 Score=36.75 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=58.0
Q ss_pred hhhhhHhhhhcC---cEEEEEEeCCChhhHhhHHH-HHHHHHhhcCCCcEEEEeeCCCCCCc---cc--ChHHHHHHHH-
Q 031782 7 NVLIILICSIHG---QCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR---QV--KAKQVTFHRK- 76 (153)
Q Consensus 7 ~~~~~~~~~~~a---d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~p~vlv~nK~Dl~~~---~v--~~~~~~~~~~- 76 (153)
+..+.+..+.+| |..++|+|+....--+..+- .+.++. -...|+|.||+|+..+ .. ........+.
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 456667777776 67788999976322222221 233332 2457778888887531 11 1111222222
Q ss_pred --c----CCceEEecCCCC----CCcHHHHHHHHHHHhCC
Q 031782 77 --K----NLQYYEISAKSN----YNFEKPFLYLARKLAGD 106 (153)
Q Consensus 77 --~----~~~~~e~Sa~~~----~~v~~lf~~l~~~i~~~ 106 (153)
. +.+++++||+.| +++.++.+.|...++.-
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 1 268999999999 78888888888888653
No 331
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=93.23 E-value=1.1 Score=32.15 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=58.1
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccC-hHHHHHHHHcCCceEEecCCCCCCcH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~-~~~~~~~~~~~~~~~e~Sa~~~~~v~ 93 (153)
..|.++|++|.+...|+..++.=+..+.... -++ +.++++-....+ -.+. .+..+++..+.++++.+--.+.++..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 4699999999999988887765433332221 233 334444433332 3343 34679999999999998888887777
Q ss_pred HHHHHHHHHHh
Q 031782 94 KPFLYLARKLA 104 (153)
Q Consensus 94 ~lf~~l~~~i~ 104 (153)
.+=+.|.+.+.
T Consensus 143 ~lAqRLL~~lq 153 (176)
T PF11111_consen 143 SLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHH
Confidence 77777776664
No 332
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.10 E-value=0.23 Score=44.02 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=34.2
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
...++.+|++|+|+|.+..-.......|.. +... ++|++++.||+|..
T Consensus 116 ~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 116 TAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred HHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC--CCCEEEEEECCccc
Confidence 445678999999999987544333334433 3322 78999999999986
No 333
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.00 E-value=0.93 Score=38.19 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=50.5
Q ss_pred HhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec--CCCCCCcHHHHHHHHHHHhC
Q 031782 33 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 33 ~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~~~i~~ 105 (153)
+.++.+-++.++++ ++|++++.||.|..........++++.+.|+++..+. ++=|+|-.++-+.+++.+.+
T Consensus 358 l~NL~RHIenvr~F--GvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 358 FANLERHIENIRKF--GVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhc
Confidence 44455555556655 8999999999997544334446688999999877544 55677777888888877753
No 334
>COG3596 Predicted GTPase [General function prediction only]
Probab=92.58 E-value=1.3 Score=34.19 Aligned_cols=101 Identities=6% Similarity=-0.034 Sum_probs=67.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---------cChHHH-------
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQV------- 71 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---------v~~~~~------- 71 (153)
....+.|+...|.++++.+..++.---+.+.|.+ +...+-+.+++++.|-+|..... ......
T Consensus 108 r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~d-Vi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 108 RQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRD-VIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHHHHHHhhhccEEEEeccCCCccccCCHHHHHH-HHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 3456778889999999999998754334444443 33333468999999999975421 111111
Q ss_pred -HHHHHcC--CceEEecCCCCCCcHHHHHHHHHHHhCCCCC
Q 031782 72 -TFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNL 109 (153)
Q Consensus 72 -~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 109 (153)
...+.+. .+++.+|...+.|++.+...+++.++.....
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 1112222 3688888999999999999999999854433
No 335
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.56 E-value=0.26 Score=43.03 Aligned_cols=51 Identities=20% Similarity=0.073 Sum_probs=35.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
..+...++.+|++|+|+|............|.. .... +.|.+++.||+|+.
T Consensus 102 ~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc--CCCeEEEEECchhh
Confidence 345667889999999999886533333333432 2222 57889999999975
No 336
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.30 E-value=0.17 Score=40.63 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=35.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh----------hHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL----------TYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 62 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~ 62 (153)
...+-+|+.+++++|||+++++-+ .+.+--..++.+.+.. .+.|++|+.||.|+.
T Consensus 250 RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 250 RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHH
T ss_pred hhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHH
Confidence 456778999999999999987421 1222222333333321 579999999999973
No 337
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=92.28 E-value=0.24 Score=42.66 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=35.7
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
-+...++-+|++++|+|+.+.-++....-....++ .+.|+++|.||.|..
T Consensus 213 E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 213 ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHHH
Confidence 34556788999999999987656554322222333 279999999999964
No 338
>PRK09602 translation-associated GTPase; Reviewed
Probab=92.28 E-value=0.4 Score=38.86 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHH-HHHHHHHHHhCCC
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDP 107 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~-lf~~l~~~i~~~~ 107 (153)
.+|+++|.||.|+.... .....+....+..++.+||+.+.++.+ +...++..++...
T Consensus 217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred CCCEEEEEEchhcccch--HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 68999999999975211 111222222345689999999999998 7778877776643
No 339
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.94 E-value=0.2 Score=39.35 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=43.3
Q ss_pred CcEEEEeeCCCCCCcccChH----HHHHHHHc---CCceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 50 IPIVLCGNKVDVKNRQVKAK----QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 50 ~p~vlv~nK~Dl~~~~v~~~----~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
..++++.||+||..+....+ .+.|.+.. +.+++.+||.-++|++-+.+.+++.++.-.
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 56899999999975332221 23443332 468999999999999999999999997643
No 340
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=91.46 E-value=1.9 Score=35.08 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCcEEEEeeCCCCCCcc----cChHHHH----------------------HHHHcC---CceEEecCCCCCCcHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQ----VKAKQVT----------------------FHRKKN---LQYYEISAKSNYNFEKPFLYL 99 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~----v~~~~~~----------------------~~~~~~---~~~~e~Sa~~~~~v~~lf~~l 99 (153)
+.|++++.+|+|+.... +-++... .+-+.+ ++++.+|+-+|+|++-+ ..+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~ 333 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEF 333 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHH
Confidence 78999999999997421 1111111 111222 48999999999998743 334
Q ss_pred HHHHhC
Q 031782 100 ARKLAG 105 (153)
Q Consensus 100 ~~~i~~ 105 (153)
...++.
T Consensus 334 f~~Lp~ 339 (527)
T COG5258 334 FLLLPK 339 (527)
T ss_pred HHhCCc
Confidence 444443
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=91.21 E-value=0.79 Score=35.93 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=41.2
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC-cc----cChHHHHHHHHcCC-----ceEEec
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQ----VKAKQVTFHRKKNL-----QYYEIS 85 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~-~~----v~~~~~~~~~~~~~-----~~~e~S 85 (153)
+.|++|+|++.++..-=+...+.+ ..++. ++| ++++.||+|+.+ ++ +..+..++...++. +++.-|
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHiL-larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gS 174 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHIL-LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGS 174 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhhh-hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeech
Confidence 569999999999853222222211 12222 565 556799999985 22 23344567777754 577777
Q ss_pred CC
Q 031782 86 AK 87 (153)
Q Consensus 86 a~ 87 (153)
|.
T Consensus 175 al 176 (394)
T COG0050 175 AL 176 (394)
T ss_pred hh
Confidence 65
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=0.4 Score=38.68 Aligned_cols=53 Identities=15% Similarity=0.014 Sum_probs=37.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
....=|...+|.++++||...-+--.+....+..++.+ .-.+-+|.||.|..+
T Consensus 173 ~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 173 GVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQVD 225 (532)
T ss_pred HHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEEEeccccccC
Confidence 34455778999999999987654444444555566655 556888999999865
No 343
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=90.10 E-value=1.2 Score=38.81 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=35.0
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..++-+|++|+|+|....-..+...-|..... + ++|.+++.||.|...
T Consensus 95 rslrvlDgavvVvdaveGV~~QTEtv~rqa~~-~--~vp~i~fiNKmDR~~ 142 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTETVWRQADK-Y--GVPRILFVNKMDRLG 142 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHHHHHHHHhh-c--CCCeEEEEECccccc
Confidence 34677899999999987544444445654433 3 799999999999764
No 344
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=89.68 E-value=0.85 Score=34.87 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=48.2
Q ss_pred cCcEEEEEEeCCChhhH--h--hHHH----HHHHHHhh---c-CCCcEEEEeeCCCCCCc--ccChH--HHHHHHHcCCc
Q 031782 17 HGQCAIIMFDVTARLTY--K--NVPT----WHRDLCRV---C-ENIPIVLCGNKVDVKNR--QVKAK--QVTFHRKKNLQ 80 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~--~--~~~~----~~~~i~~~---~-~~~p~vlv~nK~Dl~~~--~v~~~--~~~~~~~~~~~ 80 (153)
-.+++|+++|+.+--.- . .+.. +...+.+. . -.+|+-+|.||+|+... +.... .....+-+|..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 46999999999642111 0 1222 22333322 1 48999999999998741 11110 12223444543
Q ss_pred eEEecCCCCCC---cHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYN---FEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~---v~~lf~~l~~~i~~~ 106 (153)
+-......+.. +++.|..+...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 33333334444 677777777766543
No 345
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=88.80 E-value=1.6 Score=34.27 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=48.9
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh-HHHHHHHHcCCceEEe--cCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEI--SAKSN 89 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~-~~~~~~~~~~~~~~e~--Sa~~~ 89 (153)
.-+...|++|=|-|..-+-|-.. ..+..+. ...|-++|.||+||.+..... ..+.++..+...++.. +....
T Consensus 42 ~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~---~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~ 116 (335)
T KOG2485|consen 42 NRLPLVDCIIEVRDARIPLSSRN--ELFQDFL---PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCN 116 (335)
T ss_pred hhcccccEEEEeeccccCCcccc--HHHHHhc---CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhh
Confidence 34567899999999865533222 2222232 368899999999998743333 3445555544444333 33333
Q ss_pred CCcHHHHHHHHHHH
Q 031782 90 YNFEKPFLYLARKL 103 (153)
Q Consensus 90 ~~v~~lf~~l~~~i 103 (153)
.++..++..+....
T Consensus 117 ~~v~~l~~il~~~~ 130 (335)
T KOG2485|consen 117 KQVSPLLKILTILS 130 (335)
T ss_pred hccccHHHHHHHHH
Confidence 33555555444333
No 346
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.64 E-value=1.2 Score=33.65 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=31.3
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCC-CcEEEEeeCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV 61 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~p~vlv~nK~Dl 61 (153)
-..+++|.+|.|.|.+- .|+....+..+..... + .++.+|.||.|-
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~el--g~k~i~~V~NKv~e 197 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL--GIKRIFVVLNKVDE 197 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh--CCceEEEEEeeccc
Confidence 34568999999999985 3555444433222222 5 789999999994
No 347
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=86.16 E-value=1.8 Score=32.78 Aligned_cols=52 Identities=21% Similarity=0.149 Sum_probs=38.7
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHH---HHHHhhcCCCcEEEEeeCCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~---~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..-+++.+++++|||++..+-..++..+- +.+.++++...+++...|.|+..
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 34567899999999999876555555543 34445556788999999999974
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=84.36 E-value=5.3 Score=32.55 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=44.4
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc------------------------Ch--HH-
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------------------------KA--KQ- 70 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v------------------------~~--~~- 70 (153)
.|.+++|++.+..-.... .+-+..+... ++|++++.+|.|+..++- .. .+
T Consensus 275 Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv 351 (591)
T KOG1143|consen 275 PHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAV 351 (591)
T ss_pred CceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHH
Confidence 477778877764322211 1223344444 899999999999975321 00 01
Q ss_pred ---HHHHHHcCCceEEecCCCCCCcHH
Q 031782 71 ---VTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 71 ---~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
++.+..+-.++|.+|..+|+|++-
T Consensus 352 ~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 352 KAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHhccCCceeEEEEeecCccchhH
Confidence 111222336899999999999763
No 349
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=83.55 E-value=0.52 Score=36.50 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=50.7
Q ss_pred hhhHhhhhcC---cEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-------ChH---HHHH
Q 031782 9 LIILICSIHG---QCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-------KAK---QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~a---d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-------~~~---~~~~ 73 (153)
.++..|+.+- -.+++..|.+-+ ..-.....|+.+- ++|+.+|.||||...... ... ...+
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 4566676643 345555566542 1222233454442 799999999999753111 110 1111
Q ss_pred ---HHHcCCceEEecCCCCCCcHHHHHHHHH
Q 031782 74 ---HRKKNLQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 74 ---~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
......+++.+|+-++.|++.++-.+..
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 1222356888999999999987766543
No 350
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=83.34 E-value=9 Score=30.82 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=45.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 63 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~ 63 (153)
..-+..++.++|.+++|.+.+- .+...-++++.++++.. ...+..+|.||.....
T Consensus 230 ~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 230 TDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred chHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 3457889999999999999984 58888888998888875 5678889999998653
No 351
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=81.61 E-value=5.3 Score=32.08 Aligned_cols=68 Identities=19% Similarity=0.009 Sum_probs=40.1
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-c----ccChHHHHHHHHcC-----CceEEecCC
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R----QVKAKQVTFHRKKN-----LQYYEISAK 87 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~----~v~~~~~~~~~~~~-----~~~~e~Sa~ 87 (153)
-|++|+|+..+|..--+ -.+-+-..++. .=..+++..||.|+.+ . -|..+..++..++| ++++.-||.
T Consensus 141 MDGaILVVaatDG~MPQ-TrEHlLLArQV-GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 141 MDGAILVVAATDGPMPQ-TREHLLLARQV-GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred cCceEEEEEcCCCCCcc-hHHHHHHHHHc-CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 49999999999853222 22212122222 1134778899999984 2 22334456677765 467776654
No 352
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=81.47 E-value=8.9 Score=25.98 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=35.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
.....+..+|.++++.+.+. .++......++.+.......++.+|.|+++-
T Consensus 59 ~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 59 NVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 34578899999999999874 4555554445455443335677899999874
No 353
>PRK13695 putative NTPase; Provisional
Probab=80.98 E-value=15 Score=25.73 Aligned_cols=84 Identities=10% Similarity=0.093 Sum_probs=46.6
Q ss_pred hhhhhHhhhhcCcEEEEEEe---CCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 7 NVLIILICSIHGQCAIIMFD---VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d---~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
...+....+.++++ +++| ..+..+ ......+..+.. .+.|++++.+|... ......+....+..+++
T Consensus 86 ~~~l~~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~--~~~~~i~v~h~~~~-----~~~~~~i~~~~~~~i~~ 155 (174)
T PRK13695 86 GIPALERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLD--SEKPVIATLHRRSV-----HPFVQEIKSRPGGRVYE 155 (174)
T ss_pred HHHHHHhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHh--CCCeEEEEECchhh-----HHHHHHHhccCCcEEEE
Confidence 34445556667777 5777 222212 111122222222 37899999998542 11223444455566777
Q ss_pred ecCCCCCCcHHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i 103 (153)
+ +.+|-+++.+.+.+.+
T Consensus 156 ~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 156 L---TPENRDSLPFEILNRL 172 (174)
T ss_pred E---cchhhhhHHHHHHHHH
Confidence 7 5778888888887754
No 354
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=80.27 E-value=7.7 Score=32.17 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=38.8
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.-+|.+|+|+|.... .+.-. .++-+.| .++|++-+.||.|...+...+-..++.+.+++..+
T Consensus 103 tAvDsAvMVIDaAKG--iE~qT---~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~ 166 (528)
T COG4108 103 TAVDSAVMVIDAAKG--IEPQT---LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA 166 (528)
T ss_pred HhhheeeEEEecccC--ccHHH---HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence 358999999999763 11110 1122223 48999999999998766544434455666665443
No 355
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.23 E-value=4.2 Score=28.80 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=21.7
Q ss_pred HHHHHHcCCceEEecCCCCCCcHHHHHHHHH
Q 031782 71 VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 71 ~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
.+..+..|++++.+|++++++++++...+..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3556777788888888888888877766554
No 356
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=78.99 E-value=10 Score=29.92 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=39.4
Q ss_pred cCcEEEEEEeCCChhhHhh-HHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC--CceEEecC
Q 031782 17 HGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISA 86 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sa 86 (153)
.-|++|-|+|..+...... +.......... -=++|.||+|+.+...-.......+..+ .+++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----ADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----CcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 3578999999987533222 33333333332 3567899999986442222345555554 56788776
No 357
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=15 Score=32.12 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=34.2
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
-..++..++|++|+|....+.-+.. .++++...... +..++++.||.|...
T Consensus 225 wid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~--KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE--KPNIFILNNKWDASA 275 (749)
T ss_pred HHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc--CCcEEEEechhhhhc
Confidence 3567788999999998887753332 23444444433 456778888999763
No 358
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=77.21 E-value=7.7 Score=31.67 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=33.5
Q ss_pred CCcEEEEeeCCCCCCcccChHHH----HHH--------------------------HHcCCceEEecCCCCCCcHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQV----TFH--------------------------RKKNLQYYEISAKSNYNFEKPFLY 98 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~----~~~--------------------------~~~~~~~~e~Sa~~~~~v~~lf~~ 98 (153)
++|+++|.+|+|+....+-++.- .+. .+.-+++|.+|..+|.|+.- +..
T Consensus 273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-Lkm 351 (641)
T KOG0463|consen 273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKM 351 (641)
T ss_pred cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHH
Confidence 68999999999987533322211 111 11225789999999999873 333
Q ss_pred HHHHH
Q 031782 99 LARKL 103 (153)
Q Consensus 99 l~~~i 103 (153)
....+
T Consensus 352 FLNll 356 (641)
T KOG0463|consen 352 FLNLL 356 (641)
T ss_pred HHhhc
Confidence 33444
No 359
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=75.96 E-value=23 Score=24.43 Aligned_cols=70 Identities=6% Similarity=-0.057 Sum_probs=42.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
....+..+|.+|++.+.+. .++.....+++.+... ......+|.|+++-...........+.+.++.+++
T Consensus 78 ~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 78 FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHHHHhCCCEE
Confidence 4456789999999998874 4566666666555543 12346688999985432111112345555666654
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.68 E-value=20 Score=27.53 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=44.8
Q ss_pred cCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
.+|..++|.|.+-. +.+.. ...+.+.. .+.-+|.||.|-..+ .-....+....++++.+++ +|++++++
T Consensus 190 ~~~~~~LVl~a~~~~~~~~~----~~~f~~~~--~~~g~IlTKlDe~~~--~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 190 APDEVLLVLDATTGQNALEQ----AKVFNEAV--GLTGIILTKLDGTAK--GGIILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCceEEEEEECCCCHHHHHH----HHHHHhhC--CCCEEEEEccCCCCC--ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 37889999999743 23332 22332221 245688999996432 1123456667789998888 88888776
Q ss_pred HHH
Q 031782 96 FLY 98 (153)
Q Consensus 96 f~~ 98 (153)
...
T Consensus 260 ~~~ 262 (272)
T TIGR00064 260 APF 262 (272)
T ss_pred ccC
Confidence 543
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=74.37 E-value=22 Score=28.01 Aligned_cols=71 Identities=7% Similarity=-0.004 Sum_probs=43.5
Q ss_pred cCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
..+..++|.|.+-. +.+... ...... -.+.-+|.||.|-..+ .-.....+...++++..++ +|++++++
T Consensus 232 ~p~~~~LVl~a~~g~~~~~~a----~~f~~~--~~~~giIlTKlD~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 232 APHEVLLVLDATTGQNALSQA----KAFHEA--VGLTGIILTKLDGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCceEEEEEECCCChHHHHHH----HHHHhh--CCCCEEEEECCCCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 45677888888743 233222 222211 1345688999994322 1123466777899999998 88888877
Q ss_pred HH
Q 031782 96 FL 97 (153)
Q Consensus 96 f~ 97 (153)
..
T Consensus 302 ~~ 303 (318)
T PRK10416 302 QP 303 (318)
T ss_pred cc
Confidence 53
No 362
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.27 E-value=30 Score=26.69 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=55.2
Q ss_pred hhhhcCcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc--cC------hH-HHHHHHH----c
Q 031782 13 ICSIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VK------AK-QVTFHRK----K 77 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~--v~------~~-~~~~~~~----~ 77 (153)
..++++-+.|+|.|..+. +....+.....+....++++.+=+...|.|-.... +. .+ ...++.. .
T Consensus 97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v 176 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKV 176 (347)
T ss_pred HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccc
Confidence 357889999999998763 22223333333333334688888999999965321 11 11 1122222 1
Q ss_pred CCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 78 NLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 78 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+.|+-+|.- ...+-++|..+++.+..
T Consensus 177 ~vsf~LTSIy-DHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 177 QVSFYLTSIY-DHSIFEAFSKVVQKLIP 203 (347)
T ss_pred eEEEEEeeec-chHHHHHHHHHHHHHhh
Confidence 2356777755 56788899988887754
No 363
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=71.65 E-value=15 Score=24.21 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.3
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCC
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 59 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~ 59 (153)
.+++..+|+|.. ..........+..+.....++|++++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 455555665555 455556667888888888899999998854
No 364
>PHA02518 ParA-like protein; Provisional
Probab=71.20 E-value=28 Score=24.83 Aligned_cols=52 Identities=6% Similarity=-0.045 Sum_probs=31.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhh---HHHHHHHHHhhcCCCcE-EEEeeCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKN---VPTWHRDLCRVCENIPI-VLCGNKVDV 61 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~---~~~~~~~i~~~~~~~p~-vlv~nK~Dl 61 (153)
.+....+..||.+|++...+.. ++.. +..++..........+. .++.|+.+-
T Consensus 90 ~~~~~~l~~aD~viip~~ps~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 90 ELARAALRIADMVLIPVQPSPF-DIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred HHHHHHHHHCCEEEEEeCCChh-hHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 4567788899999999988743 3433 33444443333234444 466677653
No 365
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.61 E-value=23 Score=25.37 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=43.2
Q ss_pred hhHhhhhcCcEEEEEEeCCC-------hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTA-------RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
++...+...-+=-++.|++| ++.-..+..|+.++... ++.+++|-|..- .....++..++++|+
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~--gi~v~vvSNn~e-------~RV~~~~~~l~v~fi 88 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEA--GIKVVVVSNNKE-------SRVARAAEKLGVPFI 88 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhc--CCEEEEEeCCCH-------HHHHhhhhhcCCcee
Confidence 34444444444445555553 44556778899999876 788888888542 224567788888887
Q ss_pred EecC
Q 031782 83 EISA 86 (153)
Q Consensus 83 e~Sa 86 (153)
.-..
T Consensus 89 ~~A~ 92 (175)
T COG2179 89 YRAK 92 (175)
T ss_pred eccc
Confidence 7433
No 366
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.19 E-value=38 Score=24.07 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=41.7
Q ss_pred cCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCCcHHHHHHHHH
Q 031782 47 CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 47 ~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 101 (153)
..+..++++-|-.-+.+-..... +..+..+.|++++..|.+.....+++.+....
T Consensus 77 ygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 77 YGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred hCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhC
Confidence 35678888888877755333443 56788899999999999999888887776654
No 367
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=68.66 E-value=48 Score=28.07 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec--CCCCCCcHHHHHHHHHHHh
Q 031782 37 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 37 ~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~~~i~ 104 (153)
..-++.++.+ ++|+|+..|+..-..........+++.+.|+.+..+. ++=|+|-.++-+.+++.+.
T Consensus 346 ~~Hi~n~~~f--g~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 346 RKHIENIKKF--GVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHc--CCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 3334445444 8999999999864222112224578888898776554 5667788888888887775
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=68.17 E-value=36 Score=27.10 Aligned_cols=72 Identities=10% Similarity=0.033 Sum_probs=41.6
Q ss_pred cCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
+.|.+++|.|.+... .... ...+... -..--+|.||.|...+. -....++...+.++.+++ +|++++++
T Consensus 252 ~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~--G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKG--GAALSIAYVIGKPILFLG--VGQGYDDL 321 (336)
T ss_pred CCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCc--cHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 466777777775432 1111 1122211 12356778999964321 123456667789988888 89999877
Q ss_pred HHH
Q 031782 96 FLY 98 (153)
Q Consensus 96 f~~ 98 (153)
..+
T Consensus 322 ~~~ 324 (336)
T PRK14974 322 IPF 324 (336)
T ss_pred ccC
Confidence 543
No 369
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=67.73 E-value=12 Score=29.62 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=38.0
Q ss_pred cchhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 4 SCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 4 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
|-||..-....++.||+|| ||| +|....+++..+.++ ++.++++||..=+
T Consensus 122 GDFrS~E~i~Ll~eADIVV-----TNP-PFSLFrEyv~~Li~~--~KkFlIIGN~Nai 171 (336)
T PF13651_consen 122 GDFRSDECIELLKEADIVV-----TNP-PFSLFREYVAQLIEY--DKKFLIIGNINAI 171 (336)
T ss_pred CCcCcHHHHHHHhcCCEEE-----eCC-CcHHHHHHHHHHHHh--CCCEEEEeccccc
Confidence 4466666777888999875 675 677777888888777 7899999998543
No 370
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=67.14 E-value=29 Score=22.25 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=32.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-C-CCcEEEEeeC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK 58 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~-~~p~vlv~nK 58 (153)
.....+..+|.++++.+.+- .+......+++.+.... . ...+.+|.|+
T Consensus 57 ~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 57 VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 34567788999999988764 46777777776665542 2 3456677775
No 371
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=66.93 E-value=9.9 Score=29.54 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=20.5
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+..++|.+-+|+..+|......|.+
T Consensus 345 YpHFTcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 345 YPHFTCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred ccceeEeechHHHHHHHHHHHHHHHH
Confidence 35678888889999999988877743
No 372
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=66.46 E-value=59 Score=27.88 Aligned_cols=64 Identities=9% Similarity=-0.069 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec--CCCCCCcHHHHHHHHHHHh
Q 031782 39 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 39 ~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~~~i~ 104 (153)
-++.++.+ ++|+|+..|+..-..........+++.+.|+.+..+. ++=|+|-.++-+.+++.+.
T Consensus 393 Hi~n~~~f--g~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 393 HIGTVKKS--GINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHc--CCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 34444444 8999999999864222111224567888888766444 5567778888888887775
No 373
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=65.67 E-value=20 Score=27.37 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCcEEEEeeCCCCCCccc--------------Ch---H-HHHHHHH----cC------CceEEecCCCCCCcHHHHHHH
Q 031782 48 ENIPIVLCGNKVDVKNRQV--------------KA---K-QVTFHRK----KN------LQYYEISAKSNYNFEKPFLYL 99 (153)
Q Consensus 48 ~~~p~vlv~nK~Dl~~~~v--------------~~---~-~~~~~~~----~~------~~~~e~Sa~~~~~v~~lf~~l 99 (153)
.+.++++..||.|+.+..+ +. + +..|.-+ .| +....++|.+-+|+.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 4678999999999865322 11 1 1222211 11 234678899999999999999
Q ss_pred HHHHhCC
Q 031782 100 ARKLAGD 106 (153)
Q Consensus 100 ~~~i~~~ 106 (153)
...+++.
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 8888653
No 374
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=64.81 E-value=44 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=32.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh-hcCCCcEEEEeeCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK 62 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~-~~~~~p~vlv~nK~Dl~ 62 (153)
.++...+..||.++++...+- .++..+..-+..+.. .....++-+|.|++|..
T Consensus 128 ~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 128 PITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 456677788999999988863 455555422222222 22244567889998854
No 375
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=64.73 E-value=20 Score=29.79 Aligned_cols=64 Identities=8% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC--CCCCcHHHHHHHHHHH
Q 031782 38 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK--SNYNFEKPFLYLARKL 103 (153)
Q Consensus 38 ~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~--~~~~v~~lf~~l~~~i 103 (153)
+-+.+++.. ++|++++.|-.+=..........++..+++++++.+++. +.+.+..+++.+....
T Consensus 171 rvI~ELk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 171 RVIEELKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHHHHHHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 456667766 899999999887332222222456778889998887754 3334555555544443
No 376
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=64.41 E-value=53 Score=27.52 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEe--cCCCCCCcHHHHHHHHHHHhC
Q 031782 38 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI--SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 38 ~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~--Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.-++.++.+ ++|+|+..||.-...........+++.++++++..+ =++-|+|-.++-+.++..+.+
T Consensus 360 ~Hi~Nikkf--gvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 360 KHIENIKKF--GVPVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHHHHHc--CCCeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 334445544 899999999975321111122457888999776543 377888999999999988876
No 377
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=63.15 E-value=19 Score=29.06 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCcEEEEeeCCCCCCcccC---hHHHHHHHHcCCceEEecCC
Q 031782 49 NIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~---~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..|+++++||.|....... .....++...+..++.+||.
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 7899999999997643221 22346677777889999976
No 378
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=62.54 E-value=12 Score=26.42 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 64 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~ 64 (153)
..+.+|.|+|..+..........+...... -=++|.||+|+.+.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~----ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF----ADVIVLNKIDLVSD 156 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-----SEEEEE-GGGHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh----cCEEEEeccccCCh
Confidence 468899999997754344444333333322 34677899998653
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.92 E-value=48 Score=27.40 Aligned_cols=70 Identities=7% Similarity=0.047 Sum_probs=40.5
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHH
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
..+|.+++|+|.+... +.-.....+.. ..+ .-+|.||.|-..+ .-.........+.|+.+++ +|+++++
T Consensus 204 ~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~--~G~~ls~~~~~~~Pi~fig--~Ge~v~D 273 (437)
T PRK00771 204 VKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAK--GGGALSAVAETGAPIKFIG--TGEKIDD 273 (437)
T ss_pred hcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCc--ccHHHHHHHHHCcCEEEEe--cCCCccc
Confidence 3678888898886532 11122222222 222 3567899995322 1223466777888887777 5666655
Q ss_pred H
Q 031782 95 P 95 (153)
Q Consensus 95 l 95 (153)
+
T Consensus 274 l 274 (437)
T PRK00771 274 L 274 (437)
T ss_pred C
Confidence 5
No 380
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=59.86 E-value=59 Score=23.65 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=52.7
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC---CCcEEEEeeCCCCCCc-ccC-------hH-HHHHHHHcCCce
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNR-QVK-------AK-QVTFHRKKNLQY 81 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~p~vlv~nK~Dl~~~-~v~-------~~-~~~~~~~~~~~~ 81 (153)
...+.|++++|+..+.. +-.+. ..+..+..... -..+++|.|..|.... .+. .. ...+.+..+-.|
T Consensus 80 ~~~g~ha~llVi~~~r~-t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~ 157 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGRF-TEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRY 157 (212)
T ss_dssp TTT-ESEEEEEEETTB--SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ccCCCeEEEEEEecCcc-hHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEE
Confidence 34578999999999832 21111 22223333221 2357888888876542 211 11 235566677777
Q ss_pred EEecCC------CCCCcHHHHHHHHHHHhCCC
Q 031782 82 YEISAK------SNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 82 ~e~Sa~------~~~~v~~lf~~l~~~i~~~~ 107 (153)
.....+ ....+.+++..+-..+..+.
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 777665 33457888888887776654
No 381
>PTZ00258 GTP-binding protein; Provisional
Probab=58.20 E-value=12 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=26.9
Q ss_pred CCcEEEEeeCC--CCCC--cccChHHHHHHHHc-CCceEEecCCCCC
Q 031782 49 NIPIVLCGNKV--DVKN--RQVKAKQVTFHRKK-NLQYYEISAKSNY 90 (153)
Q Consensus 49 ~~p~vlv~nK~--Dl~~--~~v~~~~~~~~~~~-~~~~~e~Sa~~~~ 90 (153)
..|+++|+|+. |+.. .........++... +..++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 57999999999 7622 11112234555566 4789999976443
No 382
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=58.20 E-value=36 Score=25.75 Aligned_cols=50 Identities=2% Similarity=-0.152 Sum_probs=25.8
Q ss_pred Hhhhh--cCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcC---CCcEEEEeeCCCCC
Q 031782 12 LICSI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 62 (153)
Q Consensus 12 ~~~~~--~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~---~~p~vlv~nK~Dl~ 62 (153)
..|+. ..|++++|..++... +... ...++.+..... -.++++|.||+|..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 33554 567777776665421 1111 123333333221 14688888888875
No 383
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=57.82 E-value=17 Score=33.76 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=30.9
Q ss_pred hcCcEEEEEEeCCChhh--H-------hhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC
Q 031782 16 IHGQCAIIMFDVTARLT--Y-------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 63 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s--~-------~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~ 63 (153)
+-.+++|+++|+.+--. - ..+...+.++.+.. -..|+-+|.||+|+..
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 35799999999975311 1 12222333343332 4899999999999863
No 384
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=57.62 E-value=8.8 Score=29.03 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=23.1
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++++..||+++.|++.++..+...++
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 47999999999999999999987764
No 385
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=57.18 E-value=19 Score=30.56 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=47.7
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-ChHHHHHH--------HH---cC-C----
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFH--------RK---KN-L---- 79 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~~~~~--------~~---~~-~---- 79 (153)
+-.++..|.|.++..- . ....+.........++++||+|+..... ....+.+. +. .| .
T Consensus 110 ~~~~~~~vvd~~d~p~--~---i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~ 184 (572)
T KOG1249|consen 110 NPALARKVVDLSDEPC--S---IDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFD 184 (572)
T ss_pred cccceEEeeecccCcc--c---cccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccc
Confidence 4456777788876432 1 2223333332334789999999975322 11111110 00 01 1
Q ss_pred --ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 --QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 --~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
....+|+++|.|+++++..|+....
T Consensus 185 f~~~~~~r~ktgyg~eeLI~~lvd~~d 211 (572)
T KOG1249|consen 185 FDHVDLIRAKTGYGIEELIVMLVDIVD 211 (572)
T ss_pred hhhhhhhhhhhcccHHHHHHHhhheee
Confidence 2457899999999999998887664
No 386
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=56.41 E-value=19 Score=25.01 Aligned_cols=40 Identities=13% Similarity=0.005 Sum_probs=22.1
Q ss_pred cCcEEEEEEeCCChhhH-hhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 17 HGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
..+.++.+.|..+.... .....+...+.. --++|.||+|+
T Consensus 118 ~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 118 LLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred eeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence 57888999997653221 111223333322 23457899985
No 387
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=56.37 E-value=29 Score=23.52 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=39.2
Q ss_pred cEEEEeeCCCCCC--ccc-C--h--H-HHHHHHHcCC-----ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 51 PIVLCGNKVDVKN--RQV-K--A--K-QVTFHRKKNL-----QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 51 p~vlv~nK~Dl~~--~~v-~--~--~-~~~~~~~~~~-----~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
-++++|.|.+-.+ ..- . . + ..++..+.|+ .++++||..++.+.+.++..+..+.+.
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 4677888887543 111 1 1 1 2345666664 589999999999999999999988653
No 388
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=55.91 E-value=1.2e+02 Score=26.14 Aligned_cols=64 Identities=8% Similarity=-0.028 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHH-cCCceEEec--CCCCCCcHHHHHHHHHHHh
Q 031782 39 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEIS--AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 39 ~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~-~~~~~~e~S--a~~~~~v~~lf~~l~~~i~ 104 (153)
-++.++.+ ++|+|+..|+..-..........+++.+ .++.+..+. ++=|+|-.++-+.+++.+.
T Consensus 385 Hi~n~~~f--g~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 385 HINNVAQY--GLPVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHc--CCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 34444444 8999999999763221111223467777 566766554 5667788888888887775
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.99 E-value=79 Score=26.08 Aligned_cols=70 Identities=7% Similarity=0.029 Sum_probs=40.3
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
+.+.+++|.|.+.. ++...+...+.... + ..=+|.||.|-..+. -.....+...++|+.+++ +|++++++
T Consensus 212 ~p~e~lLVvda~tg---q~~~~~a~~f~~~v-~-i~giIlTKlD~~~~~--G~~lsi~~~~~~PI~fi~--~Ge~i~dl 281 (428)
T TIGR00959 212 NPDEILLVVDAMTG---QDAVNTAKTFNERL-G-LTGVVLTKLDGDARG--GAALSVRSVTGKPIKFIG--VGEKIDDL 281 (428)
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhhC-C-CCEEEEeCccCcccc--cHHHHHHHHHCcCEEEEe--CCCChhhC
Confidence 46788889887643 23333333343221 2 235678999953211 124567777888887777 45555554
No 390
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.17 E-value=47 Score=20.96 Aligned_cols=47 Identities=9% Similarity=-0.078 Sum_probs=25.6
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 100 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 100 (153)
+.-+|++.+-+= +........+.|++.+++++.+.. .|+..+...|.
T Consensus 48 ~aD~VIv~t~~v--sH~~~~~vk~~akk~~ip~~~~~~---~~~~~l~~~l~ 94 (97)
T PF10087_consen 48 KADLVIVFTDYV--SHNAMWKVKKAAKKYGIPIIYSRS---RGVSSLERALE 94 (97)
T ss_pred CCCEEEEEeCCc--ChHHHHHHHHHHHHcCCcEEEECC---CCHHHHHHHHH
Confidence 345666655432 112223355778888888888743 35554444443
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.92 E-value=1.3e+02 Score=25.86 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=39.9
Q ss_pred EEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc-HHH
Q 031782 20 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF-EKP 95 (153)
Q Consensus 20 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l 95 (153)
..++|++.+- ++.++...+..+.. ..+.-+|.||.|...+ .-........+++++.+++ +|.+| +++
T Consensus 460 a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDEt~~--lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL 527 (559)
T PRK12727 460 TSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDETGR--FGSALSVVVDHQMPITWVT--DGQRVPDDL 527 (559)
T ss_pred CcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcCccc--hhHHHHHHHHhCCCEEEEe--CCCCchhhh
Confidence 4566666653 34444444444433 2467789999996322 1234466777888887777 67776 444
No 392
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=51.23 E-value=21 Score=30.39 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec--CCCCCCcHHHHHHHHHHH
Q 031782 35 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 35 ~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~~~i 103 (153)
++..-++.++.+ ++|+|+..|+.--..........+++++.|+++..+. ++=|+|-.++-+.+++.+
T Consensus 359 NL~rHIeNik~f--GvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 359 NLERHIENIKKF--GVPVVVAINRFPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHCT--T--EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHhc--CCCeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 333344445444 8999999999763221111223466777787754443 557788889999999888
No 393
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=51.02 E-value=53 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.6
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCC
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 59 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~ 59 (153)
-+++|..-..+-+.|+.+=.+|+.+.-...+.-.+|++|||-
T Consensus 84 y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKn 125 (180)
T COG4502 84 YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKN 125 (180)
T ss_pred heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCC
Confidence 356666655566889998889987765544556799999984
No 394
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=50.83 E-value=60 Score=23.18 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=29.2
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 62 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~ 62 (153)
..+.+|.+|+|.+.... +...+..-++.+.+. +.+ +-+|.||++..
T Consensus 147 ~~~~~D~vilV~~~~~~-~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGEI-KKRDVQKAKEQLEQT--GSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCCC-CHHHHHHHHHHHHhC--CCCEEEEEEeCcccc
Confidence 45678999999888643 445555545555443 344 45788998854
No 395
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=47.82 E-value=56 Score=21.81 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=27.5
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
.+..+++.=|++-.+....+....++ .++|++.|++|..|.
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l~~lc~~-----~~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHLPALCEE-----KNVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHHh-----cCCCEEEeCCHHHHH
Confidence 37788888888755555544443322 289999999998763
No 396
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=47.68 E-value=16 Score=27.23 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.5
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+|++..||.++.|+..++..+++.++
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHhcC
Confidence 58899999999999999999998764
No 397
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.50 E-value=47 Score=25.91 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=12.4
Q ss_pred CCcEEEEeeCCCCC
Q 031782 49 NIPIVLCGNKVDVK 62 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~ 62 (153)
.+|+++||.|.|.-
T Consensus 190 P~PV~IVgsKYDvF 203 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVF 203 (363)
T ss_pred CCceEEeccchhhh
Confidence 58999999999965
No 398
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=47.39 E-value=44 Score=28.90 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=34.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCc
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR 64 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~ 64 (153)
.|+++|..+.+++|+++-=. |.+........+-..+ .+...|+|.+|.|+.+.
T Consensus 440 ~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 440 SISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred HHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 57899999999999986432 2222111222222222 37789999999999864
No 399
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=47.38 E-value=88 Score=22.65 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=45.4
Q ss_pred cCcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec
Q 031782 17 HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 17 ~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S 85 (153)
+||.+-++.++... ..++....++..+.+.+.+.|+.++....-+... .....-+.+.+.|..|+.||
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~-~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE-EIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH-HHHHHHHHHHHhCCCEEEcC
Confidence 89999999998632 2334455666677776666777777666655211 11123467888899999998
No 400
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=47.28 E-value=76 Score=20.46 Aligned_cols=45 Identities=9% Similarity=-0.143 Sum_probs=24.3
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
.-++.||++|..+|...+++-...+--+ ... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~--A~a--lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGY--AYA--LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHH--HHH--TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHH--HHH--CCCEEEEEEcCCcc
Confidence 4566788888888874433332222111 111 26788887766553
No 401
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.16 E-value=42 Score=21.80 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=33.3
Q ss_pred cEEEEEEeCCChhhHhhHHHHHHHHHhhcC-CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEe
Q 031782 19 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 19 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 84 (153)
+.-+++++.+....+..+..+++.++.... +++ +++|.+.-. ...+.++..|...+..
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~-i~vGG~~~~-------~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLVGGAIVT-------RDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCe-EEEECCCCC-------hhHHHHHHcCCeEEEC
Confidence 333555566666678888888888888754 444 444444321 1113556667655443
No 402
>PLN02759 Formate--tetrahydrofolate ligase
Probab=47.14 E-value=1.8e+02 Score=25.39 Aligned_cols=63 Identities=5% Similarity=-0.118 Sum_probs=41.6
Q ss_pred HHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC-CceEEec--CCCCCCcHHHHHHHHHHHh
Q 031782 40 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEIS--AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 40 ~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-~~~~e~S--a~~~~~v~~lf~~l~~~i~ 104 (153)
++.++.+ ++|+|+..|+..-..........+++.+.| +.+..+. ++=|+|-.++-+.+++.+.
T Consensus 443 i~n~~~f--g~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 443 IENTKSY--GVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HHHHHHc--CCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 3344443 899999999986432211222457788888 4665554 5567788888888887775
No 403
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=46.69 E-value=90 Score=23.07 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=46.1
Q ss_pred hcCcEEEEEEeCCC--hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecC
Q 031782 16 IHGQCAIIMFDVTA--RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISA 86 (153)
Q Consensus 16 ~~ad~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa 86 (153)
.+||.+-+|+++.. ...++.+.+.+..+...+.+.|+.++.-..-|.+.+. ...-+++.+.|..|+.||.
T Consensus 82 ~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei-~~a~~ia~eaGADfvKTsT 153 (211)
T TIGR00126 82 YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI-RKACEICIDAGADFVKTST 153 (211)
T ss_pred cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH-HHHHHHHHHhCCCEEEeCC
Confidence 37999999999873 2245555556666666665677777666655543221 1234678888999999993
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.41 E-value=1.4e+02 Score=24.68 Aligned_cols=69 Identities=7% Similarity=-0.056 Sum_probs=38.6
Q ss_pred cCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
+.+-++||.|.+-. +... ....+.+. -.+.-+|.||.|-..+. -.........+.|+.+++ +|++++++
T Consensus 212 ~p~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~arg--G~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHAKG--GGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred CCcEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCCCc--cHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 46778888887642 2222 22223222 23566889999964221 112355666777777766 56655554
No 405
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=43.45 E-value=19 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.5
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+|++..||.++.|+..++..|+..++
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCC
Confidence 57999999999999999999998764
No 406
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=42.80 E-value=46 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=25.5
Q ss_pred CCcEEEEeeCCCCC--C-cccChHHHHHHHHcCCceEEecCC
Q 031782 49 NIPIVLCGNKVDVK--N-RQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~--~-~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..|+++++|+.|.. . .....+...++...+.+++.+||+
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~ 240 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK 240 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence 47999999998842 1 111122345666678888999874
No 407
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=42.79 E-value=39 Score=26.07 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=33.0
Q ss_pred cCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-ccC---hHHHHHHHHcCCceEEec
Q 031782 17 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~---~~~~~~~~~~~~~~~e~S 85 (153)
..|+++++++.+.. .+..++ ..++++ +..+++|-|..|.|.... +.. .....-.+.+++++|.-.
T Consensus 113 RVH~cLYfI~pt~~-~L~~~Di~~mk~L---s~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 113 RVHACLYFIPPTGH-GLKPLDIEFMKRL---SKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp -EEEEEEEE-TTSS-SS-HHHHHHHHHH---TTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S----
T ss_pred CcceEEEEEcCCCc-cchHHHHHHHHHh---cccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccc
Confidence 57999999998753 222221 233344 346889999999998641 111 112233566777766533
No 408
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=42.63 E-value=1.8e+02 Score=25.24 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHH-HcC-CceEEec--CCCCCCcHHHHHHHHHHHhC
Q 031782 40 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKN-LQYYEIS--AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 40 ~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~-~~~-~~~~e~S--a~~~~~v~~lf~~l~~~i~~ 105 (153)
++.++.+ ++|+|+..|+.--..........+++. +.| +.+..+. ++=|+|-.++-+.+++.+.+
T Consensus 430 ien~~~f--gvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~ 497 (625)
T PTZ00386 430 IQNIRKF--GVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTEN 497 (625)
T ss_pred HHHHHHc--CCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhc
Confidence 3444444 899999999976322111122346777 778 4665544 55677888888888877753
No 409
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=41.92 E-value=21 Score=27.29 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=23.3
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+|++..||.++.|+..++..++..++
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 57899999999999999999988764
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.18 E-value=2.1e+02 Score=24.14 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=42.9
Q ss_pred EEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc-HHHHH--
Q 031782 21 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF-EKPFL-- 97 (153)
Q Consensus 21 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf~-- 97 (153)
.++|.|.+-. ...+.+....+.. ....-+|.||.|-... .-....+...+++++.+++ +|++| +++..
T Consensus 368 ~~LVLdAt~~--~~~l~~i~~~f~~---~~~~g~IlTKlDet~~--~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~ 438 (484)
T PRK06995 368 RLLLLNATSH--GDTLNEVVQAYRG---PGLAGCILTKLDEAAS--LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLAN 438 (484)
T ss_pred eEEEEeCCCc--HHHHHHHHHHhcc---CCCCEEEEeCCCCccc--chHHHHHHHHHCCCeEEEe--cCCCChhhhccCC
Confidence 5677777632 2222222222222 2234567899994321 1224577788888888887 78888 66643
Q ss_pred --HHHHHHhC
Q 031782 98 --YLARKLAG 105 (153)
Q Consensus 98 --~l~~~i~~ 105 (153)
.+++.++.
T Consensus 439 ~~~lv~~ll~ 448 (484)
T PRK06995 439 KKFLLHRAFC 448 (484)
T ss_pred HHHHHHHHhc
Confidence 34555544
No 411
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=40.97 E-value=38 Score=19.08 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=14.1
Q ss_pred hHhhhhcCcEEEEEEeCCCh
Q 031782 11 ILICSIHGQCAIIMFDVTAR 30 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~ 30 (153)
--+.+=+++++++||+.++.
T Consensus 26 ELs~LC~~~v~~iv~~~~g~ 45 (51)
T PF00319_consen 26 ELSTLCGVDVALIVFSPDGK 45 (51)
T ss_dssp HHHHHHT-EEEEEEEETTSE
T ss_pred eeeeecCCeEEEEEECCCCC
Confidence 33455589999999998763
No 412
>PRK09602 translation-associated GTPase; Reviewed
Probab=39.63 E-value=63 Score=26.30 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=16.7
Q ss_pred hhhHhh---hhcCcEEEEEEeCC
Q 031782 9 LIILIC---SIHGQCAIIMFDVT 28 (153)
Q Consensus 9 ~~~~~~---~~~ad~~ilv~d~~ 28 (153)
.+...| +++||++++|+|+.
T Consensus 91 glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 91 GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hHHHHHHHHHHHCCEEEEEEeCC
Confidence 355566 89999999999997
No 413
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=39.12 E-value=91 Score=21.62 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=37.9
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCC-cEEEEeeCCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKN 63 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-p~vlv~nK~Dl~~ 63 (153)
....+..+|.+|++.+.+. .+......++..+....... .+.+|.||++..+
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 5567789999999999985 45777777777777653122 4578999998653
No 414
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=38.25 E-value=1.5e+02 Score=21.32 Aligned_cols=65 Identities=8% Similarity=-0.024 Sum_probs=36.9
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCc-EEEEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p-~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
+.||.++++...+. .++.......+.+.... .+.+ ..++.|+++.. .......++.+.++.+++.
T Consensus 140 ~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 140 GKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RETELIDAFAERLGTQVIH 207 (212)
T ss_pred ccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHHHHHHHHHHHcCCCEEE
Confidence 36899999988764 45544444444344332 1333 44889999853 1111245666777766543
No 415
>PRK13556 azoreductase; Provisional
Probab=37.96 E-value=64 Score=23.37 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=24.5
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 46 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~ 46 (153)
.-++.||++|+++-+=+..-=..++.|+..+...
T Consensus 85 ~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 85 NQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHHCCEEEEeccccccCCcHHHHHHHHHHhcC
Confidence 4567899999998887643333567788887754
No 416
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=37.80 E-value=80 Score=24.95 Aligned_cols=45 Identities=4% Similarity=-0.085 Sum_probs=27.2
Q ss_pred cCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcC---CCcEEEEeeCCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 62 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~---~~p~vlv~nK~Dl~ 62 (153)
+.|++++|..++.. .+... ...++.+...+. -.+.++|.|++|..
T Consensus 118 g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 118 TIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 68999999666532 22222 233444444331 25689999999965
No 417
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=37.27 E-value=60 Score=29.00 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=28.2
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
.+..+=+|++++.+|+...-.-+......+-+ ..+...++|.||+|.
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt~~vlrq~~---~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQAW---IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhHHHHHHHHH---HccCceEEEEehhhh
Confidence 45566789999999997532111111111111 135678899999994
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.27 E-value=2.2e+02 Score=25.53 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=45.2
Q ss_pred CcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc-HHH
Q 031782 18 GQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF-EKP 95 (153)
Q Consensus 18 ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l 95 (153)
.+-.++|.|.+-. +.+.++ ...+.....--+-=+|.||.|-..+ .-....+....++++.+++ +|++| +++
T Consensus 294 p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDEt~~--~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDEATH--LGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred CCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCCCCC--ccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 4556778777642 333322 2222211000134577899994321 1123567788888888887 78888 666
Q ss_pred HH----HHHHHHhC
Q 031782 96 FL----YLARKLAG 105 (153)
Q Consensus 96 f~----~l~~~i~~ 105 (153)
.. .+++.++.
T Consensus 367 ~~a~~~~lv~~ll~ 380 (767)
T PRK14723 367 ELAQADELVDRAFA 380 (767)
T ss_pred ccCCHHHHHHHHhc
Confidence 43 35555554
No 419
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.79 E-value=1.2e+02 Score=19.93 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 35 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 35 ~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
.+..++..+.+. +.--+.+ |....-..++.+..+.|++++++.+++.. .....++.+.+.+.|
T Consensus 60 ~~~~~i~~L~~~--~~agL~i--~~~~~~~~iP~~~i~~A~~~~lPli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 60 ELREFIRELAEK--GAAGLGI--KTGRYLDEIPEEIIELADELGLPLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred HHHHHHHHHHHC--CCeEEEE--eccCccccCCHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHHh
Confidence 345566666554 3444444 33322236777788999999999999985 555567777766654
No 420
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=36.05 E-value=30 Score=22.86 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=15.0
Q ss_pred EeeCCCCCCcccChH-HHHHHHHcC-CceEEecCC
Q 031782 55 CGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAK 87 (153)
Q Consensus 55 v~nK~Dl~~~~v~~~-~~~~~~~~~-~~~~e~Sa~ 87 (153)
++||+|+.. ..+ ..++..++. ..++.|||.
T Consensus 1 AaNK~D~~~---a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA---ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc---cHhHHHHHHHhCCCCceeeccHH
Confidence 579999643 222 334544443 678888864
No 421
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=36.05 E-value=1.5e+02 Score=20.48 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=28.0
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
..+.+++|++.....+ ...+...+.+.. + ..-+|.||.|...+.- .....+...++++..
T Consensus 112 ~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g--~~~~~~~~~~~p~~~ 171 (173)
T cd03115 112 KPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG--AALSIRAVTGKPIKF 171 (173)
T ss_pred CCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc--hhhhhHHHHCcCeEe
Confidence 3677777777653321 112333333222 2 2445668877543211 112345555555443
No 422
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=35.16 E-value=1.3e+02 Score=20.62 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=40.3
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcE-EEEeeCCCCC-C-----ccc--ChHHHHHHHHcCCceE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVK-N-----RQV--KAKQVTFHRKKNLQYY 82 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~-vlv~nK~Dl~-~-----~~v--~~~~~~~~~~~~~~~~ 82 (153)
..+|.+++|...+ +.+......+++.+.+. +.++ -+|.|+.+.. + ... ....+.+++.++.+++
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV--NIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHhc--CCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEE
Confidence 4789999998776 35777777777777765 4444 4788998753 1 111 1124566666665543
No 423
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=35.11 E-value=71 Score=23.81 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=31.2
Q ss_pred hcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 16 IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
.++|++|+.-|+++.. ..+....++..+... +.|+++|---+|-
T Consensus 30 ~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~~V~GNhD~ 74 (224)
T cd07388 30 TGADAIVLIGNLLPKAAKSEDYAAFFRILGEA--HLPTFYVPGPQDA 74 (224)
T ss_pred cCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCceEEEcCCCCh
Confidence 4899999999999864 344445555656544 5788888777773
No 424
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=34.86 E-value=1.5e+02 Score=21.75 Aligned_cols=49 Identities=12% Similarity=-0.085 Sum_probs=33.9
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
....+..+|.+|++...+ ..++......++.+.... ..++.++.|+++-
T Consensus 127 ~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 127 FRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence 445677899999998886 346666666665555442 2367788899874
No 425
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=34.57 E-value=42 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=21.9
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
+..+|+-=|++..+.-..+..|.. . .++|++.+++|.+|
T Consensus 43 a~LVilA~D~s~~~~~~~i~~lc~----~-~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 43 AKLVVIAEDVEPPEIVAHLPALCE----E-KGIPYVYVKKKEDL 81 (117)
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHH----H-cCCCEEEeCCHHHH
Confidence 555666666654322233333222 2 27899999888775
No 426
>PRK10867 signal recognition particle protein; Provisional
Probab=33.92 E-value=2.4e+02 Score=23.41 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=39.3
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 96 (153)
..+.+++|.|.+.. ++.-+....+.... + ..-+|.||.|-..+. -.........++|+.+++ +|++++++.
T Consensus 213 ~p~evllVlda~~g---q~av~~a~~F~~~~-~-i~giIlTKlD~~~rg--G~alsi~~~~~~PI~fig--~Ge~v~DLe 283 (433)
T PRK10867 213 NPDEILLVVDAMTG---QDAVNTAKAFNEAL-G-LTGVILTKLDGDARG--GAALSIRAVTGKPIKFIG--TGEKLDDLE 283 (433)
T ss_pred CCCeEEEEEecccH---HHHHHHHHHHHhhC-C-CCEEEEeCccCcccc--cHHHHHHHHHCcCEEEEe--CCCccccCc
Confidence 56777888887642 22222233333221 2 234677999953221 124566777888887777 466655543
No 427
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=33.45 E-value=66 Score=21.31 Aligned_cols=44 Identities=27% Similarity=0.264 Sum_probs=23.8
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCC
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV 61 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl 61 (153)
.++|.+|+.-|+.+.........+.+.+.... ..+ +++.|| .|.
T Consensus 18 ~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~GN-HD~ 62 (135)
T cd07379 18 PDGDVLIHAGDLTERGTLEELQKFLDWLKSLP-HPHKIVIAGN-HDL 62 (135)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC-CCeEEEEECC-CCC
Confidence 57899999999876543333333333333321 222 345566 564
No 428
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.34 E-value=2.5e+02 Score=23.20 Aligned_cols=79 Identities=9% Similarity=-0.044 Sum_probs=44.9
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCc-HHHH
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF-EKPF 96 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf 96 (153)
..-.++|.|.+-. .+.+.+++..+... -.-=+|.||.|-... .-....++...++++..++ +|.+| +++.
T Consensus 300 ~~~~~LVl~at~~--~~~~~~~~~~f~~~---~~~~~I~TKlDEt~~--~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 300 QVKHLLLLNATSS--GDTLDEVISAYQGH---GIHGCIITKVDEAAS--LGIALDAVIRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred CceEEEEEcCCCC--HHHHHHHHHHhcCC---CCCEEEEEeeeCCCC--ccHHHHHHHHhCCCEEEEE--CCCCchhhhh
Confidence 3456788888732 22333333333321 234467899995321 1124567788888888877 78887 5554
Q ss_pred HH----HHHHHhC
Q 031782 97 LY----LARKLAG 105 (153)
Q Consensus 97 ~~----l~~~i~~ 105 (153)
.. +++.++.
T Consensus 371 ~a~~~~lv~~ll~ 383 (420)
T PRK14721 371 EANSRYLLHRIFK 383 (420)
T ss_pred hCCHHHHHHHHhc
Confidence 33 4455544
No 429
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=31.89 E-value=1.6e+02 Score=23.19 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=31.4
Q ss_pred CcEEEEEEeCCChhhHh-hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC--CceEEec
Q 031782 18 GQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEIS 85 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~--~~~~e~S 85 (153)
.+++|.|+|..+..... .......++. .-=++|.||+|+.... .......+..+ .+++.++
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-----~AD~IvlnK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQVG-----YADRILLTKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHHH-----hCCEEEEeccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 47899999987532211 1111112221 2346778999987532 23333344443 5566554
No 430
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=31.04 E-value=90 Score=21.19 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=26.5
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVL 54 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vl 54 (153)
..-|+.|+..-++...+=..+..|+..+++.+ ..+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 34577777666666556666778999998865 3566654
No 431
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=30.74 E-value=41 Score=28.44 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=25.4
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++++..||.++.||..++..++..++.-
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999754
No 432
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=30.45 E-value=73 Score=25.87 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=46.6
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCC--C------cccCh-----HHHHHH----HHc
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVK--N------RQVKA-----KQVTFH----RKK 77 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~--~------~~v~~-----~~~~~~----~~~ 77 (153)
...|.+|++.+. .|...+-|+ ..+++. +.|+.+|.+|+|.. + +.... +.++.+ ++.
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 356888887664 355555444 455555 89999999999951 1 11111 111112 223
Q ss_pred CC---ceEEecCCCCC--CcHHHHHHHHHHHhCCCCCC
Q 031782 78 NL---QYYEISAKSNY--NFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 78 ~~---~~~e~Sa~~~~--~v~~lf~~l~~~i~~~~~~~ 110 (153)
|+ ++|-+|+.+-. +...+.+.|.+.++......
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 43 58999988654 46678888888887765333
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=30.39 E-value=1.9e+02 Score=22.97 Aligned_cols=34 Identities=18% Similarity=0.006 Sum_probs=18.6
Q ss_pred EEEEeeCCCCCCcccChHHHHHHHH-cC--CceEEec
Q 031782 52 IVLCGNKVDVKNRQVKAKQVTFHRK-KN--LQYYEIS 85 (153)
Q Consensus 52 ~vlv~nK~Dl~~~~v~~~~~~~~~~-~~--~~~~e~S 85 (153)
-+++.||+|+.+........+..+. ++ .++++++
T Consensus 176 D~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~ 212 (341)
T TIGR02475 176 DLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS 212 (341)
T ss_pred CEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 5678899998753322222333333 44 3566654
No 434
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.82 E-value=1.8e+02 Score=19.60 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=34.9
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHc-CCceEE
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYE 83 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~-~~~~~e 83 (153)
..|.+++.+-.++....+++...++.+. .+.+++++........ ........++++++ ++.++.
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~---~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG---PDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC---CCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEec
Confidence 5688888888888655555555544442 2467777776532111 11112234556666 555443
No 435
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=29.79 E-value=86 Score=21.94 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=7.4
Q ss_pred hhcCcEEEEEEeC
Q 031782 15 SIHGQCAIIMFDV 27 (153)
Q Consensus 15 ~~~ad~~ilv~d~ 27 (153)
+..||++|++.-.
T Consensus 66 i~~AD~iIi~tP~ 78 (174)
T TIGR03566 66 IESADLLVVGSPV 78 (174)
T ss_pred HHHCCEEEEECCc
Confidence 4456666665444
No 436
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=29.28 E-value=1.5e+02 Score=18.70 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=31.8
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~D 60 (153)
.-+++|..+++-+.....-++.++..-.+.+++...+---+++|...|
T Consensus 31 ~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~id 78 (95)
T PF12327_consen 31 VDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGASID 78 (95)
T ss_dssp S-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEEE-
T ss_pred CChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEEEC
Confidence 557889999988877655688888888888877764444566777666
No 437
>smart00432 MADS MADS domain.
Probab=28.73 E-value=66 Score=18.65 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=16.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCCh
Q 031782 8 VLIILICSIHGQCAIIMFDVTAR 30 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~ 30 (153)
..--.+.+=++++++++|+.++.
T Consensus 30 Ka~Els~Lc~~~v~~iv~sp~g~ 52 (59)
T smart00432 30 KAHELSVLCDAEVALIVFSPTGK 52 (59)
T ss_pred HHHHHhhccCCeEEEEEECCCCC
Confidence 33344556689999999998864
No 438
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=28.33 E-value=58 Score=29.66 Aligned_cols=32 Identities=28% Similarity=0.163 Sum_probs=28.0
Q ss_pred CCceEEecCCCCCCcHHHHHHHHHHHhCCCCC
Q 031782 78 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 109 (153)
Q Consensus 78 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 109 (153)
+++++|||+..+-||+-+|..|+..+....+.
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~ksr~~ 34 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDKSRKK 34 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHhhccc
Confidence 57899999999999999999999999775543
No 439
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.75 E-value=2e+02 Score=19.53 Aligned_cols=81 Identities=7% Similarity=0.028 Sum_probs=46.8
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
++|++.+ +.....+...+.+++..++... .++ .+++|...-.. .....+....+++.|+.-++.+ +...+++
T Consensus 54 ~~d~V~l--S~~~~~~~~~~~~~~~~L~~~~~~~~-~i~vGG~~~~~-~~~~~~~~~~l~~~G~~~vf~~---~~~~~~i 126 (137)
T PRK02261 54 DADAILV--SSLYGHGEIDCRGLREKCIEAGLGDI-LLYVGGNLVVG-KHDFEEVEKKFKEMGFDRVFPP---GTDPEEA 126 (137)
T ss_pred CCCEEEE--cCccccCHHHHHHHHHHHHhcCCCCC-eEEEECCCCCC-ccChHHHHHHHHHcCCCEEECc---CCCHHHH
Confidence 4454444 4444456777788888887763 344 55566554221 1112334456777886544432 4577788
Q ss_pred HHHHHHHHh
Q 031782 96 FLYLARKLA 104 (153)
Q Consensus 96 f~~l~~~i~ 104 (153)
..+|.+.+.
T Consensus 127 ~~~l~~~~~ 135 (137)
T PRK02261 127 IDDLKKDLN 135 (137)
T ss_pred HHHHHHHhc
Confidence 888877653
No 440
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=27.25 E-value=2.5e+02 Score=20.42 Aligned_cols=48 Identities=4% Similarity=-0.018 Sum_probs=29.3
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV 61 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl 61 (153)
+...+..||.+|++.+.+- .++............. +.+ +.+|.|+++-
T Consensus 124 ~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 124 AVTALAAADELLLVVNPEI-SSITDALKTKIVAEKL--GTAILGVVLNRVTR 172 (251)
T ss_pred HHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHhc--CCceEEEEEECCCc
Confidence 4445678999999998864 3444433333222222 344 4688999885
No 441
>PRK06242 flavodoxin; Provisional
Probab=27.01 E-value=1.2e+02 Score=20.39 Aligned_cols=67 Identities=6% Similarity=-0.136 Sum_probs=36.2
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
-+.++|++++...+-...-...+..|+.++... .+.+++++++- ..................|..++
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~-~~k~~~~f~t~-g~~~~~~~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPV-SGKKAFIFSTS-GLPFLKYHKALKKKLKEKGFEIV 106 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhh-cCCeEEEEECC-CCCcchHHHHHHHHHHHCCCEEE
Confidence 356788888876654333344555666655432 36777777764 33221111223445566676554
No 442
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=26.85 E-value=1.2e+02 Score=20.71 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=21.6
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~D 60 (153)
.++..||.+|+|...+-.+.+.-++. ..- ..--+++.||+|
T Consensus 108 ~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~----~~~~~~~~~k~~ 148 (148)
T cd03114 108 DIASMADTTVVVMAPGAGDDIQAIKA---GIM----EIADIVVVNKAD 148 (148)
T ss_pred hHHHhCCEEEEEECCCchhHHHHhhh---hHh----hhcCEEEEeCCC
Confidence 46777787777777663332222111 111 223456778876
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.78 E-value=3e+02 Score=21.16 Aligned_cols=38 Identities=5% Similarity=-0.014 Sum_probs=20.2
Q ss_pred EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcH
Q 031782 52 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 52 ~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 93 (153)
--++.||.|-... .-....++...++++..++ +|++|-
T Consensus 214 ~~~I~TKlDet~~--~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 214 DGIVFTKFDETAS--SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred CEEEEEeecCCCC--ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 3456677774321 1123355666677766665 555554
No 444
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=26.69 E-value=2.3e+02 Score=22.17 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=35.6
Q ss_pred CcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 50 IPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 50 ~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++++.|.||+|. ++.+ ...+|+.=+ .+-+|+...-|++.+++.+-..+.
T Consensus 239 ~~ClYvYnKID~----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 688999999995 3333 345555533 456677788999999999887774
No 445
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=26.67 E-value=2.2e+02 Score=21.69 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=31.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 59 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~ 59 (153)
.....+|.++.+|..-....-..+..-++.+.++. ++.|+.+|-|--
T Consensus 150 ~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 150 RAAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 34458999999999976543344444555555553 578888887654
No 446
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=26.38 E-value=2.3e+02 Score=24.86 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc--eEEecCCCCCCc
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNF 92 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~--~~e~Sa~~~~~v 92 (153)
++--|++|+|+|....---+....|. ...++ ++|.+...||.|.-..........+..+++.+ ++.+ ..|.
T Consensus 125 LrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi----Pig~ 197 (721)
T KOG0465|consen 125 LRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI----PIGS 197 (721)
T ss_pred hhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc----cccc
Confidence 45668888888876532222333454 33444 79999999999965433322233344444322 2222 2333
Q ss_pred HHHHHHHHHHHh
Q 031782 93 EKPFLYLARKLA 104 (153)
Q Consensus 93 ~~lf~~l~~~i~ 104 (153)
+..|.-++..+.
T Consensus 198 e~~f~GvvDlv~ 209 (721)
T KOG0465|consen 198 ESNFKGVVDLVN 209 (721)
T ss_pred cccchhHHhhhh
Confidence 445555555554
No 447
>PRK13660 hypothetical protein; Provisional
Probab=26.37 E-value=1.6e+02 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.590 Sum_probs=6.2
Q ss_pred cCcEEEEEEeCC
Q 031782 17 HGQCAIIMFDVT 28 (153)
Q Consensus 17 ~ad~~ilv~d~~ 28 (153)
++|++|++||..
T Consensus 129 ~sd~~i~~YD~e 140 (182)
T PRK13660 129 HTDGALLVYDEE 140 (182)
T ss_pred ccCeEEEEEcCC
Confidence 455555555544
No 448
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=26.22 E-value=2.6e+02 Score=20.40 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=36.7
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhc------CCCcEEEEeeCCCCCCc--ccChH-HHHHHHHc
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKNR--QVKAK-QVTFHRKK 77 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~------~~~p~vlv~nK~Dl~~~--~v~~~-~~~~~~~~ 77 (153)
+.|++|++-|+.|..+.....+|.+.+.+.. .++|++.|..-=|.... ....+ ...+.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 6899999999998765555555665544442 35777766444476642 22333 34555544
No 449
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=26.21 E-value=3.2e+02 Score=21.60 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 48 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 48 ~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+.|++++..... ++.+....|++.+++.+.+...+..=+..+-..|...+..
T Consensus 81 ~~~P~iIvt~~~~-----~p~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~ 133 (308)
T PRK05428 81 LEPPCIIVTRGLE-----PPPELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLAP 133 (308)
T ss_pred CCCCEEEEECcCC-----CCHHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhh
Confidence 3788887765444 3556778999999999998776655555555555555543
No 450
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.18 E-value=2.5e+02 Score=20.20 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=23.7
Q ss_pred EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 52 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 52 ~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
-=++.+|.|-..+ .-....++...+.++-.+| +|++|+++
T Consensus 143 ~~lIlTKlDet~~--~G~~l~~~~~~~~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 143 DGLILTKLDETAR--LGALLSLAYESGLPISYIT--TGQRVDDL 182 (196)
T ss_dssp CEEEEESTTSSST--THHHHHHHHHHTSEEEEEE--SSSSTTGE
T ss_pred ceEEEEeecCCCC--cccceeHHHHhCCCeEEEE--CCCChhcC
Confidence 3456788884321 1224466777787777766 66666443
No 451
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.86 E-value=2.3e+02 Score=19.52 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=26.9
Q ss_pred cCcEEEEEEeCCChhh----HhhHHHHHHHHHhhcCCCcEEEEeeC
Q 031782 17 HGQCAIIMFDVTARLT----YKNVPTWHRDLCRVCENIPIVLCGNK 58 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s----~~~~~~~~~~i~~~~~~~p~vlv~nK 58 (153)
..|.+++.+-.+|..+ .+.+...+..+++..++.|++++.-.
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~ 102 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecC
Confidence 6788888888876422 23444556666665556778877644
No 452
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=25.34 E-value=1.6e+02 Score=19.29 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 72 TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 72 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
..++..|++++.++.....++..+...|-..
T Consensus 95 ~~l~~agiplir~~~~~~~~~~~l~~~l~~~ 125 (126)
T PF10881_consen 95 RVLKKAGIPLIRISPKDSYSVEELRRDLREA 125 (126)
T ss_pred HHHHHCCCCEEEEeCCCCCCHHHHHHHHHHh
Confidence 5678889999999999999999988887654
No 453
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=25.23 E-value=39 Score=28.13 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=42.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 80 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~ 80 (153)
-+++--|+++.|||.+-.---+.+..|.+.-+ + ++|-....||.|...........++-++.+..
T Consensus 121 rclrvldgavav~dasagve~qtltvwrqadk-~--~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 121 RCLRVLDGAVAVFDASAGVEAQTLTVWRQADK-F--KIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred HHHHHhcCeEEEEeccCCcccceeeeehhccc-c--CCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 35667799999999986444444555754322 2 68999999999976433333344555666654
No 454
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=67 Score=27.52 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.0
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
...++-.|++++|+|+-+.--.+....+.+.+.+ .+.-+++.||.|..
T Consensus 116 TAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 116 TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred hheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhHH
Confidence 3456778999999998763222222222233332 56778889999954
No 455
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=24.99 E-value=2.6e+02 Score=20.90 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=3.5
Q ss_pred CcEEEEEEe
Q 031782 18 GQCAIIMFD 26 (153)
Q Consensus 18 ad~~ilv~d 26 (153)
+|++|+|..
T Consensus 236 ~d~vilV~~ 244 (274)
T TIGR03029 236 ARGTLIVSR 244 (274)
T ss_pred CCeEEEEEE
Confidence 344444333
No 456
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=24.81 E-value=64 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=15.0
Q ss_pred hHhhhhcCcEEEEEEeCCCh
Q 031782 11 ILICSIHGQCAIIMFDVTAR 30 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~ 30 (153)
-.+.+-++++++++|+.++.
T Consensus 33 Els~Lc~~~v~~iv~sp~g~ 52 (59)
T cd00120 33 ELSVLCDAEVAVIVFSPSGK 52 (59)
T ss_pred hheeccCCcEEEEEECCCCC
Confidence 33445589999999998864
No 457
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=24.79 E-value=81 Score=21.12 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=20.7
Q ss_pred CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 18 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
+-.+|+-=|++..+....+..|... .++|++.+++|.+|
T Consensus 47 akLVilA~D~s~~~i~~~~~~lc~~-----~~Vp~~~~~tk~eL 85 (122)
T PRK04175 47 AKLVVIAEDVDPEEIVAHLPLLCEE-----KKIPYVYVPSKKDL 85 (122)
T ss_pred ccEEEEeCCCChHHHHHHHHHHHHH-----cCCCEEEECCHHHH
Confidence 4555555555433222333332221 27888888888665
No 458
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=24.44 E-value=64 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=26.9
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
..+.++|+.-|++..+- ..|+..+-+. -++|+++|.+|.+|
T Consensus 147 kKAkLVIIA~DVsPie~----vk~LpaLCrk-~~VPY~iVktKaeL 187 (263)
T PTZ00222 147 KQARMVVIANNVDPVEL----VLWMPNLCRA-NKIPYAIVKDMARL 187 (263)
T ss_pred CCceEEEEeCCCCHHHH----HHHHHHHHHh-cCCCEEEECCHHHH
Confidence 45788888888875322 2234333333 28999999999876
No 459
>PHA03050 glutaredoxin; Provisional
Probab=24.40 E-value=1.4e+02 Score=19.34 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=5.2
Q ss_pred CCcEEEEeeC
Q 031782 49 NIPIVLCGNK 58 (153)
Q Consensus 49 ~~p~vlv~nK 58 (153)
.+|.|+++.+
T Consensus 69 tVP~IfI~g~ 78 (108)
T PHA03050 69 TVPRIFFGKT 78 (108)
T ss_pred CcCEEEECCE
Confidence 4555555544
No 460
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=24.13 E-value=73 Score=21.33 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 48 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 48 ~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.+.|.+++..-.. ++....+.|++++++.+.++..+
T Consensus 80 ~~~P~iIvt~~~~-----~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 80 YNPPCIIVTRGLE-----PPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp TT-S-EEEETTT--------HHHHHHHHHCT--EEEESS-H
T ss_pred CCCCEEEEECcCC-----CCHHHHHHHHHhCCcEEEcCCcH
Confidence 3788888765543 45667788999999999877543
No 461
>CHL00175 minD septum-site determining protein; Validated
Probab=23.98 E-value=3e+02 Score=20.68 Aligned_cols=49 Identities=14% Similarity=-0.017 Sum_probs=31.4
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
....+..+|.+++|.+.+ ..+.......++.+.... ...+.+|.|+++-
T Consensus 142 ~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~~~~~lvvN~~~~ 190 (281)
T CHL00175 142 FINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-IYNVKLLVNRVRP 190 (281)
T ss_pred HHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-CCceEEEEeccCh
Confidence 345567799999988776 346666655555555432 2345678899874
No 462
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.98 E-value=1.3e+02 Score=22.19 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCceEEecCCCCCCcHHHHHHHH
Q 031782 69 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 100 (153)
Q Consensus 69 ~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 100 (153)
+..+|+++++++++-+|+-+.-=|..+|+.++
T Consensus 80 ef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 80 EFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 45688999999999999877777888887776
No 463
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.81 E-value=4.1e+02 Score=22.14 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcH
Q 031782 53 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 53 vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 93 (153)
=+|.||.|-..+ .-....++...++++..++ +|++|-
T Consensus 381 glI~TKLDET~k--~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 381 GIVFTKFDETAS--SGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred EEEEEcccCCCC--ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 355677774321 1123355666676666655 555543
No 464
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=23.57 E-value=1e+02 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=19.0
Q ss_pred cchhhhhhHhhhhcCcEEEEEEeCCCh
Q 031782 4 SCFNVLIILICSIHGQCAIIMFDVTAR 30 (153)
Q Consensus 4 ~~~~~~~~~~~~~~ad~~ilv~d~~~~ 30 (153)
|.+...---+.+-+++++++||+.+..
T Consensus 26 gl~kKa~ELs~Lc~~~v~~iv~sp~~~ 52 (83)
T cd00266 26 GLFKKASELSTLCGAEVAVIVYSPSGK 52 (83)
T ss_pred hHHHHHHHHHHhhCCcEEEEEECCCCC
Confidence 334444445556689999999999864
No 465
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.42 E-value=1.9e+02 Score=20.80 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=23.9
Q ss_pred hHhhhhcCcEEEEEEeCC---ChhhHh-hHHHHHHHHHhhcCCCcEEEEe
Q 031782 11 ILICSIHGQCAIIMFDVT---ARLTYK-NVPTWHRDLCRVCENIPIVLCG 56 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~---~~~s~~-~~~~~~~~i~~~~~~~p~vlv~ 56 (153)
...++...++-++++|+. +++.|. .+..++..++...++.|+++|-
T Consensus 51 ~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 51 VADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp HHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred HHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 344555555555555552 223333 3345667777666789999885
No 466
>PRK13555 azoreductase; Provisional
Probab=22.87 E-value=1.7e+02 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=24.3
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 45 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~ 45 (153)
..-+..||.+|+++-+=+..-=..++.|+..+..
T Consensus 84 ~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 84 LNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHcCEEEEEcCcccccchHHHHHHHHHHhc
Confidence 3456789999999888764333456778877765
No 467
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=22.80 E-value=3.2e+02 Score=20.24 Aligned_cols=72 Identities=7% Similarity=0.059 Sum_probs=44.7
Q ss_pred hcCcEEEEEEeCCChhh--HhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 16 IHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
.+++-+=+|.+++...+ +..+.+.+..+...+.++++=++.--.+|.+.++ ...-..+...|..|+.+|.-.
T Consensus 86 ~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i-~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 86 NGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEK-VKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred cCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHH-HHHHHHHHHhCCCEEEcCCCC
Confidence 46888889998876543 5555555555555443444445555666643332 224466788899999998553
No 468
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.50 E-value=2e+02 Score=19.20 Aligned_cols=69 Identities=7% Similarity=-0.011 Sum_probs=34.5
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH----hhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC----RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL 79 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~----~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~ 79 (153)
...-+..||++|++-.+-...--..++.+++.+. ....++++.++++=-.... .........+...++.
T Consensus 64 ~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~ 137 (152)
T PF03358_consen 64 LYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGM 137 (152)
T ss_dssp HHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTB
T ss_pred HHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCC
Confidence 3456778999999877654322223334444442 1224677777754433222 1122223344555554
No 469
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=22.35 E-value=2.1e+02 Score=21.00 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=13.6
Q ss_pred cCcEEEEEEeCCChhhH
Q 031782 17 HGQCAIIMFDVTARLTY 33 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~ 33 (153)
++|++|+.-|+++....
T Consensus 41 ~~D~viiaGDl~~~~~~ 57 (232)
T cd07393 41 PEDIVLIPGDISWAMKL 57 (232)
T ss_pred CCCEEEEcCCCccCCCh
Confidence 78999999999865333
No 470
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=22.27 E-value=1.6e+02 Score=23.49 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=29.4
Q ss_pred hcCcEEEEEEe---CCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCC
Q 031782 16 IHGQCAIIMFD---VTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 61 (153)
Q Consensus 16 ~~ad~~ilv~d---~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl 61 (153)
.++|++|+--| ..+ .|...+....+.+...+ .++|++++..-=|.
T Consensus 39 ~~vD~vliAGDlFd~~~-Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~ 87 (390)
T COG0420 39 EKVDFVLIAGDLFDTNN-PSPRALKLFLEALRRLKDAGIPVVVIAGNHDS 87 (390)
T ss_pred ccCCEEEEccccccCCC-CCHHHHHHHHHHHHHhccCCCcEEEecCCCCc
Confidence 36799999544 444 46677777777776665 47898877443343
No 471
>PRK06756 flavodoxin; Provisional
Probab=22.17 E-value=2e+02 Score=19.28 Aligned_cols=10 Identities=10% Similarity=-0.210 Sum_probs=5.0
Q ss_pred hcCcEEEEEE
Q 031782 16 IHGQCAIIMF 25 (153)
Q Consensus 16 ~~ad~~ilv~ 25 (153)
.++|++++..
T Consensus 48 ~~~d~vi~gs 57 (148)
T PRK06756 48 EQYDGIILGA 57 (148)
T ss_pred hcCCeEEEEe
Confidence 3445555544
No 472
>PRK00170 azoreductase; Reviewed
Probab=22.11 E-value=1.5e+02 Score=21.02 Aligned_cols=32 Identities=3% Similarity=-0.116 Sum_probs=22.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC 44 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~ 44 (153)
.-+..||++|+++-+=+-.-=..++.|++.+.
T Consensus 82 ~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 82 EEFLAADKIVIAAPMYNFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHCCEEEEeecccccCCcHHHHHHHHhhe
Confidence 44778999999888765433345677887764
No 473
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=21.50 E-value=1.9e+02 Score=19.83 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=21.9
Q ss_pred hcCcEEEEEEeCCChhh--------HhhHHHHHHHHHhhcCCCcEEEE
Q 031782 16 IHGQCAIIMFDVTARLT--------YKNVPTWHRDLCRVCENIPIVLC 55 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s--------~~~~~~~~~~i~~~~~~~p~vlv 55 (153)
.+.|.+|+.+-.+|... .+.+..++..++. .+.+++++
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~--~~~~vil~ 111 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRA--AGARVVVF 111 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHh--CCCEEEEe
Confidence 47788888887776532 3334445555542 25555554
No 474
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.04 E-value=2.7e+02 Score=19.93 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecC
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISA 86 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa 86 (153)
+.|++++|...-. ......+..++++.++++++.+-.
T Consensus 35 KrPlIivG~ga~~-~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRPLLVVGSLLLD-DEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCcEEEECcCccc-cchHHHHHHHHHHHHCCCEEEccc
Confidence 7899999987632 122233366889999999886543
No 475
>PRK04017 hypothetical protein; Provisional
Probab=21.01 E-value=1.8e+02 Score=19.91 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.3
Q ss_pred hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 31 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 31 ~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
+.|+.+.+|+.++...+..-.+|+|-.|.|.
T Consensus 4 ~~~~~~~e~i~~L~e~s~~g~vIVVEGk~D~ 34 (132)
T PRK04017 4 ENYERFEEIIEELKEFSEAGAPIIVEGKRDV 34 (132)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCccHH
Confidence 4588889999999998755467778888884
No 476
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.59 E-value=1.3e+02 Score=19.90 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
+.|++++|.-.... ....+..++++..+++++.+-.-
T Consensus 12 ~rP~il~G~g~~~~--~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 12 KRPVILAGRGARRS--GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp SSEEEEE-HHHHHT--TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCEEEEEcCCcChh--hHHHHHHHHHHHHCCCEEecCcc
Confidence 78999998765421 22344678999999998776533
No 477
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=20.23 E-value=1.4e+02 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCcEEEEeeCCC--CCCccc-ChHHHHHHHHcCCceEEecCC
Q 031782 49 NIPIVLCGNKVD--VKNRQV-KAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 49 ~~p~vlv~nK~D--l~~~~v-~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..|+++++|+.| +....- ......++...+..++.+||+
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~ 236 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAK 236 (274)
T ss_pred cCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHH
Confidence 479999999988 321110 011233445567778999876
No 478
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=20.05 E-value=1.5e+02 Score=20.73 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=3.4
Q ss_pred cCcEEEEE
Q 031782 17 HGQCAIIM 24 (153)
Q Consensus 17 ~ad~~ilv 24 (153)
.||++|++
T Consensus 65 ~AD~iI~~ 72 (171)
T TIGR03567 65 QADGVVVA 72 (171)
T ss_pred HCCEEEEE
Confidence 34444443
No 479
>PRK09739 hypothetical protein; Provisional
Probab=20.02 E-value=1.9e+02 Score=20.68 Aligned_cols=33 Identities=3% Similarity=-0.073 Sum_probs=23.0
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 45 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~ 45 (153)
.-+..||++|+++-+-+-.-=..++.|++.+..
T Consensus 75 ~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~ 107 (199)
T PRK09739 75 SELLEHDALVFVFPLWWYSFPAMLKGYIDRVWN 107 (199)
T ss_pred HHHHhCCEEEEECchhhhcchHHHHHHHHHHcc
Confidence 446789999999887664333456778877643
No 480
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=20.00 E-value=2.6e+02 Score=18.70 Aligned_cols=46 Identities=9% Similarity=-0.119 Sum_probs=26.6
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 59 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~ 59 (153)
-+...|.+|+...+-...-...+..|++.......+.+++++.+-.
T Consensus 40 ~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~~ 85 (143)
T PF12724_consen 40 DLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSVGG 85 (143)
T ss_pred ccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEEeC
Confidence 4567788888776654433334556666554333456666655443
Done!