Query 031783
Match_columns 153
No_of_seqs 132 out of 1115
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 7.5E-56 1.6E-60 315.7 17.4 151 1-151 1-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 7.7E-56 1.7E-60 309.4 15.2 147 6-152 2-148 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 5.9E-52 1.3E-56 298.3 19.3 148 5-152 2-149 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 9.6E-52 2.1E-56 281.6 14.7 147 4-150 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 5E-51 1.1E-55 292.2 18.9 145 7-151 3-147 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 9.8E-48 2.1E-52 269.1 16.2 150 1-150 1-164 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 1.5E-46 3.2E-51 270.4 14.9 150 1-152 1-154 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 4.1E-46 8.9E-51 257.5 15.4 149 4-152 3-158 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3.9E-45 8.4E-50 260.0 14.7 138 9-146 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 1.4E-44 3.1E-49 257.4 16.5 139 8-146 2-141 (141)
11 smart00212 UBCc Ubiquitin-conj 100.0 7.4E-44 1.6E-48 254.8 18.3 143 8-150 1-145 (145)
12 KOG0426 Ubiquitin-protein liga 100.0 4.2E-44 9.1E-49 244.4 14.4 146 4-149 3-162 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 1.2E-43 2.7E-48 245.3 12.1 145 3-148 27-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 5.8E-41 1.2E-45 230.8 14.2 146 5-151 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 3.3E-40 7.1E-45 234.1 12.0 147 4-153 2-150 (189)
16 KOG0423 Ubiquitin-protein liga 100.0 1.3E-37 2.7E-42 221.5 8.3 147 6-152 11-157 (223)
17 KOG0420 Ubiquitin-protein liga 100.0 4.8E-36 1E-40 213.2 11.7 142 6-150 29-174 (184)
18 KOG0894 Ubiquitin-protein liga 100.0 4.8E-32 1E-36 199.1 15.2 117 1-119 1-120 (244)
19 KOG0427 Ubiquitin conjugating 100.0 3.7E-32 8.1E-37 185.6 10.8 118 6-124 16-135 (161)
20 KOG0429 Ubiquitin-conjugating 99.9 4.7E-27 1E-31 173.4 13.8 142 6-148 20-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 3.4E-24 7.4E-29 160.6 9.6 109 5-116 11-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 1.4E-17 3.1E-22 145.3 7.2 110 7-116 853-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 7.3E-16 1.6E-20 134.8 11.1 113 5-117 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 6.1E-15 1.3E-19 101.6 8.7 115 1-115 1-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.9 1.1E-08 2.5E-13 72.0 7.4 67 50-116 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 2E-08 4.3E-13 67.6 5.7 91 54-145 13-109 (122)
27 PF08694 UFC1: Ubiquitin-fold 98.5 4.1E-08 8.9E-13 68.7 2.1 96 7-107 26-135 (161)
28 PF05743 UEV: UEV domain; Int 98.1 9E-06 1.9E-10 56.4 6.6 78 34-116 32-117 (121)
29 KOG3357 Uncharacterized conser 97.8 4.2E-05 9.2E-10 53.0 4.7 95 7-107 29-138 (167)
30 KOG2391 Vacuolar sorting prote 97.6 0.00051 1.1E-08 54.9 8.4 81 33-118 51-139 (365)
31 PF14462 Prok-E2_E: Prokaryoti 96.9 0.017 3.8E-07 40.0 9.2 89 24-115 13-120 (122)
32 PF05773 RWD: RWD domain; Int 96.7 0.0083 1.8E-07 40.0 6.3 68 8-76 4-73 (113)
33 smart00591 RWD domain in RING 96.1 0.056 1.2E-06 35.7 7.7 27 50-76 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.9 0.015 3.2E-07 42.3 4.3 60 56-115 57-125 (162)
35 PF09765 WD-3: WD-repeat regio 91.6 0.31 6.6E-06 38.8 4.3 85 7-114 101-186 (291)
36 KOG4018 Uncharacterized conser 87.6 2.3 5E-05 32.2 6.0 63 9-74 6-71 (215)
37 KOG0309 Conserved WD40 repeat- 85.8 4.8 0.0001 36.2 7.8 69 6-76 421-491 (1081)
38 PF14460 Prok-E2_D: Prokaryoti 85.5 1.5 3.2E-05 32.1 4.1 46 74-122 89-137 (175)
39 PF06113 BRE: Brain and reprod 75.1 9.8 0.00021 30.9 5.8 67 34-112 53-122 (333)
40 TIGR03737 PRTRC_B PRTRC system 72.5 5.8 0.00013 30.5 3.7 44 75-122 131-178 (228)
41 cd00421 intradiol_dioxygenase 54.7 21 0.00045 25.2 3.7 25 50-74 64-89 (146)
42 smart00340 HALZ homeobox assoc 52.1 13 0.00028 20.8 1.7 14 7-20 21-34 (44)
43 cd03457 intradiol_dioxygenase_ 49.5 27 0.00059 25.9 3.7 25 50-74 85-109 (188)
44 PRK11700 hypothetical protein; 48.9 1E+02 0.0022 23.1 6.5 70 33-109 87-184 (187)
45 PF06113 BRE: Brain and reprod 48.6 28 0.00061 28.3 3.8 25 51-75 305-329 (333)
46 KOG0177 20S proteasome, regula 45.6 6.1 0.00013 29.4 -0.3 31 85-115 135-165 (200)
47 cd07981 TAF12 TATA Binding Pro 43.6 73 0.0016 19.6 4.5 43 109-151 6-48 (72)
48 cd03459 3,4-PCD Protocatechuat 41.4 45 0.00097 24.0 3.7 24 51-74 72-100 (158)
49 PF03366 YEATS: YEATS family; 41.0 95 0.0021 19.8 5.6 53 35-89 2-54 (84)
50 KOG4445 Uncharacterized conser 40.4 37 0.00081 27.3 3.3 25 52-76 45-69 (368)
51 KOG3285 Spindle assembly check 37.8 67 0.0015 23.9 4.1 55 6-71 120-174 (203)
52 PF12652 CotJB: CotJB protein; 37.8 71 0.0015 20.2 3.8 30 121-150 25-54 (78)
53 PF12018 DUF3508: Domain of un 35.1 54 0.0012 25.8 3.5 30 121-150 237-266 (281)
54 PF14135 DUF4302: Domain of un 34.8 1.5E+02 0.0032 22.6 5.9 70 5-85 9-102 (235)
55 PF03847 TFIID_20kDa: Transcri 32.3 1.2E+02 0.0027 18.5 4.3 42 109-150 4-45 (68)
56 COG0544 Tig FKBP-type peptidyl 32.2 1E+02 0.0022 26.1 4.9 13 54-66 211-223 (441)
57 cd05845 Ig2_L1-CAM_like Second 30.7 1.1E+02 0.0025 19.9 4.0 26 49-76 16-41 (95)
58 TIGR02423 protocat_alph protoc 30.2 79 0.0017 23.6 3.5 24 51-74 96-124 (193)
59 PF00718 Polyoma_coat: Polyoma 30.0 1.7E+02 0.0038 23.3 5.5 40 48-90 193-234 (297)
60 KOG0662 Cyclin-dependent kinas 27.6 62 0.0013 24.6 2.5 55 66-120 167-225 (292)
61 cd03463 3,4-PCD_alpha Protocat 26.4 1E+02 0.0022 22.8 3.6 23 52-74 93-120 (185)
62 KOG1047 Bifunctional leukotrie 25.1 75 0.0016 27.9 2.9 29 47-76 248-279 (613)
63 KOG2851 Eukaryotic-type DNA pr 24.6 1.7E+02 0.0037 24.3 4.7 33 81-113 331-369 (412)
64 PF11745 DUF3304: Protein of u 24.1 38 0.00083 23.0 0.9 20 85-104 50-69 (118)
65 PF04881 Adeno_GP19K: Adenovir 24.1 76 0.0016 22.2 2.3 21 30-50 43-63 (139)
66 PF13950 Epimerase_Csub: UDP-g 23.7 76 0.0017 18.9 2.1 19 95-113 36-54 (62)
67 PF14455 Metal_CEHH: Predicted 23.5 2.3E+02 0.0049 20.6 4.7 65 9-77 9-77 (177)
68 COG3866 PelB Pectate lyase [Ca 23.2 1.5E+02 0.0032 24.1 4.0 40 35-75 197-240 (345)
69 PRK05414 urocanate hydratase; 22.2 1E+02 0.0022 26.8 3.1 26 125-150 282-307 (556)
70 PF12065 DUF3545: Protein of u 22.0 64 0.0014 19.4 1.4 13 7-19 36-48 (59)
71 TIGR01228 hutU urocanate hydra 21.9 1E+02 0.0022 26.6 3.1 26 125-150 273-298 (545)
72 PF01175 Urocanase: Urocanase; 21.5 1.5E+02 0.0033 25.7 4.1 26 125-150 272-297 (546)
73 PRK15486 hpaC 4-hydroxyphenyla 21.4 58 0.0012 23.7 1.4 68 10-94 6-76 (170)
74 KOG4274 Positive cofactor 2 (P 21.1 2.5E+02 0.0055 24.9 5.3 49 8-67 622-674 (742)
75 PF09943 DUF2175: Uncharacteri 21.0 1E+02 0.0022 20.7 2.3 19 36-56 2-20 (101)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-56 Score=315.66 Aligned_cols=151 Identities=48% Similarity=0.951 Sum_probs=147.4
Q ss_pred CCCCChHHHHHHHHHHHhhCCCCCeEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccee
Q 031783 1 MANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (153)
Q Consensus 1 ma~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~H 79 (153)
|++..+.+||++|+++|++++++++++.+.++ |+++|+++|.||++||||||.|+++|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 66777999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred cceeCCCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 031783 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 151 (153)
Q Consensus 80 pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~ 151 (153)
||||.+|.||+++|.+.|+|++++++||.+|+++|.+||+++|+|.||+++|++|+++|.++||+|+++||.
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-56 Score=309.37 Aligned_cols=147 Identities=64% Similarity=1.062 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCC
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (153)
+.+||.+|+++|.+++++|+++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 031783 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 152 (153)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~ 152 (153)
|.||+++|.+.|+|+.+|..||.+|.++|.+||+++|++.+++.+|+.|+.+|.++||+||++||+.
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.9e-52 Score=298.28 Aligned_cols=148 Identities=67% Similarity=1.153 Sum_probs=144.4
Q ss_pred ChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeC
Q 031783 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 84 (153)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~ 84 (153)
++.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||++
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 031783 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 152 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~ 152 (153)
+|.||+++|.+.|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||..
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999963
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-52 Score=281.64 Aligned_cols=147 Identities=41% Similarity=0.795 Sum_probs=142.8
Q ss_pred CChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceeccee
Q 031783 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (153)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~ 83 (153)
-++.|||++|+++++++++.|++..|.++|+++|++.|+||.+|||+||+|++.|.|+++||.+||.|+|.+..||||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvy 82 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVY 82 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
.+|.+|+++|...|+|.|++..||.+|++||.+|++++|+|.|||++|.+++.+|.++++..+.+..
T Consensus 83 a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 83 ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988753
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5e-51 Score=292.19 Aligned_cols=145 Identities=52% Similarity=0.968 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCC
Q 031783 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (153)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (153)
.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 031783 87 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 151 (153)
Q Consensus 87 ~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~ 151 (153)
.||++++.+.|+|++++++||.+|+++|.+|++++|+|.+|+++|.+|+++|.++|++|+++||.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-48 Score=269.12 Aligned_cols=150 Identities=33% Similarity=0.700 Sum_probs=143.2
Q ss_pred CCCCChHHHHHHHHHHHhhCCCCCeEEEeCC-CCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecccee
Q 031783 1 MANSNLPRRIIKETQRLLSEPAPGISASPSE-DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYH 79 (153)
Q Consensus 1 ma~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~H 79 (153)
|++.++..-|+++|++|++.+.+|+.+...+ +|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.+.+||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 7888888999999999999999999998754 599999999999999999999999999999999999999999999999
Q ss_pred cceeCCCceeeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 031783 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 146 (153)
Q Consensus 80 pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~ 146 (153)
||||++|.+|+++|- +.|.|..|+++||++|.+||.+||.++|+|-+|++.|++++++|.++++++|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 999999999999993 5799999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 031783 147 RLYA 150 (153)
Q Consensus 147 ~~~a 150 (153)
++..
T Consensus 161 r~s~ 164 (171)
T KOG0425|consen 161 RRSQ 164 (171)
T ss_pred HHHH
Confidence 8753
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=270.38 Aligned_cols=150 Identities=45% Similarity=0.860 Sum_probs=144.9
Q ss_pred CCCCChHHHHHHHHHHHhhCC---CCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc
Q 031783 1 MANSNLPRRIIKETQRLLSEP---APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (153)
Q Consensus 1 ma~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i 77 (153)
|++ +.+||++|.+++.+++ ..||.+....+|+.+..+.|.||+|||||||+|.+.|.+|++||++||+|+|.|.|
T Consensus 1 m~~--~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI 78 (200)
T KOG0418|consen 1 MSN--AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI 78 (200)
T ss_pred Ccc--HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence 555 7799999999999987 68999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeC-CCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 031783 78 YHPNIDK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 152 (153)
Q Consensus 78 ~Hpnv~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~ 152 (153)
|||||++ +|.||+|++.+.|++++|++++|++|+++|..|++++|.+.+.+++|.++++.|.+.||.|+..||++
T Consensus 79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999996 89999999999999999999999999999999999999999999999999999999999999999975
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-46 Score=257.52 Aligned_cols=149 Identities=30% Similarity=0.607 Sum_probs=141.5
Q ss_pred CChHHHHHHHHHHHhhCCCCCeEEEeCC-----CCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccce
Q 031783 4 SNLPRRIIKETQRLLSEPAPGISASPSE-----DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 78 (153)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~ 78 (153)
..+..||++|-+.|.++.+-|+++.|.. .|++.|.|.|.|++||+||||.|.+++.||++||.+||+++|.+++|
T Consensus 3 ~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~ 82 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLF 82 (158)
T ss_pred chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCc
Confidence 3446899999999999999999998853 47999999999999999999999999999999999999999999999
Q ss_pred ecceeCCCceeeccCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 031783 79 HPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 152 (153)
Q Consensus 79 Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~ 152 (153)
|||||++|.|||++|.+. |+|+.||.+||.+|+.||.+||+.+|+|.||...|.+|+.+|.++||.++++||..
T Consensus 83 HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 83 HPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 999999999999999754 99999999999999999999999999999999999999999999999999999863
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.9e-45 Score=259.97 Aligned_cols=138 Identities=54% Similarity=1.014 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCCc
Q 031783 9 RIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (153)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G~ 87 (153)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCC-CCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 031783 88 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 146 (153)
Q Consensus 88 icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~ 146 (153)
||++++.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999974 599999999999999999999999999999999999999999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.4e-44 Score=257.38 Aligned_cols=139 Identities=54% Similarity=0.994 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCCc
Q 031783 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGR 87 (153)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G~ 87 (153)
|||++|+++|+++++.|+.+.+.++|+++|+++|.|+++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCC-CCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHH
Q 031783 88 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWT 146 (153)
Q Consensus 88 icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~ 146 (153)
||++++... |+|++++++||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999985
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=7.4e-44 Score=254.79 Aligned_cols=143 Identities=55% Similarity=1.018 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCC-CCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCC
Q 031783 8 RRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (153)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (153)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998775 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 87 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 87 ~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
.||++.+. ++|+|++++++||.+|+++|.+|+.++++|.||+++|.+++++|.++|++|+++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-44 Score=244.44 Aligned_cols=146 Identities=35% Similarity=0.717 Sum_probs=140.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCeEEEe-CCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecce
Q 031783 4 SNLPRRIIKETQRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (153)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv 82 (153)
..++|||++||++|-.++++||.+.| +++|+++|.+.|.||++|+|+||.|..++.||.|||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 45789999999999999999999998 57899999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeccCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHh
Q 031783 83 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 149 (153)
Q Consensus 83 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~ 149 (153)
+.+|++|+++|. +.|+|.++++.||.++.+||.+||-++++|.+|+.++++|+++|.+.|+..++|.
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999983 5799999999999999999999999999999999999999999999999999875
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=245.27 Aligned_cols=145 Identities=41% Similarity=0.730 Sum_probs=140.0
Q ss_pred CCChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecce
Q 031783 3 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNI 82 (153)
Q Consensus 3 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv 82 (153)
..++.|||++|+..|+....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|.++.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHH
Q 031783 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 148 (153)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~ 148 (153)
|..|.||+++|.+.|+..+++++||.+|+++|-+||.++|+|..||+++. |.++|.+.+.+.-++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998 999999998887654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-41 Score=230.85 Aligned_cols=146 Identities=35% Similarity=0.718 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHHhhCCCCCeE-EEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceeccee
Q 031783 5 NLPRRIIKETQRLLSEPAPGIS-ASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (153)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~ 83 (153)
.+.+||++|+.+|++++...+. +..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4679999999999998876553 5667899999999999 8999999999999999999999999999999999999999
Q ss_pred CCCceeeccC-CCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 031783 84 KLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 151 (153)
Q Consensus 84 ~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~ 151 (153)
+.|++|+.++ .++|.|+..+++||+.|..++.+|++++|++.|+|..|.+|+.+|.+.|.+||+||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999988 4899999999999999999999999999999999999999999999999999999985
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=234.08 Aligned_cols=147 Identities=37% Similarity=0.714 Sum_probs=137.6
Q ss_pred CChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceeccee
Q 031783 4 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID 83 (153)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~ 83 (153)
++..||+..|..+|... +..|....+++++++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+
T Consensus 2 s~~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID 78 (189)
T KOG0416|consen 2 SSGKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID 78 (189)
T ss_pred CCcccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence 44568999999998874 457888889999999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeeccCCCCCCCcCCHHHHHH-HHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCCC
Q 031783 84 K-LGRICLDILKDKWSPALQIRTVLL-SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 153 (153)
Q Consensus 84 ~-~G~icl~~l~~~W~p~~~i~~il~-~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~~ 153 (153)
. +|.||++.+.+.|+|.+.+..|+. .|-.||..||+.+|+|.|||.+|..+++.|.+++|++.+|||+|+
T Consensus 79 e~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 79 EASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred hccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChh
Confidence 6 999999999999999999999986 567899999999999999999999999999999999999999875
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=221.55 Aligned_cols=147 Identities=37% Similarity=0.675 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCC
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL 85 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (153)
+.|.|.+|++.+...++.||.|-+.++|+...++.|.||.||||++|.|++.+.+..|||.+||+-.|.|.||||||..|
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcCC
Q 031783 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 152 (153)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~~ 152 (153)
|.||.+.|..+|+|..+|++||..|+.+|..|++++.+|+||.++..++.++|.++||.++.-||+|
T Consensus 91 GEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 91 GEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-36 Score=213.21 Aligned_cols=142 Identities=35% Similarity=0.643 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEE--eCCCCCc--EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecc
Q 031783 6 LPRRIIKETQRLLSEPAPGISAS--PSEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPN 81 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpn 81 (153)
+.-||++|..++. .++++++. ...+++. +++++|. |+.+.|.||.|.|.+.+|+.||+.||+|++.+.|||||
T Consensus 29 a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 3456666666654 34555432 2233433 5999998 99999999999999999999999999999999999999
Q ss_pred eeCCCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
||.+|.||+++|+++|+|..++.+|+.+|+.+|.+|+++||+|.|||..+++|++.|...||.....++
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999877665
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-32 Score=199.09 Aligned_cols=117 Identities=30% Similarity=0.645 Sum_probs=107.8
Q ss_pred CCCCChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceec
Q 031783 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHP 80 (153)
Q Consensus 1 ma~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hp 80 (153)
||+.++.|||+|||+.|+++|.++|.++|.++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.||- .
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999972 3
Q ss_pred ceeCCCceeeccC---CCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031783 81 NIDKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPNP 119 (153)
Q Consensus 81 nv~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~ 119 (153)
.+-.+.++|+++. ++.|+|++++.+||.+|.++|.+-.+
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 3445579999766 59999999999999999999987554
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.7e-32 Score=185.56 Aligned_cols=118 Identities=34% Similarity=0.660 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc-eecceeC
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDK 84 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i-~Hpnv~~ 84 (153)
+.+||++|+.+|+.+++.|+... ..+|+..|.+.+.|.+||.|+|.+|.+++.||+.||+..|.|.|+.++ .||+|++
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 56899999999999999999988 788999999999999999999999999999999999999999999886 7999999
Q ss_pred CCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCC-CCCccc
Q 031783 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPN-PDDPLS 124 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~-~~~~~n 124 (153)
||.||+++|.++|+|++++.+|.++|.+||++-. -..|.+
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 9999999999999999999999999999998743 334543
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.7e-27 Score=173.36 Aligned_cols=142 Identities=24% Similarity=0.385 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEeccceeccee
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPM--AAPKVRFLTKIYHPNID 83 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~~~i~Hpnv~ 83 (153)
...-|+.||..+.+.+.+||+|.|+..|-+.|.++|+ ...+.|.||+|+|+|.+|++||. +.|+|.|.++++||+|.
T Consensus 20 qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 20 QEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 3457888999999999999999999999999999999 56688999999999999999995 88999999999999999
Q ss_pred C-CCceeeccCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCc-c-cHHHHHHHhhCHHHHHHHHHHHHHH
Q 031783 84 K-LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP-L-SENIAKHWKTNEAEAVETAKEWTRL 148 (153)
Q Consensus 84 ~-~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~~-~-n~ea~~~~~~~~~~f~~~a~~~~~~ 148 (153)
+ ++.+|++.....|.... +|+++|.+|+..|++|+.+.+ + |+||+.+|++++++|.++|+++++.
T Consensus 99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6 89999988877798876 599999999999999998866 4 9999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-24 Score=160.59 Aligned_cols=109 Identities=32% Similarity=0.661 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeC
Q 031783 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDK 84 (153)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~ 84 (153)
++.|||++|.++++ +|...+.+.|.++|+++|+++|.||.+|-||||+|+.+|.||.+||++||.+..+|+- ..+--
T Consensus 11 paVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE~ 87 (314)
T KOG0428|consen 11 PAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFEV 87 (314)
T ss_pred HHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Cceee
Confidence 46799999999998 7778888999999999999999999999999999999999999999999999998863 34445
Q ss_pred CCceeeccC---CCCCCCcCCHHHHHHHHHHhhcC
Q 031783 85 LGRICLDIL---KDKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 85 ~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~ 116 (153)
+.+||+++. ++.|-|+|+|++.|..|..+|-.
T Consensus 88 nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt 122 (314)
T KOG0428|consen 88 NKKICLSISGYHPETWQPSWSIRTALLALIGFMPT 122 (314)
T ss_pred CceEEEEecCCCccccCcchhHHHHHHHHHccccC
Confidence 678999877 58999999999999999999854
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-17 Score=145.33 Aligned_cols=110 Identities=30% Similarity=0.627 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc--ceecceeC
Q 031783 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDK 84 (153)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~--i~Hpnv~~ 84 (153)
.+..+.|++-|..+.+.||+|+..++.+....+.|.|+.+|||.+|.|.|.+.||++||.+||.|...+. .++||.|+
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 3556677778888899999999999998889999999999999999999999999999999999999975 58999999
Q ss_pred CCceeeccCC-------CCCCCcCCHHHHHHHHHHhhcC
Q 031783 85 LGRICLDILK-------DKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 85 ~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~ 116 (153)
+|++|+++|. +.|+|+-+|.++|.+|+.|+-.
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 9999999984 6799988999999999998754
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.3e-16 Score=134.77 Aligned_cols=113 Identities=34% Similarity=0.710 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc---ceecc
Q 031783 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK---IYHPN 81 (153)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~---i~Hpn 81 (153)
...+|+++|++-+.++.+.|+.+.+.+..+...++.|.|+.+|||++|+|.|.|.||..||..||.|.+.+. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred eeCCCceeeccCC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 031783 82 IDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 117 (153)
Q Consensus 82 v~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~p 117 (153)
.|.+|+||+++|- +.|+|. .++.++|.+|+.++...
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 9999999999883 679998 67999999999998654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.1e-15 Score=101.61 Aligned_cols=115 Identities=22% Similarity=0.355 Sum_probs=92.7
Q ss_pred CCCCChHHHHHHHHHHHhhCCCCCeEEEeC--CCC--CcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 031783 1 MANSNLPRRIIKETQRLLSEPAPGISASPS--EDN--MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 1 ma~~~~~~Rl~~E~~~l~~~~~~~~~~~~~--~~~--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
|+-.++.-||.+|+.+-++-..+|...... .+| +..|..+|.||+.|+||+-+|.++|...++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 445566678999998876655555433322 233 5689999999999999999999999999999999999999999
Q ss_pred ceecceeC-CCceeeccC--CCCCCCcCCHHHHHHHHHHhhc
Q 031783 77 IYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLSIQALLS 115 (153)
Q Consensus 77 i~Hpnv~~-~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~ 115 (153)
+--..|+. +|.+.-..+ -.+|.-.++++.+|..++.+|.
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 99888885 777775333 3699999999999999987654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.86 E-value=1.1e-08 Score=71.98 Aligned_cols=67 Identities=30% Similarity=0.653 Sum_probs=61.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEeccc---eecceeCCCceee---ccCCCCCCCcCCHHHHHHHHHHhhcC
Q 031783 50 EGGVFKLELFLPEEYPMAAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 50 egg~f~~~i~fp~~YP~~pP~v~f~~~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 116 (153)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +...+.|.|.-.+.++|...+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6899999999999 77778999999999999999999873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-08 Score=67.64 Aligned_cols=91 Identities=19% Similarity=0.342 Sum_probs=67.4
Q ss_pred EEEEEEcCCCCCCCCCeeEEeccce-ecceeCCCceeeccC-CCCCCCcCCHHHHHHHHHHhhcCCC--CCCcccHHHHH
Q 031783 54 FKLELFLPEEYPMAAPKVRFLTKIY-HPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN--PDDPLSENIAK 129 (153)
Q Consensus 54 f~~~i~fp~~YP~~pP~v~f~~~i~-Hpnv~~~G~icl~~l-~~~W~p~~~i~~il~~i~~ll~~p~--~~~~~n~ea~~ 129 (153)
.-+.+.|++|||+.||.++...|+- -.-|-.+|.||+.++ .++|+.+++++.++++|-.++.... .+.+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 3457889999999999999887653 334446899999999 5899999999999999999988754 4456655544
Q ss_pred HHhh--CHHHHHHHHHHH
Q 031783 130 HWKT--NEAEAVETAKEW 145 (153)
Q Consensus 130 ~~~~--~~~~f~~~a~~~ 145 (153)
+|.. -.+.|+..++-.
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 4533 344566655544
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.53 E-value=4.1e-08 Score=68.70 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhh-------CCCCCeEEEeCCCCCcEEEEEEECCCCCCCCC--cEEEEEEEcCCCCCCCCCeeEEec-c
Q 031783 7 PRRIIKETQRLLS-------EPAPGISASPSEDNMRYFNVMILGPTQSPYEG--GVFKLELFLPEEYPMAAPKVRFLT-K 76 (153)
Q Consensus 7 ~~Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyeg--g~f~~~i~fp~~YP~~pP~v~f~~-~ 76 (153)
..||.+||..|.+ +....+.++ +..+-+.|.+...= .++- ..|.+++.+|..||..||.+.... .
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 4799999999864 223445555 33345566554320 1111 356777889999999999998764 2
Q ss_pred ceecceeCCCceeeccCC----CCCCCcCCHHHHH
Q 031783 77 IYHPNIDKLGRICLDILK----DKWSPALQIRTVL 107 (153)
Q Consensus 77 i~Hpnv~~~G~icl~~l~----~~W~p~~~i~~il 107 (153)
--....|.+|+||++..+ ..-.|.++|.+.|
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 345677889999998875 3457888888776
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.15 E-value=9e-06 Score=56.37 Aligned_cols=78 Identities=26% Similarity=0.531 Sum_probs=53.4
Q ss_pred CcEEEEEEECCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEeccc-----eecceeCCCceeeccCCCCCCC-cCCHHH
Q 031783 34 MRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIRT 105 (153)
Q Consensus 34 ~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~~~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~ 105 (153)
+....++|. -.|.|..|. +.|-+|.+||.+||.|...... -+.+||.+|++.+..+. +|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHHH
Confidence 455566664 458887774 6777999999999999877432 14499999999887765 7776 778999
Q ss_pred HHHHHHHhhcC
Q 031783 106 VLLSIQALLSA 116 (153)
Q Consensus 106 il~~i~~ll~~ 116 (153)
++..+...|.+
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99998887754
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=4.2e-05 Score=52.97 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEEecc
Q 031783 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGG----------VFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
.+||.+||+.|.. +++-+.++-..|.-.-.-++||-|-|. .|.+++.+|-.||...|.+....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999875 222223333344333344677777773 466778899999999998876531
Q ss_pred -ceecceeCCCceeeccCC-CCC---CCcCCHHHHH
Q 031783 77 -IYHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (153)
Q Consensus 77 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 107 (153)
--.-..+.+|.||+...+ .-| .|.++|.+.+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 123355678999986553 456 4566666543
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00051 Score=54.85 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=62.5
Q ss_pred CCcEEEEEEECCCCCCCCCcEEE--EEEEcCCCCCCCCCeeEEecc-----ceecceeCCCceeeccCCCCC-CCcCCHH
Q 031783 33 NMRYFNVMILGPTQSPYEGGVFK--LELFLPEEYPMAAPKVRFLTK-----IYHPNIDKLGRICLDILKDKW-SPALQIR 104 (153)
Q Consensus 33 ~~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~~~-----i~Hpnv~~~G~icl~~l~~~W-~p~~~i~ 104 (153)
+++...++|. ++|.|.+|. +.|-+.+.||..||.+..... --|-+||.+|.|.+..|. +| -|+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 4555566664 678887776 556699999999999866532 138999999999999887 56 5566799
Q ss_pred HHHHHHHHhhcCCC
Q 031783 105 TVLLSIQALLSAPN 118 (153)
Q Consensus 105 ~il~~i~~ll~~p~ 118 (153)
.++..|...|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887644
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.88 E-value=0.017 Score=39.95 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=59.9
Q ss_pred CeEEEeCCCCCcEEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCCce--eecc-------
Q 031783 24 GISASPSEDNMRYFNVMILG--PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRI--CLDI------- 92 (153)
Q Consensus 24 ~~~~~~~~~~~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G~i--cl~~------- 92 (153)
|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|.+.+..|-.... .+|.+ |-+.
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 5566655555555655 554 66777999999999999999999999777766533221 11223 3221
Q ss_pred -------CCCCCCCcCC-HHHHHHHHHHhhc
Q 031783 93 -------LKDKWSPALQ-IRTVLLSIQALLS 115 (153)
Q Consensus 93 -------l~~~W~p~~~-i~~il~~i~~ll~ 115 (153)
....|.|..+ +.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1256999884 9999998887663
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.67 E-value=0.0083 Score=40.04 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEE--CCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 031783 8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMIL--GPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~--Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
.+...|+..|+.-=+..+ ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|.+.+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467788888876333333 2333445556666662 1234445567899999999999999999987764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.07 E-value=0.056 Score=35.66 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEecc
Q 031783 50 EGGVFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 50 egg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
..-.+.+++.+|++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987653
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.85 E-value=0.015 Score=42.31 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=48.2
Q ss_pred EEEEcCCCCCCCCCeeEEeccce---ecceeCC-----CceeeccCC-CCCCCcCCHHHHHHHHHHhhc
Q 031783 56 LELFLPEEYPMAAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLSIQALLS 115 (153)
Q Consensus 56 ~~i~fp~~YP~~pP~v~f~~~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~ 115 (153)
+.|.|+.+||..+|.|.+....| +||+... ..+|+-.-. ..|.+..++..+|..|..-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHH
Confidence 56899999999999887776543 5788765 789985443 679999999999999998874
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=91.63 E-value=0.31 Score=38.78 Aligned_cols=85 Identities=22% Similarity=0.391 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCC
Q 031783 7 PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG 86 (153)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (153)
-.+|.+|+.+|..+.. +.+. .++++....+.+.. ++-...++|.++.+||.++|.+...-|+
T Consensus 101 ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~--------- 162 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI--------- 162 (291)
T ss_dssp C-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS---------
T ss_pred HHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc---------
Confidence 4678888888876543 2222 36678888888872 2257789999999999999965433222
Q ss_pred ceeeccCCCCCCC-cCCHHHHHHHHHHhh
Q 031783 87 RICLDILKDKWSP-ALQIRTVLLSIQALL 114 (153)
Q Consensus 87 ~icl~~l~~~W~p-~~~i~~il~~i~~ll 114 (153)
.+...|.+ ..++.+++...+..+
T Consensus 163 -----~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 -----PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred -----chhhhhcccccCHHHHHHHHHHHH
Confidence 11236877 556777776665554
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.60 E-value=2.3 Score=32.19 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCCCe-EEEeCCCCCcEEEEEEECCCCC--CCCCcEEEEEEEcCCCCCCCCCeeEEe
Q 031783 9 RIIKETQRLLSEPAPGI-SASPSEDNMRYFNVMILGPTQS--PYEGGVFKLELFLPEEYPMAAPKVRFL 74 (153)
Q Consensus 9 Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~w~~~i~Gp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f~ 74 (153)
-..+|+..|..--+..+ ++. +.+...+.++|.-..+. -+.| .+.+.+.++++||..+|.+.+.
T Consensus 6 eQe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHhccchhhhhh--ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 34566777766433333 232 33333366666521111 2222 7899999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.83 E-value=4.8 Score=36.20 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEE-EEEEEcCCCCCC-CCCeeEEecc
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVF-KLELFLPEEYPM-AAPKVRFLTK 76 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f-~~~i~fp~~YP~-~pP~v~f~~~ 76 (153)
..+-|.+|+..|... -+.+.++-.+-.-..-.+++-||-.- -+|.+| ++.|.||-+||. .+|.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 445677777776543 33444543333445566667764433 355554 788999999997 6789998865
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=85.49 E-value=1.5 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=27.4
Q ss_pred eccceec---ceeCCCceeeccCCCCCCCcCCHHHHHHHHHHhhcCCCCCCc
Q 031783 74 LTKIYHP---NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 122 (153)
Q Consensus 74 ~~~i~Hp---nv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~ 122 (153)
.|++||. ||+.+|.||+.... .|.......+......|.+....++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCccCC
Confidence 3456654 99999999997643 3444444556666554444334444
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=75.11 E-value=9.8 Score=30.86 Aligned_cols=67 Identities=24% Similarity=0.526 Sum_probs=45.6
Q ss_pred CcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe-ccceecceeCCCceeeccCCCCCCCcCC--HHHHHHHH
Q 031783 34 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL-TKIYHPNIDKLGRICLDILKDKWSPALQ--IRTVLLSI 110 (153)
Q Consensus 34 ~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-~~i~Hpnv~~~G~icl~~l~~~W~p~~~--i~~il~~i 110 (153)
...+.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|.... +..+ .+|.+.-. +..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~-----l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK-----LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh-----cchh-hcCCCCCchHHHHHHHHH
Confidence 44566665 699999999999999999999999996 3457884321 1111 37877653 55555554
Q ss_pred HH
Q 031783 111 QA 112 (153)
Q Consensus 111 ~~ 112 (153)
..
T Consensus 121 ~~ 122 (333)
T PF06113_consen 121 RQ 122 (333)
T ss_pred HH
Confidence 43
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=72.52 E-value=5.8 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=28.9
Q ss_pred ccceec---ceeCCCceeeccCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCc
Q 031783 75 TKIYHP---NIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP 122 (153)
Q Consensus 75 ~~i~Hp---nv~~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~~ 122 (153)
|++||. ||+.+|.||+.... .|.. ++.+ +......|.+..+.++
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 345554 99999999997654 5544 4555 7777777665544443
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=54.71 E-value=21 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=22.0
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeEEe
Q 031783 50 EGGVFKLELFLPEEYP-MAAPKVRFL 74 (153)
Q Consensus 50 egg~f~~~i~fp~~YP-~~pP~v~f~ 74 (153)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3489999999999999 999998776
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.08 E-value=13 Score=20.77 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhC
Q 031783 7 PRRIIKETQRLLSE 20 (153)
Q Consensus 7 ~~Rl~~E~~~l~~~ 20 (153)
.|||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999998864
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=49.47 E-value=27 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeEEe
Q 031783 50 EGGVFKLELFLPEEYPMAAPKVRFL 74 (153)
Q Consensus 50 egg~f~~~i~fp~~YP~~pP~v~f~ 74 (153)
+.|.|.|+=.+|--||..+|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3488999999999999999999776
No 44
>PRK11700 hypothetical protein; Provisional
Probab=48.90 E-value=1e+02 Score=23.05 Aligned_cols=70 Identities=20% Similarity=0.431 Sum_probs=43.0
Q ss_pred CCcEEEEEEE-----CCCCCCCCCcEEEEEEEcCCC--------------CCCCCCeeEEe--cc------ceeccee-C
Q 031783 33 NMRYFNVMIL-----GPTQSPYEGGVFKLELFLPEE--------------YPMAAPKVRFL--TK------IYHPNID-K 84 (153)
Q Consensus 33 ~~~~w~~~i~-----Gp~~tpyegg~f~~~i~fp~~--------------YP~~pP~v~f~--~~------i~Hpnv~-~ 84 (153)
....|.+.+. |.+--|. -|.=|+++.+|.+ .|..++-|++. +| .-.|-|. +
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~-eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~ 165 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPH-EGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVT 165 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCC-CCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEe
Confidence 3455666543 2222233 3677888887743 45556655544 33 4577776 6
Q ss_pred CCceeeccCCCCCCCcCCHHHHHHH
Q 031783 85 LGRICLDILKDKWSPALQIRTVLLS 109 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~ 109 (153)
+|.+|+.+.+ ++++.|+.+
T Consensus 166 ~~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 166 DGGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred eCCEEEEEcC------ccHHHHHHh
Confidence 8999998876 777777654
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=48.60 E-value=28 Score=28.31 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.9
Q ss_pred CcEEEEEEEcCCCCCCCCCeeEEec
Q 031783 51 GGVFKLELFLPEEYPMAAPKVRFLT 75 (153)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~v~f~~ 75 (153)
+-.|-++|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3467788999999999999999987
No 46
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=6.1 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.1
Q ss_pred CCceeeccCCCCCCCcCCHHHHHHHHHHhhc
Q 031783 85 LGRICLDILKDKWSPALQIRTVLLSIQALLS 115 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 115 (153)
.+.+|++++...|+|.+|++..+.-++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999988877776653
No 47
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=43.62 E-value=73 Score=19.56 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhcC
Q 031783 109 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 151 (153)
Q Consensus 109 ~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a~ 151 (153)
.|..++..-++...+.++|...+.+--+.|...+-.-+.++|+
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666667789999999999889998877777776663
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=41.40 E-value=45 Score=24.03 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=21.3
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeEEe
Q 031783 51 GGVFKLELFLPEEYP-----MAAPKVRFL 74 (153)
Q Consensus 51 gg~f~~~i~fp~~YP-----~~pP~v~f~ 74 (153)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 388999999999999 899988776
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=41.00 E-value=95 Score=19.81 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred cEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCCcee
Q 031783 35 RYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRIC 89 (153)
Q Consensus 35 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G~ic 89 (153)
..|.+-+.|+.+..-..-+=+++..+.+.|+. |...+..+-|.-.-..=|..-
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFevte~GWGeF~ 54 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFEVTETGWGEFE 54 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEEEEEEESS--E
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCEEEEeEeccEE
Confidence 57999999888775566677888999999885 777666664433332234433
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=40.35 E-value=37 Score=27.34 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.3
Q ss_pred cEEEEEEEcCCCCCCCCCeeEEecc
Q 031783 52 GVFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
-.+.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677899999999999999999876
No 51
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.80 E-value=67 Score=23.88 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCee
Q 031783 6 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKV 71 (153)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v 71 (153)
..+||++|++.+.++....++..|.-+-.-.+.+.+.--.+ ...|.++-.+-|++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 36899999999999888888888877777778888774333 35677777666654
No 52
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=37.78 E-value=71 Score=20.23 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=25.8
Q ss_pred CcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 121 DPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 121 ~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
+|-+.+|...|.+-..+..+..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678899999999888888888888888875
No 53
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=35.13 E-value=54 Score=25.84 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=26.3
Q ss_pred CcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 121 DPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 121 ~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
...+.+|+..|.++++.|...+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 346899999999999999999999988765
No 54
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=34.85 E-value=1.5e+02 Score=22.58 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCC-------------------C
Q 031783 5 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY-------------------P 65 (153)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~Y-------------------P 65 (153)
++..||.+.++++++.. .+...-|.+.+....+.-| || |.+.+.|.++= -
T Consensus 9 s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~ 77 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYR 77 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEE
Confidence 45678888877776521 1222235555552211112 22 55555544332 2
Q ss_pred ---CCCCeeEEec--cceecceeCC
Q 031783 66 ---MAAPKVRFLT--KIYHPNIDKL 85 (153)
Q Consensus 66 ---~~pP~v~f~~--~i~Hpnv~~~ 85 (153)
..-|.+.|.+ ++.|-..++.
T Consensus 78 ~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 78 LKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EecCCceEEEEEeCCceEEEccCCC
Confidence 2348888886 3778776654
No 55
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=32.32 E-value=1.2e+02 Score=18.53 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHhhcCCCCCCcccHHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 109 SIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 109 ~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
.|+.++..-++...+.+++..+..+=-+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777888889999998888888888877777766655
No 56
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=1e+02 Score=26.10 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=11.0
Q ss_pred EEEEEEcCCCCCC
Q 031783 54 FKLELFLPEEYPM 66 (153)
Q Consensus 54 f~~~i~fp~~YP~ 66 (153)
..+.++||.+|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 4588999999996
No 57
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=30.67 E-value=1.1e+02 Score=19.87 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeeEEecc
Q 031783 49 YEGGVFKLELFLPEEYPMAAPKVRFLTK 76 (153)
Q Consensus 49 yegg~f~~~i~fp~~YP~~pP~v~f~~~ 76 (153)
-||..+.|...-|..|| .|.|.+.++
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888888998 588888765
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.15 E-value=79 Score=23.59 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeeEEe
Q 031783 51 GGVFKLELFLPEEYPM-----AAPKVRFL 74 (153)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~v~f~ 74 (153)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 77776554
No 59
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=29.99 E-value=1.7e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCeeEEeccceecceeCCC--ceee
Q 031783 48 PYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLG--RICL 90 (153)
Q Consensus 48 pyegg~f~~~i~fp~~YP~~pP~v~f~~~i~Hpnv~~~G--~icl 90 (153)
-=|...|..++.=... .||.+.|....-.+..|+|| -+|.
T Consensus 193 kNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 193 KNENTRYFGSYTGGAN---TPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp SSTTEEEEEEEE-SSS------EEEEESSEEEE---TTS--EEEC
T ss_pred cCcCceeeEeecCCCC---CCCeEEeccceeEEEEccCCcccccc
Confidence 3444555555554444 78999999999999999885 3663
No 60
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=27.64 E-value=62 Score=24.55 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=40.2
Q ss_pred CCCCeeEEeccceeccee--CCCceeeccCCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 031783 66 MAAPKVRFLTKIYHPNID--KLGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNPD 120 (153)
Q Consensus 66 ~~pP~v~f~~~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~ 120 (153)
..||.|.|-.+.|...|| +-|.|--.+...+| .|+-++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 379999999999999988 34544444444555 67778888888888888776643
No 61
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=26.44 E-value=1e+02 Score=22.82 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=18.3
Q ss_pred cEEEEEEEcCCCCCC-----CCCeeEEe
Q 031783 52 GVFKLELFLPEEYPM-----AAPKVRFL 74 (153)
Q Consensus 52 g~f~~~i~fp~~YP~-----~pP~v~f~ 74 (153)
|.|.|+-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 889999999999995 66666443
No 62
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=25.14 E-value=75 Score=27.86 Aligned_cols=29 Identities=38% Similarity=0.811 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeEEecc
Q 031783 47 SPYEGGVFKLELFLPEEYPM---AAPKVRFLTK 76 (153)
Q Consensus 47 tpyegg~f~~~i~fp~~YP~---~pP~v~f~~~ 76 (153)
+||.=|.|.+ +.+|++||+ +-|.++|.||
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888886 668999997 7799999997
No 63
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=24.58 E-value=1.7e+02 Score=24.29 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=25.0
Q ss_pred ceeC-CCceeeccCC---CCCCCcC--CHHHHHHHHHHh
Q 031783 81 NIDK-LGRICLDILK---DKWSPAL--QIRTVLLSIQAL 113 (153)
Q Consensus 81 nv~~-~G~icl~~l~---~~W~p~~--~i~~il~~i~~l 113 (153)
.|.+ +|+||..+-- +...|.. +|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 3443 8999986542 5677766 799999999988
No 64
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=24.12 E-value=38 Score=22.99 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=15.6
Q ss_pred CCceeeccCCCCCCCcCCHH
Q 031783 85 LGRICLDILKDKWSPALQIR 104 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~ 104 (153)
.|..|.-.++..|+|.+++.
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CceEEEEEcCCCCCCCCEEE
Confidence 45668778889999998843
No 65
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=24.11 E-value=76 Score=22.25 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.3
Q ss_pred CCCCCcEEEEEEECCCCCCCC
Q 031783 30 SEDNMRYFNVMILGPTQSPYE 50 (153)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpye 50 (153)
.++|...|.+++.|++|++..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 467888999999999988654
No 66
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.75 E-value=76 Score=18.93 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=12.0
Q ss_pred CCCCCcCCHHHHHHHHHHh
Q 031783 95 DKWSPALQIRTVLLSIQAL 113 (153)
Q Consensus 95 ~~W~p~~~i~~il~~i~~l 113 (153)
-+|.|.++|.+++......
T Consensus 36 LgW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp C----SSSHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHH
Confidence 4899999999999877654
No 67
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=23.54 E-value=2.3e+02 Score=20.61 Aligned_cols=65 Identities=14% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCC----CCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEeccc
Q 031783 9 RIIKETQRLLSEP----APGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI 77 (153)
Q Consensus 9 Rl~~E~~~l~~~~----~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~~~i 77 (153)
..-+|..++.... -.|+.+. +.+.=...+++.-+.-+|- --...+++.| .||-..||.|.|+.+.
T Consensus 9 kFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp~ 77 (177)
T PF14455_consen 9 KFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDPF 77 (177)
T ss_pred HHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEeccc
Confidence 4455666665433 1455543 3444445555554555552 2234566666 6899999999999873
No 68
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=23.23 E-value=1.5e+02 Score=24.14 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=28.3
Q ss_pred cEEEEEEECCCCC-CCCCcEEEEEEE---cCCCCCCCCCeeEEec
Q 031783 35 RYFNVMILGPTQS-PYEGGVFKLELF---LPEEYPMAAPKVRFLT 75 (153)
Q Consensus 35 ~~w~~~i~Gp~~t-pyegg~f~~~i~---fp~~YP~~pP~v~f~~ 75 (153)
.+|+..+.|-+++ -|++|.+++++. |-.- =.+.|+|||-.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 3689999996665 888999988776 3222 33667998864
No 69
>PRK05414 urocanate hydratase; Provisional
Probab=22.18 E-value=1e+02 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 125 ENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 125 ~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
.|+.++-.+|+++|.+.|+++..++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 67888889999999999999988775
No 70
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=22.03 E-value=64 Score=19.38 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhh
Q 031783 7 PRRIIKETQRLLS 19 (153)
Q Consensus 7 ~~Rl~~E~~~l~~ 19 (153)
.+||++|+.++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 3699999998764
No 71
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=21.86 E-value=1e+02 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 125 ENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 125 ~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
+|+.++-.+|+++|.+.|++...++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 67778888999999999999988775
No 72
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=21.49 E-value=1.5e+02 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.015 Sum_probs=22.7
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhc
Q 031783 125 ENIAKHWKTNEAEAVETAKEWTRLYA 150 (153)
Q Consensus 125 ~ea~~~~~~~~~~f~~~a~~~~~~~a 150 (153)
.|+.++-.+|+++|.+.|++...++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 67778888999999999999988775
No 73
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=21.38 E-value=58 Score=23.72 Aligned_cols=68 Identities=10% Similarity=0.192 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe---ccceecceeCCC
Q 031783 10 IIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFL---TKIYHPNIDKLG 86 (153)
Q Consensus 10 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~---~~i~Hpnv~~~G 86 (153)
+..++++....-..|+++-...++ +++ .|-+-.--..+. .+||.|-+. +..-|+.+...|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 345688888888889887542211 111 121111112222 369988876 235688999999
Q ss_pred ceeeccCC
Q 031783 87 RICLDILK 94 (153)
Q Consensus 87 ~icl~~l~ 94 (153)
.+|+++|.
T Consensus 69 ~F~VnvL~ 76 (170)
T PRK15486 69 KLCINVLN 76 (170)
T ss_pred eEEEEECh
Confidence 99999986
No 74
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=21.14 E-value=2.5e+02 Score=24.89 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeC----CCCCcEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCC
Q 031783 8 RRIIKETQRLLSEPAPGISASPS----EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMA 67 (153)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~----~~~~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~ 67 (153)
.-|++|+..|.. -|.|.++ ++|-.+..|.|. -+.-| .+++..|.+||..
T Consensus 622 ~vlqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq 674 (742)
T KOG4274|consen 622 EVLQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQ 674 (742)
T ss_pred HHHHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeecccccccc
Confidence 457788877754 3555554 334333444444 23333 4899999999965
No 75
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.97 E-value=1e+02 Score=20.68 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCcEEEE
Q 031783 36 YFNVMILGPTQSPYEGGVFKL 56 (153)
Q Consensus 36 ~w~~~i~Gp~~tpyegg~f~~ 56 (153)
.|.|.|-| +..|+|-.|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999987 56899999886
Done!