Query 031784
Match_columns 153
No_of_seqs 98 out of 114
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 08:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lwha1 b.71.1.1 (A:392-441) 4 32.8 16 0.0012 22.5 2.7 35 11-49 11-46 (50)
2 d1jb0d_ d.187.1.1 (D:) Photosy 12.1 33 0.0024 24.8 1.0 25 13-37 37-61 (138)
3 d1914a1 d.49.1.1 (A:4004-4081) 6.8 20 0.0014 23.7 -2.0 11 30-40 12-22 (78)
4 d2gycb1 b.43.3.2 (B:1-209) Rib 6.7 1.5E+02 0.011 21.2 2.8 24 10-36 168-191 (209)
5 d2zjrb1 b.43.3.2 (B:1-205) Rib 6.6 1.5E+02 0.011 21.5 2.8 24 10-36 163-186 (205)
6 d2hwna1 a.31.1.1 (A:5-43) cAMP 5.7 71 0.0051 18.2 0.4 14 43-56 17-30 (39)
7 d1epwa2 b.42.4.2 (A:1080-1290) 5.3 1.1E+02 0.0083 23.1 1.4 18 35-52 107-124 (211)
8 d1mhca2 d.19.1.1 (A:1-181) Cla 5.3 1.4E+02 0.01 20.1 1.8 24 3-26 17-40 (181)
9 d1xnta_ b.18.1.8 (A:) N-termin 5.1 85 0.0062 22.7 0.5 14 20-33 13-26 (151)
10 d1bcoa1 b.48.1.1 (A:481-560) m 5.1 1.2E+02 0.0085 19.1 1.2 14 4-17 55-69 (80)
No 1
>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}
Probab=32.77 E-value=16 Score=22.51 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=25.4
Q ss_pred eEEEEeeeeeeecccccccceeeccCCCcc-ccccccCCC
Q 031784 11 TVVVYRLPVISYDSIHSAENLLYLKNPTKT-LGVREQPNS 49 (153)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 49 (153)
...|||| ||.-||..-+--|.|-.-. -||+-||-+
T Consensus 11 k~lvyrl----~d~~~slkv~hnls~~e~vfegv~~~py~ 46 (50)
T d1lwha1 11 KFLVYRL----YDDQHSLKVFHNLSGEEVVFEGVKMKPYK 46 (50)
T ss_dssp SEEEEEE----EETTEEEEEEEECSSSCCEETTEECCTTC
T ss_pred eEEEEEE----eeCCceEEEEEecCCCeEEEEEEEeccce
Confidence 4569998 8988887766666665443 489988865
No 2
>d1jb0d_ d.187.1.1 (D:) Photosystem I subunit PsaD {Synechococcus elongatus [TaxId: 32046]}
Probab=12.10 E-value=33 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEeeeeeeecccccccceeeccCC
Q 031784 13 VVYRLPVISYDSIHSAENLLYLKNP 37 (153)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (153)
-||-+|.=----.|..||||||---
T Consensus 37 qvFEmPTGGAA~M~~G~Nlly~ARK 61 (138)
T d1jb0d_ 37 QVFEMPTAGAAVMREGENLVYFARK 61 (138)
T ss_dssp EEEECTTSSEEEECSEEEEEEESSH
T ss_pred ceeeccCchhhhhccCcchhhhhHH
Confidence 3677777666678999999998643
No 3
>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.81 E-value=20 Score=23.67 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=8.6
Q ss_pred ceeeccCCCcc
Q 031784 30 NLLYLKNPTKT 40 (153)
Q Consensus 30 ~~~~~~~~~~~ 40 (153)
.-||++||.|+
T Consensus 12 ~~Ly~~~P~kt 22 (78)
T d1914a1 12 EKLYLADPMKV 22 (78)
T ss_dssp HHHHHHCTTTC
T ss_pred HHHHHhCCCce
Confidence 34789999886
No 4
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=6.66 E-value=1.5e+02 Score=21.15 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.8
Q ss_pred ceEEEEeeeeeeecccccccceeeccC
Q 031784 10 STVVVYRLPVISYDSIHSAENLLYLKN 36 (153)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (153)
..+.+|.|-|+..|. .+|+||+|-
T Consensus 168 ~~~T~~n~~I~~Id~---~~n~i~vkG 191 (209)
T d2gycb1 168 ERVTVQSLDVVRVDA---ERNLLLVKG 191 (209)
T ss_dssp CEEEEEEEEEEECCS---SSSEEEEES
T ss_pred ceEEEecCEEEEEeC---CCCEEEEEe
Confidence 467899999998764 679999985
No 5
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.63 E-value=1.5e+02 Score=21.48 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=19.5
Q ss_pred ceEEEEeeeeeeecccccccceeeccC
Q 031784 10 STVVVYRLPVISYDSIHSAENLLYLKN 36 (153)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (153)
..+.+|.|-|+..|. .+||||+|-
T Consensus 163 ~~~Tv~nl~V~~id~---e~nli~vkG 186 (205)
T d2zjrb1 163 ERVTVQNLEVVEIRA---GENLILVKG 186 (205)
T ss_dssp CEEEEEEEEEEEEET---TTTEEEEES
T ss_pred eEEEEeCCEEEEEeC---CCCEEEEec
Confidence 467889999998764 579999985
No 6
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.74 E-value=71 Score=18.20 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.2
Q ss_pred ccccCCCcchhhhh
Q 031784 43 VREQPNSINSKTMS 56 (153)
Q Consensus 43 ~~~~~~~~~~~tmA 56 (153)
.||||..|-.|.+.
T Consensus 17 LR~qP~di~~faa~ 30 (39)
T d2hwna1 17 LRQQPPDLVDFAVE 30 (39)
T ss_dssp HHHCCSCHHHHHHH
T ss_pred HHHCCchHHHHHHH
Confidence 58999998887654
No 7
>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}
Probab=5.32 E-value=1.1e+02 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=15.4
Q ss_pred cCCCccccccccCCCcch
Q 031784 35 KNPTKTLGVREQPNSINS 52 (153)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ 52 (153)
++..|.|++++++++.+.
T Consensus 107 ~~~ek~l~l~~is~~~~~ 124 (211)
T d1epwa2 107 KKEEEKLFLAPISDSDEF 124 (211)
T ss_dssp CSSEEECEEEESCCCTTE
T ss_pred cCcceEEEEEEecCCCCc
Confidence 788899999999998764
No 8
>d1mhca2 d.19.1.1 (A:1-181) Class I MHC, alpha-1 and alpha-2 domains {Mouse (Mus musculus), H-2M3 [TaxId: 10090]}
Probab=5.31 E-value=1.4e+02 Score=20.10 Aligned_cols=24 Identities=38% Similarity=0.428 Sum_probs=18.5
Q ss_pred CCCCcccceEEEEeeeeeeecccc
Q 031784 3 RGTPQKLSTVVVYRLPVISYDSIH 26 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (153)
.|.|+-...+.|=..++..|||.+
T Consensus 17 ~g~P~f~~vg~vDd~~f~~YdS~~ 40 (181)
T d1mhca2 17 RGEPQYISVGYVDDVQFQRCDSIE 40 (181)
T ss_dssp TTSCSEEEEEEETTEEEEEEEEET
T ss_pred CCCCeEEEEEEECCeEEEEecCCC
Confidence 456777777777789999999953
No 9
>d1xnta_ b.18.1.8 (A:) N-terminal domain of xrcc1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.13 E-value=85 Score=22.65 Aligned_cols=14 Identities=64% Similarity=0.638 Sum_probs=12.0
Q ss_pred eeecccccccceee
Q 031784 20 ISYDSIHSAENLLY 33 (153)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (153)
=|-|.-|-|||||-
T Consensus 13 SSeD~~~~a~NLL~ 26 (151)
T d1xnta_ 13 SSQDSTHCAENLLK 26 (151)
T ss_dssp ESCCSTTCGGGGGG
T ss_pred cccCCCCchhhccC
Confidence 36789999999997
No 10
>d1bcoa1 b.48.1.1 (A:481-560) mu transposase, C-terminal domain {Bacteriophage mu [TaxId: 10677]}
Probab=5.12 E-value=1.2e+02 Score=19.09 Aligned_cols=14 Identities=57% Similarity=0.695 Sum_probs=10.5
Q ss_pred CCCccc-ceEEEEee
Q 031784 4 GTPQKL-STVVVYRL 17 (153)
Q Consensus 4 ~~~~~~-~~~~~~~~ 17 (153)
=.|+.| ++|.||.+
T Consensus 55 yDp~Dl~~~V~Vy~~ 69 (80)
T d1bcoa1 55 FDPQQLHSTVYCYTL 69 (80)
T ss_dssp ECGGGTTTEEEEECT
T ss_pred EChHHCCCeEEEEeC
Confidence 368887 78888864
Done!