Query 031782
Match_columns 153
No_of_seqs 146 out of 1220
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj0_A GTP-binding nuclear pro 99.9 8.6E-23 2.9E-27 149.1 14.6 143 8-150 78-220 (221)
2 4dkx_A RAS-related protein RAB 99.9 3.8E-22 1.3E-26 146.6 12.0 100 8-107 76-178 (216)
3 3cbq_A GTP-binding protein REM 99.8 2.9E-18 9.9E-23 123.3 14.3 99 9-107 88-190 (195)
4 2g3y_A GTP-binding protein GEM 99.8 7.1E-19 2.4E-23 128.6 10.7 98 8-105 102-203 (211)
5 3q85_A GTP-binding protein REM 99.8 3.1E-18 1.1E-22 119.2 12.1 98 8-105 66-167 (169)
6 3q3j_B RHO-related GTP-binding 99.8 2.1E-18 7.3E-23 125.6 10.2 101 8-108 89-206 (214)
7 3dz8_A RAS-related protein RAB 99.8 6.3E-18 2.2E-22 120.5 11.8 100 8-107 86-188 (191)
8 2hup_A RAS-related protein RAB 99.8 8.7E-18 3E-22 121.1 12.0 100 8-107 92-195 (201)
9 2cjw_A GTP-binding protein GEM 99.8 1.3E-17 4.4E-22 119.6 12.5 97 9-105 72-172 (192)
10 3q72_A GTP-binding protein RAD 99.8 7.5E-18 2.6E-22 116.9 10.9 98 8-105 63-164 (166)
11 3kkq_A RAS-related protein M-R 99.8 1.8E-17 6.2E-22 116.9 12.8 98 8-105 80-182 (183)
12 2nzj_A GTP-binding protein REM 99.8 8.6E-18 2.9E-22 117.4 11.0 98 8-105 68-169 (175)
13 1g16_A RAS-related protein SEC 99.8 1.5E-17 5E-22 115.6 12.1 99 8-106 66-166 (170)
14 3reg_A RHO-like small GTPase; 99.8 1.5E-17 5E-22 118.8 12.3 101 7-107 84-190 (194)
15 3t5g_A GTP-binding protein RHE 99.7 1.1E-17 3.8E-22 117.8 11.2 101 8-108 68-172 (181)
16 3tkl_A RAS-related protein RAB 99.7 2.4E-17 8.3E-22 117.3 13.0 101 8-108 79-182 (196)
17 2atx_A Small GTP binding prote 99.7 2.1E-17 7.1E-22 117.9 12.6 97 9-105 81-193 (194)
18 2fu5_C RAS-related protein RAB 99.7 1.1E-17 3.6E-22 118.1 10.9 98 9-106 72-172 (183)
19 3tw8_B RAS-related protein RAB 99.7 2.1E-17 7.2E-22 115.8 11.9 99 8-106 72-172 (181)
20 1x3s_A RAS-related protein RAB 99.7 2.8E-17 9.7E-22 116.7 12.6 100 8-107 78-180 (195)
21 2iwr_A Centaurin gamma 1; ANK 99.7 1.9E-17 6.4E-22 116.4 11.5 94 12-105 67-169 (178)
22 3c5c_A RAS-like protein 12; GD 99.7 1.1E-17 3.7E-22 119.2 10.4 94 12-105 86-186 (187)
23 2hxs_A RAB-26, RAS-related pro 99.7 2.4E-17 8.3E-22 115.5 12.0 99 8-106 70-174 (178)
24 1z0f_A RAB14, member RAS oncog 99.7 3.3E-17 1.1E-21 114.7 12.6 98 8-105 78-178 (179)
25 3ihw_A Centg3; RAS, centaurin, 99.7 1.6E-17 5.4E-22 118.3 11.1 93 14-106 82-181 (184)
26 4djt_A GTP-binding nuclear pro 99.7 4.6E-17 1.6E-21 118.2 13.2 108 9-116 76-186 (218)
27 2a5j_A RAS-related protein RAB 99.7 3.2E-17 1.1E-21 116.8 12.1 98 9-106 85-185 (191)
28 1u8z_A RAS-related protein RAL 99.7 3.2E-17 1.1E-21 113.3 11.8 98 8-105 66-167 (168)
29 2ew1_A RAS-related protein RAB 99.7 3.1E-17 1.1E-21 118.6 12.2 99 8-106 89-190 (201)
30 3t1o_A Gliding protein MGLA; G 99.7 8.3E-18 2.8E-22 119.5 8.9 99 8-106 88-193 (198)
31 1z2a_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 113.6 11.6 97 9-105 69-167 (168)
32 1r2q_A RAS-related protein RAB 99.7 3.9E-17 1.3E-21 113.2 11.7 97 8-104 69-168 (170)
33 2efe_B Small GTP-binding prote 99.7 5.6E-17 1.9E-21 114.0 12.6 99 8-106 75-176 (181)
34 2g6b_A RAS-related protein RAB 99.7 6.2E-17 2.1E-21 113.6 12.5 99 8-106 74-175 (180)
35 2gf9_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 115.4 12.1 97 9-105 86-185 (189)
36 2p5s_A RAS and EF-hand domain 99.7 5E-17 1.7E-21 116.6 12.0 98 8-105 91-197 (199)
37 2ce2_X GTPase HRAS; signaling 99.7 1.1E-16 3.8E-21 110.2 13.4 98 8-105 65-165 (166)
38 4dsu_A GTPase KRAS, isoform 2B 99.7 9.4E-17 3.2E-21 113.4 13.1 99 8-106 66-167 (189)
39 1c1y_A RAS-related protein RAP 99.7 7.9E-17 2.7E-21 111.5 12.4 97 8-104 65-166 (167)
40 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-16 3.7E-21 112.1 13.1 99 8-106 70-175 (177)
41 1zbd_A Rabphilin-3A; G protein 99.7 7.7E-17 2.6E-21 115.6 12.6 99 8-106 71-172 (203)
42 1z0j_A RAB-22, RAS-related pro 99.7 7.2E-17 2.5E-21 112.0 12.0 97 8-104 69-168 (170)
43 2q3h_A RAS homolog gene family 99.7 2.5E-17 8.5E-22 118.1 9.9 98 9-106 83-196 (201)
44 2bme_A RAB4A, RAS-related prot 99.7 3.3E-17 1.1E-21 115.7 10.3 99 8-106 73-174 (186)
45 1ek0_A Protein (GTP-binding pr 99.7 5.3E-17 1.8E-21 112.6 11.1 97 8-104 66-168 (170)
46 1m7b_A RND3/RHOE small GTP-bin 99.7 2.2E-17 7.4E-22 117.1 9.2 98 8-105 69-183 (184)
47 1z08_A RAS-related protein RAB 99.7 3.4E-17 1.2E-21 113.8 9.9 97 9-105 70-169 (170)
48 3cpj_B GTP-binding protein YPT 99.7 4.4E-17 1.5E-21 119.1 10.9 103 8-110 76-181 (223)
49 2il1_A RAB12; G-protein, GDP, 99.7 7.1E-17 2.4E-21 115.3 11.7 98 8-105 89-190 (192)
50 3oes_A GTPase rhebl1; small GT 99.7 2.8E-17 9.4E-22 118.2 9.6 101 8-108 86-190 (201)
51 1z06_A RAS-related protein RAB 99.7 7.1E-17 2.4E-21 114.7 11.6 96 9-104 85-187 (189)
52 2atv_A RERG, RAS-like estrogen 99.7 6E-17 2.1E-21 115.8 11.2 98 8-105 89-191 (196)
53 2bov_A RAla, RAS-related prote 99.7 1.3E-16 4.4E-21 114.4 12.9 99 8-106 76-178 (206)
54 2fn4_A P23, RAS-related protei 99.7 6.1E-17 2.1E-21 113.5 10.9 99 8-106 71-173 (181)
55 2bcg_Y Protein YP2, GTP-bindin 99.7 1.1E-16 3.8E-21 115.2 12.4 100 8-107 71-173 (206)
56 2o52_A RAS-related protein RAB 99.7 8.8E-17 3E-21 115.6 11.8 98 9-106 89-189 (200)
57 2a9k_A RAS-related protein RAL 99.7 1E-16 3.5E-21 112.9 11.8 98 8-105 80-181 (187)
58 3bc1_A RAS-related protein RAB 99.7 1.4E-16 4.8E-21 112.7 12.4 98 8-105 84-185 (195)
59 3cph_A RAS-related protein SEC 99.7 1.4E-16 4.8E-21 114.8 12.5 99 8-106 83-183 (213)
60 3clv_A RAB5 protein, putative; 99.7 2E-16 6.7E-21 112.6 13.1 98 7-105 106-204 (208)
61 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.2E-17 2.1E-21 114.0 10.2 99 9-107 68-182 (186)
62 2j0v_A RAC-like GTP-binding pr 99.7 3.4E-17 1.2E-21 118.4 9.0 99 9-107 72-182 (212)
63 2j1l_A RHO-related GTP-binding 99.7 5.9E-17 2E-21 117.8 10.3 99 9-107 97-211 (214)
64 2fg5_A RAB-22B, RAS-related pr 99.7 8.2E-17 2.8E-21 114.9 10.8 98 8-105 86-186 (192)
65 3bwd_D RAC-like GTP-binding pr 99.7 4.8E-17 1.6E-21 114.4 9.5 98 8-105 70-181 (182)
66 3con_A GTPase NRAS; structural 99.7 1.3E-16 4.6E-21 113.2 11.5 99 8-106 83-184 (190)
67 2oil_A CATX-8, RAS-related pro 99.7 1.4E-16 5E-21 113.4 11.6 98 8-105 88-188 (193)
68 2yc2_C IFT27, small RAB-relate 99.7 7.5E-17 2.6E-21 115.6 10.2 98 8-105 87-192 (208)
69 1gwn_A RHO-related GTP-binding 99.7 4.5E-17 1.5E-21 118.0 8.8 98 8-105 90-204 (205)
70 2f7s_A C25KG, RAS-related prot 99.7 1.1E-16 3.6E-21 116.2 10.5 99 8-106 98-200 (217)
71 2gco_A H9, RHO-related GTP-bin 99.7 2.2E-16 7.5E-21 113.5 11.8 98 8-105 87-200 (201)
72 2y8e_A RAB-protein 6, GH09086P 99.7 1.6E-16 5.6E-21 111.1 10.9 98 8-105 77-177 (179)
73 1vg8_A RAS-related protein RAB 99.7 1.6E-16 5.4E-21 114.1 11.0 98 9-106 72-176 (207)
74 2gf0_A GTP-binding protein DI- 99.7 2.2E-16 7.5E-21 112.6 11.5 99 8-106 70-172 (199)
75 1ky3_A GTP-binding protein YPT 99.7 2.4E-16 8.1E-21 110.5 11.3 97 9-105 73-178 (182)
76 1kao_A RAP2A; GTP-binding prot 99.7 1.3E-16 4.5E-21 110.1 9.8 97 8-104 65-165 (167)
77 2fv8_A H6, RHO-related GTP-bin 99.7 4.3E-16 1.5E-20 112.5 12.1 100 8-107 87-202 (207)
78 2erx_A GTP-binding protein DI- 99.7 2.1E-16 7.2E-21 109.7 10.0 97 8-104 65-166 (172)
79 4bas_A ADP-ribosylation factor 99.7 2.1E-16 7.1E-21 112.7 9.6 101 7-107 76-191 (199)
80 1f6b_A SAR1; gtpases, N-termin 99.7 2.1E-16 7.3E-21 113.6 9.4 94 9-103 84-197 (198)
81 4gzl_A RAS-related C3 botulinu 99.7 1.7E-16 5.9E-21 114.5 8.6 96 8-103 92-203 (204)
82 3l0i_B RAS-related protein RAB 99.7 1.7E-17 5.7E-22 119.1 2.4 98 9-106 97-197 (199)
83 3llu_A RAS-related GTP-binding 99.7 2.6E-16 8.8E-21 112.7 8.4 91 12-103 90-195 (196)
84 1zj6_A ADP-ribosylation factor 99.7 6.3E-16 2.2E-20 109.6 10.2 98 9-106 75-179 (187)
85 1r8s_A ADP-ribosylation factor 99.7 6.2E-16 2.1E-20 106.9 9.9 98 8-105 58-162 (164)
86 1m2o_B GTP-binding protein SAR 99.7 2.9E-16 1E-20 112.1 8.3 93 9-102 82-189 (190)
87 3c5h_A Glucocorticoid receptor 99.7 2.5E-16 8.6E-21 117.8 8.2 87 17-104 162-254 (255)
88 1fzq_A ADP-ribosylation factor 99.7 5.3E-16 1.8E-20 109.9 9.3 98 8-105 74-178 (181)
89 2h57_A ADP-ribosylation factor 99.7 1E-15 3.5E-20 108.8 10.7 97 8-104 81-186 (190)
90 1ksh_A ARF-like protein 2; sma 99.6 9.3E-16 3.2E-20 108.4 10.2 99 8-106 76-181 (186)
91 1upt_A ARL1, ADP-ribosylation 99.6 1.3E-15 4.5E-20 105.8 10.0 99 8-106 65-170 (171)
92 2h17_A ADP-ribosylation factor 99.6 6.1E-16 2.1E-20 109.3 8.1 95 8-102 79-180 (181)
93 2b6h_A ADP-ribosylation factor 99.6 4E-16 1.4E-20 111.6 6.9 97 9-105 88-191 (192)
94 2wkq_A NPH1-1, RAS-related C3 99.6 1.3E-15 4.5E-20 116.7 10.0 98 8-105 217-330 (332)
95 1zd9_A ADP-ribosylation factor 99.6 1.7E-15 5.8E-20 107.7 9.2 98 8-105 81-185 (188)
96 1u0l_A Probable GTPase ENGC; p 99.6 8.1E-16 2.8E-20 117.8 7.3 92 8-102 75-170 (301)
97 2zej_A Dardarin, leucine-rich 99.6 9.7E-16 3.3E-20 108.7 6.7 99 9-107 71-180 (184)
98 1moz_A ARL1, ADP-ribosylation 99.6 2.5E-15 8.6E-20 105.7 7.9 97 9-105 77-180 (183)
99 2x77_A ADP-ribosylation factor 99.6 8.3E-16 2.8E-20 109.1 5.0 98 9-106 81-185 (189)
100 3th5_A RAS-related C3 botulinu 99.4 1E-16 3.5E-21 115.3 0.0 95 9-103 93-203 (204)
101 3r7w_B Gtpase2, GTP-binding pr 99.6 6.6E-16 2.3E-20 119.5 4.4 96 10-106 65-175 (331)
102 2wji_A Ferrous iron transport 99.6 9.2E-15 3.1E-19 101.9 7.7 90 9-103 71-163 (165)
103 3o47_A ADP-ribosylation factor 99.5 2.4E-14 8.3E-19 110.9 8.8 98 8-105 223-327 (329)
104 2qu8_A Putative nucleolar GTP- 99.5 5.7E-14 1.9E-18 102.8 10.3 94 12-105 103-205 (228)
105 3iev_A GTP-binding protein ERA 99.5 1.2E-13 4.1E-18 106.0 11.2 103 3-107 78-184 (308)
106 2fh5_B SR-beta, signal recogni 99.5 2.3E-13 7.7E-18 98.3 11.0 94 9-102 70-213 (214)
107 2f9l_A RAB11B, member RAS onco 99.5 4.6E-13 1.6E-17 95.9 12.1 98 9-106 69-169 (199)
108 3lvq_E ARF-GAP with SH3 domain 99.5 2.1E-13 7.3E-18 110.5 11.5 99 8-106 380-485 (497)
109 1cip_A Protein (guanine nucleo 99.5 1.9E-14 6.4E-19 112.6 4.7 98 8-105 207-344 (353)
110 2yv5_A YJEQ protein; hydrolase 99.5 4.5E-14 1.5E-18 108.2 6.6 92 8-101 70-165 (302)
111 3r7w_A Gtpase1, GTP-binding pr 99.5 1.1E-13 3.7E-18 106.2 8.7 97 8-105 71-181 (307)
112 2dyk_A GTP-binding protein; GT 99.5 1.2E-13 4E-18 94.9 7.3 90 8-103 70-160 (161)
113 2xtz_A Guanine nucleotide-bind 99.5 2E-14 6.8E-19 112.5 3.8 98 8-105 197-345 (354)
114 2cxx_A Probable GTP-binding pr 99.5 8.4E-14 2.9E-18 98.3 6.3 100 8-108 69-187 (190)
115 2gj8_A MNME, tRNA modification 99.4 3E-14 1E-18 100.1 3.2 88 12-105 78-166 (172)
116 1oix_A RAS-related protein RAB 99.4 1.2E-12 4.2E-17 93.3 11.3 96 8-103 92-190 (191)
117 1azs_C GS-alpha; complex (lyas 99.4 6.3E-14 2.1E-18 111.2 4.8 98 8-105 231-385 (402)
118 2wjg_A FEOB, ferrous iron tran 99.4 2.4E-13 8.1E-18 96.0 6.9 94 9-107 75-171 (188)
119 1zcb_A G alpha I/13; GTP-bindi 99.4 1.2E-13 4.1E-18 108.4 3.9 97 9-105 216-353 (362)
120 2e87_A Hypothetical protein PH 99.4 2.4E-12 8.2E-17 100.5 11.0 95 11-105 240-336 (357)
121 1svi_A GTP-binding protein YSX 99.4 2.8E-12 9.7E-17 90.9 9.7 93 9-104 94-194 (195)
122 3qq5_A Small GTP-binding prote 99.4 7.5E-13 2.6E-17 105.7 7.4 98 4-106 100-197 (423)
123 3a1s_A Iron(II) transport prot 99.4 1.3E-12 4.5E-17 97.9 7.9 91 9-104 73-166 (258)
124 3dpu_A RAB family protein; roc 99.4 1.7E-12 5.9E-17 106.3 9.1 96 9-107 113-210 (535)
125 3ohm_A Guanine nucleotide-bind 99.4 3.1E-13 1.1E-17 104.6 3.8 99 8-106 181-319 (327)
126 1lnz_A SPO0B-associated GTP-bi 99.4 3.1E-12 1.1E-16 99.6 9.5 96 10-107 226-332 (342)
127 3pqc_A Probable GTP-binding pr 99.3 3.5E-12 1.2E-16 90.1 8.7 93 8-105 92-194 (195)
128 3b1v_A Ferrous iron uptake tra 99.3 2E-12 7E-17 97.7 7.2 91 9-104 70-163 (272)
129 3iby_A Ferrous iron transport 99.3 8.9E-13 3.1E-17 98.8 4.1 90 8-102 72-164 (256)
130 3i8s_A Ferrous iron transport 99.3 8E-13 2.7E-17 99.8 3.7 95 6-105 72-169 (274)
131 2lkc_A Translation initiation 99.3 3.4E-12 1.2E-16 89.0 6.4 90 10-106 71-172 (178)
132 4fid_A G protein alpha subunit 99.3 1E-12 3.4E-17 102.2 3.2 98 8-105 175-328 (340)
133 3gee_A MNME, tRNA modification 99.3 1.1E-11 3.8E-16 100.3 8.9 95 8-104 303-397 (476)
134 2hjg_A GTP-binding protein ENG 99.3 4.5E-11 1.6E-15 95.6 12.1 92 11-105 251-349 (436)
135 4dcu_A GTP-binding protein ENG 99.3 6.5E-11 2.2E-15 95.2 12.0 97 7-106 267-370 (456)
136 4dhe_A Probable GTP-binding pr 99.2 3E-11 1E-15 87.4 8.6 96 8-106 103-212 (223)
137 3h2y_A GTPase family protein; 99.2 8.3E-11 2.8E-15 92.4 9.2 90 9-103 61-158 (368)
138 1wf3_A GTP-binding protein; GT 99.2 1.5E-11 5E-16 94.2 4.7 98 5-106 74-174 (301)
139 1xzp_A Probable tRNA modificat 99.2 1E-10 3.5E-15 94.8 9.8 89 9-104 315-404 (482)
140 3k53_A Ferrous iron transport 99.2 5.7E-11 1.9E-15 89.3 7.2 93 10-106 72-167 (271)
141 3sjy_A Translation initiation 99.1 2.2E-10 7.5E-15 90.8 10.1 98 7-105 88-192 (403)
142 3l82_B F-box only protein 4; T 99.1 6.2E-11 2.1E-15 86.2 6.0 97 8-105 116-223 (227)
143 1mky_A Probable GTP-binding pr 99.1 1.5E-10 5.2E-15 92.7 8.7 95 7-106 71-167 (439)
144 3cb4_D GTP-binding protein LEP 99.1 2.7E-10 9.2E-15 94.5 10.1 95 9-106 86-183 (599)
145 2ywe_A GTP-binding protein LEP 99.1 3.6E-10 1.2E-14 93.7 9.8 93 10-105 89-184 (600)
146 1nrj_B SR-beta, signal recogni 99.1 6.2E-11 2.1E-15 85.6 4.5 83 9-91 70-170 (218)
147 3geh_A MNME, tRNA modification 99.0 3.1E-10 1.1E-14 91.5 6.4 91 9-106 295-385 (462)
148 3ec1_A YQEH GTPase; atnos1, at 99.0 6.7E-10 2.3E-14 87.2 7.6 90 9-103 63-160 (369)
149 2hjg_A GTP-binding protein ENG 99.0 3.1E-10 1.1E-14 90.7 5.1 93 7-105 72-165 (436)
150 3l2o_B F-box only protein 4; s 99.0 1.2E-09 4.3E-14 82.9 7.8 97 8-105 201-308 (312)
151 2qtf_A Protein HFLX, GTP-bindi 99.0 3.2E-09 1.1E-13 83.3 10.3 95 11-105 251-354 (364)
152 1ega_A Protein (GTP-binding pr 99.0 7.5E-10 2.6E-14 84.6 5.7 96 7-106 78-176 (301)
153 1mky_A Probable GTP-binding pr 98.9 3.8E-09 1.3E-13 84.5 8.7 92 11-105 257-355 (439)
154 3tr5_A RF-3, peptide chain rel 98.9 5.7E-09 2E-13 85.4 9.8 52 9-63 97-148 (528)
155 1wb1_A Translation elongation 98.9 6.1E-09 2.1E-13 84.4 9.8 91 8-104 87-188 (482)
156 1puj_A YLQF, conserved hypothe 98.9 4.3E-09 1.5E-13 79.8 7.9 88 10-104 16-105 (282)
157 3izy_P Translation initiation 98.8 2.1E-09 7.2E-14 88.1 4.0 94 8-104 66-167 (537)
158 1udx_A The GTP-binding protein 98.8 2.4E-08 8.3E-13 79.5 9.8 93 15-108 233-328 (416)
159 1s0u_A EIF-2-gamma, translatio 98.8 4.1E-08 1.4E-12 77.8 10.8 86 15-105 102-198 (408)
160 1jny_A EF-1-alpha, elongation 98.8 9.6E-09 3.3E-13 82.1 6.7 88 9-97 99-205 (435)
161 1d2e_A Elongation factor TU (E 98.7 1E-08 3.5E-13 81.1 5.9 94 9-105 81-195 (397)
162 4dcu_A GTP-binding protein ENG 98.7 1.8E-08 6.1E-13 81.0 7.3 95 5-105 90-185 (456)
163 2aka_B Dynamin-1; fusion prote 98.7 1.1E-08 3.8E-13 77.1 5.5 95 7-103 151-251 (299)
164 1kk1_A EIF2gamma; initiation o 98.7 4.3E-08 1.5E-12 77.7 8.9 87 14-105 103-200 (410)
165 2xtp_A GTPase IMAP family memb 98.7 9.4E-09 3.2E-13 76.3 4.8 98 10-107 98-210 (260)
166 2c78_A Elongation factor TU-A; 98.7 9.8E-09 3.4E-13 81.3 5.1 94 8-104 89-211 (405)
167 1g7s_A Translation initiation 98.7 5.8E-08 2E-12 80.5 9.7 89 10-104 86-217 (594)
168 1zun_B Sulfate adenylate trans 98.7 4.6E-08 1.6E-12 78.1 8.5 85 9-96 119-215 (434)
169 3j2k_7 ERF3, eukaryotic polype 98.7 7.2E-08 2.5E-12 77.2 9.3 88 8-97 109-217 (439)
170 1r5b_A Eukaryotic peptide chai 98.7 6.1E-09 2.1E-13 84.0 3.0 87 10-96 137-243 (467)
171 3p26_A Elongation factor 1 alp 98.7 7.9E-08 2.7E-12 77.8 9.4 88 7-94 124-227 (483)
172 2elf_A Protein translation elo 98.7 4.7E-08 1.6E-12 76.7 7.8 92 9-105 75-180 (370)
173 2j69_A Bacterial dynamin-like 98.6 4.1E-08 1.4E-12 82.8 6.8 96 8-105 191-325 (695)
174 2qag_A Septin-2, protein NEDD5 98.6 9.6E-09 3.3E-13 80.4 1.7 91 13-107 128-235 (361)
175 2dy1_A Elongation factor G; tr 98.6 1.6E-07 5.3E-12 78.9 8.7 51 9-62 89-139 (665)
176 3avx_A Elongation factor TS, e 98.6 1.2E-07 4E-12 83.6 8.0 93 9-104 374-485 (1289)
177 2ged_A SR-beta, signal recogni 98.6 1E-07 3.5E-12 67.1 6.5 54 10-63 107-170 (193)
178 1f60_A Elongation factor EEF1A 98.6 9.9E-08 3.4E-12 76.8 6.4 86 8-95 99-202 (458)
179 1zo1_I IF2, translation initia 98.5 2.3E-08 7.8E-13 81.4 2.5 89 10-101 67-163 (501)
180 3cnl_A YLQF, putative uncharac 98.5 6.1E-08 2.1E-12 72.7 3.9 82 10-101 14-97 (262)
181 2qag_C Septin-7; cell cycle, c 98.5 4E-08 1.4E-12 78.3 2.1 94 9-105 128-227 (418)
182 3t5d_A Septin-7; GTP-binding p 98.5 9.4E-08 3.2E-12 71.7 3.9 84 18-105 116-204 (274)
183 1t9h_A YLOQ, probable GTPase E 98.5 6.6E-08 2.3E-12 74.1 3.1 86 10-97 79-169 (307)
184 3lxx_A GTPase IMAP family memb 98.5 4.8E-07 1.6E-11 66.3 7.5 94 11-106 106-215 (239)
185 3p32_A Probable GTPase RV1496/ 98.4 1.2E-07 4.2E-12 73.8 4.2 85 14-105 189-284 (355)
186 1dar_A EF-G, elongation factor 98.4 8.6E-07 2.9E-11 74.7 9.2 53 8-63 91-143 (691)
187 2wsm_A Hydrogenase expression/ 98.4 2.4E-07 8.4E-12 66.7 5.0 83 16-105 128-214 (221)
188 3izq_1 HBS1P, elongation facto 98.4 1.8E-07 6.3E-12 77.8 4.8 87 8-95 259-362 (611)
189 1jwy_B Dynamin A GTPase domain 98.4 6E-07 2.1E-11 68.1 7.2 100 4-107 154-264 (315)
190 1pui_A ENGB, probable GTP-bind 98.4 1.3E-06 4.4E-11 62.2 7.4 85 16-105 107-199 (210)
191 2qnr_A Septin-2, protein NEDD5 98.3 6.6E-07 2.3E-11 68.2 5.8 83 21-107 130-216 (301)
192 3t34_A Dynamin-related protein 98.3 1.3E-07 4.3E-12 73.7 1.5 93 6-100 161-256 (360)
193 3lxw_A GTPase IMAP family memb 98.3 1.9E-06 6.3E-11 63.8 7.6 88 16-106 104-209 (247)
194 2xex_A Elongation factor G; GT 98.3 4.5E-06 1.5E-10 70.4 10.2 52 9-63 90-141 (693)
195 2rdo_7 EF-G, elongation factor 98.3 5.4E-06 1.9E-10 70.0 10.3 52 9-63 97-148 (704)
196 2rcn_A Probable GTPase ENGC; Y 98.2 3.6E-06 1.2E-10 65.8 8.0 82 15-99 128-213 (358)
197 3mca_A HBS1, elongation factor 98.2 3E-07 1E-11 76.3 2.0 81 11-93 272-371 (592)
198 1yrb_A ATP(GTP)binding protein 98.2 2.3E-06 7.9E-11 63.1 6.6 89 14-105 135-257 (262)
199 2h5e_A Peptide chain release f 98.2 8.1E-06 2.8E-10 66.8 10.2 52 9-63 97-148 (529)
200 2hf9_A Probable hydrogenase ni 98.1 2E-06 6.9E-11 62.0 4.2 57 49-105 164-224 (226)
201 2www_A Methylmalonic aciduria 98.0 1.1E-05 3.7E-10 62.7 7.1 85 13-104 183-278 (349)
202 2p67_A LAO/AO transport system 98.0 9.8E-06 3.4E-10 62.7 6.8 84 14-104 166-260 (341)
203 1wxq_A GTP-binding protein; st 97.9 2.7E-06 9.2E-11 67.3 1.6 46 49-97 214-262 (397)
204 2x2e_A Dynamin-1; nitration, h 97.9 3.3E-06 1.1E-10 65.5 1.6 91 9-101 158-254 (353)
205 3vqt_A RF-3, peptide chain rel 97.7 0.00022 7.6E-09 58.6 9.4 49 12-63 118-166 (548)
206 3zvr_A Dynamin-1; hydrolase, D 97.7 3.1E-05 1.1E-09 65.9 4.3 89 10-102 179-275 (772)
207 2qpt_A EH domain-containing pr 97.5 7.2E-05 2.5E-09 61.5 3.7 54 8-63 179-232 (550)
208 3j25_A Tetracycline resistance 97.3 0.00034 1.1E-08 58.5 5.9 49 12-63 85-133 (638)
209 1h65_A Chloroplast outer envel 97.2 0.00031 1.1E-08 52.2 4.2 48 15-63 117-168 (270)
210 2qm8_A GTPase/ATPase; G protei 97.2 0.00078 2.7E-08 52.0 6.5 84 14-104 165-260 (337)
211 1n0u_A EF-2, elongation factor 97.1 0.00035 1.2E-08 60.1 4.3 51 9-62 113-163 (842)
212 4fn5_A EF-G 1, elongation fact 97.0 0.0041 1.4E-07 52.5 9.7 48 12-62 103-150 (709)
213 2dby_A GTP-binding protein; GD 97.0 0.00086 3E-08 52.4 4.9 47 49-95 201-252 (368)
214 3def_A T7I23.11 protein; chlor 96.9 0.00094 3.2E-08 49.4 4.2 45 17-62 116-164 (262)
215 1jal_A YCHF protein; nucleotid 96.8 0.009 3.1E-07 46.6 9.5 40 49-88 199-240 (363)
216 4a9a_A Ribosome-interacting GT 91.6 0.35 1.2E-05 37.8 5.8 50 11-62 143-195 (376)
217 2j37_W Signal recognition part 91.0 0.29 9.8E-06 39.8 4.9 78 17-102 213-310 (504)
218 3cwq_A Para family chromosome 85.8 5.5 0.00019 27.7 8.3 71 10-82 83-153 (209)
219 4dzz_A Plasmid partitioning pr 82.9 3.8 0.00013 28.0 6.3 71 9-82 89-162 (206)
220 3dm5_A SRP54, signal recogniti 82.3 3.7 0.00013 32.7 6.7 70 17-95 212-281 (443)
221 1j8m_F SRP54, signal recogniti 72.8 10 0.00035 28.2 6.4 71 15-95 210-281 (297)
222 2v3c_C SRP54, signal recogniti 72.3 12 0.0004 29.6 6.9 61 17-85 210-272 (432)
223 3kl4_A SRP54, signal recogniti 72.2 8.1 0.00028 30.6 5.9 68 17-93 211-278 (433)
224 3k9g_A PF-32 protein; ssgcid, 72.2 24 0.00081 25.1 8.1 50 10-60 159-208 (267)
225 1wcv_1 SOJ, segregation protei 70.7 16 0.00056 26.0 7.0 51 11-62 127-182 (257)
226 2qag_B Septin-6, protein NEDD5 68.8 2.5 8.5E-05 33.5 2.2 40 48-87 175-218 (427)
227 2ale_A SNU13, NHP2/L7AE family 65.5 9.9 0.00034 25.0 4.4 75 17-104 48-122 (134)
228 1rj9_A FTSY, signal recognitio 64.7 15 0.00052 27.4 5.8 80 6-94 209-288 (304)
229 2ohf_A Protein OLA1, GTP-bindi 64.3 3 0.0001 32.7 1.9 24 10-33 109-132 (396)
230 3ea0_A ATPase, para family; al 63.6 34 0.0012 23.7 9.2 71 10-84 133-204 (245)
231 3end_A Light-independent proto 62.8 42 0.0014 24.5 9.4 66 12-83 174-242 (307)
232 3sop_A Neuronal-specific septi 59.8 9.3 0.00032 28.0 3.8 43 17-63 111-154 (270)
233 4a9a_A Ribosome-interacting GT 56.5 22 0.00074 27.6 5.5 51 49-104 249-299 (376)
234 1ko7_A HPR kinase/phosphatase; 52.8 16 0.00054 27.7 4.1 50 49-103 80-129 (314)
235 3do6_A Formate--tetrahydrofola 49.9 65 0.0022 26.2 7.3 68 35-104 348-417 (543)
236 1g3q_A MIND ATPase, cell divis 48.9 62 0.0021 22.2 7.6 69 10-82 126-194 (237)
237 2fz5_A Flavodoxin; alpha/beta 47.0 30 0.001 21.6 4.4 68 14-82 43-112 (137)
238 1hyq_A MIND, cell division inh 46.9 72 0.0025 22.4 7.8 69 10-82 125-193 (263)
239 3e70_C DPA, signal recognition 45.7 47 0.0016 25.0 5.8 70 17-95 241-310 (328)
240 2og2_A Putative signal recogni 45.4 1E+02 0.0034 23.6 8.2 81 5-94 264-344 (359)
241 1s2d_A Purine trans deoxyribos 45.4 39 0.0013 22.9 4.8 40 13-56 77-116 (167)
242 3q9l_A Septum site-determining 44.3 48 0.0016 23.2 5.5 51 10-61 128-185 (260)
243 3bfv_A CAPA1, CAPB2, membrane 44.1 33 0.0011 24.9 4.6 47 13-62 210-257 (271)
244 4hs4_A Chromate reductase; tri 44.0 30 0.001 23.9 4.2 47 12-58 68-118 (199)
245 2oze_A ORF delta'; para, walke 43.0 43 0.0015 24.2 5.2 66 12-78 171-241 (298)
246 3kjh_A CO dehydrogenase/acetyl 42.7 60 0.0021 22.3 5.8 49 10-60 146-194 (254)
247 2ph1_A Nucleotide-binding prot 42.3 80 0.0027 22.3 6.4 64 17-83 152-224 (262)
248 1bif_A 6-phosphofructo-2-kinas 41.0 44 0.0015 26.3 5.2 42 12-56 115-156 (469)
249 1tq4_A IIGP1, interferon-induc 40.9 12 0.00041 29.4 1.8 59 49-107 175-255 (413)
250 1rtt_A Conserved hypothetical 37.4 22 0.00076 24.1 2.6 45 14-58 69-117 (193)
251 1t0i_A YLR011WP; FMN binding p 36.9 30 0.001 23.3 3.2 46 12-57 79-124 (191)
252 3svl_A Protein YIEF; E. coli C 36.6 51 0.0018 22.6 4.4 46 12-57 67-116 (193)
253 3jyw_G 60S ribosomal protein L 35.9 33 0.0011 21.8 3.0 40 17-61 41-80 (113)
254 1f8y_A Nucleoside 2-deoxyribos 35.6 40 0.0014 22.6 3.6 41 14-58 75-115 (157)
255 2ark_A Flavodoxin; FMN, struct 35.4 48 0.0016 22.3 4.1 46 13-58 48-97 (188)
256 1vma_A Cell division protein F 34.6 1.1E+02 0.0039 22.6 6.3 70 17-95 222-291 (306)
257 2xzm_U Ribosomal protein L7AE 33.6 28 0.00096 22.5 2.5 13 49-61 67-79 (126)
258 1rli_A Trp repressor binding p 33.5 43 0.0015 22.2 3.6 45 13-57 67-123 (184)
259 5nul_A Flavodoxin; electron tr 33.2 82 0.0028 19.7 4.8 44 14-57 42-87 (138)
260 3la6_A Tyrosine-protein kinase 33.0 63 0.0022 23.6 4.7 48 13-62 220-267 (286)
261 3b9q_A Chloroplast SRP recepto 32.3 1.5E+02 0.0051 21.8 7.8 81 5-94 207-287 (302)
262 1uf3_A Hypothetical protein TT 31.6 81 0.0028 21.2 4.9 43 17-61 32-75 (228)
263 2yvt_A Hypothetical protein AQ 30.9 82 0.0028 21.9 4.9 17 16-32 31-47 (260)
264 3pzx_A Formate--tetrahydrofola 30.8 28 0.00097 28.4 2.5 66 38-105 365-430 (557)
265 3r6w_A FMN-dependent NADH-azor 30.5 56 0.0019 22.4 3.8 32 13-44 83-114 (212)
266 2a5l_A Trp repressor binding p 30.1 58 0.002 21.8 3.8 48 12-59 66-118 (200)
267 1t5b_A Acyl carrier protein ph 29.7 48 0.0016 22.2 3.3 33 12-44 81-113 (201)
268 3ehd_A Uncharacterized conserv 29.7 82 0.0028 21.2 4.4 40 14-57 66-105 (162)
269 3fvw_A Putative NAD(P)H-depend 29.6 57 0.0019 22.2 3.7 70 11-80 61-141 (192)
270 2xj4_A MIPZ; replication, cell 29.6 1.2E+02 0.0042 21.7 5.7 54 9-63 117-192 (286)
271 3ec1_A YQEH GTPase; atnos1, at 29.5 24 0.00081 27.0 1.8 73 16-91 244-317 (369)
272 3gfs_A FMN-dependent NADPH-azo 29.5 45 0.0016 22.1 3.1 70 13-82 59-130 (174)
273 2ffh_A Protein (FFH); SRP54, s 28.8 1.7E+02 0.006 22.8 6.8 80 17-105 210-293 (425)
274 2vzf_A NADH-dependent FMN redu 28.4 37 0.0013 23.1 2.5 45 13-57 65-110 (197)
275 3k1y_A Oxidoreductase; structu 28.3 79 0.0027 21.7 4.3 47 11-57 79-126 (191)
276 3szr_A Interferon-induced GTP- 27.9 48 0.0016 27.2 3.5 54 8-63 174-228 (608)
277 1ls1_A Signal recognition part 27.8 1.4E+02 0.0048 21.8 5.8 69 17-94 210-278 (295)
278 1d4a_A DT-diaphorase, quinone 27.7 83 0.0028 22.8 4.5 45 14-58 90-148 (273)
279 3cio_A ETK, tyrosine-protein k 26.7 1.1E+02 0.0038 22.4 5.1 46 14-62 233-279 (299)
280 1ni3_A YCHF GTPase, YCHF GTP-b 26.5 83 0.0028 24.4 4.5 55 49-103 224-305 (392)
281 1zu4_A FTSY; GTPase, signal re 26.5 1.1E+02 0.0039 22.7 5.1 79 17-105 227-310 (320)
282 2aif_A Ribosomal protein L7A; 26.3 61 0.0021 21.0 3.2 47 49-103 84-130 (135)
283 3rl5_A Metallophosphoesterase 25.9 25 0.00085 26.3 1.3 46 15-61 77-122 (296)
284 2jnb_A NHP2-like protein 1; sp 25.6 16 0.00056 24.3 0.2 48 49-104 93-140 (144)
285 3lcm_A SMU.1420, putative oxid 25.5 85 0.0029 21.3 4.0 34 11-44 67-100 (196)
286 3o85_A Ribosomal protein L7AE; 25.4 1E+02 0.0035 19.6 4.1 71 17-104 47-119 (122)
287 1sqs_A Conserved hypothetical 24.7 78 0.0027 22.2 3.8 70 13-82 75-149 (242)
288 2zay_A Response regulator rece 24.6 1.3E+02 0.0043 18.4 7.2 74 17-104 52-127 (147)
289 3v7e_A Ribosome-associated pro 23.8 28 0.00095 20.5 1.0 13 49-61 53-65 (82)
290 2m1z_A LMO0427 protein; homolo 23.5 52 0.0018 20.6 2.3 21 8-28 48-68 (106)
291 3jte_A Response regulator rece 23.3 1.3E+02 0.0045 18.2 6.9 74 17-104 49-122 (143)
292 1byi_A Dethiobiotin synthase; 23.1 1.8E+02 0.0061 19.6 8.2 59 21-82 141-200 (224)
293 2zki_A 199AA long hypothetical 23.0 95 0.0032 20.7 3.9 47 12-58 65-116 (199)
294 2yhs_A FTSY, cell division pro 22.9 2.1E+02 0.0073 23.0 6.3 68 18-95 412-480 (503)
295 1egw_A MADS box transcription 22.7 65 0.0022 18.9 2.5 19 11-29 33-51 (77)
296 2hpv_A FMN-dependent NADH-azor 22.6 1E+02 0.0035 20.8 4.0 33 13-45 90-122 (208)
297 3ha2_A NADPH-quinone reductase 22.5 1.3E+02 0.0045 20.3 4.5 47 11-57 45-100 (177)
298 3p57_A Myocyte-specific enhanc 21.7 68 0.0023 19.5 2.5 38 9-46 31-71 (90)
299 2f62_A Nucleoside 2-deoxyribos 21.3 1.3E+02 0.0045 20.1 4.2 43 12-58 62-107 (161)
300 3b6i_A Flavoprotein WRBA; flav 21.3 59 0.002 21.7 2.5 47 12-58 63-114 (198)
301 2wkj_A N-acetylneuraminate lya 20.5 1.2E+02 0.004 22.5 4.1 45 17-61 106-154 (303)
302 2q62_A ARSH; alpha/beta, flavo 20.3 72 0.0025 22.9 2.8 48 11-58 92-145 (247)
303 1cp2_A CP2, nitrogenase iron p 20.3 2.3E+02 0.0077 19.7 8.1 63 16-82 139-205 (269)
304 3ez9_A Para; DNA binding, wing 20.1 2.9E+02 0.0098 20.9 6.6 51 10-60 262-321 (403)
No 1
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=8.6e-23 Score=149.14 Aligned_cols=143 Identities=71% Similarity=1.117 Sum_probs=121.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
..++..|++++|++|+|||++++.+|..+..|+..+...+.++|+++|+||+|+.++.+..+...++...++++++|||+
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGG
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCC
Confidence 35678899999999999999999999999999999998877899999999999987665555667888889999999999
Q ss_pred CCCCcHHHHHHHHHHHhCCCCCCcccCCCCCCCccccCHHHHHHHHHHHHHHhCCCCCCCCcc
Q 031782 88 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 150 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 150 (153)
+|.|++++|.+|.+.+...........+...+.+..++....++++..+.++...++|++|+|
T Consensus 158 ~~~gi~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220 (221)
T ss_dssp GTBTTTHHHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred CCCCHHHHHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence 999999999999999999888777777788888888999999999999999999999998876
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.88 E-value=3.8e-22 Score=146.58 Aligned_cols=100 Identities=26% Similarity=0.412 Sum_probs=88.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+++.||++++++++|||+++++||+.+..|+..+.... .++|++|||||+|+.+ +.+..+ +..+++.+++.|++|
T Consensus 76 ~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~ 155 (216)
T 4dkx_A 76 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 155 (216)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEE
Confidence 4678999999999999999999999999999999988764 6899999999999985 677765 789999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.||+++|..|++.+....
T Consensus 156 SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC----
T ss_pred eCCCCcCHHHHHHHHHHHHHhhh
Confidence 99999999999999999986543
No 3
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=123.26 Aligned_cols=99 Identities=24% Similarity=0.299 Sum_probs=87.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.+++.|++++|++|+|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++|
T Consensus 88 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 167 (195)
T 3cbq_A 88 WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIET 167 (195)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEE
Confidence 478899999999999999999999999999999887764 4799999999999975 555544 678898899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.|++++|.+|++.+....
T Consensus 168 Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 168 SAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp BTTTTBSHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999997644
No 4
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=7.1e-19 Score=128.57 Aligned_cols=98 Identities=24% Similarity=0.365 Sum_probs=84.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+++.|+++++++|+|||++++.||..+..|...+... ..++|+++||||+|+.+ +.+..+ ...++..++++|++
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e 181 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE 181 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence 346788999999999999999999999999998887654 24799999999999975 555544 56788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.||+++|.+|++.+..
T Consensus 182 ~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 5
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.78 E-value=3.1e-18 Score=119.18 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=84.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC--CCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++++|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIE 145 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEE
Confidence 34778899999999999999999999999999999887753 799999999999974 555554 66889999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.|++++|.++++.+..
T Consensus 146 ~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 146 TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 6
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.77 E-value=2.1e-18 Score=125.63 Aligned_cols=101 Identities=16% Similarity=0.309 Sum_probs=87.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhh-HHHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..+++.|++++|++|+|||++++.||.. +..|+..+.....++|+++|+||+|+.+ +.+..+ ...
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 4578899999999999999999999998 6899999998877899999999999974 345554 678
Q ss_pred HHHHcCC-ceEEecCCCCCC-cHHHHHHHHHHHhCCCC
Q 031782 73 FHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDPN 108 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~-v~~lf~~l~~~i~~~~~ 108 (153)
+++.+++ +|++|||++|.| |+++|.+|++.+.....
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999998 999999999998 99999999999976543
No 7
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.3e-18 Score=120.52 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=87.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++|
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEA 165 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 3567889999999999999999999999999999998865 5899999999999975 445544 668899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.|++++|.+|++.+.++.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999987643
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.76 E-value=8.7e-18 Score=121.10 Aligned_cols=100 Identities=29% Similarity=0.404 Sum_probs=88.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCC-ceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~-~~~e 83 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++ ++++
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (201)
T 2hup_A 92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIE 171 (201)
T ss_dssp HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEE
Confidence 4567899999999999999999999999999999988775 5799999999999975 455544 6788899998 9999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|||++|.|++++|.+|++.+....
T Consensus 172 ~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 172 TSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999987643
No 9
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.76 E-value=1.3e-17 Score=119.60 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=83.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.+++.|++++|++++|||++++.||..+..|...+.... .++|+++|+||+|+.+ +.+..+ +..++..++++|++|
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~ 151 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIET 151 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEe
Confidence 467889999999999999999999999999988777652 4789999999999974 455544 567788888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.||+++|.++++.+..
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999998853
No 10
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.75 E-value=7.5e-18 Score=116.89 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=77.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..+...|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++++
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 3q72_A 63 RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIE 142 (166)
T ss_dssp ----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEE
Confidence 3467889999999999999999999999999998887653 5799999999999975 555554 56888999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.|++++|.+|.+.+..
T Consensus 143 ~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 143 TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CBGGGTBSHHHHHHHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 11
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=1.8e-17 Score=116.92 Aligned_cols=98 Identities=30% Similarity=0.446 Sum_probs=86.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 80 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEE
Confidence 4567899999999999999999999999999998887642 5789999999999975 555554 67899999999999
Q ss_pred ecCC-CCCCcHHHHHHHHHHHhC
Q 031782 84 ISAK-SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~-~~~~v~~lf~~l~~~i~~ 105 (153)
|||+ +|.|++++|.+|++.+.+
T Consensus 160 ~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp EBCSSSCBSHHHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHHhh
Confidence 9999 999999999999998754
No 12
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=117.40 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=84.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 147 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIE 147 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEE
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEE
Confidence 4567889999999999999999999999999998887652 4799999999999975 555544 56788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.|++++|.+|++.+..
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 13
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=1.5e-17 Score=115.58 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=87.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.++.+..+ ...+++.++++++++|
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEE
Confidence 3467889999999999999999999999999999888775 5789999999999966555554 6688888999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|.+.+.++
T Consensus 146 a~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.75 E-value=1.5e-17 Score=118.77 Aligned_cols=101 Identities=17% Similarity=0.288 Sum_probs=88.1
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCC---cccChH-HHHHHHHcCCc-
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKNLQ- 80 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~---~~v~~~-~~~~~~~~~~~- 80 (153)
...++..|++++|++|+|||++++.+|..+ ..|+..+.....++|+++|+||+|+.+ +.+..+ ...+++.+++.
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 346778899999999999999999999997 789988887777899999999999974 445544 67889999987
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+++|||++|.|++++|.+|++.+..+.
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999997654
No 15
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=1.1e-17 Score=117.82 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=86.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLE 147 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEE
Confidence 3467789999999999999999999999999998887664 4799999999999974 555554 67899999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
+||++|.|++++|.+|++.+.....
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred EecCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987553
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=117.31 Aligned_cols=101 Identities=26% Similarity=0.412 Sum_probs=88.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++|
T Consensus 79 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 79 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 4567889999999999999999999999999999988775 4789999999999975 445544 678899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
||++|.|++++|.+|++.+.....
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999976543
No 17
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=2.1e-17 Score=117.86 Aligned_cols=97 Identities=18% Similarity=0.295 Sum_probs=84.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~~ 73 (153)
.++..|++++|++|+|||++++.+|..+. .|+..+.....++|+++|+||+|+.+. .+..+ ...+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 56788999999999999999999999997 799998887678999999999999752 34443 6688
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++.+++ ++++|||++|.|++++|.+|++.+..
T Consensus 161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 888887 89999999999999999999998763
No 18
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=1.1e-17 Score=118.14 Aligned_cols=98 Identities=26% Similarity=0.456 Sum_probs=80.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++||
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 456789999999999999999999999999999888764 5789999999999975 455544 6788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|.+.+...
T Consensus 152 a~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp C---CCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=115.85 Aligned_cols=99 Identities=25% Similarity=0.407 Sum_probs=87.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.....++|+++|+||+|+.+ +.+..+ ...++...++++++||
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 72 RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 45678899999999999999999999999999999988777899999999999975 444444 6688899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|.+.+...
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 152 AKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 20
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.8e-17 Score=116.74 Aligned_cols=100 Identities=30% Similarity=0.465 Sum_probs=88.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+.++.+..+ ...+++..++++++|
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEA 157 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEe
Confidence 4567899999999999999999999999999999988764 4789999999999976666544 678888999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||+++.|++++|.+|.+.+....
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999997643
No 21
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.74 E-value=1.9e-17 Score=116.35 Aligned_cols=94 Identities=19% Similarity=0.310 Sum_probs=79.3
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCC---CcccChH-HHHHHHHc-CCceE
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYY 82 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~---~~~v~~~-~~~~~~~~-~~~~~ 82 (153)
..|++++|++|+|||++++.||..+..|+..+.... .++|+++|+||+|+. .+.+..+ ...++... +++++
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 67 AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 679999999999999999999999999876655542 478999999999994 3455544 56777776 68999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+|||++|.|++++|.+|++.+..
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998865
No 22
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=119.21 Aligned_cols=94 Identities=20% Similarity=0.307 Sum_probs=83.5
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++||
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 569999999999999999999999999999888763 5899999999999975 555544 6789999999999999
Q ss_pred C-CCCCCcHHHHHHHHHHHhC
Q 031782 86 A-KSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a-~~~~~v~~lf~~l~~~i~~ 105 (153)
| ++|.|++++|..|++.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHHC
T ss_pred ecCccccHHHHHHHHHHHHhh
Confidence 9 8999999999999998854
No 23
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.74 E-value=2.4e-17 Score=115.51 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=85.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCc-EEEEeeCCCCCC-cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p-~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~ 81 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .+.| +++|+||+|+.+ +.+..+ ...+++.+++++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2hxs_A 70 GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSS 149 (178)
T ss_dssp CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcE
Confidence 3567899999999999999999999999999998887753 2455 899999999975 455544 668888899999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++|||++|.|++++|.+|++.+.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 150 HFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999998664
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3.3e-17 Score=114.67 Aligned_cols=98 Identities=30% Similarity=0.453 Sum_probs=85.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.++++++++
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEA 157 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 3567899999999999999999999999999999888765 5799999999999975 445443 678888999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.+|++.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 158 SAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.74 E-value=1.6e-17 Score=118.28 Aligned_cols=93 Identities=19% Similarity=0.395 Sum_probs=81.9
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCC---CcccChH-HHHHHHHcC-CceEEecC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKKN-LQYYEISA 86 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~---~~~v~~~-~~~~~~~~~-~~~~e~Sa 86 (153)
|++++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+. .+.+..+ ...++..++ +.|++|||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 8999999999999999999999999999998763 478999999999995 2455554 678888887 89999999
Q ss_pred CCCCCcHHHHHHHHHHHhCC
Q 031782 87 KSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~~ 106 (153)
++|.|++++|.+|++.+.+.
T Consensus 162 ~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 26
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=4.6e-17 Score=118.15 Aligned_cols=108 Identities=41% Similarity=0.718 Sum_probs=89.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCc-ccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.+...|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .+..+ ...++...++++++||
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 567889999999999999999999999999999988775 35899999999999863 55554 5577888899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCcccCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDPNLHFVESPA 116 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~ 116 (153)
|++|.|++++|.+|.+.+.............
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~ 186 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCTTCCBCSCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcccccccccccC
Confidence 9999999999999999998766554443333
No 27
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.74 E-value=3.2e-17 Score=116.85 Aligned_cols=98 Identities=30% Similarity=0.482 Sum_probs=86.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++..+++++++||
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 457889999999999999999999999999999988764 5799999999999975 455544 6688889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|++.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.74 E-value=3.2e-17 Score=113.35 Aligned_cols=98 Identities=29% Similarity=0.421 Sum_probs=85.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence 3567899999999999999999999999999999888775 3799999999999975 445443 66788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|++++|.+|.+.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.1e-17 Score=118.57 Aligned_cols=99 Identities=29% Similarity=0.500 Sum_probs=86.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++++|
T Consensus 89 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 89 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 4567899999999999999999999999999999988765 4789999999999975 455544 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|++.+...
T Consensus 169 Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 169 SAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 30
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=8.3e-18 Score=119.51 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=84.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCC------ChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-c
Q 031782 8 VLIILICSIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-Q 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~ 80 (153)
..+++.|++++|++|+|||++ +.++|..+..|+..+.....++|+++|+||+|+.+.....+...+++.+++ +
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 167 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP 167 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce
Confidence 457788999999999999999 667888888898887544468999999999999765333446788888898 9
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++|||++|.|++++|.+|++.+.++
T Consensus 168 ~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 168 VLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp EEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=3.3e-17 Score=113.56 Aligned_cols=97 Identities=24% Similarity=0.451 Sum_probs=85.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEecC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISA 86 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sa 86 (153)
.++..|++++|++++|||++++.++..+..|+..+.....+.|+++|+||+|+.+ +.+..+ ...+++..+++++++||
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 4678899999999999999999999999999998887766899999999999975 445444 66788889999999999
Q ss_pred CCCCCcHHHHHHHHHHHhC
Q 031782 87 KSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~ 105 (153)
++|.|++++|.+|.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=3.9e-17 Score=113.24 Aligned_cols=97 Identities=30% Similarity=0.504 Sum_probs=84.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 4567889999999999999999999999999998888764 5799999999999975 444443 667888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||++|.|++++|.+|++.+.
T Consensus 149 Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTSC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 33
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=5.6e-17 Score=113.95 Aligned_cols=99 Identities=29% Similarity=0.452 Sum_probs=85.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.++++++++
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMET 154 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999888775 4789999999999975 445444 668888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|++.+...
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC--
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999887543
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=6.2e-17 Score=113.62 Aligned_cols=99 Identities=23% Similarity=0.454 Sum_probs=83.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++|
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMET 153 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 3467889999999999999999999999999999888765 5799999999999985 445544 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|.+.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=5.3e-17 Score=115.41 Aligned_cols=97 Identities=23% Similarity=0.406 Sum_probs=85.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.++++++++|
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEAS 165 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 467889999999999999999999999999999988764 5799999999999975 445444 6788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|++++|.+|++.+.+
T Consensus 166 a~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 36
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=5e-17 Score=116.61 Aligned_cols=98 Identities=24% Similarity=0.379 Sum_probs=83.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCC-------CcccChH-HHHHHHHcC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-------NRQVKAK-QVTFHRKKN 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~-------~~~v~~~-~~~~~~~~~ 78 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+. .+.+..+ ...++...+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~ 170 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG 170 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence 3467889999999999999999999999999998887764 479999999999995 2445444 668888899
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++++|||++|.|++++|.+|++.+.+
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998864
No 37
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=1.1e-16 Score=110.22 Aligned_cols=98 Identities=23% Similarity=0.433 Sum_probs=86.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.++.+..+ ...+++.++++++++
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEE
T ss_pred hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEe
Confidence 3467789999999999999999999999999999888765 3799999999999987555544 668888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.+|.+.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998854
No 38
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=9.4e-17 Score=113.38 Aligned_cols=99 Identities=23% Similarity=0.424 Sum_probs=87.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.++.+..+ ...++..++++++++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIET 145 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 4577899999999999999999999999999998888754 4799999999999987666555 678899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|.+.+...
T Consensus 146 Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998653
No 39
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=7.9e-17 Score=111.53 Aligned_cols=97 Identities=28% Similarity=0.461 Sum_probs=83.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHc-CCceE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYY 82 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~-~~~~~ 82 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.+ +++++
T Consensus 65 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1c1y_A 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL 144 (167)
T ss_dssp TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEE
Confidence 3567899999999999999999999999999998887753 5899999999999975 444444 66788887 78999
Q ss_pred EecCCCCCCcHHHHHHHHHHHh
Q 031782 83 EISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++||++|.|++++|.+|.+.+.
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 145 ESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHT
T ss_pred EecCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998874
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.72 E-value=1.1e-16 Score=112.08 Aligned_cols=99 Identities=24% Similarity=0.491 Sum_probs=85.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCCcccChH-HHHHHH-HcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~-~~~~~ 80 (153)
..++..|++++|++++|||++++.++..+..|+..+.... .++|+++|+||+|+.++.+..+ ...+++ ..+++
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 149 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP 149 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC
T ss_pred hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce
Confidence 3467789999999999999999999999999998887653 4789999999999986555544 567777 55689
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++|||++|.|++++|.+|.+.+.+.
T Consensus 150 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 150 YFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998753
No 41
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=7.7e-17 Score=115.65 Aligned_cols=99 Identities=23% Similarity=0.407 Sum_probs=86.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++.+++++++|
T Consensus 71 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
T 1zbd_A 71 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 150 (203)
T ss_dssp HHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEEC
T ss_pred cchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEE
Confidence 3467889999999999999999999999999999988765 5799999999999975 455544 668888999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|.+.+.++
T Consensus 151 Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 151 SAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp BTTTTBSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=7.2e-17 Score=112.02 Aligned_cols=97 Identities=24% Similarity=0.443 Sum_probs=85.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||++++.++..+..|+..+.... ...|+++|+||+|+.+ +.+..+ ...++...+++++++
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999888763 5789999999999975 455444 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHh
Q 031782 85 SAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~ 104 (153)
||++|.|++++|.+|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998774
No 43
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=118.07 Aligned_cols=98 Identities=19% Similarity=0.350 Sum_probs=84.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~~ 73 (153)
.++..|++++|++|+|||++++.+|..+. .|+..+.....++|+++|+||+|+.+ +.+..+ ...+
T Consensus 83 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (201)
T 2q3h_A 83 KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLL 162 (201)
T ss_dssp SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHH
Confidence 45678999999999999999999999997 79998888767899999999999964 234443 6678
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+..++. ++++|||++|.|++++|.+|++.+...
T Consensus 163 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 163 AEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 888886 899999999999999999999988653
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.72 E-value=3.3e-17 Score=115.71 Aligned_cols=99 Identities=30% Similarity=0.491 Sum_probs=86.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...++++++|
T Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 2bme_A 73 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLET 152 (186)
T ss_dssp HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEe
Confidence 3467889999999999999999999999999998887764 5799999999999974 455543 668888999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.++++.+...
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=5.3e-17 Score=112.56 Aligned_cols=97 Identities=27% Similarity=0.457 Sum_probs=84.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC----cccChH-HHHHHHHcCCce
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQY 81 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~----~~v~~~-~~~~~~~~~~~~ 81 (153)
..++..|++++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++..+++++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEE
Confidence 4567899999999999999999999999999998888764 5799999999999974 344444 567888889999
Q ss_pred EEecCCCCCCcHHHHHHHHHHHh
Q 031782 82 YEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+++||++|.|++++|.+|.+.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987764
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.72 E-value=2.2e-17 Score=117.07 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=84.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..++..|++++|++|+|||++++.+|..+ ..|+..+.....+.|+++|+||+|+.+ +.+..+ ...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 34678899999999999999999999998 789988888767899999999999973 335544 667
Q ss_pred HHHHcC-CceEEecCC-CCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~-~~~~e~Sa~-~~~~v~~lf~~l~~~i~~ 105 (153)
+++.++ .+|++|||+ ++.|++++|..+++.+.+
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 888887 789999999 689999999999998865
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=3.4e-17 Score=113.82 Aligned_cols=97 Identities=25% Similarity=0.466 Sum_probs=82.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.+...|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...+++..+++++++|
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 456788999999999999999999999999998887654 4789999999999975 455544 6788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|++++|.+|.+.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 150 AKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 48
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.4e-17 Score=119.07 Aligned_cols=103 Identities=26% Similarity=0.391 Sum_probs=84.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..++++++++
T Consensus 76 ~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 76 RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp TCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 3467889999999999999999999999999999988764 4789999999999975 455544 668888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCCCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDPNLH 110 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~~~~ 110 (153)
||++|.|++++|.+|++.+.......
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTTCC---
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999998765433
No 49
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=7.1e-17 Score=115.33 Aligned_cols=98 Identities=24% Similarity=0.496 Sum_probs=84.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHc-CCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e 83 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.. ++++++
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 168 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEE
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEE
Confidence 4567899999999999999999999999999998887765 4799999999999975 455544 56777774 789999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.|++++|.+|.+.+.+
T Consensus 169 ~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 169 ASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 50
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=118.16 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=85.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..+++++++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 3467889999999999999999999999999999887763 4789999999999975 555544 67889999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
|||++|.|++++|.+|.+.+.+...
T Consensus 166 ~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 166 SSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred EeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999976543
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.72 E-value=7.1e-17 Score=114.74 Aligned_cols=96 Identities=25% Similarity=0.454 Sum_probs=82.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++..+++++++|
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 164 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET 164 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEC
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEE
Confidence 678899999999999999999999999999999988763 5799999999999975 455544 668888899999999
Q ss_pred cCCCC---CCcHHHHHHHHHHHh
Q 031782 85 SAKSN---YNFEKPFLYLARKLA 104 (153)
Q Consensus 85 Sa~~~---~~v~~lf~~l~~~i~ 104 (153)
||+++ .|++++|.+|++.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999988774
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6e-17 Score=115.84 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=86.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 168 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYE 168 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEE
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEE
Confidence 4577899999999999999999999999999998887753 5899999999999975 455544 66888888999999
Q ss_pred ecCCCCC-CcHHHHHHHHHHHhC
Q 031782 84 ISAKSNY-NFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~-~v~~lf~~l~~~i~~ 105 (153)
|||++|. |++++|.+|++.+.+
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999 999999999998864
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=114.37 Aligned_cols=99 Identities=28% Similarity=0.418 Sum_probs=86.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEE
Confidence 3567899999999999999999999999999999988775 3799999999999975 445544 66788889999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||++|.|++++|.+|++.+...
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999998653
No 54
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.72 E-value=6.1e-17 Score=113.47 Aligned_cols=99 Identities=26% Similarity=0.433 Sum_probs=85.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++++
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 71 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEE
Confidence 3567889999999999999999999999999998885542 4789999999999975 455544 66788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||++|.|++++|.+|.+.+.+.
T Consensus 151 ~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998654
No 55
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.71 E-value=1.1e-16 Score=115.17 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=87.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++...+++++++
T Consensus 71 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 71 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp TCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 3467889999999999999999999999999999888764 5799999999999975 455544 667888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
||++|.|++++|.+|.+.+....
T Consensus 151 Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999997654
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=8.8e-17 Score=115.63 Aligned_cols=98 Identities=30% Similarity=0.507 Sum_probs=85.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e~S 85 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+.. +...++...++++++||
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 168 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETS 168 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 457789999999999999999999999999998887764 5799999999999975 44544 36678889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|++.+...
T Consensus 169 A~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 169 ALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=1e-16 Score=112.89 Aligned_cols=98 Identities=29% Similarity=0.423 Sum_probs=85.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC--CCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...+++.+++++++
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence 35678899999999999999999999999999998887753 799999999999975 445444 66788899999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||+++.|++++|.+|.+.+..
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 160 TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.71 E-value=1.4e-16 Score=112.71 Aligned_cols=98 Identities=28% Similarity=0.412 Sum_probs=86.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 4567889999999999999999999999999999988765 4899999999999975 445444 66788889999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
|||++|.|++++|.+|.+.+.+
T Consensus 164 ~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 164 TSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=1.4e-16 Score=114.83 Aligned_cols=99 Identities=24% Similarity=0.403 Sum_probs=86.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEec
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+..+.+..+ ...++..+++++++||
T Consensus 83 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 162 (213)
T 3cph_A 83 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 162 (213)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 3457889999999999999999999999999998888765 3789999999999965555544 6678888899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|.+.+...
T Consensus 163 a~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=2e-16 Score=112.57 Aligned_cols=98 Identities=28% Similarity=0.409 Sum_probs=85.0
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEec
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
...++..|++++|++|+|||++++.++..+..|+..+.... +.|+++|+||+|+..+.+..+ ...+++..++++++||
T Consensus 106 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~S 184 (208)
T 3clv_A 106 YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184 (208)
T ss_dssp CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEe
Confidence 34578899999999999999999999999999999988765 499999999999544555544 6788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|++++|.+|.+.+.+
T Consensus 185 a~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 185 AKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988864
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=6.2e-17 Score=114.04 Aligned_cols=99 Identities=20% Similarity=0.409 Sum_probs=84.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~~ 73 (153)
.++..|++++|++++|||++++.+|..+. .|+..+.....+.|+++|+||+|+.+. .+..+ ...+
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 46678999999999999999999999997 799888887668999999999998642 33433 5678
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++..+. ++++|||++|.|++++|.+|.+.+....
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 888886 8999999999999999999999997543
No 62
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.71 E-value=3.4e-17 Score=118.37 Aligned_cols=99 Identities=22% Similarity=0.422 Sum_probs=83.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-c--------cCh-HHHHHHHHc
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q--------VKA-KQVTFHRKK 77 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~--------v~~-~~~~~~~~~ 77 (153)
.++..|++++|++|+|||++++.+|..+. .|+..+.....+.|+++|+||+|+.+. . +.. +...++..+
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 46678999999999999999999999987 799998887678999999999998652 2 233 366788888
Q ss_pred CC-ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 78 NL-QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 78 ~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+. ++++|||++|.|++++|.+|++.+....
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 85 8999999999999999999999998754
No 63
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=117.75 Aligned_cols=99 Identities=21% Similarity=0.359 Sum_probs=78.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~~ 73 (153)
.++..|++++|++|+|||++++.+|..+. .|+..+.....++|+++|+||+|+... .+..+ ...+
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 46678999999999999999999999996 799998887778999999999999752 33433 5678
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++..+. ++++|||++|.|++++|.+|++.+.+..
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 888887 8999999999999999999999987543
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=8.2e-17 Score=114.91 Aligned_cols=98 Identities=24% Similarity=0.388 Sum_probs=85.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...+++..++++++|
T Consensus 86 ~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 165 (192)
T 2fg5_A 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVET 165 (192)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEEC
T ss_pred HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 4567889999999999999999999999999999988775 4799999999999975 455544 678888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.+|.+.+.+
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 166 SAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 65
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.71 E-value=4.8e-17 Score=114.37 Aligned_cols=98 Identities=23% Similarity=0.378 Sum_probs=83.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-c----------cCh-HHHHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q----------VKA-KQVTFH 74 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~----------v~~-~~~~~~ 74 (153)
..++..|++++|++++|||++++.+|..+. .|+..+.....+.|+++|+||+|+.+. . +.. +...++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 356788999999999999999999999997 799988887668999999999998642 2 233 356788
Q ss_pred HHcCC-ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 75 RKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 75 ~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+.++. ++++|||++|.|++++|.+|.+.+..
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 88886 89999999999999999999998753
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=1.3e-16 Score=113.18 Aligned_cols=99 Identities=22% Similarity=0.396 Sum_probs=81.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++++|||+++..+|..+..|+..+.... .++|+++|+||+|+..+.+..+ ...+++.+++++++|
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIET 162 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEE
Confidence 3466789999999999999999999999999998887764 3799999999999987555544 678888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|++++|.+|.+.+.+.
T Consensus 163 Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 163 SAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 67
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=113.37 Aligned_cols=98 Identities=27% Similarity=0.396 Sum_probs=85.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++...++++++|
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 3567889999999999999999999999999999887764 5789999999999975 444443 667888899999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.+|.+.+.+
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.70 E-value=7.5e-17 Score=115.62 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=76.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC----CCcEEEEeeCCCCCC--cccChH-HHHHHHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVKAK-QVTFHRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~p~vlv~nK~Dl~~--~~v~~~-~~~~~~~~~~~ 80 (153)
..++..|++++|++|+|||++++.+|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...+++.++++
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~ 166 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD 166 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE
Confidence 35678899999999999999999999999999999987643 789999999999975 455544 67889999999
Q ss_pred eEEecCCC-CCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKS-NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~-~~~v~~lf~~l~~~i~~ 105 (153)
+++|||++ |.|++++|.+|.+.+..
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp EEECCC-------CHHHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999 99999999999998854
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.70 E-value=4.5e-17 Score=118.00 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=84.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..++..|++++|++|+|||++++.+|..+ ..|+..+.....+.|+++|+||+|+.+ +.+..+ ...
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 34678899999999999999999999998 789998888767899999999999963 334444 668
Q ss_pred HHHHcC-CceEEecCC-CCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~-~~~~e~Sa~-~~~~v~~lf~~l~~~i~~ 105 (153)
+++.++ +.|++|||+ ++.|++++|..+++.+.+
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 888887 789999999 689999999999998764
No 70
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.70 E-value=1.1e-16 Score=116.17 Aligned_cols=99 Identities=28% Similarity=0.394 Sum_probs=85.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence 3567889999999999999999999999999998877654 5799999999999975 455444 67888999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
|||++|.|++++|.+|.+.+.+.
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988653
No 71
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.70 E-value=2.2e-16 Score=113.53 Aligned_cols=98 Identities=20% Similarity=0.373 Sum_probs=83.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~ 72 (153)
..++..|++++|++|+|||++++.+|..+ ..|+..+.....+.|+++|+||+|+.+. .+..+ ...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 45677899999999999999999999999 6898888877678999999999999752 23433 567
Q ss_pred HHHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++..+. ++++|||++|.|++++|.+|.+.+.+
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8888887 89999999999999999999998754
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.70 E-value=1.6e-16 Score=111.07 Aligned_cols=98 Identities=27% Similarity=0.442 Sum_probs=84.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+...|++++|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 156 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEE
Confidence 4567889999999999999999999999999998887764 4799999999999975 445444 667888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhC
Q 031782 85 SAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
||++|.|++++|.+|.+.+.+
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987643
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=1.6e-16 Score=114.09 Aligned_cols=98 Identities=35% Similarity=0.588 Sum_probs=83.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCCcccChH-HHHHHH-HcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~-~~~~~~ 81 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++. ..++++
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCE
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceE
Confidence 456789999999999999999999999999998887653 3789999999999986555544 556776 567899
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++||++|.|++++|.+|.+.+...
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.2e-16 Score=112.57 Aligned_cols=99 Identities=24% Similarity=0.377 Sum_probs=85.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.++.+..+ ...++..+++++++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (199)
T 2gf0_A 70 PAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFME 149 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEE
Confidence 3567889999999999999999999999998887776643 3789999999999987655544 66788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||++|.|++++|.+|.+.+...
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 150 TSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp CBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EecCCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999987553
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=2.4e-16 Score=110.53 Aligned_cols=97 Identities=23% Similarity=0.454 Sum_probs=79.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCC--cccChH-HHHHHH-HcCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNL 79 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~--~~v~~~-~~~~~~-~~~~ 79 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.. +.+..+ ...++. ..+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~ 152 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI 152 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSC
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCC
Confidence 456789999999999999999999999999998887653 4789999999999953 334444 567777 4568
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++++|||++|.|++++|.+|.+.+.+
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 153 PLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 76
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=1.3e-16 Score=110.12 Aligned_cols=97 Identities=23% Similarity=0.423 Sum_probs=84.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e 83 (153)
..++..|++++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.+..+ ...++..+++++++
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFME 144 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEE
Confidence 3467889999999999999999999999999998887764 4799999999999874 455444 66788888999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHh
Q 031782 84 ISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
|||++|.|++++|.+|.+.+.
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999998874
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=4.3e-16 Score=112.46 Aligned_cols=100 Identities=20% Similarity=0.341 Sum_probs=84.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~~-~~~ 72 (153)
..++..|++++|++|+|||++++.+|..+ ..|+..+.....+.|+++|+||+|+.+. .+..+ ...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 34677899999999999999999999998 6798888877678999999999999642 23333 567
Q ss_pred HHHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 73 FHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++...+. .+++|||++|.|++++|.+|.+.+....
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 8888887 8999999999999999999999987643
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.1e-16 Score=109.71 Aligned_cols=97 Identities=26% Similarity=0.399 Sum_probs=82.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~ 82 (153)
..+...|++++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.+... ...++..++++++
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 3567889999999999999999999999999988877653 4799999999999975 445543 5678888899999
Q ss_pred EecCCCCCCcHHHHHHHHHHHh
Q 031782 83 EISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++||++|.|++++|.+|.+.+.
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EecCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999998664
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=2.1e-16 Score=112.69 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=80.6
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---------CCCcEEEEeeCCCCCCcccChH-HHH----
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAK-QVT---- 72 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---------~~~p~vlv~nK~Dl~~~~v~~~-~~~---- 72 (153)
...++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+ ...
T Consensus 76 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 155 (199)
T 4bas_A 76 FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT 155 (199)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch
Confidence 34577889999999999999999999999999988876542 2789999999999976422222 111
Q ss_pred -HHHHcCCceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 73 -FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 73 -~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
+++..++.+++|||++|.||+++|.+|++.+....
T Consensus 156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 156 TLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp HHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred hhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 12446788999999999999999999999987643
No 80
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.67 E-value=2.1e-16 Score=113.61 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=76.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChH-HHHHHHH---------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRK--------- 76 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~--------- 76 (153)
.+++.|++++|++++|||++++++|..+..|+..+... ..++|+++|+||+|+.+ .+..+ ...++..
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccc
Confidence 46788999999999999999999999999999888754 25799999999999975 33333 3444332
Q ss_pred --------cCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 77 --------KNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 77 --------~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
.++++++|||++|.|++++|.+|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 245799999999999999999998643
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.67 E-value=1.7e-16 Score=114.50 Aligned_cols=96 Identities=20% Similarity=0.392 Sum_probs=82.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCcc-------------cChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-------------v~~~-~~~ 72 (153)
..++..|++++|++|+|||++++.+|..+. .|+..+.....+.|+++|+||+|+.+.. +..+ ...
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 456788999999999999999999999997 7998888877789999999999986521 3333 567
Q ss_pred HHHHcCC-ceEEecCCCCCCcHHHHHHHHHHH
Q 031782 73 FHRKKNL-QYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+++..+. ++++|||++|.|++++|.+|.+.+
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 8888885 599999999999999999998765
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=1.7e-17 Score=119.14 Aligned_cols=98 Identities=27% Similarity=0.438 Sum_probs=76.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccCh-HHHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~~~~~~e~S 85 (153)
.++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+.. +...++..+++++++||
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEE
Confidence 456789999999999999999999999999999987764 4799999999999975 44443 36678889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|++++|.+|++.+.++
T Consensus 177 A~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp C---HHHHHHHHHHTTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999998877543
No 83
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.66 E-value=2.6e-16 Score=112.74 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=75.5
Q ss_pred HhhhhcCcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC--------cccChH-HHHHHH----H
Q 031782 12 LICSIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAK-QVTFHR----K 76 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~--------~~v~~~-~~~~~~----~ 76 (153)
..||+++|++|+|||++++ +++..+..|+..+.....++|+++|+||+|+.+ +.+..+ ...+++ .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 8999999999999999997 777888888888765556899999999999864 222222 446677 6
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+++.|++|||++ .||+++|..+++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 678999999999 99999999999876
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.3e-16 Score=109.63 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=78.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHH-----HHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~-----~~~~~~~ 81 (153)
.++..|++++|++|+|||++++++|..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...++++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEE
Confidence 46788999999999999999999999999999888765 2589999999999997532222222222 2345689
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++|||++|.|++++|.+|++.+...
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988554
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.66 E-value=6.2e-16 Score=106.93 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=75.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHH-HHH----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~-~~~----~~~~~~~ 80 (153)
..++..|++++|++++|||++++++|..+..|+..+.... .+.|+++|+||+|+.+.....+. ..+ +...+++
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 137 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY 137 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEE
Confidence 3567889999999999999999999999999988876542 57999999999999753221221 111 1223457
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++|||++|.|++++|.+|.+.+.+
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 138 IQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEcccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.66 E-value=2.9e-16 Score=112.11 Aligned_cols=93 Identities=14% Similarity=0.211 Sum_probs=75.0
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChH-HHHHHH----------
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHR---------- 75 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~---------- 75 (153)
.++..|++++|++++|||++++.+|..+..|+..+... ..+.|+++|+||+|+.+ .+..+ ..+...
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRI 160 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---C
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccc
Confidence 46788999999999999999999999999999888654 25799999999999976 23332 333322
Q ss_pred --HcCCceEEecCCCCCCcHHHHHHHHHH
Q 031782 76 --KKNLQYYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 76 --~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
..++++++|||++|.|++++|.+|++.
T Consensus 161 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 134679999999999999999999754
No 87
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=117.85 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=72.5
Q ss_pred cCcEEEEEEeCCCh--hhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCC-cccChHHHHHHHH-cCCceEEecCCCCC
Q 031782 17 HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRK-KNLQYYEISAKSNY 90 (153)
Q Consensus 17 ~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~-~~~~~~e~Sa~~~~ 90 (153)
+||++|+|||++++ .||..+..|+..+... ..++|+++|+||+|+.+ +.+ .+...++.. .++++++|||++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCC
Confidence 89999999999998 8999999999888765 25799999999999965 333 345567766 47899999999999
Q ss_pred CcHHHHHHHHHHHh
Q 031782 91 NFEKPFLYLARKLA 104 (153)
Q Consensus 91 ~v~~lf~~l~~~i~ 104 (153)
|++++|.+|++.+.
T Consensus 241 gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 241 NVDLAFSTLVQLID 254 (255)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998774
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=5.3e-16 Score=109.86 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=75.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHH-H----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~-~----~~~~~~~ 80 (153)
..++..|++++|++++|||++++.+|..+..|+..+... ..+.|+++|+||+|+.+.....+..+ + +...+++
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQ 153 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceE
Confidence 346788999999999999999999999999998877553 25799999999999975322122111 1 1123457
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++|||++|.|++++|.+|++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 154 IQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTC--
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=108.79 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=77.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc----CCCcEEEEeeCCCCCCcccChHHHHHHH-----HcC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKN 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~p~vlv~nK~Dl~~~~v~~~~~~~~~-----~~~ 78 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+...+.. ..+
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc
Confidence 3567889999999999999999999999999988877653 4799999999999975322223333332 235
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+++++|||++|.|++++|.+|.+.+.
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999998874
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=9.3e-16 Score=108.43 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=78.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHH-----HHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~-----~~~~~~ 80 (153)
..++..|++++|++++|||++++.+|..+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++
T Consensus 76 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 76 RSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp HTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE
Confidence 346788999999999999999999999999998887654 2579999999999997532222222211 134568
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++|||++|.|++++|.+|.+.+.++
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.64 E-value=1.3e-15 Score=105.81 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=78.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChH-HHHH----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTF----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~-~~~~----~~~~~~~ 80 (153)
..++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+.....+ ...+ +...+++
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE
T ss_pred hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE
Confidence 3567889999999999999999999999999888776542 5899999999999975322122 1112 2334568
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++|||++|.|++++|.+|.+.+.++
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 99999999999999999999988653
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.64 E-value=6.1e-16 Score=109.29 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=74.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHHHHH-----HHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~-----~~~~~~ 80 (153)
..++..|++++|++|+|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+..... ...+++
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 158 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 158 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE
Confidence 346788999999999999999999999999998887764 2589999999999997532222222221 223567
Q ss_pred eEEecCCCCCCcHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
+++|||++|.|++++|.+|++.
T Consensus 159 ~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 159 IQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEccCCCCcCHHHHHHHHHhh
Confidence 9999999999999999999754
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.63 E-value=4e-16 Score=111.56 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=76.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHH-HHH----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~-~~~----~~~~~~~~ 81 (153)
.+++.|++++|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+.....+. ..+ +...++++
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 467789999999999999999999999999998876542 47999999999999753211111 111 12234579
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|||++|.|++++|.+|++.+.+
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHhc
Confidence 999999999999999999988743
No 94
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=1.3e-15 Score=116.67 Aligned_cols=98 Identities=18% Similarity=0.357 Sum_probs=84.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-------------cccChH-HHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-------------~~v~~~-~~~ 72 (153)
..++..|++++|++++|||++++.+|..+. .|+..+.....++|+++|+||+|+.+ +.+..+ ...
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 356788999999999999999999999987 79888887766899999999999854 234443 667
Q ss_pred HHHHcCC-ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 FHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 ~~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++..++ ++++|||++|.|++++|..|.+.+..
T Consensus 297 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 8888886 89999999999999999999998865
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.62 E-value=1.7e-15 Score=107.67 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=76.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcccChHHH-HH----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~-~~----~~~~~~~ 80 (153)
..++..|++++|++|+|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+.. .+ +...+++
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCee
Confidence 356788999999999999999999999999998887654 2589999999999997532111111 11 1123457
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++|||++|.|++++|.+|.+.+..
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999987743
No 96
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.61 E-value=8.1e-16 Score=117.82 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=76.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcC--CceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN--LQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~--~~~~e 83 (153)
..+++.||+++|++|+|||++++. +|..+..|+..+... ++|+++|+||+||.+ +.+ .+...++..++ +.+++
T Consensus 75 ~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~--~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~~~~ 151 (301)
T 1u0l_A 75 NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYPIVK 151 (301)
T ss_dssp CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSCEEE
T ss_pred ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCcEEE
Confidence 357789999999999999999987 788999999877653 799999999999975 222 23456677776 89999
Q ss_pred ecCCCCCCcHHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~ 102 (153)
|||++|.|++++|..+...
T Consensus 152 ~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 152 TSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp CCTTTCTTHHHHHHHHSSS
T ss_pred EECCCCcCHHHHHHHhcCC
Confidence 9999999999999887644
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.61 E-value=9.7e-16 Score=108.70 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=80.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccC----hHHHHHHHHcCCc--
Q 031782 9 LIILICSIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK----AKQVTFHRKKNLQ-- 80 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~----~~~~~~~~~~~~~-- 80 (153)
.+++.|+++++++++|||++++ .+|..+..|+..+.....+.|+++||||+|+.+. .+. .....+++.++++
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 4678899999999999999997 5899999999988776568999999999999752 222 1134556666776
Q ss_pred --eEEecCCCCC-CcHHHHHHHHHHHhCCC
Q 031782 81 --YYEISAKSNY-NFEKPFLYLARKLAGDP 107 (153)
Q Consensus 81 --~~e~Sa~~~~-~v~~lf~~l~~~i~~~~ 107 (153)
+++|||+++. ++++++..+.+.+....
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 9999999997 99999999999887643
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=2.5e-15 Score=105.71 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=76.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHHHH-----HHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~~~-----~~~~~~~ 81 (153)
.++..|++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+.....+..... ...++++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 456889999999999999999999999999998887652 579999999999997532222222221 1123579
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|||++|.|++++|.+|.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999998854
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.59 E-value=8.3e-16 Score=109.06 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=76.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHH-HHH----HHHcCCce
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQY 81 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~-~~~----~~~~~~~~ 81 (153)
.+++.|++++|++|+|||++++++|..+..|+..+.... .+.|+++|+||+|+.+.....+. ..+ +...++++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 456789999999999999999999999999888776542 47999999999999753221221 111 22334579
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++|||++|.|++++|.+|.+.+.+.
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.37 E-value=1e-16 Score=115.30 Aligned_cols=95 Identities=20% Similarity=0.408 Sum_probs=79.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCCc-------------ccCh-HHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTF 73 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~~-------------~v~~-~~~~~ 73 (153)
.++..|++++|++|+|||++++.+|..+. .|+..+.....++|+++|+||+|+.+. .+.. +...+
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 46678999999999999999999999987 788888776567999999999999742 2222 24567
Q ss_pred HHHcCC-ceEEecCCCCCCcHHHHHHHHHHH
Q 031782 74 HRKKNL-QYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 74 ~~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++..++ ++++|||++|.|++++|.+|.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 777786 899999999999999999998765
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.59 E-value=6.6e-16 Score=119.47 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=73.7
Q ss_pred hhHhhhhcCcEEEEEEeCCCh--hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc--------ccChH-HHHHHHH--
Q 031782 10 IILICSIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--------QVKAK-QVTFHRK-- 76 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~--------~v~~~-~~~~~~~-- 76 (153)
+++.||++|+++|+|||++++ +++..+..|+..+....+++|+++||||+|+... .+..+ +.++++.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~ 144 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL 144 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC
T ss_pred hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc
Confidence 579999999999999999997 3333334445555555568999999999999752 24333 4466665
Q ss_pred --cCCceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 77 --KNLQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 77 --~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++.|++|||++ .||.++|..+++.+...
T Consensus 145 ~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 145 DGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp SCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred cccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 578999999998 59999999999887643
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.56 E-value=9.2e-15 Score=101.90 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=73.7
Q ss_pred hhhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+.+.|++ ++|++++|+|.++.++ ...|+..+... +.|+++|+||+|+.. +.+..+...+++.+++++++||
T Consensus 71 ~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (165)
T 2wji_A 71 IIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLS 145 (165)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECB
T ss_pred HHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEE
Confidence 56688886 8999999999998544 34577777654 799999999999864 3444346678888899999999
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 031782 86 AKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i 103 (153)
|++|.|++++|.+|.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998875
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=110.86 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=76.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHH-HHH----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~-~~~----~~~~~~~ 80 (153)
..++..|++++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+. ..+ +...+++
T Consensus 223 ~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 302 (329)
T 3o47_A 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY 302 (329)
T ss_dssp CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEE
T ss_pred HHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCE
Confidence 3567889999999999999999999999988877765543 58999999999999753322221 111 1223456
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++|||++|.||+++|.+|++.+.+
T Consensus 303 ~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 303 IQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.53 E-value=5.7e-14 Score=102.84 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH----HHHHHHHcC--CceE
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK----QVTFHRKKN--LQYY 82 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~----~~~~~~~~~--~~~~ 82 (153)
..++..+|++|+|||++++.+|.. ...|+..+.....+.|+++|+||+|+.+ +.+... ...++...+ ++++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 456889999999999999888762 2356666655444799999999999975 444432 346677777 8899
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+|||++|.|++++|.+|++.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.51 E-value=1.2e-13 Score=106.03 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=85.9
Q ss_pred CcchhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC-CcccChH-HHHHHHHcC--
Q 031782 3 LSCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKN-- 78 (153)
Q Consensus 3 l~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~-~~~v~~~-~~~~~~~~~-- 78 (153)
++..+......|++++|++++|+|.++..++.....|+..+... +.|+++|+||+|+. +...... ...+...++
T Consensus 78 l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~ 155 (308)
T 3iev_A 78 LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPEL 155 (308)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCC
Confidence 34566778899999999999999999988888888888888775 79999999999997 4444333 556777775
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.+++++||++|.|++++|..|.+.+....
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 78999999999999999999999986543
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.50 E-value=2.3e-13 Score=98.27 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=64.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChh-hHhhHHHH-HHHHHhh---cCCCcEEEEeeCCCCCCcccChH-HHHHH--------
Q 031782 9 LIILICSIHGQCAIIMFDVTARL-TYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAK-QVTFH-------- 74 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~-~~~i~~~---~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~-------- 74 (153)
.++..|++++|++|+|||+++.. ++.....| ...+... ..++|+++|+||+|+.+...... ...+.
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 149 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 37888999999999999999854 46655544 4444332 24789999999999975321111 11111
Q ss_pred ---------------------------H-Hc--CCceEEecCCCC------CCcHHHHHHHHHH
Q 031782 75 ---------------------------R-KK--NLQYYEISAKSN------YNFEKPFLYLARK 102 (153)
Q Consensus 75 ---------------------------~-~~--~~~~~e~Sa~~~------~~v~~lf~~l~~~ 102 (153)
. .+ ++.|++|||++| .||+++|.+|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 11 567999999999 9999999999875
No 107
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=4.6e-13 Score=95.89 Aligned_cols=98 Identities=31% Similarity=0.466 Sum_probs=83.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~S 85 (153)
.++..|+++++++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.+ +.+... ...++...++.+++||
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~S 148 (199)
T 2f9l_A 69 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETS 148 (199)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEe
Confidence 467789999999999999999999999999998876653 4789999999999975 444433 6688888899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|+++.|++++|.+|.+.+.+.
T Consensus 149 al~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.49 E-value=2.1e-13 Score=110.48 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=76.0
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcccChHHHH-H----HHHcCCc
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQ 80 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~v~~~~~~-~----~~~~~~~ 80 (153)
..++..||+++|++|+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+... + +...+++
T Consensus 380 ~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 459 (497)
T 3lvq_E 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWY 459 (497)
T ss_dssp SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEE
T ss_pred HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeE
Confidence 3567889999999999999999999999999988876542 4799999999999975322111111 1 1112345
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++|||++|.||+++|.+|.+.+...
T Consensus 460 ~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 460 VQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999888544
No 109
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.48 E-value=1.9e-14 Score=112.57 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=79.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCC----------hhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCc-----------
Q 031782 8 VLIILICSIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR----------- 64 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~----------- 64 (153)
..++.+||++++++|+|||+++ .++|.....|+..+... ..++|+++|+||+|+.+.
T Consensus 207 r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~f 286 (353)
T 1cip_A 207 RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY 286 (353)
T ss_dssp GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTC
T ss_pred hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcc
Confidence 4578999999999999999999 56788888888887764 257999999999998531
Q ss_pred -----ccCh-HHHHHHH-----------HcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 65 -----QVKA-KQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 65 -----~v~~-~~~~~~~-----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+.. ++..++. ..++.+++|||+++.||.++|.++.+.+.+
T Consensus 287 p~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 287 PEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp TTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 1333 3556665 345789999999999999999999998864
No 110
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.48 E-value=4.5e-14 Score=108.24 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=75.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cC--hHHHHHHHHcCCceEE
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK--AKQVTFHRKKNLQYYE 83 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~--~~~~~~~~~~~~~~~e 83 (153)
..+.+.|++++|++++|||+++++ ++..+..|+..+... ++|+++|+||+|+.+.. +. .+...+++..++++++
T Consensus 70 ~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~--~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~ 147 (302)
T 2yv5_A 70 NLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF--KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLK 147 (302)
T ss_dssp CEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEE
Confidence 356678999999999999999986 899899999877653 89999999999997532 12 2244667778899999
Q ss_pred ecCCCCCCcHHHHHHHHH
Q 031782 84 ISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~ 101 (153)
+||++|.|+++++..+..
T Consensus 148 ~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 148 VSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CCTTTCTTHHHHHHHTTT
T ss_pred EECCCCCCHHHHHhhccC
Confidence 999999999999987643
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.48 E-value=1.1e-13 Score=106.21 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=78.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHH---HHhhcCCCcEEEEeeCCCCCC---cc----cC-hHHHHHHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRD---LCRVCENIPIVLCGNKVDVKN---RQ----VK-AKQVTFHRK 76 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~---i~~~~~~~p~vlv~nK~Dl~~---~~----v~-~~~~~~~~~ 76 (153)
..++..|++++|++|+|||++++.+|+.+..|... +.....++|+++|+||+|+.+ +. +. .+...+++.
T Consensus 71 ~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~ 150 (307)
T 3r7w_A 71 TKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE 150 (307)
T ss_dssp TTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999777544 444456899999999999975 22 22 235678888
Q ss_pred cC---CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 77 KN---LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 77 ~~---~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+| +++++|||++ .|+.++|..+++.+..
T Consensus 151 ~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 151 FGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp TTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred cCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 87 7899999999 8999999998876643
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.47 E-value=1.2e-13 Score=94.94 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=66.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEecC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISA 86 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sa 86 (153)
......+++++|++++|||.++..+. ...|+..+... .+.|+++|+||+|+.+.. .+...++ .+++ ++++|||
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa 143 (161)
T 2dyk_A 70 QEKVDRALEDAEVVLFAVDGRAELTQ--ADYEVAEYLRR-KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSS 143 (161)
T ss_dssp HHHHHHHTTTCSEEEEEEESSSCCCH--HHHHHHHHHHH-HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBT
T ss_pred HHHHHHHHHhCCEEEEEEECCCcccH--hHHHHHHHHHh-cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEec
Confidence 44567789999999999999985332 22333332222 278999999999997531 2233444 5676 8999999
Q ss_pred CCCCCcHHHHHHHHHHH
Q 031782 87 KSNYNFEKPFLYLARKL 103 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i 103 (153)
++|.|++++|.+|++.+
T Consensus 144 ~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 144 EHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred ccCCChHHHHHHHHHhC
Confidence 99999999999998875
No 113
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.47 E-value=2e-14 Score=112.46 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=76.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCC----------ChhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCcc---cC-----
Q 031782 8 VLIILICSIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ---VK----- 67 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~~---v~----- 67 (153)
..++.+||++++++|+|||++ +.++|.....|+..+... ..++|++|||||+|+.+.. +.
T Consensus 197 r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~ 276 (354)
T 2xtz_A 197 RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276 (354)
T ss_dssp GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSG
T ss_pred hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccc
Confidence 457899999999999999998 778999999998887764 2589999999999985311 11
Q ss_pred ---------------hHHHHHHHH----------------cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 68 ---------------AKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 68 ---------------~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.++..++.. ..+.+++|||+++.||+++|.++++.+.+
T Consensus 277 ~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 277 WFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp GGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 223445332 12446899999999999999999988864
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.46 E-value=8.4e-14 Score=98.25 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=75.7
Q ss_pred hhhhHhhhhc-CcEEEEEEeCCChhhHhhH-HHHHHH--------HHhh--cCCCcEEEEeeCCCCCCcccChHHHHHHH
Q 031782 8 VLIILICSIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR 75 (153)
Q Consensus 8 ~~~~~~~~~~-ad~~ilv~d~~~~~s~~~~-~~~~~~--------i~~~--~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~ 75 (153)
..+...|+++ +++++++|++++..+|..+ ..|... +... ..++|+++|+||+|+.... ......+++
T Consensus 69 ~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~ 147 (190)
T 2cxx_A 69 KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAE 147 (190)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHH
Confidence 3456778887 8888888888888888876 567642 2221 1479999999999997543 233567888
Q ss_pred HcCCc-------eEEecCCCCCCcHHHHHHHHHHHhCCCC
Q 031782 76 KKNLQ-------YYEISAKSNYNFEKPFLYLARKLAGDPN 108 (153)
Q Consensus 76 ~~~~~-------~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 108 (153)
.++.+ +++|||++|.|++++|.+|.+.+....+
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 88864 6999999999999999999999876543
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.44 E-value=3e-14 Score=100.13 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=68.1
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
..+++++|++++|||.+++.++. ...|+..+.... .++|+++|+||+|+.+... .++...+.++++|||++|.
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCT
T ss_pred HHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCC
Confidence 46799999999999999988876 456777776653 4699999999999854211 1122245789999999999
Q ss_pred CcHHHHHHHHHHHhC
Q 031782 91 NFEKPFLYLARKLAG 105 (153)
Q Consensus 91 ~v~~lf~~l~~~i~~ 105 (153)
|++++|.+|.+.+..
T Consensus 152 gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 152 GVDVLRNHLKQSMGF 166 (172)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999987743
No 116
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.44 E-value=1.2e-12 Score=93.30 Aligned_cols=96 Identities=30% Similarity=0.479 Sum_probs=81.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEe
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~ 84 (153)
..+...|+++++++++|||.++..+|..+..|+..+.... .+.|+++++||+|+.+ +.+... ...++...++.++++
T Consensus 92 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~ 171 (191)
T 1oix_A 92 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIET 171 (191)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 3467788999999999999999999999999998776653 4689999999999975 344433 668888889999999
Q ss_pred cCCCCCCcHHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i 103 (153)
||+++.|++++|+.|.+.+
T Consensus 172 Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 117
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.44 E-value=6.3e-14 Score=111.18 Aligned_cols=98 Identities=12% Similarity=0.063 Sum_probs=77.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCC----------hhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCC-cc---cC----
Q 031782 8 VLIILICSIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQ---VK---- 67 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~-~~---v~---- 67 (153)
..++..||++++++|+|||+++ .++|.....|+..+... ..++|++|||||+|+.+ +. +.
T Consensus 231 r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~ 310 (402)
T 1azs_C 231 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIED 310 (402)
T ss_dssp GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGG
T ss_pred hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhh
Confidence 4678999999999999999999 88999999999888765 25799999999999853 11 20
Q ss_pred ------------------------hHHHHH-----HHH--------cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 68 ------------------------AKQVTF-----HRK--------KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 68 ------------------------~~~~~~-----~~~--------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.++..| +.. .++.+++|||+++.||.++|.++...+.+
T Consensus 311 ~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 311 YFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp TCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 123333 222 24567899999999999999999888764
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.43 E-value=2.4e-13 Score=96.01 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=76.5
Q ss_pred hhhHhhhhc--CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICSIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~--ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+...|++. +|++++|+|.++ +.....|+..+... +.|+++|+||+|+.. +.+......+++.+++++++||
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 75 IIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECB
T ss_pred HHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEE
Confidence 457778864 999999999885 55566788777664 789999999999864 3444456788888899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhCCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~~ 107 (153)
|+++.|++++|.++++.+....
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999986543
No 119
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.40 E-value=1.2e-13 Score=108.37 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=75.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCC----------hhhHhhHHHHHHHHHhh--cCCCcEEEEeeCCCCCCc------------
Q 031782 9 LIILICSIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR------------ 64 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~vlv~nK~Dl~~~------------ 64 (153)
.++.+||++++++|||||+++ .++|.....|+..+... ..+.|+++|+||+|+.+.
T Consensus 216 ~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp 295 (362)
T 1zcb_A 216 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFL 295 (362)
T ss_dssp --CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCT
T ss_pred hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCc
Confidence 467899999999999999999 77999988888887764 258999999999998631
Q ss_pred -----ccChH-HHHHH--------H---HcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 65 -----QVKAK-QVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 65 -----~v~~~-~~~~~--------~---~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+..+ +..++ + ..++.+++|||+++.||.++|.++.+.+.+
T Consensus 296 ~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 296 EFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp TCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 13333 44444 1 345778999999999999999999988864
No 120
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.39 E-value=2.4e-12 Score=100.55 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=76.7
Q ss_pred hHhhhhcCcEEEEEEeCCChh--hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
...+...+|++++|+|+++.. ++.....|+..+.....+.|+++|+||+|+.......+...++...++++++|||++
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTT
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCC
Confidence 335667899999999999876 677778898888776557999999999999753212234456677789999999999
Q ss_pred CCCcHHHHHHHHHHHhC
Q 031782 89 NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~ 105 (153)
|+|++++|.+|.+.+..
T Consensus 320 g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999988843
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.38 E-value=2.8e-12 Score=90.89 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=67.7
Q ss_pred hhhHhhhhcC---cEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccChHHHHH----HHHcCCc
Q 031782 9 LIILICSIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTF----HRKKNLQ 80 (153)
Q Consensus 9 ~~~~~~~~~a---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~~~~~~----~~~~~~~ 80 (153)
.+...|++++ |++++|+|.++..++.... ++..+.. .+.|+++|+||+|+.+. .+......+ +...+.+
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 4577888888 9999999999877766543 1222222 37899999999999753 232222222 2233578
Q ss_pred eEEecCCCCCCcHHHHHHHHHHHh
Q 031782 81 YYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++++||++|.|++++|.+|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998774
No 122
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.38 E-value=7.5e-13 Score=105.74 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=78.6
Q ss_pred cchhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 4 SCFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 4 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
+..+...+..+++++|++|+|||.+..+ ....|+..+... ++|+++|+||+|+...........+++.+++++++
T Consensus 100 ~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~ 174 (423)
T 3qq5_A 100 GRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLL 174 (423)
T ss_dssp CCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCC
T ss_pred hHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEE
Confidence 4455666788999999999999994332 345677777766 79999999999998644334455667777899999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||++|.|++++|.+|.+.+...
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999665
No 123
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.37 E-value=1.3e-12 Score=97.89 Aligned_cols=91 Identities=9% Similarity=0.012 Sum_probs=74.3
Q ss_pred hhhHhhh--hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICS--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+++.|+ .++|++++|+|.++.++. ..|...+... ++|+++|+||+|+.+ +.+......+++.+|++++++|
T Consensus 73 ~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 73 KIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTS 147 (258)
T ss_dssp HHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECC
T ss_pred HHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEE
Confidence 3567887 489999999999986543 3466666654 799999999999864 3444446788899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHh
Q 031782 86 AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~ 104 (153)
|++|.|++++|.++.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998875
No 124
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.37 E-value=1.7e-12 Score=106.27 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=76.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-HHHHHHHcCCceEEecC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISA 86 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sa 86 (153)
.+...|++++|++|+|||+++ ++.+..|+..+.....+.|+++|+||+|+.+ +.+..+ ...++...++++++|||
T Consensus 113 ~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA 189 (535)
T 3dpu_A 113 ASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISC 189 (535)
T ss_dssp TTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC
T ss_pred HHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEec
Confidence 467789999999999999975 4667789999988866799999999999975 444444 55677778889999999
Q ss_pred CCCCCcHHHHHHHHHHHhCCC
Q 031782 87 KSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~~~ 107 (153)
++|.|++++|..+.+.+....
T Consensus 190 ~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -----CTTHHHHHHHHHTCTT
T ss_pred CcccCHHHHHHHHHHHHhccc
Confidence 999999999999999987643
No 125
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.36 E-value=3.1e-13 Score=104.62 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=76.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCC----------ChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCc-----------
Q 031782 8 VLIILICSIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR----------- 64 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~----------- 64 (153)
..++.+||++++++|+|||++ +.++|.....|+..+.... .++|+++++||+|+.++
T Consensus 181 R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~f 260 (327)
T 3ohm_A 181 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYF 260 (327)
T ss_dssp HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTC
T ss_pred HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhc
Confidence 457889999999999999665 5677777777777776542 57999999999998642
Q ss_pred ------ccChH-HHHHH----------HHcCCceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 65 ------QVKAK-QVTFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 65 ------~v~~~-~~~~~----------~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+..+ +..+. ...++.+++|||+++.||+.+|..+.+.|.+.
T Consensus 261 p~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 261 PEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp TTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 12333 44452 23457789999999999999999999999764
No 126
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.35 E-value=3.1e-12 Score=99.60 Aligned_cols=96 Identities=19% Similarity=0.296 Sum_probs=78.2
Q ss_pred hhHhhhhc---CcEEEEEEeCCC---hhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChHHHHHHHHcC--
Q 031782 10 IILICSIH---GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-- 78 (153)
Q Consensus 10 ~~~~~~~~---ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-- 78 (153)
+...|++. ++++|+|+|+++ ++++..+..|..++..+. .++|+++|+||+|+.... .....+++.++
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~ 303 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDD 303 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSC
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcC
Confidence 45566654 999999999998 789999999999998764 479999999999986421 12445666666
Q ss_pred CceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 79 LQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 79 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.+++++||+++.|+++++.+|.+.+....
T Consensus 304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 304 YPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 68999999999999999999999986543
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.35 E-value=3.5e-12 Score=90.11 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred hhhhHhhhhcC---cEEEEEEeCCChhh--HhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc---C-hHHHHHHHHcC
Q 031782 8 VLIILICSIHG---QCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---K-AKQVTFHRKKN 78 (153)
Q Consensus 8 ~~~~~~~~~~a---d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v---~-~~~~~~~~~~~ 78 (153)
..+...|++++ |++++|+|.++..+ +..+..|+.. . +.|+++|+||+|+.+... . .+...++...+
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 35667888887 99999999987533 3333344433 2 789999999999974221 1 12334555534
Q ss_pred -CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 79 -LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 79 -~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++++|||++|.|++++|.+|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999988753
No 128
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.33 E-value=2e-12 Score=97.66 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=73.8
Q ss_pred hhhHhhhh--cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEec
Q 031782 9 LIILICSI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+++.|+. ++|++|+|+|.++.+++ ..|...+... ++|+++|+||+|+.+ +.+......+++.+++++++||
T Consensus 70 ~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~S 144 (272)
T 3b1v_A 70 KVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIET--GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATS 144 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECB
T ss_pred HHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEE
Confidence 56788887 59999999999986554 3466666554 799999999999864 3444446778888999999999
Q ss_pred CCCCCCcHHHHHHHHHHHh
Q 031782 86 AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~ 104 (153)
|++|.|++++|.++.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.31 E-value=8.9e-13 Score=98.75 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred hhhhHhhh--hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEe
Q 031782 8 VLIILICS--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 8 ~~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~ 84 (153)
-.+.+.|+ +++|++|+|+|.++.+++..+.. .+... ++|+++|+||+|+.+ +.+......+++.++++++++
T Consensus 72 e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 72 EQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEEC
T ss_pred HHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEE
Confidence 34788898 89999999999999766554333 33333 799999999999874 333333556888889999999
Q ss_pred cCCCCCCcHHHHHHHHHH
Q 031782 85 SAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~ 102 (153)
||++|.|++++|.++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.31 E-value=8e-13 Score=99.82 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=73.6
Q ss_pred hhhhhhHhhh--hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceE
Q 031782 6 FNVLIILICS--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 6 ~~~~~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~ 82 (153)
..-.+.+.|+ +++|++|+|+|.++.++... |...+... ++|+++|+||+|+.+ +.+......+++.+|++++
T Consensus 72 ~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 72 LDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVI 146 (274)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEE
Confidence 3445667776 79999999999998665544 44444444 799999999999864 3333335678888899999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++||++|.|++++|.++.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999877654
No 131
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.30 E-value=3.4e-12 Score=89.04 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=63.5
Q ss_pred hhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHH-------cC-
Q 031782 10 IILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN- 78 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~-------~~- 78 (153)
++..++.++|++|+|||+++. .++.. +..+.. .++|+++|+||+|+.+... .+....... ++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 71 MRARGAQVTDIVILVVAADDGVMPQTVEA----INHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp SCCSSCCCCCEEEEEEETTCCCCHHHHHH----HHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTS
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHHHH----HHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCC
Confidence 456788999999999999983 33332 223332 3789999999999975311 112222222 22
Q ss_pred -CceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 79 -LQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 79 -~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++++|||++|.|++++|.+|++.+...
T Consensus 144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 144 DTIFCKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence 5799999999999999999999888653
No 132
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.29 E-value=1e-12 Score=102.20 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=76.2
Q ss_pred hhhhHhhhhcCcEEEEEEeCC----------ChhhHhhHHHHHHHHHhhc--CCCcEEEEeeCCCCCCcc----------
Q 031782 8 VLIILICSIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ---------- 65 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~--~~~p~vlv~nK~Dl~~~~---------- 65 (153)
..++.+||++++++|+|||++ +.++|.....|+..+.... .++|++|++||+|+.++.
T Consensus 175 R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~f 254 (340)
T 4fid_A 175 RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIF 254 (340)
T ss_dssp HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTC
T ss_pred cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhh
Confidence 467899999999999999998 6788888888887776542 589999999999985311
Q ss_pred ------cCh-HHHHH-HHHc--------------------------CCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 66 ------VKA-KQVTF-HRKK--------------------------NLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 66 ------v~~-~~~~~-~~~~--------------------------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
... ++..+ ...+ ++.+++|||++..||+.+|..+.+.|.+
T Consensus 255 p~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 255 PEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 111 22222 2222 3678999999999999999999999876
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.28 E-value=1.1e-11 Score=100.31 Aligned_cols=95 Identities=7% Similarity=-0.019 Sum_probs=68.9
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
+..+..|++++|++++|||.+++.++..+..+...+... .+.|+++|+||+|+...... ....+......++++|||+
T Consensus 303 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~-~~~~l~~~~~~~~i~vSAk 380 (476)
T 3gee_A 303 IRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADA-LIRAIADGTGTEVIGISAL 380 (476)
T ss_dssp -----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHH-HHHHHHHHHTSCEEECBTT
T ss_pred HHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccch-hHHHHHhcCCCceEEEEEC
Confidence 455677999999999999999988887554444333332 37899999999999753211 1233444434789999999
Q ss_pred CCCCcHHHHHHHHHHHh
Q 031782 88 SNYNFEKPFLYLARKLA 104 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~ 104 (153)
+|.|++++|.+|.+.+.
T Consensus 381 tg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 381 NGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTBSHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999987
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.27 E-value=4.5e-11 Score=95.62 Aligned_cols=92 Identities=9% Similarity=0.035 Sum_probs=71.3
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC-hHH-HHHHHH----cCCceEE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQ-VTFHRK----KNLQYYE 83 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~-~~~-~~~~~~----~~~~~~e 83 (153)
...+++++|++++|+|.++..++++. .|+..+... +.|+++|+||+|+.+ +... .+. ..+.+. .++++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 44689999999999999998787765 577666554 799999999999975 3322 122 223333 3678999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|++++|..+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988865
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.25 E-value=6.5e-11 Score=95.20 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=70.4
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccCh-HHHHHHHHc-----CC
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-----NL 79 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~~-----~~ 79 (153)
.......|++.||++|+|+|.++.-+ .....|...+... ++|+++|+||+|+.+ +.+.. +..+.++.. ++
T Consensus 267 ~~~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 267 SVLRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT--TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHc--CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence 33344468999999999999997432 2233455555543 799999999999975 33332 234444443 57
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
++++|||++|.|++++|..+.+.+...
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 899999999999999999999988653
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.24 E-value=3e-11 Score=87.44 Aligned_cols=96 Identities=15% Similarity=0.011 Sum_probs=66.8
Q ss_pred hhhhHhhhhc---CcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccC---hHHH-HHHHH---
Q 031782 8 VLIILICSIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---AKQV-TFHRK--- 76 (153)
Q Consensus 8 ~~~~~~~~~~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~---~~~~-~~~~~--- 76 (153)
..+...|+++ +|++++|+|.++..+. ....|+..+... ++|+++|+||+|+... ... .... .+...
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 3466678887 7889999999874321 223455555543 7899999999999752 211 1111 22232
Q ss_pred ---cCCceEEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 77 ---KNLQYYEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 77 ---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
.+.+++++||++|.|++++|.+|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 457899999999999999999999988654
No 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.18 E-value=8.3e-11 Score=92.36 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=70.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-H----HHHHHHcCC---c
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---Q 80 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~----~~~~~~~~~---~ 80 (153)
.+.++|+++++++++|+|++++. ..|...+.+...+.|+++|+||+|+.......+ . ..+++..|+ .
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~ 135 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPED 135 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSE
T ss_pred HHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCccc
Confidence 46678999999999999999863 346666666656899999999999976443222 2 234666777 7
Q ss_pred eEEecCCCCCCcHHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++.+||++|.|+++++..+.+..
T Consensus 136 v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 136 VFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCcCHHHHHhhhhhhc
Confidence 99999999999999999997754
No 138
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.18 E-value=1.5e-11 Score=94.20 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=71.0
Q ss_pred chhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHH-cC-Cce
Q 031782 5 CFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KN-LQY 81 (153)
Q Consensus 5 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~-~~-~~~ 81 (153)
..+......|++++|++++|||.++..+. ...|+ ..+.....+.|+++|+||+|+.+.... ....+.. .+ .++
T Consensus 74 ~~~~~~~~~~l~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~ 149 (301)
T 1wf3_A 74 EFMDQEVYEALADVNAVVWVVDLRHPPTP--EDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEP 149 (301)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEETTSCCCH--HHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCCCCh--HHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcE
Confidence 34567788999999999999999986433 34555 455544347899999999998642110 1222222 23 468
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhCC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+++||++|.|++++|..|...+...
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCCCCHHHHHHHHHHhcccC
Confidence 9999999999999999999877553
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.18 E-value=1e-10 Score=94.82 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=67.6
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~ 87 (153)
..+..|++++|++|+|||.+++.++....-| +.+ .+.|+++|+||+|+.+. +..+ ...++ ..+.++++|||+
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l----~~~piivV~NK~DL~~~-~~~~~~~~~~-~~~~~~i~iSAk 387 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI----KNKRYLVVINKVDVVEK-INEEEIKNKL-GTDRHMVKISAL 387 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH----TTSSEEEEEEECSSCCC-CCHHHHHHHH-TCSTTEEEEEGG
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh----cCCCEEEEEECcccccc-cCHHHHHHHh-cCCCcEEEEECC
Confidence 4567899999999999999988777654322 322 37899999999999653 2222 22332 234689999999
Q ss_pred CCCCcHHHHHHHHHHHh
Q 031782 88 SNYNFEKPFLYLARKLA 104 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~ 104 (153)
+|.|++++|.+|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999999875
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.16 E-value=5.7e-11 Score=89.27 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=72.3
Q ss_pred hhHhhh--hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChHHHHHHHHcCCceEEecC
Q 031782 10 IILICS--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISA 86 (153)
Q Consensus 10 ~~~~~~--~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sa 86 (153)
+.+.|+ .++|++++|+|.++.+ ....|...+... ...|+++|+||+|+.+ +.+......+++.++++++++||
T Consensus 72 ~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa 147 (271)
T 3k53_A 72 IARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNA 147 (271)
T ss_dssp HHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBG
T ss_pred HHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEe
Confidence 677888 6899999999999853 223344444444 1399999999999864 33333366788889999999999
Q ss_pred CCCCCcHHHHHHHHHHHhCC
Q 031782 87 KSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~~ 106 (153)
++|.|++++|..+...+...
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988654
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.14 E-value=2.2e-10 Score=90.77 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccC-hHHH---HHHHHc---CC
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQV---TFHRKK---NL 79 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~-~~~~---~~~~~~---~~ 79 (153)
....+..++.++|++|+|+|.++..++.+..+|+..+.... ..|+++|+||+|+.+.... .... .+.... ++
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (403)
T 3sjy_A 88 LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENV 166 (403)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCC
Confidence 44566778899999999999998776777777877666552 3589999999999753211 1111 222222 56
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++++||++|.|++++++.|.+.+..
T Consensus 167 ~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 167 PIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcChHHHHHHHHHhCCC
Confidence 89999999999999999999987754
No 142
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.14 E-value=6.2e-11 Score=86.22 Aligned_cols=97 Identities=7% Similarity=-0.030 Sum_probs=65.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH----hh--cCCCcEEEEeeCC-CCCCcccChHH-HHH--HH-H
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC----RV--CENIPIVLCGNKV-DVKNRQVKAKQ-VTF--HR-K 76 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~----~~--~~~~p~vlv~nK~-Dl~~~~v~~~~-~~~--~~-~ 76 (153)
..++++||.++|++|||+|.+|++.++ ...-+.++. .. ..++|+++++||. |+.......+. ..+ .. .
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 357899999999999999999986554 333232222 11 1478999999995 77643222221 111 00 1
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
....+..|||.+|+|+.+.++||+..+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 23457899999999999999999987743
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.13 E-value=1.5e-10 Score=92.66 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHH-HHHHHHcCC-ceEEe
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEI 84 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~-~~~~~~~~~-~~~e~ 84 (153)
+...+..|+++||++++|+|.++..++.+ .|+..+.+. .++|+++|+||+|+.+. ..... ..++ ..++ .++++
T Consensus 71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~-~~~p~ilv~NK~D~~~~-~~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 71 MKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK-STVDTILVANKAENLRE-FEREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH-HTCCEEEEEESCCSHHH-HHHHTHHHHG-GGSSCSCEEC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH-cCCCEEEEEeCCCCccc-cHHHHHHHHH-hcCCCCEEEE
Confidence 45667889999999999999987544332 233332222 17899999999998532 11122 3343 4565 78999
Q ss_pred cCCCCCCcHHHHHHHHHHHhCC
Q 031782 85 SAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 85 Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
||++|.|+.+++.++.+.+...
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred eccCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999998753
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.12 E-value=2.7e-10 Score=94.52 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=75.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC---ceEEec
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 85 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~---~~~e~S 85 (153)
..+..+++.+|++|+|+|.++..+++....|...... ++|+++|+||+|+.+........++...+++ .++++|
T Consensus 86 ~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vS 162 (599)
T 3cb4_D 86 YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCS 162 (599)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEEC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEee
Confidence 3456788999999999999998778877788755532 7899999999999764322224566777776 499999
Q ss_pred CCCCCCcHHHHHHHHHHHhCC
Q 031782 86 AKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~~ 106 (153)
|++|.|+++++.++++.++..
T Consensus 163 Aktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 163 AKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TTTCTTHHHHHHHHHHHSCCC
T ss_pred cccCCCchhHHHHHhhcCCCc
Confidence 999999999999999988653
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.10 E-value=3.6e-10 Score=93.75 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=74.5
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC---ceEEecC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISA 86 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sa 86 (153)
....+++.+|++|+|+|.++..+++....|..... .++|+++|+||+|+.+........++...+++ .++++||
T Consensus 89 ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSA 165 (600)
T 2ywe_A 89 EVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165 (600)
T ss_dssp HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBT
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEe
Confidence 45567899999999999999877887777865543 27899999999999764322224566666676 4899999
Q ss_pred CCCCCcHHHHHHHHHHHhC
Q 031782 87 KSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 87 ~~~~~v~~lf~~l~~~i~~ 105 (153)
++|.|++++++++++.++.
T Consensus 166 ktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 166 KEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TTTBSHHHHHHHHHHHSCC
T ss_pred ecCCCchHHHHHHHHhccc
Confidence 9999999999999998864
No 146
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.10 E-value=6.2e-11 Score=85.58 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=58.5
Q ss_pred hhhHhhhhc----CcEEEEEEeCC-ChhhHhhHHHHHHHHHhh-----cCCCcEEEEeeCCCCCCc-ccC-------hHH
Q 031782 9 LIILICSIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNR-QVK-------AKQ 70 (153)
Q Consensus 9 ~~~~~~~~~----ad~~ilv~d~~-~~~s~~~~~~~~~~i~~~-----~~~~p~vlv~nK~Dl~~~-~v~-------~~~ 70 (153)
.+...|+++ +|++|+|||.+ ++.+|.....|+..+... ..++|+++|+||+|+... .+. .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 456778887 99999999999 888999999998877654 147999999999999753 222 123
Q ss_pred HHHHHHcCCceEEecCCCCCC
Q 031782 71 VTFHRKKNLQYYEISAKSNYN 91 (153)
Q Consensus 71 ~~~~~~~~~~~~e~Sa~~~~~ 91 (153)
..++...+..++++||++|.+
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 150 QKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHC--------
T ss_pred HHHHHHHhccccccccccccc
Confidence 456667778899999998876
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.03 E-value=3.1e-10 Score=91.53 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=64.2
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
..+..+++++|++++|+|.+++.++.. ..|+..+. ..|+++|+||+|+...........+. .+.+++++||++
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAkt 367 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQ 367 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTT
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCC
Confidence 345668899999999999998755543 34544443 47999999999997522111111111 356899999999
Q ss_pred CCCcHHHHHHHHHHHhCC
Q 031782 89 NYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 89 ~~~v~~lf~~l~~~i~~~ 106 (153)
|.|++++|.+|.+.+...
T Consensus 368 g~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TBSHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999988653
No 148
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=6.7e-10 Score=87.20 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=68.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HH----HHHHHcCC---c
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---Q 80 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~----~~~~~~~~---~ 80 (153)
.+.++++++++++++|+|++++++ .|..++.+...+.|+++|+||+|+.......+ .. .+++..|. .
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVD 137 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSE
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCccc
Confidence 456788899999999999999763 35445555555789999999999976443222 22 33566676 6
Q ss_pred eEEecCCCCCCcHHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++.+||++|.|+++++..+.+..
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 89999999999999999998765
No 149
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.99 E-value=3.1e-10 Score=90.73 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC-ceEEec
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEIS 85 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~-~~~e~S 85 (153)
....+..|+++||++|+|+|.++..++.+ .|+..+.+. .++|+++|+||+|+..... ...+++ ..++ .++++|
T Consensus 72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iS 145 (436)
T 2hjg_A 72 IRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPIS 145 (436)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECB
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEe
Confidence 44567889999999999999998655443 344443332 3789999999999864211 011222 3454 789999
Q ss_pred CCCCCCcHHHHHHHHHHHhC
Q 031782 86 AKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 86 a~~~~~v~~lf~~l~~~i~~ 105 (153)
|++|.|+.+++.++...+..
T Consensus 146 A~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGGG
T ss_pred CcCCCChHHHHHHHHHhcCc
Confidence 99999999999999998864
No 150
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=82.88 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=66.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHH---H-HHhh--cCCCcEEEEeeC-CCCCCcccChHH-HHH--HH-H
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHR---D-LCRV--CENIPIVLCGNK-VDVKNRQVKAKQ-VTF--HR-K 76 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~---~-i~~~--~~~~p~vlv~nK-~Dl~~~~v~~~~-~~~--~~-~ 76 (153)
..+.++||.++|++|||+|.+|++.++ ...-+. . +... ..++|+++++|| .|+.......+. ..+ .. .
T Consensus 201 RplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~ 279 (312)
T 3l2o_B 201 IPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 279 (312)
T ss_dssp CHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCC
Confidence 457899999999999999999987654 222222 1 2111 147999999997 588653222221 111 00 1
Q ss_pred cCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 77 KNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 77 ~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
....+..|||.+|+|+.+.++||+..+..
T Consensus 280 r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 280 HPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred CcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 23457899999999999999999998844
No 151
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.98 E-value=3.2e-09 Score=83.25 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=70.2
Q ss_pred hHhhhhcCcEEEEEEeCCChh--hHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccCh---HHHHHHHHc---CCce
Q 031782 11 ILICSIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQY 81 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~--s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~---~~~~~~~~~---~~~~ 81 (153)
+..++..+|++++|+|.+++. ++..+..|...+.... .+.|+++|+||+|+.+..... ....++... +.++
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 344688999999999999876 6666666666555542 478999999999987533211 122334554 2468
Q ss_pred EEecCCCCCCcHHHHHHHHHHHhC
Q 031782 82 YEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+++||+++.|+++++..|.+.+..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999999988764
No 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.96 E-value=7.5e-10 Score=84.59 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=69.6
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC-hHHHHHHHHcCC-ceEE
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYE 83 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~-~~~~~~~~~~~~-~~~e 83 (153)
+......+++.+|++++|+|.++ +.....|+-+.... .+.|+++|+||+|+.. +... .....++..++. .++.
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence 34456788899999999999976 44444555333322 3789999999999875 2222 223455555665 6899
Q ss_pred ecCCCCCCcHHHHHHHHHHHhCC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~~ 106 (153)
+||+++.|+++++..+...+...
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCBC
T ss_pred EECCCCCCHHHHHHHHHHhCCcC
Confidence 99999999999999999877653
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.91 E-value=3.8e-09 Score=84.50 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccChH-H-HHHHHH----cCCceEE
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-Q-VTFHRK----KNLQYYE 83 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~~-~-~~~~~~----~~~~~~e 83 (153)
...+++.+|++++|+|.++..++.+. .+...+.. .+.|+++|+||+|+.+ +..... . ..+... .+.++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 35688999999999999986555442 22333333 3799999999999975 322221 1 223333 3578999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|++++|..+.+.+..
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.91 E-value=5.7e-09 Score=85.44 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=41.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.++..+......|. .+... ++|+++|+||+|+..
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDRDT 148 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTSCC
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCCcc
Confidence 45678899999999999999876666666554 33333 799999999999864
No 155
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.91 E-value=6.1e-09 Score=84.39 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=66.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc----ChHHHHHHHHc---
Q 031782 8 VLIILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK--- 77 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v----~~~~~~~~~~~--- 77 (153)
...+..++.++|++|+|+|.++ +.+++.+ ..+... ++|.++|+||+|+.+... ..+...++...
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 3455678899999999999987 4444433 233333 688999999999975211 12233445544
Q ss_pred -CCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 78 -NLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 78 -~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+.+++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999999875
No 156
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.89 E-value=4.3e-09 Score=79.77 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=66.2
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
-...+++.+|++++|+|..++.+... +..|+ .++|.++|.||+|+.+........++.+..+++++.+||+
T Consensus 16 ~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~ 88 (282)
T 1puj_A 16 EVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV 88 (282)
T ss_dssp HHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred HHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECC
Confidence 34567889999999999999877653 33332 4789999999999975321112234445567899999999
Q ss_pred CCCCcHHHHHHHHHHHh
Q 031782 88 SNYNFEKPFLYLARKLA 104 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~ 104 (153)
++.|+++++..+.+.+.
T Consensus 89 ~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 89 NGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TCTTGGGHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHH
Confidence 99999999998877664
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.81 E-value=2.1e-09 Score=88.11 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=65.3
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---cChHHHHH---HHHc--CC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTF---HRKK--NL 79 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---v~~~~~~~---~~~~--~~ 79 (153)
..++..+++.+|++|+|+|.++....+....| ..+.. .++|+++|+||+|+.+.. +..+...+ +..+ .+
T Consensus 66 ~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 66 SAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp TTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred HHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 34566788999999999999986544433333 23333 378999999999997522 22222111 1122 24
Q ss_pred ceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 80 QYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 80 ~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+++++||++|.|++++|++|...+.
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhh
Confidence 7899999999999999999998774
No 158
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.81 E-value=2.4e-08 Score=79.51 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCC
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 91 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~ 91 (153)
+..++.+++++|++ ..++..+..|..++..+. ...|.++|+||+|+............+...+..++.+||++++|
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 34699999999998 567888888877776653 26899999999998754111223344555678899999999999
Q ss_pred cHHHHHHHHHHHhCCCC
Q 031782 92 FEKPFLYLARKLAGDPN 108 (153)
Q Consensus 92 v~~lf~~l~~~i~~~~~ 108 (153)
+++++.+|.+.+.....
T Consensus 312 i~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 312 LPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999976543
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.80 E-value=4.1e-08 Score=77.83 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=54.1
Q ss_pred hhcCcEEEEEEeCCC----hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-c---ChHHHHHHHH---cCCceEE
Q 031782 15 SIHGQCAIIMFDVTA----RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KNLQYYE 83 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v---~~~~~~~~~~---~~~~~~e 83 (153)
+..+|++|+|+|.++ +.+++.+..| ... ...|+++|+||+|+.+.. . ..+..+++.. .++++++
T Consensus 102 ~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~ 176 (408)
T 1s0u_A 102 ASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIP 176 (408)
T ss_dssp CSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEE
T ss_pred HhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEE
Confidence 345699999999995 3455444332 222 235799999999997532 1 1223345443 2578999
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|+++++++|...+..
T Consensus 177 vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 177 ISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp C------CHHHHHHHHHHHSCC
T ss_pred eeCCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999987754
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.78 E-value=9.6e-09 Score=82.13 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=60.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-----CCC-cEEEEeeCCCCCCcc--------cChHHHHHH
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENI-PIVLCGNKVDVKNRQ--------VKAKQVTFH 74 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~-p~vlv~nK~Dl~~~~--------v~~~~~~~~ 74 (153)
..+..++..+|++|+|+|.++ .+|+....|......+. .++ ++++|+||+|+.+.. +..+...++
T Consensus 99 ~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~ 177 (435)
T 1jny_A 99 KNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFM 177 (435)
T ss_dssp HHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHH
Confidence 346678899999999999998 67775544332222211 144 689999999997521 112234566
Q ss_pred HHcC-----CceEEecCCCCCCcHHHHH
Q 031782 75 RKKN-----LQYYEISAKSNYNFEKPFL 97 (153)
Q Consensus 75 ~~~~-----~~~~e~Sa~~~~~v~~lf~ 97 (153)
...+ ++++++||++|.|+.+++.
T Consensus 178 ~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 178 RSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHcCCCcCCceEEEeecccCcccccccc
Confidence 6655 6799999999999986553
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.75 E-value=1e-08 Score=81.06 Aligned_cols=94 Identities=9% Similarity=-0.013 Sum_probs=65.9
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC-ccc----ChHHHHHHHHcC----
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQV----KAKQVTFHRKKN---- 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~-~~v----~~~~~~~~~~~~---- 78 (153)
..+..++..+|++|+|+|.++....+....| ..+... ++| +++|+||+|+.+ ... ..+..++++..+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4566788999999999999985433333333 344433 688 689999999974 211 123345666665
Q ss_pred -CceEEecCCCCCC----------cHHHHHHHHHHHhC
Q 031782 79 -LQYYEISAKSNYN----------FEKPFLYLARKLAG 105 (153)
Q Consensus 79 -~~~~e~Sa~~~~~----------v~~lf~~l~~~i~~ 105 (153)
++++++||++|.| +.++++.|...++.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999775 88899998887753
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.75 E-value=1.8e-08 Score=80.99 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=63.2
Q ss_pred chhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcC-CceEE
Q 031782 5 CFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYE 83 (153)
Q Consensus 5 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~-~~~~e 83 (153)
......+..|+++||++|+|+|.++. +.....|+..+... .++|+++|+||+|+.+... ....+. ..+ -..+.
T Consensus 90 ~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~ 163 (456)
T 4dcu_A 90 AQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYP 163 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEE
T ss_pred HHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEE
Confidence 34456778899999999999998763 44444555444433 3799999999999864210 111111 223 24689
Q ss_pred ecCCCCCCcHHHHHHHHHHHhC
Q 031782 84 ISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 84 ~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
+||++|.|+.+++..+...+..
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGGG
T ss_pred eecccccchHHHHHHHHhhccc
Confidence 9999999999999999987754
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.73 E-value=1.1e-08 Score=77.14 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=64.8
Q ss_pred hhhhhHhhhhcCcEEE-EEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-ChHH-HHHHHH--cC-Cc
Q 031782 7 NVLIILICSIHGQCAI-IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQ-VTFHRK--KN-LQ 80 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~i-lv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~-~~~~~~--~~-~~ 80 (153)
...++..|+++++.+| +|+|.++..+......|+..+... +.|+++|+||+|+.+... .... ...... .+ .+
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCC--CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEE
Confidence 3457788999999777 699998765544444455555433 789999999999975321 1111 110001 12 35
Q ss_pred eEEecCCCCCCcHHHHHHHHHHH
Q 031782 81 YYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 81 ~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++++||++|.|++++|.++.+..
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHHH
Confidence 78999999999999999998754
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.73 E-value=4.3e-08 Score=77.72 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=60.0
Q ss_pred hhhcCcEEEEEEeCCC----hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc----ChHHHHHHHH---cCCceE
Q 031782 14 CSIHGQCAIIMFDVTA----RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v----~~~~~~~~~~---~~~~~~ 82 (153)
.+..+|++|+|+|.++ +.+++.+..| ... ...|+++|+||+|+.+... ..+...++.. .+++++
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i 177 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTREHLMAL----QII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPII 177 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEE
T ss_pred hhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEE
Confidence 3456699999999985 3444444322 222 2357999999999975221 1122334433 357899
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++||++|.|+++++++|...+..
T Consensus 178 ~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 178 PISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EeeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987754
No 165
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.73 E-value=9.4e-09 Score=76.33 Aligned_cols=98 Identities=4% Similarity=-0.015 Sum_probs=61.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhh-HhhHHHHHHHHHhhcCCCcEEEEee-CCCCCCcccCh--------HHHHHHHHcCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKNL 79 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~p~vlv~n-K~Dl~~~~v~~--------~~~~~~~~~~~ 79 (153)
....+++++|++|+|+|+++... ...+..|+.++.......|.++|+| |+|+....+.. +...++...+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCC
Confidence 34558899999999999986221 1122233333321111345555555 99997532221 12335566553
Q ss_pred c---e--EEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 80 Q---Y--YEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 80 ~---~--~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
. + +++||++|.|++++|..|.+.+....
T Consensus 178 ~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 178 RICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 2 2 78999999999999999999987643
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.72 E-value=9.8e-09 Score=81.28 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=66.7
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC-ccc----ChHHHHHHHHcC---
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQV----KAKQVTFHRKKN--- 78 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~-~~v----~~~~~~~~~~~~--- 78 (153)
...+..++..+|++|+|+|.++... ....+|+..+... ++| +++|+||+|+.+ ... ..+...++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 3456778899999999999998643 3445555555544 688 889999999974 211 112345566655
Q ss_pred --CceEEecCCCCCC------------------cHHHHHHHHHHHh
Q 031782 79 --LQYYEISAKSNYN------------------FEKPFLYLARKLA 104 (153)
Q Consensus 79 --~~~~e~Sa~~~~~------------------v~~lf~~l~~~i~ 104 (153)
.+++++||++|.| +.++++.|...++
T Consensus 166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6799999999987 6777777776664
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.72 E-value=5.8e-08 Score=80.53 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=62.2
Q ss_pred hhHhhhhcCcEEEEEEeCCC---hhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-cc-------------ChH-H-
Q 031782 10 IILICSIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-------------KAK-Q- 70 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v-------------~~~-~- 70 (153)
++..+++.+|++|+|+|.++ +.++..+.. +... ++|+++++||+|+... .. ... .
T Consensus 86 ~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~ 159 (594)
T 1g7s_A 86 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ 159 (594)
T ss_dssp SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHHc--CCeEEEEecccccccccccccCCchHHHHHHhHHHHHH
Confidence 44567788999999999998 667665442 2233 7899999999999631 10 000 0
Q ss_pred ---------HHHHHHcC---------------CceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 71 ---------VTFHRKKN---------------LQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 71 ---------~~~~~~~~---------------~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.....+.+ ++++.+||++|.|+++++.+|...+.
T Consensus 160 ~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 01111111 37999999999999999999998775
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.71 E-value=4.6e-08 Score=78.14 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=59.4
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCC-cEEEEeeCCCCCCc--c----cChHHHHHHHHcC---
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNR--Q----VKAKQVTFHRKKN--- 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-p~vlv~nK~Dl~~~--~----v~~~~~~~~~~~~--- 78 (153)
..+..++..+|++|+|+|.++... ....+|+..+... +. |+++|+||+|+.+. . +..+...+++.++
T Consensus 119 ~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~ 195 (434)
T 1zun_B 119 RNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKP 195 (434)
T ss_dssp HHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCc
Confidence 345568899999999999998542 2334454444433 44 58999999999752 1 1122345666666
Q ss_pred --CceEEecCCCCCCcHHHH
Q 031782 79 --LQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 79 --~~~~e~Sa~~~~~v~~lf 96 (153)
++++++||++|.|+.++|
T Consensus 196 ~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 196 TTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp SEEEEEECCTTTCTTTSSCC
T ss_pred cCceEEEEeccCCCCccccc
Confidence 679999999999998854
No 169
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.69 E-value=7.2e-08 Score=77.21 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=57.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhh---Hh---hHHHHHHHHHhhcCCCc-EEEEeeCCCCCCccc--------ChHHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV--------KAKQVT 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~v--------~~~~~~ 72 (153)
...+..++.+||++|+|+|.++... |. +..+.+..+... ++| +++|+||+|+..... ..+...
T Consensus 109 ~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~ 186 (439)
T 3j2k_7 109 VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 186 (439)
T ss_pred HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccchHHHHHHHHHHHHHH
Confidence 4456677889999999999997532 22 222222223222 677 999999999853211 112234
Q ss_pred HHHHcC------CceEEecCCCCCCcHHHHH
Q 031782 73 FHRKKN------LQYYEISAKSNYNFEKPFL 97 (153)
Q Consensus 73 ~~~~~~------~~~~e~Sa~~~~~v~~lf~ 97 (153)
+++..+ ++++++||++|.|+.+++.
T Consensus 187 ~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 187 FLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 454544 4699999999999998655
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.69 E-value=6.1e-09 Score=84.04 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=55.3
Q ss_pred hhHhhhhcCcEEEEEEeCCCh---hhHhhHHHHHHHHHhh-cCCCc-EEEEeeCCCCCCccc--------ChHHHHHHHH
Q 031782 10 IILICSIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQV--------KAKQVTFHRK 76 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~---~s~~~~~~~~~~i~~~-~~~~p-~vlv~nK~Dl~~~~v--------~~~~~~~~~~ 76 (153)
.+..++..+|++|+|+|.++. .+|....+|...+... ..++| +++|+||+|+.+... ..+...++..
T Consensus 137 ~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~ 216 (467)
T 1r5b_A 137 NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 216 (467)
T ss_dssp -----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHH
Confidence 445677899999999999985 3554333333332221 13677 999999999964211 1123455555
Q ss_pred c-------CCceEEecCCCCCCcHHHH
Q 031782 77 K-------NLQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 77 ~-------~~~~~e~Sa~~~~~v~~lf 96 (153)
. +++++++||++|.|+.+++
T Consensus 217 ~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 217 VAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred hcCCCccCCceEEeccccccccccccc
Confidence 5 3569999999999998765
No 171
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.69 E-value=7.9e-08 Score=77.79 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=53.3
Q ss_pred hhhhhHhhhhcCcEEEEEEeCCChhhHhhH-----HHHHHHHHhhcCCCcEEEEeeCCCCCC-ccc-ChH----HHHHHH
Q 031782 7 NVLIILICSIHGQCAIIMFDVTARLTYKNV-----PTWHRDLCRVCENIPIVLCGNKVDVKN-RQV-KAK----QVTFHR 75 (153)
Q Consensus 7 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v-~~~----~~~~~~ 75 (153)
....+..+++++|++|+|+|.++..++..+ ..+...+.....-.|+++|+||+|+.+ +.. ..+ ...+..
T Consensus 124 f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~ 203 (483)
T 3p26_A 124 FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLV 203 (483)
T ss_dssp GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHH
Confidence 345677889999999999999986543221 111112222222356999999999975 111 111 223333
Q ss_pred Hc-----CCceEEecCCCCCCcHH
Q 031782 76 KK-----NLQYYEISAKSNYNFEK 94 (153)
Q Consensus 76 ~~-----~~~~~e~Sa~~~~~v~~ 94 (153)
.. +++++++||++|.|+++
T Consensus 204 ~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 204 DIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HcCCCcccceEEEEeeecCCCccc
Confidence 33 35789999999999985
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.68 E-value=4.7e-08 Score=76.70 Aligned_cols=92 Identities=4% Similarity=-0.064 Sum_probs=65.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcE-EEEee-CCCCCCccc-C---hHHHHHHHHc---CC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQV-K---AKQVTFHRKK---NL 79 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~-vlv~n-K~Dl~~~~v-~---~~~~~~~~~~---~~ 79 (153)
.....+++.+|++|+|+| +. ..+.+..+|+..+... ++|. ++++| |+|+ +... . .+...++... .+
T Consensus 75 ~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~ 149 (370)
T 2elf_A 75 KSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDW 149 (370)
T ss_dssp HHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTC
T ss_pred HHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCce
Confidence 344567799999999999 53 4555566666665554 6777 88899 9999 5321 1 1223344333 36
Q ss_pred ceEE--ecCCC---CCCcHHHHHHHHHHHhC
Q 031782 80 QYYE--ISAKS---NYNFEKPFLYLARKLAG 105 (153)
Q Consensus 80 ~~~e--~Sa~~---~~~v~~lf~~l~~~i~~ 105 (153)
++++ +||++ +.|+++++..|...+..
T Consensus 150 ~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 150 ECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp EEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 8999 99999 99999999999887753
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.65 E-value=4.1e-08 Score=82.81 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=69.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cCh-----------HHHH---
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-----------KQVT--- 72 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~-----------~~~~--- 72 (153)
..++..|+++||++|+|+|.++..+......|...+... +.|+++|+||+|+.... +.. ....
T Consensus 191 ~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~ 268 (695)
T 2j69_A 191 NELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFN 268 (695)
T ss_dssp HHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHH
Confidence 456788999999999999999887777776666555433 67899999999986421 111 0101
Q ss_pred --HHHH--------cCCceEEecCC--------------CCCCcHHHHHHHHHHHhC
Q 031782 73 --FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 --~~~~--------~~~~~~e~Sa~--------------~~~~v~~lf~~l~~~i~~ 105 (153)
+... .+.+++.|||+ ++.|+++++..|.+.+..
T Consensus 269 ~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1111 12368999999 999999999999988754
No 174
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.60 E-value=9.6e-09 Score=80.35 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=55.0
Q ss_pred hhhhcCcEE-----------EEEEeCCC-hhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-cccCh---HHHHHHH
Q 031782 13 ICSIHGQCA-----------IIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---KQVTFHR 75 (153)
Q Consensus 13 ~~~~~ad~~-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~---~~~~~~~ 75 (153)
.|+++++++ +++|++++ ..++..+. .|+..+ ..++|+|+|+||+|+.. +.+.. ....++.
T Consensus 128 ~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~ 204 (361)
T 2qag_A 128 RYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIE 204 (361)
T ss_dssp HHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 777766554 36666665 45677665 455444 24799999999999975 33322 3445666
Q ss_pred HcCCceEEecCCCCCCcHHHHHHHHHHHhCCC
Q 031782 76 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 76 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 107 (153)
.++++++++||+++.| ++.|..+.+.+....
T Consensus 205 ~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 205 EHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp CC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 7789999999999999 888888888886543
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.59 E-value=1.6e-07 Score=78.91 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=38.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
..+..+++.+|++++|+|.++...... ..|+..+... ++|+++|+||+|+.
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCchh
Confidence 567789999999999999987543332 2444444443 79999999999986
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.58 E-value=1.2e-07 Score=83.58 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=66.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCc-cc----ChHHHHHHHHcC----
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QV----KAKQVTFHRKKN---- 78 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~-~v----~~~~~~~~~~~~---- 78 (153)
..+..++..+|++|+|+|.++... .+..+|+..+... ++| +|+|+||+|+.+. .. ..+...++...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 445667889999999999998643 3344555555544 688 7899999999742 11 123345666665
Q ss_pred -CceEEecCCCC--------CCcHHHHHHHHHHHh
Q 031782 79 -LQYYEISAKSN--------YNFEKPFLYLARKLA 104 (153)
Q Consensus 79 -~~~~e~Sa~~~--------~~v~~lf~~l~~~i~ 104 (153)
++++++||++| .|+.++++.|...+.
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 58999999999 468888888887664
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1e-07 Score=67.08 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=44.4
Q ss_pred hhHhhhhc----CcEEEEEEeCC-ChhhHhhHHHHHHHHHhhc-----CCCcEEEEeeCCCCCC
Q 031782 10 IILICSIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN 63 (153)
Q Consensus 10 ~~~~~~~~----ad~~ilv~d~~-~~~s~~~~~~~~~~i~~~~-----~~~p~vlv~nK~Dl~~ 63 (153)
....|+++ +|++|+|||++ +..+|..+..|+..+.... .++|+++|+||+|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 44556665 99999999999 8999999988887776532 4799999999999975
No 178
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.56 E-value=9.9e-08 Score=76.81 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=57.1
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh---hHh---hHHHHHHHHHhhcCCCc-EEEEeeCCCCCC--cc----cChHHHHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--RQ----VKAKQVTFH 74 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~--~~----v~~~~~~~~ 74 (153)
...+..++..+|++|+|+|.++.. +|+ ...+++..+... ++| +++|+||+|+.+ .. +..+...++
T Consensus 99 ~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l 176 (458)
T 1f60_A 99 IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFI 176 (458)
T ss_dssp HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEEEccccccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999999752 442 222223233322 565 899999999973 11 112233555
Q ss_pred HHcC-----CceEEecCCCCCCcHHH
Q 031782 75 RKKN-----LQYYEISAKSNYNFEKP 95 (153)
Q Consensus 75 ~~~~-----~~~~e~Sa~~~~~v~~l 95 (153)
...+ ++++++||++|.|+.++
T Consensus 177 ~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 177 KKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHcCCCccCceEEEeecccCcCcccc
Confidence 5555 68999999999998754
No 179
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.55 E-value=2.3e-08 Score=81.37 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=59.4
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc---ccChHH---HHHHHHcC--Cce
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---QVKAKQ---VTFHRKKN--LQY 81 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~---~v~~~~---~~~~~~~~--~~~ 81 (153)
++..++..+|++|+|+|.++....+....| ..+.. .++|+++++||+|+.+. .+..+. ..++..++ +++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 345678899999999999874322222222 23333 37899999999999641 111110 01122233 689
Q ss_pred EEecCCCCCCcHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~ 101 (153)
+++||++|.|++++|++|..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 99999999999999999874
No 180
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.51 E-value=6.1e-08 Score=72.69 Aligned_cols=82 Identities=16% Similarity=0.050 Sum_probs=60.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 87 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~ 87 (153)
.....+.++|++++|+|..++.+... +. |+ ++|.++|.||+|+.+.........+.+..|+++ .+||+
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~ 83 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHK 83 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECC
Confidence 45677889999999999998866543 22 21 689999999999975322122234455567888 99999
Q ss_pred CCCCcHHHHHHHHH
Q 031782 88 SNYNFEKPFLYLAR 101 (153)
Q Consensus 88 ~~~~v~~lf~~l~~ 101 (153)
++.|+++++..+..
T Consensus 84 ~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 84 GEPRKVLLKKLSFD 97 (262)
T ss_dssp TSCHHHHHHHHCCC
T ss_pred CCcCHHHHHHHHHH
Confidence 99999998877654
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.47 E-value=4e-08 Score=78.29 Aligned_cols=94 Identities=11% Similarity=0.115 Sum_probs=52.1
Q ss_pred hhhHhhhhcCcEEEEEEeCCCh-hhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC-cccC---hHHHHHHHHcCCceE
Q 031782 9 LIILICSIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYY 82 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~---~~~~~~~~~~~~~~~ 82 (153)
.+.+.++.++++.+++|..+.. .++.... .|+..+. .++++|+|+||+|+.. +.+. .+...++..++++++
T Consensus 128 ~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~ 204 (418)
T 2qag_C 128 RVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY 204 (418)
T ss_dssp C-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3566778887766666666543 4566655 5776664 3789999999999875 3333 234567788899999
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++|++++.+++++|..+...++-
T Consensus 205 ~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 205 EFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp CCC-----------------CCE
T ss_pred eCCCCCCcCHHHHHHHHHhhCCc
Confidence 99999999999999998887754
No 182
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.47 E-value=9.4e-08 Score=71.72 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=48.7
Q ss_pred CcEEEEEEeCCChhhHhhH-HHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccCh---HHHHHHHHcCCceEEecCCCCCCc
Q 031782 18 GQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA---KQVTFHRKKNLQYYEISAKSNYNF 92 (153)
Q Consensus 18 ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~---~~~~~~~~~~~~~~e~Sa~~~~~v 92 (153)
+|+++++++.+.. ++... ..++..+.. ++|+++|+||+|+... .... .........+++++.+||++++|+
T Consensus 116 ~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~ 191 (274)
T 3t5d_A 116 VQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE 191 (274)
T ss_dssp CCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred eeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence 7899999987753 22222 234444443 6999999999998642 1111 123445567899999999999999
Q ss_pred HHHHHHHHHHHhC
Q 031782 93 EKPFLYLARKLAG 105 (153)
Q Consensus 93 ~~lf~~l~~~i~~ 105 (153)
++++.+|...++-
T Consensus 192 ~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 192 NKLVKKIKDRLPL 204 (274)
T ss_dssp ---CHHHHHTCSE
T ss_pred HHHHHHHhcCCCc
Confidence 9999999887753
No 183
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=6.6e-08 Score=74.12 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=60.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc----ChHHHHHHHHcCCceEEe
Q 031782 10 IILICSIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v----~~~~~~~~~~~~~~~~e~ 84 (153)
+.+....++|.+++|+|..++. +...+..++..... .++|.++|.||+||.+... ......+....|++++.+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 3445678999999999999765 44445555543333 3799999999999976422 112234555668899999
Q ss_pred cCCCCCCcHHHHH
Q 031782 85 SAKSNYNFEKPFL 97 (153)
Q Consensus 85 Sa~~~~~v~~lf~ 97 (153)
||.++.|+++++.
T Consensus 157 sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 157 SSKDQDSLADIIP 169 (307)
T ss_dssp CHHHHTTCTTTGG
T ss_pred ecCCCCCHHHHHh
Confidence 9998888776554
No 184
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.46 E-value=4.8e-07 Score=66.26 Aligned_cols=94 Identities=9% Similarity=0.070 Sum_probs=62.4
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCCC-cccC-------hHHHHHHHHcCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVK-------AKQVTFHRKKNL 79 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~~-~~v~-------~~~~~~~~~~~~ 79 (153)
...+++++|++|+|+|+++... ....|+..+.... ...|+++|+||+|+.. +.+. .....+++.++.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 3445678899999999975432 1223443333221 2469999999999864 2222 235577888888
Q ss_pred ceEEecCCCC-----CCcHHHHHHHHHHHhCC
Q 031782 80 QYYEISAKSN-----YNFEKPFLYLARKLAGD 106 (153)
Q Consensus 80 ~~~e~Sa~~~-----~~v~~lf~~l~~~i~~~ 106 (153)
.++.+++..+ .++.++|..+...+...
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8888877654 68999999998888654
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.45 E-value=1.2e-07 Score=73.79 Aligned_cols=85 Identities=7% Similarity=0.008 Sum_probs=58.8
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChHHHHHHHH----------cCCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRK----------KNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~~----------~~~~~~ 82 (153)
.+..+|++++|+|.+..+.+..+..+ + .+.|.++|+||+|+.+.. .......+... ++.+++
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~~~l~~~---~----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 261 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQLQGIKKG---V----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVL 261 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTTTTCCTT---S----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEE
T ss_pred HHHhCCEEEEEECCCCCccHHHHHHh---H----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceE
Confidence 45889999999998765544332211 1 146899999999986421 11111222221 257899
Q ss_pred EecCCCCCCcHHHHHHHHHHHhC
Q 031782 83 EISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.+||++|.|+++++.+|.+.+..
T Consensus 262 ~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 262 TMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988854
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.43 E-value=8.6e-07 Score=74.71 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=42.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
...+..+++.+|++|+|+|.++..++.....|.. +... ++|+++|+||+|+..
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 3456788999999999999998877777766654 3333 799999999999864
No 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.42 E-value=2.4e-07 Score=66.67 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=56.1
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccCh-HHHHHHHHc--CCceEEecCCCCCC
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK--NLQYYEISAKSNYN 91 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~-~~~~~~~~~--~~~~~e~Sa~~~~~ 91 (153)
..++.+++|+|.++... ....+... . +.|.++|+||+|+.+. .... +....++.. +.+++++||++|.|
T Consensus 128 ~~~~~~i~vvd~~~~~~--~~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDD--VVEKHPEI---F--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKG 200 (221)
T ss_dssp CSCSEEEEEEEGGGCTT--HHHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBT
T ss_pred cccCcEEEEEeCCCcch--hhhhhhhh---h--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCC
Confidence 35788889999876431 11111111 2 4789999999998642 1222 233444443 37899999999999
Q ss_pred cHHHHHHHHHHHhC
Q 031782 92 FEKPFLYLARKLAG 105 (153)
Q Consensus 92 v~~lf~~l~~~i~~ 105 (153)
++++|.+|...+..
T Consensus 201 i~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 201 FEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 188
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.8e-07 Score=77.77 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=54.8
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChh---hHhhHHHH---HHHHHhhcCCCcEEEEeeCCCCCCc-cc-----ChHHHHHHH
Q 031782 8 VLIILICSIHGQCAIIMFDVTARL---TYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNR-QV-----KAKQVTFHR 75 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~---s~~~~~~~---~~~i~~~~~~~p~vlv~nK~Dl~~~-~v-----~~~~~~~~~ 75 (153)
...+..+++++|++|+|+|.++.. +|.....+ +..+... .-.++++|+||+|+.+. .. ..+...+..
T Consensus 259 ~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~ 337 (611)
T 3izq_1 259 VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLV 337 (611)
T ss_dssp HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 455667889999999999999742 22111122 2222222 22359999999999751 11 111223444
Q ss_pred HcC-----CceEEecCCCCCCcHHH
Q 031782 76 KKN-----LQYYEISAKSNYNFEKP 95 (153)
Q Consensus 76 ~~~-----~~~~e~Sa~~~~~v~~l 95 (153)
..+ +++++|||++|.|+.++
T Consensus 338 ~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 338 DIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhcccccCccEEeeecccCCCcccc
Confidence 443 57999999999999876
No 189
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.41 E-value=6e-07 Score=68.14 Aligned_cols=100 Identities=6% Similarity=0.036 Sum_probs=65.0
Q ss_pred cchhhhhhHhhhhcCcEEEEEEeCCChhhH-hhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHH----cC
Q 031782 4 SCFNVLIILICSIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN 78 (153)
Q Consensus 4 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~----~~ 78 (153)
+......+..|++++|++++|+|.++.... .....+...+.. .+.|+++|+||+|+...... ...+... .+
T Consensus 154 ~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~ 229 (315)
T 1jwy_B 154 EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLT 229 (315)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCT
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCC
Confidence 345677889999999999999998543211 222233333433 37899999999999753211 1122221 22
Q ss_pred CceEEecCC---C---CCCcHHHHHHHHHHHhCCC
Q 031782 79 LQYYEISAK---S---NYNFEKPFLYLARKLAGDP 107 (153)
Q Consensus 79 ~~~~e~Sa~---~---~~~v~~lf~~l~~~i~~~~ 107 (153)
..++.+|+. + +.|+.+++..+...+....
T Consensus 230 ~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 230 LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 556777655 4 7889999999998887643
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.35 E-value=1.3e-06 Score=62.21 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=59.0
Q ss_pred hcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCCcc---c-ChHHHHHHHHcC--CceEEecCC
Q 031782 16 IHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---V-KAKQVTFHRKKN--LQYYEISAK 87 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~---v-~~~~~~~~~~~~--~~~~e~Sa~ 87 (153)
..++++++++|+++..++.. +..|+. . .+.|+++|+||+|+.... . ......++...+ +.++.+||+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 47899999999998654432 223332 2 278999999999986421 1 112334444443 567899999
Q ss_pred CCCCcHHHHHHHHHHHhC
Q 031782 88 SNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 88 ~~~~v~~lf~~l~~~i~~ 105 (153)
++.|+++++..|.+.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTBSHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887644
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.33 E-value=6.6e-07 Score=68.23 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=48.6
Q ss_pred EEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccC---hHHHHHHHHcCCceEEecCCCCCCcHHHH
Q 031782 21 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 21 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~---~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 96 (153)
++++.+.+. .+++.+.. ..+.....+.++++|+||.|+.. +++. .+..++++.++++++++||+++ |++++|
T Consensus 130 ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 130 CFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp EEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------C
T ss_pred eeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHH
Confidence 444444332 23444431 22333334679999999999975 2221 2356788889999999999999 999999
Q ss_pred HHHHHHHhCCC
Q 031782 97 LYLARKLAGDP 107 (153)
Q Consensus 97 ~~l~~~i~~~~ 107 (153)
..+++.+....
T Consensus 206 ~~l~~~i~~~~ 216 (301)
T 2qnr_A 206 KEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhcCC
Confidence 99999997654
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.32 E-value=1.3e-07 Score=73.72 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=63.7
Q ss_pred hhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCc-ccChH-HHHHHHHcCCceE
Q 031782 6 FNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 6 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~-~v~~~-~~~~~~~~~~~~~ 82 (153)
.+..+...|++++|++|+|+|.++.+... ..|+..+.... .+.|+++|+||+|+.+. ..... ...+....+..|+
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWV 238 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeE
Confidence 34778899999999999999987654332 23444444332 36899999999998752 22222 2233445568899
Q ss_pred EecCCCCCCcHHHHHHHH
Q 031782 83 EISAKSNYNFEKPFLYLA 100 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~ 100 (153)
.+|+.++.++++.+..+.
T Consensus 239 ~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 239 GVVNRSQADINKNVDMIA 256 (360)
T ss_dssp EECCCCHHHHHTTCCHHH
T ss_pred EEEECChHHhccCCCHHH
Confidence 999999988877655543
No 193
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.31 E-value=1.9e-06 Score=63.78 Aligned_cols=88 Identities=5% Similarity=-0.007 Sum_probs=61.0
Q ss_pred hcCcEEEEEEeCCChhhHhhHH-HHHHHHHhhc----CCCcEEEEeeCCCCCCcccC--------hHHHHHHHHcCCceE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC----ENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQYY 82 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~----~~~p~vlv~nK~Dl~~~~v~--------~~~~~~~~~~~~~~~ 82 (153)
+++|++|+|+|+++. .... .++..+.... .+.|+++++||+|+.+.... .....+.+.++..+.
T Consensus 104 ~~~d~il~V~d~~~~---~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~ 180 (247)
T 3lxw_A 104 PGPHALLLVTQLGRF---TAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVC 180 (247)
T ss_dssp TCCSEEEEEEETTBC---CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEEEeCCCC---CHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEE
Confidence 899999999999852 2221 2233333321 26899999999999753221 224567777887777
Q ss_pred EecCCC-----CCCcHHHHHHHHHHHhCC
Q 031782 83 EISAKS-----NYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 83 e~Sa~~-----~~~v~~lf~~l~~~i~~~ 106 (153)
.+++.. +.||.+++..+.+.+...
T Consensus 181 ~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 181 AFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 666654 579999999999988754
No 194
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.29 E-value=4.5e-06 Score=70.40 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.++..++.....|.. +... ++|+++|+||+|+..
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKLG 141 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence 346778999999999999998777776666653 4433 799999999999864
No 195
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.26 E-value=5.4e-06 Score=70.00 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=39.7
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.++.........|.. .... ++|+++|+||+|+..
T Consensus 97 ~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~~--~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 97 IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANKY--KVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHHc--CCCEEEEEeCCCccc
Confidence 456778999999999999998766555555532 3332 799999999999864
No 196
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.24 E-value=3.6e-06 Score=65.78 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=56.9
Q ss_pred hhcCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccCh---HHHHHHHHcCCceEEecCCCCC
Q 031782 15 SIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSNY 90 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~---~~~~~~~~~~~~~~e~Sa~~~~ 90 (153)
..++|.+++|.... +. +...+..|+-..... ++|.++|.||+||.+..... .........|++++.+||.++.
T Consensus 128 ~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~ 204 (358)
T 2rcn_A 128 AANIDQIVIVSAIL-PELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQD 204 (358)
T ss_dssp EECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTB
T ss_pred HhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCc
Confidence 57899999987764 43 444555665444333 78899999999997543211 1223345668899999999999
Q ss_pred CcHHHHHHH
Q 031782 91 NFEKPFLYL 99 (153)
Q Consensus 91 ~v~~lf~~l 99 (153)
|++++...+
T Consensus 205 gl~~L~~~~ 213 (358)
T 2rcn_A 205 GLKPLEEAL 213 (358)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHhc
Confidence 999876543
No 197
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.23 E-value=3e-07 Score=76.26 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=44.8
Q ss_pred hHhhhhcCcEEEEEEeCCChh---hH---hhHHHHHHHHHhhcCCCc-EEEEeeCCCCCC--cccC----hHHHHHH-HH
Q 031782 11 ILICSIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN--RQVK----AKQVTFH-RK 76 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~--~~v~----~~~~~~~-~~ 76 (153)
+..++..+|++|+|+|.++.. .+ ......+..+... ++| +|+|+||+|+.+ .... .+...+. ..
T Consensus 272 ~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~ 349 (592)
T 3mca_A 272 MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKM 349 (592)
T ss_dssp CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHh
Confidence 456778999999999998642 22 1122222223332 565 999999999864 1111 1122333 33
Q ss_pred cCC-----ceEEecCCCCCCcH
Q 031782 77 KNL-----QYYEISAKSNYNFE 93 (153)
Q Consensus 77 ~~~-----~~~e~Sa~~~~~v~ 93 (153)
.++ +++++||++|.|+.
T Consensus 350 ~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 350 VGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCGGGEEEEEECSSSCSSSC
T ss_pred hCCCccceEEEEEecccCcccc
Confidence 454 69999999999998
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.23 E-value=2.3e-06 Score=63.11 Aligned_cols=89 Identities=16% Similarity=0.031 Sum_probs=54.6
Q ss_pred hhhcCcEEEEEEeCCCh---hhHhhHHHHH-HHHHhhcCCCcEEEEeeCCCCCCcccChHHH-----------H------
Q 031782 14 CSIHGQCAIIMFDVTAR---LTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-----------T------ 72 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~---~s~~~~~~~~-~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~-----------~------ 72 (153)
++.. +++|+++|.+.. .++.....+. ..... .+.|+++|+||+|+.......+.. .
T Consensus 135 ~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 211 (262)
T 1yrb_A 135 NLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPS 211 (262)
T ss_dssp TSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCS
T ss_pred HHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhcccc
Confidence 3455 788888887532 2222211111 11112 268999999999986421100000 1
Q ss_pred -----------HHHHcC--CceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 73 -----------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 73 -----------~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
++..++ .+++++||+++.|+++++.+|.+.+..
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 212 MQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 123433 479999999999999999999987753
No 199
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.22 E-value=8.1e-06 Score=66.84 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=36.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+..+++.+|++|+|+|.++..... ...++..... .++|+++|+||+|+..
T Consensus 97 ~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 97 EDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp HHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred HHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 35667899999999999998753221 1222222322 3799999999999864
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.12 E-value=2e-06 Score=62.01 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=42.8
Q ss_pred CCcEEEEeeCCCCCCc-ccCh-HHHHHHHHc--CCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 49 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~-~v~~-~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
..|.++|+||+|+.+. .+.. +...+++.. +.+++++||++|.|++++|.+|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3566999999998642 2232 244555544 5789999999999999999999987743
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=62.73 Aligned_cols=85 Identities=8% Similarity=0.009 Sum_probs=52.4
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcc-cChHHHHHHH----------HcCCce
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHR----------KKNLQY 81 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~-v~~~~~~~~~----------~~~~~~ 81 (153)
.....+|++++|+|.+.......+.. .+ -..|.++|+||+|+.+.. .......+.. .++.++
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~v 255 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKV 255 (349)
T ss_dssp HHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEE
T ss_pred hHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceE
Confidence 44678999999999987543222211 11 146889999999985321 1011112211 124568
Q ss_pred EEecCCCCCCcHHHHHHHHHHHh
Q 031782 82 YEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+.+||++|.|+++++.+|.+.+.
T Consensus 256 i~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 256 IRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988774
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.04 E-value=9.8e-06 Score=62.69 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=53.1
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCc-ccChHHHHHH---HHc-------CCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFH---RKK-------NLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~-~v~~~~~~~~---~~~-------~~~~~ 82 (153)
+.+.+|++++|+|.+..+.+..+.. .. . +.|.++|+||+|+.+. ........+. ... ..+++
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 238 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQGIKK---GL--M--EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 238 (341)
T ss_dssp HHTTCSEEEEEECC------CCCCH---HH--H--HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred HHHhCCEEEEEEeCCccHHHHHHHH---hh--h--cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEE
Confidence 4678999999999986544332211 11 1 4678999999998642 1111111221 121 35689
Q ss_pred EecCCCCCCcHHHHHHHHHHHh
Q 031782 83 EISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
.+||++|.|+++++..|...+.
T Consensus 239 ~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 239 TCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998774
No 203
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.91 E-value=2.7e-06 Score=67.33 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHH---HHHcCCceEEecCCCCCCcHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTF---HRKKNLQYYEISAKSNYNFEKPFL 97 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~---~~~~~~~~~e~Sa~~~~~v~~lf~ 97 (153)
.+|+++|+||+|+... .....+ +...+..++.+||+.+.++.+++.
T Consensus 214 ~kP~i~v~NK~D~~~~---~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD---EQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH---HHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch---HHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 4899999999998621 112222 222367899999999988876544
No 204
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.88 E-value=3.3e-06 Score=65.53 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=55.0
Q ss_pred hhhHhhhhcCcEEEEEE-eCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCccc-ChHHHH---HHHHcC-CceE
Q 031782 9 LIILICSIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYY 82 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v-~~~~~~---~~~~~~-~~~~ 82 (153)
.+...|+++++.+|+++ |.+....-.....++..+.. .+.|+++|+||+|+.+... ...... +....+ ..++
T Consensus 158 ~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 158 DMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEE
Confidence 46778888877666654 54432111122224444433 3789999999999975321 111110 000122 3567
Q ss_pred EecCCCCCCcHHHHHHHHH
Q 031782 83 EISAKSNYNFEKPFLYLAR 101 (153)
Q Consensus 83 e~Sa~~~~~v~~lf~~l~~ 101 (153)
.+||+++.|+++++.++..
T Consensus 236 ~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHH
T ss_pred eCCcccccccccHHHHHHH
Confidence 8999999999999999976
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.68 E-value=0.00022 Score=58.57 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=35.7
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
...++-+|++|+|+|....---+....|. ....+ ++|.+++.||+|...
T Consensus 118 ~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 118 YRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp HHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSCC
T ss_pred HHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh--CCceEEEEecccchh
Confidence 34567899999999998754444444563 33334 799999999999754
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.67 E-value=3.1e-05 Score=65.90 Aligned_cols=89 Identities=9% Similarity=0.038 Sum_probs=59.1
Q ss_pred hhHhhh-hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHH------cC-Cce
Q 031782 10 IILICS-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQY 81 (153)
Q Consensus 10 ~~~~~~-~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~------~~-~~~ 81 (153)
+...|+ ..+|++++|+|.+....-.+...++..+... +.|+++|.||+|+........ .+... .+ ..+
T Consensus 179 lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~--~il~~~~~~l~lg~~~V 254 (772)
T 3zvr_A 179 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDAR--DVLENKLLPLRRGYIGV 254 (772)
T ss_dssp HHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTTSSCTTCCSH--HHHTTCSSCCSSCEEEC
T ss_pred HHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcccCCcchhhH--HHHHHHhhhhhccCCce
Confidence 445566 4789999999998643333322344445443 789999999999975322111 11111 12 346
Q ss_pred EEecCCCCCCcHHHHHHHHHH
Q 031782 82 YEISAKSNYNFEKPFLYLARK 102 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~ 102 (153)
+.+||++|.|+++++..+...
T Consensus 255 V~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 255 VNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CCCCCEESSSSEEHHHHHHHH
T ss_pred EEecccccccchhHHHHHHHH
Confidence 789999999999999999874
No 207
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.46 E-value=7.2e-05 Score=61.47 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=43.4
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..++..|+..+|++|+|+|.++.........|+..+... +.|+++|+||+|+..
T Consensus 179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE 232 (550)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence 366788999999999999998865555666777766554 579999999999875
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.30 E-value=0.00034 Score=58.47 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
...++-+|++|+|+|....-.-+....|. ....+ ++|.+++.||.|...
T Consensus 85 ~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 85 YRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH--TCSCEECCEECCSSS
T ss_pred HHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc--CCCeEEEEecccccc
Confidence 34567899999999998753333333454 33334 799999999999753
No 209
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.19 E-value=0.00031 Score=52.18 Aligned_cols=48 Identities=4% Similarity=-0.036 Sum_probs=35.7
Q ss_pred hhcCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcC-C--CcEEEEeeCCCCCC
Q 031782 15 SIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE-N--IPIVLCGNKVDVKN 63 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~-~--~p~vlv~nK~Dl~~ 63 (153)
++++|++++|+|++.. ++... ..|+..+...+. + .|+++|+||+|+..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3589999999999763 45544 367777766542 2 69999999999864
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.18 E-value=0.00078 Score=51.97 Aligned_cols=84 Identities=7% Similarity=0.043 Sum_probs=50.8
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCC-cccCh-HHHHHHHH----------cCCce
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRK----------KNLQY 81 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~-~~v~~-~~~~~~~~----------~~~~~ 81 (153)
....+|.+++|+|.+..+....+..+ +. ..+.+++.||+|+.. ..... ....+... +..++
T Consensus 165 v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~v 237 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPV 237 (337)
T ss_dssp HHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCE
T ss_pred HHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCE
Confidence 45789999999998654322111111 11 235677779999743 21111 12223221 13568
Q ss_pred EEecCCCCCCcHHHHHHHHHHHh
Q 031782 82 YEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 82 ~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
+.+||+++.|+++++..|.+...
T Consensus 238 l~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 238 VTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 211
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.12 E-value=0.00035 Score=60.14 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=41.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
..+..+++.+|++|+|+|.++..+++....|..... .++|+++|+||+|+.
T Consensus 113 ~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 113 SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 356788999999999999999888887776754332 278999999999986
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.00 E-value=0.0041 Score=52.50 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=34.7
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
...++-+|++|+|+|....-.-+....|..... . ++|.+++.||+|..
T Consensus 103 ~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~--~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 103 ERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y--GVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H--TCCEEEEEECSSST
T ss_pred HHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c--CCCeEEEEcccccc
Confidence 345678999999999987543333444544333 3 79999999999975
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.97 E-value=0.00086 Score=52.45 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=32.1
Q ss_pred CCcEEEEeeCCCCC--C---cccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 49 NIPIVLCGNKVDVK--N---RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~--~---~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
..|+++++||.|.. + .........+++..+.+++.+||++..++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHh
Confidence 47999999999742 2 11122345677888899999999885444433
No 214
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.87 E-value=0.00094 Score=49.38 Aligned_cols=45 Identities=2% Similarity=-0.094 Sum_probs=34.2
Q ss_pred cCcEEEEEEeCCChhhHhhH-HHHHHHHHhhcC---CCcEEEEeeCCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 62 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~---~~p~vlv~nK~Dl~ 62 (153)
++|++++|++++... +... ..|+..+..... ..|+++|+||+|+.
T Consensus 116 ~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 116 TIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred CCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 899999999998754 5444 367777776542 24899999999986
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.81 E-value=0.009 Score=46.61 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=28.4
Q ss_pred CCcEEEEeeCCCCCC--cccChHHHHHHHHcCCceEEecCCC
Q 031782 49 NIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKS 88 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~--~~v~~~~~~~~~~~~~~~~e~Sa~~ 88 (153)
..|+++++||.|..- .........++...+..++.+||+.
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 589999999998642 1112234567777788999999764
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.57 E-value=0.35 Score=37.78 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=34.2
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc---CCCcEEEEeeCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 62 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~p~vlv~nK~Dl~ 62 (153)
....++.||++++|+|.+++. ........++.... ...|.+++.||.|..
T Consensus 143 ~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 143 VIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 345678999999999999863 33333333443331 467888999999964
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.97 E-value=0.29 Score=39.76 Aligned_cols=78 Identities=8% Similarity=0.000 Sum_probs=48.8
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcE-EEEeeCCCCCCcccChHHHHHHHHcCCce--------------
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVTFHRKKNLQY-------------- 81 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~-vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~-------------- 81 (153)
.+|.+++|+|.+.... .+ .....+.. .+|+ ++|.||+|...+. ..........++++
T Consensus 213 ~pd~vllVvDa~~g~~--~~-~~a~~~~~---~~~i~gvVlNK~D~~~~~--g~~l~~~~~~g~PI~fig~ge~~~dl~~ 284 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CE-AQAKAFKD---KVDVASVIVTKLDGHAKG--GGALSAVAATKSPIIFIGTGEHIDDFEP 284 (504)
T ss_dssp CCSEEEEEEETTCCTT--HH-HHHHHHHH---HHCCCCEEEECTTSCCCC--THHHHHHHHHCCCEEEEECSSSTTCEEC
T ss_pred cCceEEEEEecccccc--HH-HHHHHHHh---hcCceEEEEeCCccccch--HHHHHHHHHhCCCeEEeccccchhhhhc
Confidence 7899999999986432 11 12222322 2564 8899999976321 11223334444443
Q ss_pred ----EEecCCCCCC-cHHHHHHHHHH
Q 031782 82 ----YEISAKSNYN-FEKPFLYLARK 102 (153)
Q Consensus 82 ----~e~Sa~~~~~-v~~lf~~l~~~ 102 (153)
+.+|+..|.| +.++++++...
T Consensus 285 f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 285 FKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3468899999 99999888765
No 218
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.83 E-value=5.5 Score=27.75 Aligned_cols=71 Identities=8% Similarity=-0.058 Sum_probs=45.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.+...+..+|.+|++...+. .+...+...++.+.... +.++.+|.|+++-.......+..+..++.+.+++
T Consensus 83 ~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 83 DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHHHHHHHcCCchh
Confidence 45567788999999988763 56666666666666532 5678899999986431122233344455676654
No 219
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.88 E-value=3.8 Score=27.96 Aligned_cols=71 Identities=4% Similarity=-0.063 Sum_probs=45.8
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh---cCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
......+..+|.+|++...+.. + .....+++.+... ..+.++.+|.|++|.... ...+..+..+.++.+++
T Consensus 89 ~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 89 VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHHHHHHHHHcCCcee
Confidence 3455677789999999988754 3 5666666666543 235677899999985322 23334455555676555
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.32 E-value=3.7 Score=32.68 Aligned_cols=70 Identities=10% Similarity=-0.017 Sum_probs=41.6
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
.+|.+++|.|.+... +.......+... -.+..+|.||.|...+. ..........+.++.+++. |++++++
T Consensus 212 ~pd~vlLVvDA~~gq---~a~~~a~~f~~~--~~i~gVIlTKlD~~~~g--G~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQ---QAYNQALAFKEA--TPIGSIIVTKLDGSAKG--GGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp CCSEEEEEEEGGGGG---GHHHHHHHHHHS--CTTEEEEEECCSSCSSH--HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred cCceEEEEEeCCCch---hHHHHHHHHHhh--CCCeEEEEECCCCcccc--cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 578899999987532 222222333322 23556899999975321 1233555667888888874 6655443
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.79 E-value=10 Score=28.22 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=44.1
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcH
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 93 (153)
...+|.+++|.|.+.. ...-.....+.. ..+ ..+|.||+|...+ ......++...++++..++ +|++++
T Consensus 210 ~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~~--~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTAK--GGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp HHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCTT--HHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred HhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCcc--hHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 4478999999998642 222222233322 355 6788999996432 1123466777888888877 677776
Q ss_pred HH
Q 031782 94 KP 95 (153)
Q Consensus 94 ~l 95 (153)
++
T Consensus 280 dl 281 (297)
T 1j8m_F 280 EL 281 (297)
T ss_dssp CE
T ss_pred hc
Confidence 54
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.28 E-value=12 Score=29.61 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=36.8
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCC-c-EEEEeeCCCCCCcccChHHHHHHHHcCCceEEec
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-p-~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.+|.+++|.|.+... +.......+. ... + ..+|.||+|...+. .....+....+.++..++
T Consensus 210 ~~d~vllVvda~~g~---~~~~~~~~~~---~~~~~i~gvVlnK~D~~~~~--g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ---QAGIQAKAFK---EAVGEIGSIIVTKLDGSAKG--GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp CCSEEEEEEEGGGGG---GHHHHHHHHH---TTSCSCEEEEEECSSSCSTT--HHHHHHHHHSSCCEEEEC
T ss_pred cCcceeEEeeccccH---HHHHHHHHHh---hcccCCeEEEEeCCCCccch--HHHHHHHHHHCCCEEEee
Confidence 689999999986532 2212222222 245 5 88999999974321 123356667777776664
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.18 E-value=8.1 Score=30.63 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=42.0
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 93 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 93 (153)
..+.+++|.|.+.... .......+... -.+..+|.||.|...+. ..........+.++.+++. |++++
T Consensus 211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~~--G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 211 KPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAKG--GGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp CCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSCH--HHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred CCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEecccccccc--hHHHHHHHHHCCCEEEEEC--CCChH
Confidence 4689999999875322 22233334333 24578899999964221 1234556677899888874 76654
No 224
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=72.15 E-value=24 Score=25.15 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=35.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~D 60 (153)
.+...+..||.+|++...+. .+...+..+++.+.....+.++.+|.|++.
T Consensus 159 ~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 159 TLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred HHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 34556677999999999864 466666666666665544567889999984
No 225
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.70 E-value=16 Score=25.97 Aligned_cols=51 Identities=8% Similarity=0.032 Sum_probs=32.6
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh---h-cCCCcEE-EEeeCCCCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---V-CENIPIV-LCGNKVDVK 62 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~---~-~~~~p~v-lv~nK~Dl~ 62 (153)
+...+..+|.+|++...+. .++..+..+++.+.. . ..+.+++ +|.|+.+-.
T Consensus 127 ~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 127 TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 3455678999999999875 355555444444332 2 2356664 889999853
No 226
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=68.75 E-value=2.5 Score=33.55 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCCcEEEEeeCCCCCCc-ccChHHHHH---HHHcCCceEEecCC
Q 031782 48 ENIPIVLCGNKVDVKNR-QVKAKQVTF---HRKKNLQYYEISAK 87 (153)
Q Consensus 48 ~~~p~vlv~nK~Dl~~~-~v~~~~~~~---~~~~~~~~~e~Sa~ 87 (153)
.++|+|+|.||+|.... +...-...+ ....|+.++.+|..
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 47899999999997642 211111112 23457777877754
No 227
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=65.54 E-value=9.9 Score=25.01 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=38.8
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 96 (153)
.+..+|+--|++..+....+..+..+ + ++|++.+++|.+|. .......++..+-+--..+..+..++
T Consensus 48 kakLViiA~D~~p~~~~~~l~~lc~~---~--~VP~~~v~sk~eLG--------~a~G~~~~~s~vaI~d~~~s~~~~l~ 114 (134)
T 2ale_A 48 ISEFIIMAADCEPIEILLHLPLLCED---K--NVPYVFVPSRVALG--------RACGVSRPVIAASITTNDASAIKTQI 114 (134)
T ss_dssp CEEEEEEETTCSSGGGGTHHHHHHHH---H--TCCEEEESCHHHHH--------HHTTCSSCCSEEEEECCTTCTTHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHh---c--CCCEEEECCHHHHH--------HHhCCCCCeEEEEEEcCChHHHHHHH
Confidence 34555555566543344444433322 2 78998888776642 11111222223433333445677777
Q ss_pred HHHHHHHh
Q 031782 97 LYLARKLA 104 (153)
Q Consensus 97 ~~l~~~i~ 104 (153)
+.+...+.
T Consensus 115 ~~i~~~~~ 122 (134)
T 2ale_A 115 YAVKDKIE 122 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.75 E-value=15 Score=27.40 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=45.5
Q ss_pred hhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec
Q 031782 6 FNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 85 (153)
Q Consensus 6 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S 85 (153)
.++.+.+......+.++++.|.+.... +...+..+.... + ..+++.||.|-..+ ...........+.++.+++
T Consensus 209 ~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~-~t~iivTh~d~~a~--gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-G-LTGVIVTKLDGTAK--GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-C-CSEEEEECTTSSCC--CTTHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-C-CcEEEEECCccccc--ccHHHHHHHHHCCCeEEEe
Confidence 344555566667788888998765432 222233333221 2 35677899875321 1123466677788877776
Q ss_pred CCCCCCcHH
Q 031782 86 AKSNYNFEK 94 (153)
Q Consensus 86 a~~~~~v~~ 94 (153)
+|+++++
T Consensus 282 --~Ge~~~d 288 (304)
T 1rj9_A 282 --VGEGPDD 288 (304)
T ss_dssp --CSSSTTC
T ss_pred --CCCChhh
Confidence 5555544
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=64.35 E-value=3 Score=32.70 Aligned_cols=24 Identities=4% Similarity=-0.208 Sum_probs=16.0
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhH
Q 031782 10 IILICSIHGQCAIIMFDVTARLTY 33 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~ 33 (153)
....+++++|++++|+|+++.+++
T Consensus 109 ~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 109 AFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp HHHHHHHTSSSEEEEEEC------
T ss_pred HHHHHHHhcCeEEEEEecCCCcch
Confidence 456789999999999999875544
No 230
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=63.57 E-value=34 Score=23.72 Aligned_cols=71 Identities=8% Similarity=-0.074 Sum_probs=47.5
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-CCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEe
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 84 (153)
.+...+..+|.+|++...+ ..+...+..+++.+.... ....+.+|.|+++-.... . ...+.+.++.+++.+
T Consensus 133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~-~--~~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI-T--SDEIEKVIGRPISKR 204 (245)
T ss_dssp THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS-C--HHHHHHHHTSCEEEE
T ss_pred HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC-C--HHHHHHHhCCCeEEE
Confidence 4556677899999998876 457777777777776553 234577899999854321 1 234555667776654
No 231
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=62.84 E-value=42 Score=24.46 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=43.9
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc--CCCcEE-EEeeCCCCCCcccChHHHHHHHHcCCceEE
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~p~v-lv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e 83 (153)
...+..||.+|+|...+ ..+...+..+++.+.... .+.+++ +|.|+++-. .....+.+..+.+++.
T Consensus 174 ~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 174 AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HHHHHHHHHcCCCcee
Confidence 45567899999998775 456777777666666532 355655 899999831 2344566677777664
No 232
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=59.78 E-value=9.3 Score=27.99 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=27.2
Q ss_pred cCcEEEEEEeCCChhhHhhHH-HHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
.+++++++.|.+.. .+...+ ..+..+.. ..++++|.+|.|...
T Consensus 111 Ral~~lllldep~~-gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGH-SLRPLDLEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSS-SCCHHHHHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCC-cCCHHHHHHHHHHHh---cCcEEEEEeccccCC
Confidence 46888999996532 122222 23333433 389999999999864
No 233
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=56.54 E-value=22 Score=27.57 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=35.8
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
..|.+++.||+|... .+...... ..-.++.+|+..+.|++.+...+-+.+-
T Consensus 249 ~~p~i~v~nKid~~~----~eele~l~-~~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS----IEELELLY-RIPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp EECEEEEEECGGGSC----HHHHHHHT-TSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ccceEEEEecccccC----HHHHHHHh-cccchhhhhhhhcccchhHHHHHHHHcC
Confidence 479999999999642 12111111 1134789999999999999988887774
No 234
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=52.79 E-value=16 Score=27.66 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=38.8
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
+.|+| |.+|-|.. ..+..+.+++.+++++.++..+...+..+..+|...+
T Consensus 80 ~~P~I-Iltrg~~~----peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 80 ETPAI-IVTRDLEP----PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHEL 129 (314)
T ss_dssp TCCCE-EECTTCCC----CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCEE-EEeCCCCC----CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhh
Confidence 55555 45676653 4556788999999999999999999998888887764
No 235
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=49.93 E-value=65 Score=26.20 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEec--CCCCCCcHHHHHHHHHHHh
Q 031782 35 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 35 ~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--a~~~~~v~~lf~~l~~~i~ 104 (153)
++..-++.++.+ ++|+|+..|+..-..........+++.+.|+.+..+. ++=|+|-.++-+.+++.+.
T Consensus 348 NL~kHIen~~~f--GvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 348 NLRVHVENLRKF--NLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHHHHHT--TCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 333444555554 8999999999764221111224577888898775443 5677888888888887774
No 236
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=48.92 E-value=62 Score=22.22 Aligned_cols=69 Identities=7% Similarity=-0.015 Sum_probs=42.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.....+..+|.+|+|...+ ..+...+...+..+... ....+.+|.|+.+-.... .....+.+..+.+++
T Consensus 126 ~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 126 DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSDRD--IPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCTTC--CCHHHHHHHHCSCEE
T ss_pred HHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC-CCceEEEEEecCCcccch--hHHHHHHHHhCccce
Confidence 3456677899999998876 44666666666666554 123455789999854322 112344455666554
No 237
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=46.99 E-value=30 Score=21.60 Aligned_cols=68 Identities=7% Similarity=-0.051 Sum_probs=36.4
Q ss_pred hhhcCcEEEEEEeCCChhhHhh--HHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 14 CSIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
-+..+|++|++..+-....... +..+++.+.....+.++.++++--.- ..........+....|..++
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~~-~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGWG-SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESSC-CSHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCCC-CchHHHHHHHHHHHCCCEEc
Confidence 4568899999877643222222 55666665443357788888763221 01111223345555665543
No 238
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=46.94 E-value=72 Score=22.37 Aligned_cols=69 Identities=6% Similarity=-0.049 Sum_probs=42.3
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.....+..+|.+|+|...+ ..+...+..++..+... ....+-+|.|+++-.... .....+.+..+.+++
T Consensus 125 ~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 125 SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-GTKVLGVVVNRITTLGIE--MAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTTHH--HHHHHHHHHTTSCEE
T ss_pred HHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc-CCCeeEEEEccCCccccc--chHHHHHHHhCCCeE
Confidence 3455677899999998765 34666666666666654 123455889999854321 223345555666543
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=45.67 E-value=47 Score=24.98 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=41.7
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
..|-.+++.|.+.. .++......+... --..+++.||.|-..+ .-.........+.++..++ +|++++++
T Consensus 241 ~~de~llvLDa~t~---~~~~~~~~~~~~~--~~it~iilTKlD~~a~--~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 241 KPNLVIFVGDALAG---NAIVEQARQFNEA--VKIDGIILTKLDADAR--GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCSEEEEEEEGGGT---THHHHHHHHHHHH--SCCCEEEEECGGGCSC--CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cCCCCEEEEecHHH---HHHHHHHHHHHHh--cCCCEEEEeCcCCccc--hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 36778888886543 2232333333332 1234678899985321 1224466777888988888 77777654
No 240
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.40 E-value=1e+02 Score=23.58 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred chhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEe
Q 031782 5 CFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 5 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 84 (153)
..++.+.+......+-+++|.|.+.. .+... ....+.+.. + ..+++.+|.|-..+ --.....+...+.++..+
T Consensus 264 kqr~~iaral~~~P~e~lLvLDpttg--lD~~~-~~~~~~~~~-g-~t~iiiThlD~~~~--gG~~lsi~~~~~~pI~~i 336 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLDGNTG--LNMLP-QAREFNEVV-G-ITGLILTKLDGSAR--GGCVVSVVEELGIPVKFI 336 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEEGGGG--GGGHH-HHHHHHHHT-C-CCEEEEESCTTCSC--THHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEcCCCC--CCHHH-HHHHHHHhc-C-CeEEEEecCccccc--ccHHHHHHHHhCCCEEEE
Confidence 44566666677778888888886532 22221 122333221 3 34567889874211 112345667778887776
Q ss_pred cCCCCCCcHH
Q 031782 85 SAKSNYNFEK 94 (153)
Q Consensus 85 Sa~~~~~v~~ 94 (153)
+ +|+.+++
T Consensus 337 g--~Ge~~~D 344 (359)
T 2og2_A 337 G--VGEAVED 344 (359)
T ss_dssp E--CSSSGGG
T ss_pred e--CCCChHh
Confidence 6 4555554
No 241
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=45.40 E-value=39 Score=22.94 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=25.8
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEe
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 56 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~ 56 (153)
.-++.||++|.++|.+++++-...+--+ ... .++|++++.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGy--A~a--lgKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGF--MRA--MHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHH--HHH--TTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhh--Hhh--CCCeEEEEE
Confidence 3467899999999987766544332211 222 278998884
No 242
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=44.28 E-value=48 Score=23.15 Aligned_cols=51 Identities=16% Similarity=0.006 Sum_probs=35.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhc-------CCCcEEEEeeCCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDV 61 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-------~~~p~vlv~nK~Dl 61 (153)
.+...+..+|.+|+|...+ ..+...+..++..+.... ....+.+|.|+++-
T Consensus 128 ~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 128 GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 4556677899999999876 456777666666665432 12467789999884
No 243
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=44.13 E-value=33 Score=24.87 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=31.2
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK 62 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~ 62 (153)
.....+|.+|+|..... .+...+...++.+... +.+++ +|.|+.|..
T Consensus 210 ~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 210 LFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred HHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 34467899999988864 3455555555555544 56665 889999853
No 244
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=44.01 E-value=30 Score=23.93 Aligned_cols=47 Identities=11% Similarity=-0.049 Sum_probs=29.4
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh----hcCCCcEEEEeeC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNK 58 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~----~~~~~p~vlv~nK 58 (153)
..-+..||++|++.-.=+..--..++.|+..+.. ...++|+.++++-
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 4447789999998776553322345566666654 2246788777764
No 245
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=42.98 E-value=43 Score=24.17 Aligned_cols=66 Identities=9% Similarity=0.168 Sum_probs=35.9
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh----cCCCcEE-EEeeCCCCCCcccChHHHHHHHHcC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIV-LCGNKVDVKNRQVKAKQVTFHRKKN 78 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~----~~~~p~v-lv~nK~Dl~~~~v~~~~~~~~~~~~ 78 (153)
...+..+|.+|++...+. .+...+..++..+... ..+.+++ +|.|+.|............+.+.++
T Consensus 171 ~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~ 241 (298)
T 2oze_A 171 NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHK 241 (298)
T ss_dssp HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhc
Confidence 344556899999888753 3444444444443331 2356644 8899998643211112334555555
No 246
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=42.72 E-value=60 Score=22.31 Aligned_cols=49 Identities=10% Similarity=-0.096 Sum_probs=33.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 60 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~D 60 (153)
.+...+..+|.+|++...+ ..++..+..+.+.+.... -..+.+|.|+.+
T Consensus 146 ~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 146 LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC-CccEEEEEeCCC
Confidence 4456678899999999886 456666666655444442 245778999988
No 247
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.29 E-value=80 Score=22.34 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=39.7
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCC-----Cc-cc--ChHHHHHHHHcCCceEE
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK-----NR-QV--KAKQVTFHRKKNLQYYE 83 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~-----~~-~v--~~~~~~~~~~~~~~~~e 83 (153)
.+|.+|+|...+. .+...+...++.+... +.+++ +|.|+.|.. .+ .. ......+.+.++.+++.
T Consensus 152 ~aD~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 152 KPTGVVVVSTPQE-LTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp CCSEEEEEECSSS-CCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEE
T ss_pred cCCeEEEEecCcc-chHHHHHHHHHHHHhC--CCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEE
Confidence 6899999987764 3555555666555544 56776 899998742 11 11 11245666777877654
No 248
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=41.05 E-value=44 Score=26.31 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=30.1
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEe
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 56 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~ 56 (153)
..|+..+.+.++|+|.++. ++.....|+..+... ..+++.+-
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEE
Confidence 6777788999999999987 566677787776655 34444443
No 249
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=40.94 E-value=12 Score=29.41 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCcEEEEeeCCCCC--C------cccChH-----HHHHH----HHcC---CceEEecC--CCCCCcHHHHHHHHHHHhCC
Q 031782 49 NIPIVLCGNKVDVK--N------RQVKAK-----QVTFH----RKKN---LQYYEISA--KSNYNFEKPFLYLARKLAGD 106 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~--~------~~v~~~-----~~~~~----~~~~---~~~~e~Sa--~~~~~v~~lf~~l~~~i~~~ 106 (153)
+.|+++|.||.|+. + ...... ...+. .+.| ..++.+|+ ..+.|++++...+...++..
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 68999999999974 1 111111 12232 1222 35688899 66778999999999888654
Q ss_pred C
Q 031782 107 P 107 (153)
Q Consensus 107 ~ 107 (153)
.
T Consensus 255 ~ 255 (413)
T 1tq4_A 255 K 255 (413)
T ss_dssp G
T ss_pred h
Confidence 3
No 250
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=37.36 E-value=22 Score=24.08 Aligned_cols=45 Identities=7% Similarity=-0.116 Sum_probs=23.6
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh----cCCCcEEEEeeC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNK 58 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~----~~~~p~vlv~nK 58 (153)
-+..+|++|+++-+=+..--..++.|+..+... ..+++++++++-
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 456677777765543322222345566655431 235566666554
No 251
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=36.93 E-value=30 Score=23.29 Aligned_cols=46 Identities=4% Similarity=-0.168 Sum_probs=29.9
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEee
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 57 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~n 57 (153)
..-+..||++|+++-+=+..--..++.|+..+.....++|++++.+
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~ 124 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSY 124 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 4557789999999888654333355667766543334677776654
No 252
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=36.56 E-value=51 Score=22.55 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=27.2
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh----cCCCcEEEEee
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGN 57 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~----~~~~p~vlv~n 57 (153)
..-+..||++|++.-.=+..--..++.|+..+... ..++|+.++++
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~ 116 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTS 116 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEE
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEe
Confidence 44567888888887765533333445555555431 24677777765
No 253
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=35.87 E-value=33 Score=21.81 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=22.4
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
.+..+|+--|++..+-...+..+... .++|++.+.+|.+|
T Consensus 41 ka~LVvIA~D~~p~~i~~~l~~lC~~-----~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 41 KAKLVLIANDVDPIELVVFLPALCKK-----MGVPYAIVKGKARL 80 (113)
T ss_dssp CCSEEEECSCCSSHHHHTTHHHHHHH-----TTCCCEECSCSTTT
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHH-----cCCCEEEECCHHHH
Confidence 46666666666543222223222221 27888888888776
No 254
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=35.59 E-value=40 Score=22.58 Aligned_cols=41 Identities=2% Similarity=-0.181 Sum_probs=25.1
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 58 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK 58 (153)
-++.||++|.++|.+++++-...+- .-... .++|++++..+
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~Ei--GyA~A--~gkPVv~~~~~ 115 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMEL--GYALS--QGKYVLLVIPD 115 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHH--HHHHH--TTCEEEEEECG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHH--HHHHH--CCCeEEEEEcC
Confidence 4568999999998765554433221 11222 37898888654
No 255
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=35.40 E-value=48 Score=22.30 Aligned_cols=46 Identities=4% Similarity=-0.078 Sum_probs=30.1
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh----hcCCCcEEEEeeC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNK 58 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~----~~~~~p~vlv~nK 58 (153)
.-+..+|++|+.+.+-...-...+..|++.+.. ...+.++.++++-
T Consensus 48 ~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 48 EDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSS 97 (188)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEE
T ss_pred HHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEEC
Confidence 345678999998877654444456677777654 1246777777764
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=34.58 E-value=1.1e+02 Score=22.61 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=39.6
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
..+.+++|.|.+.. .+.+.. ...+.... + ..-+|.||.|-..+ .-...+.....++++.+++ +|+.++++
T Consensus 222 ~p~~vllVlda~t~--~~~l~~-a~~~~~~~-~-i~gvVlTk~D~~~~--gG~~l~~~~~~~~Pi~~i~--~Ge~~~dl 291 (306)
T 1vma_A 222 APHETLLVIDATTG--QNGLVQ-AKIFKEAV-N-VTGIILTKLDGTAK--GGITLAIARELGIPIKFIG--VGEKAEDL 291 (306)
T ss_dssp CCSEEEEEEEGGGH--HHHHHH-HHHHHHHS-C-CCEEEEECGGGCSC--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred CCcEEEEEEECCCC--HHHHHH-HHHHHhcC-C-CCEEEEeCCCCccc--hHHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence 47888999888632 122221 12232221 2 34456799995322 1225577788888888776 46555543
No 257
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=33.55 E-value=28 Score=22.52 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=7.9
Q ss_pred CCcEEEEeeCCCC
Q 031782 49 NIPIVLCGNKVDV 61 (153)
Q Consensus 49 ~~p~vlv~nK~Dl 61 (153)
++|++.+.+|.+|
T Consensus 67 ~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 67 EIKYVSVPKRASL 79 (126)
T ss_dssp TCCEEEESCSHHH
T ss_pred CCCEEEECCHHHH
Confidence 5666666655543
No 258
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=33.55 E-value=43 Score=22.16 Aligned_cols=45 Identities=2% Similarity=-0.175 Sum_probs=28.2
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh------------cCCCcEEEEee
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV------------CENIPIVLCGN 57 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~------------~~~~p~vlv~n 57 (153)
.-+..+|++|+++-+=...--..++.|++.+... ..+++++++.+
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t 123 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAV 123 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEE
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEe
Confidence 4567899999998886543333456666665321 12566776666
No 259
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=33.18 E-value=82 Score=19.67 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=25.8
Q ss_pred hhhcCcEEEEEEeCCChhhHh--hHHHHHHHHHhhcCCCcEEEEee
Q 031782 14 CSIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGN 57 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~p~vlv~n 57 (153)
-+..+|++++...+-...... .+..|+..+.....+.++.++++
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t 87 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGS 87 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 456788888887764422122 35556666554334667777776
No 260
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.00 E-value=63 Score=23.64 Aligned_cols=48 Identities=15% Similarity=-0.015 Sum_probs=30.9
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCC
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 62 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~ 62 (153)
.....+|.+|+|...... +...+...++.+.... -..+-+|.|++|..
T Consensus 220 ~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g-~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 220 IVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNG-IPVKGVILNSIFRR 267 (286)
T ss_dssp HHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTT-CCCCEEEEEEECCC
T ss_pred HHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCC-CCEEEEEEcCcccc
Confidence 345578999999988753 4555555555555542 23355788999864
No 261
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.34 E-value=1.5e+02 Score=21.80 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=42.3
Q ss_pred chhhhhhHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEe
Q 031782 5 CFNVLIILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 84 (153)
Q Consensus 5 ~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 84 (153)
..++.+.+....+.+-++++.|.+.. .+... ....+.+. .+. .+++.+|.|-..+ .-.....+...+.++..+
T Consensus 207 kqr~~iaral~~~P~e~lLvLDptsg--lD~~~-~~~~~~~~-~g~-t~iiiThlD~~~~--~g~~l~~~~~~~~pi~~i 279 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLDGNTG--LNMLP-QAREFNEV-VGI-TGLILTKLDGSAR--GGCVVSVVEELGIPVKFI 279 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEEGGGG--GGGHH-HHHHHHHH-TCC-CEEEEECCSSCSC--THHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhhccCCCeeEEEEeCCCC--cCHHH-HHHHHHHh-cCC-CEEEEeCCCCCCc--cChheehHHHHCCCEEEE
Confidence 34555556666677877888886532 22221 12233222 133 4566788774211 122346667777777666
Q ss_pred cCCCCCCcHH
Q 031782 85 SAKSNYNFEK 94 (153)
Q Consensus 85 Sa~~~~~v~~ 94 (153)
. +|+.+++
T Consensus 280 ~--~Ge~~~d 287 (302)
T 3b9q_A 280 G--VGEAVED 287 (302)
T ss_dssp E--CSSSGGG
T ss_pred e--CCCChhh
Confidence 5 4444443
No 262
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=31.62 E-value=81 Score=21.22 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=28.4
Q ss_pred cCcEEEEEEeCCChh-hHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 17 HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
++|.+|+.-|+.+.. .......+++.+... +.|+++|..--|.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~--~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA--HLPTAYVPGPQDA 75 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG--CSCEEEECCTTSC
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEECCCCCc
Confidence 799999999998754 444444555555544 5677766444454
No 263
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=30.90 E-value=82 Score=21.90 Aligned_cols=17 Identities=0% Similarity=0.010 Sum_probs=14.2
Q ss_pred hcCcEEEEEEeCCChhh
Q 031782 16 IHGQCAIIMFDVTARLT 32 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s 32 (153)
.++|++|+.-|+.+...
T Consensus 31 ~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEA 47 (260)
T ss_dssp HCCSEEEEESCCCCCHH
T ss_pred cCCCEEEECCCCCCccC
Confidence 47999999999988543
No 264
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=30.77 E-value=28 Score=28.39 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHhC
Q 031782 38 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 105 (153)
Q Consensus 38 ~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 105 (153)
.-++.++.+ ++|+|+..|+..-..........+++.+.|+.+..+=++=|+|-.++-+.+++.+..
T Consensus 365 kHien~~~f--GvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 365 KHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 334445444 899999999976321111111335566666655444466778888888888888764
No 265
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=30.46 E-value=56 Score=22.43 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=23.7
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC 44 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~ 44 (153)
.-+..||++|+.+-+=+..--..++.|++.+.
T Consensus 83 ~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~ 114 (212)
T 3r6w_A 83 GELFDSDLLVISTPMYNFSVPSGLKAWIDQIV 114 (212)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHHhCCEEEEEcCcccccCCHHHHHHHHHHh
Confidence 44778999999988866443445677888873
No 266
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=30.06 E-value=58 Score=21.80 Aligned_cols=48 Identities=4% Similarity=-0.146 Sum_probs=29.2
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-----cCCCcEEEEeeCC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKV 59 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~vlv~nK~ 59 (153)
..-+..+|++|+.+-+-...--..++.|++.+... ..+.++.++++--
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 118 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTA 118 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBS
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecC
Confidence 34567899999988775533333455666554331 2467777776643
No 267
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.74 E-value=48 Score=22.23 Aligned_cols=33 Identities=3% Similarity=-0.087 Sum_probs=23.0
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC 44 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~ 44 (153)
..-+..||++|+++-+=+..--..++.|+..+.
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIA 113 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHhe
Confidence 345778999999987765432335677888876
No 268
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=29.71 E-value=82 Score=21.24 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=22.6
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEee
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 57 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~n 57 (153)
-++.||++|.++|...+++-...+- .-... .++|++++.+
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~Ei--G~A~a--~gkPVi~~~~ 105 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEI--GVAYA--KGIPVVALYT 105 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHH--HHHHH--TTCCEEEECC
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHH--HHHHH--CCCEEEEEEc
Confidence 4678999999888664443332221 11222 2678777643
No 269
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=29.60 E-value=57 Score=22.20 Aligned_cols=70 Identities=9% Similarity=-0.083 Sum_probs=37.1
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-----------cCCCcEEEEeeCCCCCCcccChHHHHHHHHcCC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 79 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-----------~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~ 79 (153)
...-+..||++|++.-.=+..--..++.|+..+... ..++|++++++--.............+....|+
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~~G~ 140 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPFIRM 140 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHHTTC
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHHcCC
Confidence 345567899999987765543333456677766531 235666666554321111122234455556665
Q ss_pred c
Q 031782 80 Q 80 (153)
Q Consensus 80 ~ 80 (153)
.
T Consensus 141 ~ 141 (192)
T 3fvw_A 141 H 141 (192)
T ss_dssp E
T ss_pred e
Confidence 3
No 270
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=29.58 E-value=1.2e+02 Score=21.73 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=32.5
Q ss_pred hhhHhhhhcCcEEEEEEeCCChhhHhhHH---HH-------------H---HHHHhh--cCC-CcEEEEeeCCCCCC
Q 031782 9 LIILICSIHGQCAIIMFDVTARLTYKNVP---TW-------------H---RDLCRV--CEN-IPIVLCGNKVDVKN 63 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~---~~-------------~---~~i~~~--~~~-~p~vlv~nK~Dl~~ 63 (153)
..+...+..+|.+|++...+. .+...+. .+ + ..+... ..+ .++.+|.|+++-..
T Consensus 117 ~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 117 AITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTE 192 (286)
T ss_dssp HHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCC
T ss_pred HHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCC
Confidence 345667788999999998763 2222221 11 2 333222 335 67789999998643
No 271
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=29.52 E-value=24 Score=27.02 Aligned_cols=73 Identities=7% Similarity=-0.068 Sum_probs=41.3
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChH-HHHHHHHcCCceEEecCCCCCC
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYN 91 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sa~~~~~ 91 (153)
+..+.++++++....-.+..+.. +..+.. .+.|++++.||.|..+..-... ...+.+..|......++....+
T Consensus 244 ~~i~~~~~~l~~~~~~~~g~l~~-l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 244 REIHPRVYQLNEGQTLFFGGLAR-LDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp SCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred cccCceEEEEcCCceEEECCEEE-EEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhhh
Confidence 67788888888743211111100 001111 3689999999999876433333 4456666776655555554443
No 272
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=29.48 E-value=45 Score=22.05 Aligned_cols=70 Identities=7% Similarity=-0.099 Sum_probs=36.1
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-cCCCcEEEEeeCCCCCCc-ccChHHHHHHHHcCCceE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~p~vlv~nK~Dl~~~-~v~~~~~~~~~~~~~~~~ 82 (153)
.-+..+|++|++.-.=+..--..++.|+..+... ..++|+.++++----... .............|..++
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v 130 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVI 130 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEe
Confidence 3567889999887775543333445555443321 246777777653221111 111123345566666544
No 273
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=28.83 E-value=1.7e+02 Score=22.82 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=43.6
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH-
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP- 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l- 95 (153)
.+|.+++|.|.+.. .+.-.....+.... + ..-+|.||.|-..+ ...........+.++.+++ +|+.++++
T Consensus 210 ~pd~vlLVvDa~tg---q~av~~a~~f~~~l-~-i~GVIlTKlD~~~~--~g~alsi~~~~g~PI~flg--~Ge~~~dl~ 280 (425)
T 2ffh_A 210 GPDEVLLVLDAMTG---QEALSVARAFDEKV-G-VTGLVLTKLDGDAR--GGAALSARHVTGKPIYFAG--VSEKPEGLE 280 (425)
T ss_dssp CCSEEEEEEEGGGT---THHHHHHHHHHHHT-C-CCEEEEESGGGCSS--CHHHHHHHHHHCCCEEEEE--CSSSGGGEE
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhcC-C-ceEEEEeCcCCccc--HHHHHHHHHHHCCCEEEEe--CCCChhhcc
Confidence 58888999997632 22222222332221 2 25568899985422 1123456677788877766 45555543
Q ss_pred ---HHHHHHHHhC
Q 031782 96 ---FLYLARKLAG 105 (153)
Q Consensus 96 ---f~~l~~~i~~ 105 (153)
-..++..+..
T Consensus 281 ~f~~~~~a~~ilg 293 (425)
T 2ffh_A 281 PFYPERLAGRILG 293 (425)
T ss_dssp ECCHHHHHHHHHT
T ss_pred ccCHHHHHHHHhc
Confidence 2445555543
No 274
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=28.44 E-value=37 Score=23.13 Aligned_cols=45 Identities=4% Similarity=-0.091 Sum_probs=28.3
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-cCCCcEEEEee
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGN 57 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~p~vlv~n 57 (153)
.-+..+|++|++.-+=+..--..++.|+..+... ..++|++++++
T Consensus 65 ~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 65 DATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred HHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 3467899999988776533233445565554321 24678888887
No 275
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=28.33 E-value=79 Score=21.65 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=30.1
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh-hcCCCcEEEEee
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 57 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~-~~~~~p~vlv~n 57 (153)
...-+..||++|++.-.=+..--..++.|+..+.. ...++|++++++
T Consensus 79 ~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t 126 (191)
T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAAT 126 (191)
T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEE
T ss_pred HHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEe
Confidence 34556789999998777554333455666666542 224678877776
No 276
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=27.86 E-value=48 Score=27.22 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=30.5
Q ss_pred hhhhHhhhhcCcEEEEEEeCCChhhHh-hHHHHHHHHHhhcCCCcEEEEeeCCCCCC
Q 031782 8 VLIILICSIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKN 63 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~ 63 (153)
..+...|+.....+++++...+.+... ....+...+.. .+.+.|+|.||.|+..
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECGGGSS
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecchhhcC
Confidence 345667776655555544443332111 22333344432 3678999999999874
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=27.84 E-value=1.4e+02 Score=21.81 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=34.5
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
.++.+++|.|.+.. .+.+ .....+... -...-+|.||.|-..+ ...........++++..++ +|+++++
T Consensus 210 ~~~~~~lv~~~~~~--~~~~-~~~~~~~~~--~~i~givlnk~d~~~~--~g~~~~~~~~~~~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG--QEAL-SVARAFDEK--VGVTGLVLTKLDGDAR--GGAALSARHVTGKPIYFAG--VSEKPEG 278 (295)
T ss_dssp CCSEEEEEEEGGGT--HHHH-HHHHHHHHH--TCCCEEEEECGGGCSS--CHHHHHHHHHHCCCEEEEC--------C
T ss_pred CCCEEEEEEeCCCc--HHHH-HHHHHHhhc--CCCCEEEEECCCCCcc--HHHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 47888888887532 1111 112222221 1124478899986432 1234466777888888777 4555543
No 278
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=27.66 E-value=83 Score=22.76 Aligned_cols=45 Identities=11% Similarity=-0.024 Sum_probs=30.4
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh--------------cCCCcEEEEeeC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--------------CENIPIVLCGNK 58 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~--------------~~~~p~vlv~nK 58 (153)
-+..||++|+.+-+=+..-=..++.|++.+... ..+++++++.+-
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~ 148 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITT 148 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEEC
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeC
Confidence 378999999999886643333567788887532 135677766653
No 279
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=26.72 E-value=1.1e+02 Score=22.37 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=28.5
Q ss_pred hhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCC
Q 031782 14 CSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK 62 (153)
Q Consensus 14 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~ 62 (153)
....+|.+|+|...... +...+...++.+... +.+++ +|.|++|..
T Consensus 233 l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 233 VGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp HGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred HHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC--CCCeEEEEEeCCccC
Confidence 34568888888877542 455555555555544 34433 777998854
No 280
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=26.54 E-value=83 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=36.5
Q ss_pred CCcEEEEeeCCCCC---C-cccChHHHHHHHHcC--CceEEecCCC---------------------CCCcHHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVK---N-RQVKAKQVTFHRKKN--LQYYEISAKS---------------------NYNFEKPFLYLAR 101 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~---~-~~v~~~~~~~~~~~~--~~~~e~Sa~~---------------------~~~v~~lf~~l~~ 101 (153)
..|++.+.|+.|.. + .........++...+ ..++.+||+. +.|++.+.....+
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~ 303 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYN 303 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 47999999998831 1 111223456666665 7899999886 5677777777754
Q ss_pred HH
Q 031782 102 KL 103 (153)
Q Consensus 102 ~i 103 (153)
.+
T Consensus 304 ~L 305 (392)
T 1ni3_A 304 AL 305 (392)
T ss_dssp HT
T ss_pred Hh
Confidence 33
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=26.47 E-value=1.1e+02 Score=22.72 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=43.9
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCc-EEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
.+|.+++|.+.+.. .+.+.. +.......+ .-+|.||.|-..+ ......+....++++..++ .|++++++
T Consensus 227 ~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~d~~~~--~g~~~~~~~~~~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKMDSTSK--GGIGLAIKELLNIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECGGGCSC--TTHHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred CCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCCCCCCc--hhHHHHHHHHHCcCEEEEe--CCCCcccc
Confidence 37888888887632 222222 222222233 3478899995432 1234566777888877665 56666544
Q ss_pred H----HHHHHHHhC
Q 031782 96 F----LYLARKLAG 105 (153)
Q Consensus 96 f----~~l~~~i~~ 105 (153)
. ..+++.++.
T Consensus 297 ~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 297 LAFDIDQYIVHLSS 310 (320)
T ss_dssp EECCHHHHHHHHTG
T ss_pred ccCCHHHHHHHHhC
Confidence 3 445555543
No 282
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=26.30 E-value=61 Score=21.04 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=24.9
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHH
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 103 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 103 (153)
++|++.+++|.+|. ........+..+-+--..+..+.+++..+...+
T Consensus 84 ~IP~~~v~sk~eLG--------~a~G~~~~v~~vaI~d~~~s~i~~~~~~~~~~~ 130 (135)
T 2aif_A 84 NTPYVFVRSKVALG--------RACGVSRPVIAAAITSKDGSSLSSQITELKDQI 130 (135)
T ss_dssp TCCEEEESCHHHHH--------HHTTCSSCCSEEEEECCTTCTTHHHHHHHHHTT
T ss_pred CCcEEEECCHHHHH--------HHhCCCCcEEEEEEEcCCcHHHHHHHHHHHHHH
Confidence 78998887776541 111112222223333334556777777776655
No 283
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=25.91 E-value=25 Score=26.31 Aligned_cols=46 Identities=11% Similarity=-0.048 Sum_probs=28.6
Q ss_pred hhcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCC
Q 031782 15 SIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 61 (153)
Q Consensus 15 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl 61 (153)
+..+|++|+.-|+++..+...+..+++.+.... ..++++|..--|.
T Consensus 77 i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~-~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 77 MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLP-YEYKIVIAGNHEL 122 (296)
T ss_dssp CCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSC-CSEEEECCCTTCG
T ss_pred cCCCCEEEECCcccCCCCHHHHHHHHHHHHhCC-CCeEEEEcCCccc
Confidence 357999999999998655555544444444432 2445666555564
No 284
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=25.58 E-value=16 Score=24.32 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=27.1
Q ss_pred CCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHHHHHHHHHh
Q 031782 49 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 104 (153)
Q Consensus 49 ~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 104 (153)
++|++.+.+|.+|. ........+..+-+-...+.++.+.+..+...+.
T Consensus 93 ~VP~~~v~sk~eLG--------~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~ 140 (144)
T 2jnb_A 93 NVPYVFVRSKQALG--------RACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE 140 (144)
T ss_dssp CCCCEEESCSHHHH--------HHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEECCHHHHH--------HHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 78988888776641 1222222333344444455567777777766653
No 285
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=25.52 E-value=85 Score=21.34 Aligned_cols=34 Identities=6% Similarity=-0.110 Sum_probs=24.3
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHH
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLC 44 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~ 44 (153)
...-+..||++|+++-+=+..-=..++.|++.+.
T Consensus 67 ~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 67 YRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHhCCEEEEECchhhccccHHHHHHHHHHc
Confidence 3445678999999998866433345677888874
No 286
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=25.37 E-value=1e+02 Score=19.59 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=36.3
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCc--eEEecCCCCCCcHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEK 94 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~--~~e~Sa~~~~~v~~ 94 (153)
.+..+|+--|++...-...+..+.. . .++|++.+++|.+| ....|.. .--++..+..+..+
T Consensus 47 ka~lViiA~D~~p~~~~~~l~~lc~---~--~~VP~~~v~sk~eL------------G~a~Gk~~~vs~vaI~d~~~~~~ 109 (122)
T 3o85_A 47 KAELVIIAADADPIEIVLHLPLACE---D--KGVPYVFIGSKNAL------------GRACNVSVPTIVASIGKHDALGN 109 (122)
T ss_dssp CCSEEEEETTCSSGGGGTTHHHHHH---T--TTCCEEEESCHHHH------------HHHTTCSSCCSEEEECCCTTTHH
T ss_pred CceEEEEeCCCChHHHHHHHHHHHH---H--hCCCEEEECCHHHH------------HHHhCCCCCEEEEEEEcccchHH
Confidence 4666666666664322233333221 1 26888888777654 2233322 11223334444677
Q ss_pred HHHHHHHHHh
Q 031782 95 PFLYLARKLA 104 (153)
Q Consensus 95 lf~~l~~~i~ 104 (153)
.++.+...+.
T Consensus 110 ~~~~~~~~i~ 119 (122)
T 3o85_A 110 VVAEIVGKVE 119 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766664
No 287
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=24.70 E-value=78 Score=22.20 Aligned_cols=70 Identities=9% Similarity=-0.100 Sum_probs=39.7
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-----cCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
.-+..||++|+..-+=+..--..++.|++.+... ..+.+++++++----...........+....|+.++
T Consensus 75 ~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 75 KELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHCCCeee
Confidence 3467999999988876544344566777776321 236677776654211111112223456667776543
No 288
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.63 E-value=1.3e+02 Score=18.44 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=38.8
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHh--hcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 94 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~--~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 94 (153)
..|++|+=++..+.+.++ ++..++. ...+.|+|++....+ ......+...|...|-.. ..+.++
T Consensus 52 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~ls~~~~-------~~~~~~~~~~g~~~~l~k---p~~~~~ 117 (147)
T 2zay_A 52 HPHLIITEANMPKISGMD----LFNSLKKNPQTASIPVIALSGRAT-------AKEEAQLLDMGFIDFIAK---PVNAIR 117 (147)
T ss_dssp CCSEEEEESCCSSSCHHH----HHHHHHTSTTTTTSCEEEEESSCC-------HHHHHHHHHHTCSEEEES---SCCHHH
T ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHcCcccCCCCEEEEeCCCC-------HHHHHHHHhCCCCEEEeC---CCCHHH
Confidence 457666665555443433 3445554 234788888876554 122223345565444333 445566
Q ss_pred HHHHHHHHHh
Q 031782 95 PFLYLARKLA 104 (153)
Q Consensus 95 lf~~l~~~i~ 104 (153)
+...+...+.
T Consensus 118 L~~~i~~~~~ 127 (147)
T 2zay_A 118 LSARIKRVLK 127 (147)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 289
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=23.76 E-value=28 Score=20.54 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=7.7
Q ss_pred CCcEEEEeeCCCC
Q 031782 49 NIPIVLCGNKVDV 61 (153)
Q Consensus 49 ~~p~vlv~nK~Dl 61 (153)
++|++.+.+|.+|
T Consensus 53 ~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 53 GISVSMVESMKKL 65 (82)
T ss_dssp TCCEEEESCHHHH
T ss_pred CCCEEEECCHHHH
Confidence 5666666655543
No 290
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=23.50 E-value=52 Score=20.63 Aligned_cols=21 Identities=14% Similarity=0.014 Sum_probs=17.6
Q ss_pred hhhhHhhhhcCcEEEEEEeCC
Q 031782 8 VLIILICSIHGQCAIIMFDVT 28 (153)
Q Consensus 8 ~~~~~~~~~~ad~~ilv~d~~ 28 (153)
..++...+..||++|+.-|..
T Consensus 48 n~Lt~~~I~~AD~VIia~d~~ 68 (106)
T 2m1z_A 48 NELTEKDVNIGEVVIFAVDTK 68 (106)
T ss_dssp SCCCHHHHHHCSEEEEEESSC
T ss_pred CCCCHHHHhhCCEEEEecccc
Confidence 456778889999999999986
No 291
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.32 E-value=1.3e+02 Score=18.22 Aligned_cols=74 Identities=7% Similarity=0.084 Sum_probs=38.6
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHHH
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 96 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 96 (153)
..|++|+=++..+...++ ++..++....+.|++++....+. .....+...|...|-.- ..+.+++.
T Consensus 49 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~ii~ls~~~~~-------~~~~~~~~~g~~~~l~k---p~~~~~l~ 114 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMD----ILREIKKITPHMAVIILTGHGDL-------DNAILAMKEGAFEYLRK---PVTAQDLS 114 (143)
T ss_dssp TCCEEEEESCCSSSCHHH----HHHHHHHHCTTCEEEEEECTTCH-------HHHHHHHHTTCSEEEES---SCCHHHHH
T ss_pred CCCEEEEeCCCCCCcHHH----HHHHHHHhCCCCeEEEEECCCCH-------HHHHHHHHhCcceeEeC---CCCHHHHH
Confidence 467666666555544443 33344444456788877665441 22233445565444332 34556666
Q ss_pred HHHHHHHh
Q 031782 97 LYLARKLA 104 (153)
Q Consensus 97 ~~l~~~i~ 104 (153)
..+...+.
T Consensus 115 ~~l~~~~~ 122 (143)
T 3jte_A 115 IAINNAIN 122 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 292
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=23.08 E-value=1.8e+02 Score=19.59 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=27.5
Q ss_pred EEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEE-EEeeCCCCCCcccChHHHHHHHHcCCceE
Q 031782 21 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAKQVTFHRKKNLQYY 82 (153)
Q Consensus 21 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~v-lv~nK~Dl~~~~v~~~~~~~~~~~~~~~~ 82 (153)
+|+|.... ..+...+...++.+.+. +.+++ +|.|++|-...........+.+.++.+++
T Consensus 141 vi~v~~~~-~~~~~~~~~~i~~l~~~--~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 141 VILVVGVK-LGCINHAMLTAQVIQHA--GLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp EEEEEECS-TTHHHHHHHHHHHHHHT--TCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred EEEEecCC-CCcHHHHHHHHHHHHHC--CCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEE
Confidence 55555553 23444444444444432 45544 67788774321111112344445565554
No 293
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=23.00 E-value=95 Score=20.74 Aligned_cols=47 Identities=9% Similarity=-0.104 Sum_probs=28.3
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-----cCCCcEEEEeeC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNK 58 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~vlv~nK 58 (153)
..-+..+|++|+..-+=...--..++.|+..+... ..+.++.++++-
T Consensus 65 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~ 116 (199)
T 2zki_A 65 LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEA 116 (199)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEB
T ss_pred HHHHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeC
Confidence 34567899999988775533333455666655321 235677666654
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=22.87 E-value=2.1e+02 Score=23.02 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=35.9
Q ss_pred CcEEEEEEeCCCh-hhHhhHHHHHHHHHhhcCCCcEEEEeeCCCCCCcccChHHHHHHHHcCCceEEecCCCCCCcHHH
Q 031782 18 GQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 95 (153)
Q Consensus 18 ad~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~p~vlv~nK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 95 (153)
.+-++||.|.+-. +.+.. ...+.... + ...+|.||.|-..+ .-....++..+++++.+++ +|++++++
T Consensus 412 P~evLLvLDattGq~al~~----ak~f~~~~-~-itgvIlTKLD~tak--gG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 412 PHEVMLTIDASTGQNAVSQ----AKLFHEAV-G-LTGITLTKLDGTAK--GGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp SSEEEEEEEGGGTHHHHHH----HHHHHHHT-C-CSEEEEECGGGCSC--CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred CCeeEEEecCcccHHHHHH----HHHHHhhc-C-CCEEEEEcCCCccc--ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 4567777776532 22222 22232221 2 24467889884211 1224466677788877765 66666554
No 295
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=22.72 E-value=65 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=14.8
Q ss_pred hHhhhhcCcEEEEEEeCCC
Q 031782 11 ILICSIHGQCAIIMFDVTA 29 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~ 29 (153)
--+.+-+|+++++||+.+.
T Consensus 33 ELsvLCdaeV~livfs~~g 51 (77)
T 1egw_A 33 ELSVLCDCEIALIIFNSSN 51 (77)
T ss_dssp HHHHHTTCEEEEEEECTTC
T ss_pred HHhcccCCeEEEEEECCCC
Confidence 3445568999999999876
No 296
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=22.63 E-value=1e+02 Score=20.82 Aligned_cols=33 Identities=6% Similarity=-0.023 Sum_probs=23.8
Q ss_pred hhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHh
Q 031782 13 ICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 45 (153)
Q Consensus 13 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~ 45 (153)
.-+..||++|+++-+=+..--..++.|++.+..
T Consensus 90 ~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 90 DQFLSADKVVIANPMWNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCC
T ss_pred HHHHhCCEEEEEeccccCCCCHHHHHHHHHHhc
Confidence 346789999999888664433456778888753
No 297
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=22.48 E-value=1.3e+02 Score=20.25 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=29.8
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh---------cCCCcEEEEee
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---------CENIPIVLCGN 57 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~---------~~~~p~vlv~n 57 (153)
...-+..||++|+.+-+=....=..++.|++++... ..+++++++.+
T Consensus 45 ~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t 100 (177)
T 3ha2_A 45 EQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVS 100 (177)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEE
T ss_pred HHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEe
Confidence 345677899999998886543333566788776432 13556665544
No 298
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=21.69 E-value=68 Score=19.52 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=23.3
Q ss_pred hhhHhhhhcCcEEEEEEeCCChh-hH--hhHHHHHHHHHhh
Q 031782 9 LIILICSIHGQCAIIMFDVTARL-TY--KNVPTWHRDLCRV 46 (153)
Q Consensus 9 ~~~~~~~~~ad~~ilv~d~~~~~-s~--~~~~~~~~~i~~~ 46 (153)
.---+.+=+|+++++||+.++.- .| ..+...+.....+
T Consensus 31 A~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~ 71 (90)
T 3p57_A 31 AYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY 71 (90)
T ss_dssp HHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhc
Confidence 33345566899999999987631 22 2445555555544
No 299
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.32 E-value=1.3e+02 Score=20.11 Aligned_cols=43 Identities=5% Similarity=-0.162 Sum_probs=24.1
Q ss_pred HhhhhcCcEEEEEEeC---CChhhHhhHHHHHHHHHhhcCCCcEEEEeeC
Q 031782 12 LICSIHGQCAIIMFDV---TARLTYKNVPTWHRDLCRVCENIPIVLCGNK 58 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~---~~~~s~~~~~~~~~~i~~~~~~~p~vlv~nK 58 (153)
..-+++||++|.++|. ..+++-...+ +.-... .++|++++.+.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafE--iGyA~A--lgKPVi~l~~d 107 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFE--VGCAAA--LNKMVLTFTSD 107 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHH--HHHHHH--TTCEEEEECSC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHH--HHHHHH--CCCEEEEEEcC
Confidence 3557789999999882 3333222111 111222 37899888654
No 300
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=21.32 E-value=59 Score=21.71 Aligned_cols=47 Identities=4% Similarity=-0.199 Sum_probs=27.0
Q ss_pred HhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh-----cCCCcEEEEeeC
Q 031782 12 LICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNK 58 (153)
Q Consensus 12 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~vlv~nK 58 (153)
..-+..+|++|+..-+-...--..++.|++.+... ..+.++.++++-
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~ 114 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSST 114 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeC
Confidence 34567899999987765433233445555554321 235666666654
No 301
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.46 E-value=1.2e+02 Score=22.46 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=31.4
Q ss_pred cCcEEEEEEeCCChhhHhhHHHHHHHHHhhcCCCcEEEEe----eCCCC
Q 031782 17 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG----NKVDV 61 (153)
Q Consensus 17 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~p~vlv~----nK~Dl 61 (153)
++|+++++--.-.+.+-+.+-.|+..+....+++|+++.- +.+++
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l 154 (303)
T 2wkj_A 106 GFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKL 154 (303)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCC
T ss_pred CCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCC
Confidence 8999999876655556667777777777665338988664 35554
No 302
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.27 E-value=72 Score=22.91 Aligned_cols=48 Identities=4% Similarity=-0.152 Sum_probs=30.2
Q ss_pred hHhhhhcCcEEEEEEeCCChhhHhhHHHHHHHHHhh------cCCCcEEEEeeC
Q 031782 11 ILICSIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV------CENIPIVLCGNK 58 (153)
Q Consensus 11 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~------~~~~p~vlv~nK 58 (153)
...-+..||++|++.-.=+..--..++.|+..+... ..++|+.++++-
T Consensus 92 l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 92 LRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 345667899999988776544334556666655431 246777777763
No 303
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.25 E-value=2.3e+02 Score=19.73 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=38.0
Q ss_pred hcCcEEEEEEeCCChhhHhhHHHHHHHHHhhcC--CCcE-EEEeeCCCCCCcccChH-HHHHHHHcCCceE
Q 031782 16 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPI-VLCGNKVDVKNRQVKAK-QVTFHRKKNLQYY 82 (153)
Q Consensus 16 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~p~-vlv~nK~Dl~~~~v~~~-~~~~~~~~~~~~~ 82 (153)
..+|.+|++...+ ..+...+..+++.+..... +.++ -+|.|+.+-. .... ...+.+.++.+++
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~---~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA---NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS---CCHHHHHHHHHHHTCCEE
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc---hhHHHHHHHHHHcCCccc
Confidence 4689999888875 4466666666666655431 4454 5789998632 1222 3455566676654
No 304
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=20.13 E-value=2.9e+02 Score=20.88 Aligned_cols=51 Identities=8% Similarity=-0.096 Sum_probs=26.9
Q ss_pred hhHhhhhcCcEEEEEEeCCChh------hHhhHHHHHHHHHhhcCCCc---EEEEeeCCC
Q 031782 10 IILICSIHGQCAIIMFDVTARL------TYKNVPTWHRDLCRVCENIP---IVLCGNKVD 60 (153)
Q Consensus 10 ~~~~~~~~ad~~ilv~d~~~~~------s~~~~~~~~~~i~~~~~~~p---~vlv~nK~D 60 (153)
.+...+..||.+|+|...+... .+..+...++.+.....+.+ ++.+.|+.+
T Consensus 262 ~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 262 FLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp HHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 3455667899999999876431 12233333334443322222 456788877
Done!