Query 031784
Match_columns 153
No_of_seqs 98 out of 114
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14412 AHH: A nuclease famil 16.8 70 0.0015 22.6 0.9 19 20-39 40-58 (109)
2 PF11401 Tetrabrachion: Tetrab 16.3 3.9 8.5E-05 27.8 -5.2 23 13-35 9-31 (49)
3 PF09794 Avl9: Transport prote 14.6 70 0.0015 28.9 0.6 20 1-21 93-112 (379)
4 PF11135 DUF2888: Protein of u 10.4 1.7E+02 0.0037 23.7 1.6 29 4-32 78-106 (144)
5 PF09984 DUF2222: Uncharacteri 9.0 3E+02 0.0066 21.7 2.4 34 8-43 94-127 (146)
6 PF02531 PsaD: PsaD; InterPro 8.7 2.3E+02 0.005 23.1 1.7 33 14-46 40-72 (139)
7 CHL00145 psaD photosystem I su 8.6 1.2E+02 0.0027 24.6 0.1 25 13-37 39-63 (139)
8 PF01834 XRCC1_N: XRCC1 N term 8.4 2.2E+02 0.0048 23.2 1.5 24 7-34 4-27 (153)
9 PF15249 GLTSCR1: Glioma tumor 7.6 1.5E+02 0.0033 21.8 0.2 10 115-124 27-36 (109)
10 PF08094 Toxin_24: Conotoxin T 7.4 1.9E+02 0.0042 18.4 0.6 8 2-9 20-27 (33)
No 1
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=16.81 E-value=70 Score=22.62 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.8
Q ss_pred eeecccccccceeeccCCCc
Q 031784 20 ISYDSIHSAENLLYLKNPTK 39 (153)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~ 39 (153)
+-|| |+.++|++||.+..+
T Consensus 40 ~g~~-in~~~Ngv~Lp~~~~ 58 (109)
T PF14412_consen 40 YGID-INDPENGVWLPNSEK 58 (109)
T ss_pred cCCC-cCCccceeeeeccCC
Confidence 3467 999999999987766
No 2
>PF11401 Tetrabrachion: Tetrabrachion; InterPro: IPR021535 Tetrabrachion forms a parallel right-handed coiled coil structure with hydrophobic interactions and salt bridges forming a thermostable tetrameric structure. It contains large hydrophobic cavities. No function is known for this family of proteins []. ; PDB: 1FE6_C 1YBK_A.
Probab=16.34 E-value=3.9 Score=27.77 Aligned_cols=23 Identities=48% Similarity=0.691 Sum_probs=19.0
Q ss_pred EEEeeeeeeecccccccceeecc
Q 031784 13 VVYRLPVISYDSIHSAENLLYLK 35 (153)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (153)
+||||-||--|-..|..||+-|.
T Consensus 9 ivyrltviiddryeslknlitlr 31 (49)
T PF11401_consen 9 IVYRLTVIIDDRYESLKNLITLR 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEEccHHHHHHHHHhhh
Confidence 57999999988888888887654
No 3
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=14.64 E-value=70 Score=28.93 Aligned_cols=20 Identities=55% Similarity=0.730 Sum_probs=16.6
Q ss_pred CCCCCCcccceEEEEeeeeee
Q 031784 1 MTRGTPQKLSTVVVYRLPVIS 21 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (153)
+|||+-|| +-||+-|+|+..
T Consensus 93 vtRs~vQK-sVvViS~~P~fg 112 (379)
T PF09794_consen 93 VTRSTVQK-SVVVISRLPFFG 112 (379)
T ss_pred ccchheEE-EEEEEECCCcHH
Confidence 58999999 678889999653
No 4
>PF11135 DUF2888: Protein of unknown function (DUF2888); InterPro: IPR022600 This entry is represented by Frog virus 3, Orf82R; it is a family of uncharacterised Ranaviral proteins, a number of which are annotated as immediate early protein ICP-18.
Probab=10.43 E-value=1.7e+02 Score=23.69 Aligned_cols=29 Identities=38% Similarity=0.346 Sum_probs=24.0
Q ss_pred CCCcccceEEEEeeeeeeeccccccccee
Q 031784 4 GTPQKLSTVVVYRLPVISYDSIHSAENLL 32 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (153)
.|||-|+..+.-||--|.+|+-..-||+-
T Consensus 78 ~tpq~ls~~~y~rlhpv~~~~g~~~~~~e 106 (144)
T PF11135_consen 78 DTPQVLSLFFYKRLHPVEWHSGCDYENLE 106 (144)
T ss_pred CCcceEEeEeeeccccccccCccccccee
Confidence 48999999888899889998877777753
No 5
>PF09984 DUF2222: Uncharacterized signal transduction histidine kinase domain (DUF2222); InterPro: IPR019247 This entry is found at the N terminus of various BarA-like signal transduction histidine kinases. These proteins are involved in the regulation of carbon metabolism via the csrA/csrB regulatory system. The role of this domain has not, as yet, been established. ; GO: 0004673 protein histidine kinase activity
Probab=8.96 E-value=3e+02 Score=21.72 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.0
Q ss_pred ccceEEEEeeeeeeecccccccceeeccCCCccccc
Q 031784 8 KLSTVVVYRLPVISYDSIHSAENLLYLKNPTKTLGV 43 (153)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (153)
+....+++|.|||+-+.. .++....+.+.+.||.
T Consensus 94 ~~~d~lilr~PI~~e~~~--~~~~~~~~~~~~~LGy 127 (146)
T PF09984_consen 94 HSGDSLILRTPIISESNF--ESDQATAKSQQQPLGY 127 (146)
T ss_pred ecCCEEEEEcceecCCcC--cCcccccCcCCCcceE
Confidence 344568999999987633 4445556666777774
No 6
>PF02531 PsaD: PsaD; InterPro: IPR003685 PsaD is a small, extrinsic polypeptide located on the stromal side (cytoplasmic side in cyanobacteria) of the photosystem I reaction centre complex. It is required for native assembly of PSI reaction clusters and is implicated in the electrostatic binding of ferredoxin within the reaction centre []. PsaD forms a dimer in solution which is bound by PsaE however PsaD is monomeric in its native complexed PSI environment [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_D 2O01_D 2WSC_D 2WSE_D 1JB0_D 3PCQ_D.
Probab=8.67 E-value=2.3e+02 Score=23.07 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEeeeeeeecccccccceeeccCCCcccccccc
Q 031784 14 VYRLPVISYDSIHSAENLLYLKNPTKTLGVREQ 46 (153)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (153)
||-+|.=--.-.+.-||||||---..-|..-.|
T Consensus 40 vFEmPTGGAA~M~~G~NLlylARKEQclALgtQ 72 (139)
T PF02531_consen 40 VFEMPTGGAAIMREGENLLYLARKEQCLALGTQ 72 (139)
T ss_dssp EEETTTTCEEEE-SCCEEEEESSCCCCCCCCCC
T ss_pred eEeccCchhHhhhcCchhhhhHHHHHHHHHHHH
Confidence 566676666667889999999766555554444
No 7
>CHL00145 psaD photosystem I subunit II; Validated
Probab=8.58 E-value=1.2e+02 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=17.9
Q ss_pred EEEeeeeeeecccccccceeeccCC
Q 031784 13 VVYRLPVISYDSIHSAENLLYLKNP 37 (153)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (153)
-||-+|.=--.-.+.-||||||---
T Consensus 39 qvFEmPTGGAA~M~~G~NLlylARK 63 (139)
T CHL00145 39 QIFEMPTGGAAIMRNGENLLYLARK 63 (139)
T ss_pred ceeecCCchhhhhhcCchhhhhhHH
Confidence 3566676666667889999998543
No 8
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=8.44 E-value=2.2e+02 Score=23.17 Aligned_cols=24 Identities=50% Similarity=0.583 Sum_probs=16.1
Q ss_pred cccceEEEEeeeeeeecccccccceeec
Q 031784 7 QKLSTVVVYRLPVISYDSIHSAENLLYL 34 (153)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (153)
-|+..||-+ =|-|..|-|||||--
T Consensus 4 ik~k~VvS~----SSed~~~~A~NLL~~ 27 (153)
T PF01834_consen 4 IKLKHVVSF----SSEDPVHPAENLLKS 27 (153)
T ss_dssp CGEEEEEEE----SSS-SSSHGGGGSCG
T ss_pred ceeeEEEEE----eCCCCCCchhhccCc
Confidence 355555543 477899999999953
No 9
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=7.58 E-value=1.5e+02 Score=21.78 Aligned_cols=10 Identities=50% Similarity=1.092 Sum_probs=8.5
Q ss_pred hhhcccchhh
Q 031784 115 CVETMLPFHT 124 (153)
Q Consensus 115 cveSLLPLHS 124 (153)
.++-|||||-
T Consensus 27 A~~RLLPYHv 36 (109)
T PF15249_consen 27 AVERLLPYHV 36 (109)
T ss_pred HHHHhcchhh
Confidence 4889999995
No 10
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=7.44 E-value=1.9e+02 Score=18.36 Aligned_cols=8 Identities=63% Similarity=0.945 Sum_probs=4.4
Q ss_pred CCCCCccc
Q 031784 2 TRGTPQKL 9 (153)
Q Consensus 2 ~~~~~~~~ 9 (153)
.||.|||-
T Consensus 20 ~rgnpqkc 27 (33)
T PF08094_consen 20 GRGNPQKC 27 (33)
T ss_dssp CSSSS-CE
T ss_pred cCCCcccc
Confidence 36777773
Done!