Query 031785
Match_columns 153
No_of_seqs 124 out of 1032
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_X Ribosomal protein L27; 100.0 2.9E-52 1E-56 339.4 -3.2 138 1-139 5-152 (198)
2 2zjr_T 50S ribosomal protein L 100.0 1.1E-48 3.6E-53 287.4 7.9 87 44-131 1-87 (91)
3 3v2d_0 50S ribosomal protein L 100.0 1.4E-47 4.9E-52 278.5 8.2 84 44-128 1-84 (85)
4 3r8s_W 50S ribosomal protein L 100.0 7.8E-44 2.7E-48 254.4 8.5 76 53-128 1-76 (76)
5 2ftc_O L27MT, MRP-L27, mitocho 100.0 1.2E-42 4.1E-47 244.6 6.4 68 45-112 1-69 (69)
6 2xha_A NUSG, transcription ant 95.4 0.008 2.7E-07 48.7 2.9 43 69-131 86-128 (193)
7 2xhc_A Transcription antitermi 95.3 0.012 4.2E-07 50.7 3.8 49 69-137 126-177 (352)
8 3m7n_A Putative uncharacterize 93.4 0.16 5.5E-06 39.2 6.0 55 72-135 2-56 (179)
9 2je6_I RRP4, exosome complex R 92.3 0.29 9.9E-06 40.0 6.3 51 70-130 15-67 (251)
10 2nn6_I 3'-5' exoribonuclease C 89.1 0.099 3.4E-06 41.6 0.7 58 68-129 16-73 (209)
11 2ba0_A Archeal exosome RNA bin 86.7 0.61 2.1E-05 37.5 4.0 48 72-129 3-50 (229)
12 2d5d_A Methylmalonyl-COA decar 79.6 1.5 5.1E-05 27.5 2.9 37 66-112 19-55 (74)
13 2nn6_H Exosome complex exonucl 79.2 2 6.8E-05 36.3 4.4 51 70-129 38-88 (308)
14 1dcz_A Transcarboxylase 1.3S s 78.9 1.6 5.4E-05 27.9 2.9 38 66-113 22-59 (77)
15 1z6h_A Biotin/lipoyl attachmen 74.9 2.2 7.5E-05 26.8 2.7 37 66-112 13-49 (72)
16 2z0s_A Probable exosome comple 72.9 0.91 3.1E-05 36.3 0.6 51 71-129 9-59 (235)
17 1qjo_A Dihydrolipoamide acetyl 71.6 3.7 0.00013 26.4 3.2 38 65-112 19-56 (80)
18 1iyu_A E2P, dihydrolipoamide a 69.5 2.4 8.3E-05 27.4 2.0 38 65-112 17-54 (79)
19 2ejm_A Methylcrotonoyl-COA car 68.0 4.1 0.00014 27.9 3.0 37 66-112 28-64 (99)
20 1ghj_A E2, E2, the dihydrolipo 67.7 3.4 0.00012 26.7 2.4 38 65-112 20-57 (79)
21 1bdo_A Acetyl-COA carboxylase; 67.6 3.8 0.00013 26.5 2.6 36 67-112 26-61 (80)
22 2auk_A DNA-directed RNA polyme 65.7 4.4 0.00015 31.7 3.1 36 67-114 65-100 (190)
23 2lmc_B DNA-directed RNA polyme 64.6 5.2 0.00018 28.2 3.0 33 97-130 21-53 (84)
24 2l5t_A Lipoamide acyltransfera 63.8 2.4 8.3E-05 27.2 1.1 37 66-112 21-57 (77)
25 2dn8_A Acetyl-COA carboxylase 59.6 7.2 0.00024 26.6 3.0 36 66-111 31-66 (100)
26 2k7v_A Dihydrolipoyllysine-res 52.5 2.1 7.3E-05 28.4 -0.7 36 66-111 16-51 (85)
27 2nn6_G Exosome complex exonucl 51.7 19 0.00064 30.2 4.8 58 71-129 39-120 (289)
28 3lu0_D DNA-directed RNA polyme 51.6 7.5 0.00026 39.4 2.7 60 68-130 1109-1182(1407)
29 2kcc_A Acetyl-COA carboxylase 51.5 12 0.00041 24.7 3.0 38 66-113 19-56 (84)
30 3crk_C Dihydrolipoyllysine-res 51.5 12 0.00039 24.9 2.9 39 64-112 23-61 (87)
31 1gjx_A Pyruvate dehydrogenase; 45.7 3.9 0.00013 26.5 -0.2 36 66-111 21-56 (81)
32 2jku_A Propionyl-COA carboxyla 44.2 5.5 0.00019 27.1 0.3 36 66-111 39-74 (94)
33 2dnc_A Pyruvate dehydrogenase 40.7 19 0.00066 24.7 2.7 39 64-112 25-63 (98)
34 1k8m_A E2 component of branche 33.1 19 0.00066 24.3 1.7 39 63-111 21-59 (93)
35 2dne_A Dihydrolipoyllysine-res 33.0 27 0.00094 24.5 2.5 39 64-112 25-63 (108)
36 1pmr_A Dihydrolipoyl succinylt 31.9 6.8 0.00023 25.4 -0.8 37 65-111 21-57 (80)
37 4hu2_A Probable conserved lipo 27.1 53 0.0018 26.2 3.5 63 75-139 49-121 (198)
38 3tuf_B Stage II sporulation pr 26.5 86 0.0029 25.4 4.8 41 85-125 77-119 (245)
39 1y8o_B Dihydrolipoyllysine-res 25.1 50 0.0017 24.2 2.9 39 63-111 44-82 (128)
40 2qj8_A MLR6093 protein; struct 24.5 65 0.0022 26.2 3.7 40 70-115 274-313 (332)
41 3nyy_A Putative glycyl-glycine 24.2 71 0.0024 25.8 3.8 40 87-126 123-166 (252)
42 3lu0_D DNA-directed RNA polyme 23.4 51 0.0017 33.7 3.3 36 67-114 1004-1039(1407)
43 3f6q_B LIM and senescent cell 20.3 48 0.0016 20.1 1.6 22 70-91 17-38 (72)
No 1
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.9e-52 Score=339.36 Aligned_cols=138 Identities=42% Similarity=0.472 Sum_probs=83.9
Q ss_pred CchhhhHHHHhhhhhhhhhhhceeccccc----CCCCCCCc------ceeeeeeeeecccccCCCCCCCCCcccceeeeC
Q 031785 1 MSMFNFANTLCKRLNVKELVSNVSVYGSV----ADGSAGGL------SLMFRRWATKKTAGSTKNGRDSKPKNLGVKKFG 70 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~r~A~KK~~GStkNGRdS~~KrLGvK~~~ 70 (153)
|+|+..|...|++|++.++.+.+..-.+. ++..+.|+ ..+++||||||++|||+|||||++||||+|++|
T Consensus 5 ~~~~~~l~~~f~g~s~sssssf~~~~~~~~~~~~~~~~~p~~~~~~~~~l~VRmAhKKggGSTkNGRDS~~KRLGVK~~g 84 (198)
T 3bbo_X 5 TSMSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRLGVKIYG 84 (198)
T ss_dssp ------------------------------------------------------CCCCSSCCCCCCCCCCCCCCSCSSSB
T ss_pred HHHHHHHHHHhcccccccccceecccccccccccccccccccccccchhhheeeeeccCCCCCCCCCCCCCceeeEEecC
Confidence 67888999999999999887766333222 23333332 245799999999999999999999999999999
Q ss_pred CeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCCCcccccccc
Q 031785 71 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYAN 139 (153)
Q Consensus 71 Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~~~p~~~~ 139 (153)
||+|.||+||||||||+||||+||||||||||||+++|+|+|+++ .++|+||+|+|++.+++||...+
T Consensus 85 Gq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~-~~~Rk~VsV~p~~~~~~~p~~~r 152 (198)
T 3bbo_X 85 DQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKF-GPDRKKISVYPREIVPENPNSYR 152 (198)
T ss_dssp CCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSS-CCCCSCCCSSCCCCC--------
T ss_pred CeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEc-CCCcEEEEEEeCCccccCchhhh
Confidence 999999999999999999999999999999999999999999975 37999999999999999998443
No 2
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=1.1e-48 Score=287.38 Aligned_cols=87 Identities=56% Similarity=0.940 Sum_probs=82.1
Q ss_pred eeeecccccCCCCCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEE
Q 031785 44 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 123 (153)
Q Consensus 44 ~A~KK~~GStkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V 123 (153)
|||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|+++. ++|+||
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V 79 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFI 79 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEE
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcC-CCcEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999875 899999
Q ss_pred EeEeCCCC
Q 031785 124 HVEPKEGH 131 (153)
Q Consensus 124 ~V~p~~~~ 131 (153)
+|+|++.|
T Consensus 80 ~V~p~~~~ 87 (91)
T 2zjr_T 80 SIEAAQTE 87 (91)
T ss_dssp EECCCC--
T ss_pred EEEeChhh
Confidence 99997654
No 3
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=1.4e-47 Score=278.50 Aligned_cols=84 Identities=56% Similarity=0.902 Sum_probs=73.9
Q ss_pred eeeecccccCCCCCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEE
Q 031785 44 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 123 (153)
Q Consensus 44 ~A~KK~~GStkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V 123 (153)
|||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++. .++|+||
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~-~~~r~~V 79 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-GRLGRYV 79 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEEC-GGGCEEE
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEc-CCCCEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987 3789999
Q ss_pred EeEeC
Q 031785 124 HVEPK 128 (153)
Q Consensus 124 ~V~p~ 128 (153)
+|+|+
T Consensus 80 sV~p~ 84 (85)
T 3v2d_0 80 HVRPL 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99995
No 4
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=7.8e-44 Score=254.40 Aligned_cols=76 Identities=58% Similarity=1.015 Sum_probs=73.5
Q ss_pred CCCCCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeC
Q 031785 53 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 128 (153)
Q Consensus 53 tkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~ 128 (153)
|+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|+++..++|+||+|+|+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~ 76 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE 76 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence 6999999999999999999999999999999999999999999999999999999999999876679999999985
No 5
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=1.2e-42 Score=244.55 Aligned_cols=68 Identities=51% Similarity=0.841 Sum_probs=67.3
Q ss_pred eeecccccCCC-CCCCCCcccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 45 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 45 A~KK~~GStkN-GRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
||||++|||+| ||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 79999999999 999999999999999999999999999999999999999999999999999999997
No 6
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.42 E-value=0.008 Score=48.67 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=34.1
Q ss_pred eCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCCC
Q 031785 69 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH 131 (153)
Q Consensus 69 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~ 131 (153)
-+|+.|.+|+||+ +|+.+.|-++|+|.|.+ +++.|-|.|+.++
T Consensus 86 ~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk----gkrrivI~~~~Ge 128 (193)
T 2xha_A 86 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE----RMKKVVVQTPDGE 128 (193)
T ss_dssp CTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE----EEEEEEEECTTSC
T ss_pred CCCCEEcCCCEEe----------------cCCeEEEccceEEEECC----CeEEEEEECCCCC
Confidence 3566677777666 99999999999999987 4666778887664
No 7
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.29 E-value=0.012 Score=50.68 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=36.3
Q ss_pred eCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCCCc---ccccc
Q 031785 69 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLY 137 (153)
Q Consensus 69 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~---~~p~~ 137 (153)
-+|+.|.+|+||+ ||+.+.|-+||+|.|.++ ++.|-|.|+.++. +.|.+
T Consensus 126 ~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~----kr~i~i~~~~g~~~eylip~~ 177 (352)
T 2xhc_A 126 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER----MKKVVVQTPDGEQDVYYIPLD 177 (352)
T ss_dssp CTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE----EEEEEEECTTSCEEEEEEEGG
T ss_pred CCCCEEccCcEEe----------------cCceEEeccceEEEECCc----EEEEEEECCCCCEEEEEEcCC
Confidence 3566666666665 999999999999999985 5667788877653 45544
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=93.41 E-value=0.16 Score=39.18 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=41.5
Q ss_pred eEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCCCcccc
Q 031785 72 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHP 135 (153)
Q Consensus 72 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~~~p 135 (153)
+.|.||+.|.-. ..|.||.++.. .|..|+|..-|.|++. .+.|+|.|.......|
T Consensus 2 ~iV~PGd~l~~~--~~~~~G~Gty~-~~~~i~as~~G~v~~~------~~~v~V~~~~~~~y~p 56 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVYE-EGGELFAAVAGKLIIK------DRVAKVESISPIPEIV 56 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEEE-ETTEEEESSSEEEEEE------TTEEEEEESSCCCCCC
T ss_pred eEEcCCCCCCCC--CCEeccCCEEE-eCCEEEEEEEEEEEEe------CCEEEEEECCCCcccC
Confidence 478999999754 35899999988 4889999999999982 2467888864433333
No 9
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=92.29 E-value=0.29 Score=40.01 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=41.2
Q ss_pred CCeEeecCcEEeecccCeEeCCC--CeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCC
Q 031785 70 GGERVIPGNIIVRQRGTRFHPGD--YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 130 (153)
Q Consensus 70 ~Gq~V~~G~IIvRQRGtkfhPG~--NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 130 (153)
+++.|.||+.|... .|.||. ++.. .|..|||.+-|.|.+.. +.|+|.|...
T Consensus 15 ~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~~ 67 (251)
T 2je6_I 15 PRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEG 67 (251)
T ss_dssp SSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCC
T ss_pred CCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC------CEEEEEECCC
Confidence 58899999999853 489999 9876 57889999999998642 2588888665
No 10
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=89.05 E-value=0.099 Score=41.62 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.7
Q ss_pred eeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCC
Q 031785 68 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 129 (153)
Q Consensus 68 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 129 (153)
..+++.|.||+.|... ..|.||.|+.. .|..|||.+-|.|.+... ....+.|+|.|..
T Consensus 16 ~~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~-~~~~~vi~V~p~~ 73 (209)
T 2nn6_I 16 APPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVVRET 73 (209)
T ss_dssp ----CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBCCSC
T ss_pred cCCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEecc-CCcccEEEEecCC
Confidence 3457889999999854 35899999876 577899999999886532 1234557777654
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=86.68 E-value=0.61 Score=37.46 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=36.9
Q ss_pred eEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCC
Q 031785 72 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 129 (153)
Q Consensus 72 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 129 (153)
+.|.||+.|.. ..|.||.|+.. .|..|+|.+-|.|.+.. +.|+|.|..
T Consensus 3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE------THVRVIPLK 50 (229)
T ss_dssp CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS------SCEEEEECS
T ss_pred CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC------CEEEEEeCC
Confidence 57999999973 34899999987 68899999999988542 137777644
No 12
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=79.58 E-value=1.5 Score=27.54 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.8
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
+..-.|+.|.+|++|++-.-.+. ..+|.|+.+|+|.-
T Consensus 19 ~~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp ECCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence 34558999999999998654433 46899999999964
No 13
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=79.16 E-value=2 Score=36.35 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCC
Q 031785 70 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 129 (153)
Q Consensus 70 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 129 (153)
+++.|.||+.|... -.|.||.|+.. .|..|||.+-|.|... .+.|+|.|..
T Consensus 38 ~~~iVlPGd~L~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~------~~~vsV~p~~ 88 (308)
T 2nn6_H 38 KKHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERV------NKLICVKALK 88 (308)
T ss_dssp --CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEE------TTEEEEEESS
T ss_pred CCcEEeCCCCCCCC--CCEeecCCeEE-ECCEEEEEEEEEEEec------CCEEEEeeCC
Confidence 45679999999753 35899999876 4678999999998853 1357777643
No 14
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=78.87 E-value=1.6 Score=27.89 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=29.4
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 113 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~ 113 (153)
+..-.|+.|.+|++|++-.-.+. ..+|.|+.+|+|.-.
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEKV 59 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEEE
Confidence 34458999999999998655443 578999999998743
No 15
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=74.85 E-value=2.2 Score=26.78 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=28.0
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
+..-.|+.|.+|++|++=.-.+ ...+|.|+.+|+|.-
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~~----------~~~~i~ap~~G~v~~ 49 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESMK----------MEIPIVADRSGIVKE 49 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEETT----------EEEEEECSSCEEEEE
T ss_pred EEcCCcCEECCCCEEEEEECCc----------cEEEEECCCCcEEEE
Confidence 4455799999999999843222 367899999999853
No 16
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=72.91 E-value=0.91 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=0.0
Q ss_pred CeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEecCCCceEEEeEeCC
Q 031785 71 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 129 (153)
Q Consensus 71 Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 129 (153)
++.|.||+.|... .|.||.++.. .|..|+|.+-|.|.+..+ +..|+|.|..
T Consensus 9 ~~iV~PGd~l~~~---~~~~G~Gty~-~~~~I~Asv~G~v~~~~~----~~~vsV~p~~ 59 (235)
T 2z0s_A 9 GRIVVPGEPLPEE---VEASPPYVID-YKGVKRATVVGLLREKGD----GGGRAFVKLK 59 (235)
T ss_dssp -----------------------------------------------------------
T ss_pred CcEEeCCCCcccC---ceEcCCCEEE-ECCEEEEEEeEEEEEeCC----ccEEEEEeCC
Confidence 5789999999742 4899999875 577899999999886532 3446776643
No 17
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=71.55 E-value=3.7 Score=26.44 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=30.0
Q ss_pred ceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 65 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 65 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
=+..-.|+.|.+|++|++---.+ -..+|.|+.+|+|.-
T Consensus 19 ~~~v~~G~~V~~G~~l~~ie~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 19 EVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp ECCCCTTCEECBTSEEEEEESSS----------SCEEEEBSSCEEEEE
T ss_pred EEEcCCCCEECCCCEEEEEEcCC----------ceEEEeCCCCEEEEE
Confidence 34556899999999999865443 368899999999973
No 18
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=69.53 E-value=2.4 Score=27.45 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=29.9
Q ss_pred ceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 65 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 65 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
-+..-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 17 ~~~v~~Gd~V~~G~~l~~le~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 17 ELLVKTGDLIEVEQGLVVLESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EECCCTTCBCCSSSEEEEEECSSC----------EEEEECSSSSEEEE
T ss_pred EEecCCCCEEcCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 355568999999999998665443 47899999999873
No 19
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=67.96 E-value=4.1 Score=27.89 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=28.9
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
+..-.|+.|.+|++|++---.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEEEccce----------eEEEECCCCeEEEE
Confidence 45568999999999998544332 46899999999974
No 20
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=67.71 E-value=3.4 Score=26.71 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=29.9
Q ss_pred ceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 65 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 65 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
=+..-.|+.|.+|++|++---.+. .+.|.|+.+|+|.-
T Consensus 20 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 20 TWHKKPGEAVKRDELIVDIETDKV----------VMEVLAEADGVIAE 57 (79)
T ss_dssp CCSSCTTSEECSSCEEEEEECSSC----------EEEEECSSCEEEEE
T ss_pred EEEcCCCCEECCCCEEEEEEccce----------eEEEEcCCCEEEEE
Confidence 355568999999999998655443 47899999999874
No 21
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=67.63 E-value=3.8 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=28.5
Q ss_pred eeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 67 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 67 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
..-.|+.|.+|++|++---.+. ...|.|+.+|+|.-
T Consensus 26 ~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 26 FIEVGQKVNVGDTLCIVEAMKM----------MNQIEADKSGTVKA 61 (80)
T ss_dssp SCCTTCEECTTCEEEEEEETTE----------EEEEECSSCEEEEE
T ss_pred ccCCcCEECCCCEEEEEEeccE----------EEEEECCCCEEEEE
Confidence 4558999999999998654332 47899999999974
No 22
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=65.71 E-value=4.4 Score=31.71 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=26.6
Q ss_pred eeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEE
Q 031785 67 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 114 (153)
Q Consensus 67 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~ 114 (153)
..-+||.|.+|++|+ .|-| -.+-|.+-.+|+|+|..
T Consensus 65 ~V~dG~~V~~G~~la-----ewDp-------~t~pIisE~~G~V~f~d 100 (190)
T 2auk_A 65 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTD 100 (190)
T ss_dssp SSCTTCEECTTCEEE-----ECCS-------SEEEEECSSCEEEEEES
T ss_pred EecCCCEEcCCCEEE-----EEcC-------cCCcEEeccccEEEEEe
Confidence 345788888888877 4544 22559999999999975
No 23
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=64.59 E-value=5.2 Score=28.18 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=22.8
Q ss_pred eccceEEEeeceEEEEEEecCCCceEEEeEeCCC
Q 031785 97 GKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 130 (153)
Q Consensus 97 GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 130 (153)
-|+..+.|-++|+|.|..+ .++.+.|.|.|.++
T Consensus 21 PK~~AiIaEi~G~V~i~~~-~k~~r~i~I~~~dG 53 (84)
T 2lmc_B 21 MKEPAILAEISGIVSFGKE-TKGKRRLVITPVDG 53 (84)
T ss_dssp ---CCBSBSSSEEEEEECC-SSSCCEEEEEESSS
T ss_pred CCCCEEeecCccEEEEeEe-cCCcEEEEEEECCC
Confidence 3567889999999999874 23555677778654
No 24
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=63.81 E-value=2.4 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=28.9
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
+..-.|+.|.+|+.|++---.+. ..+|.|+.+|+|.-
T Consensus 21 ~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 21 WDVKEGDMVEKDQDLVEVMTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp CSCCTTCEECSCCCCCEEESSSC----------EEECCCCCCEEEEE
T ss_pred EEeCCCCEECCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 45568999999999998654433 46899999999874
No 25
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.57 E-value=7.2 Score=26.63 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=29.0
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
+..-.|+.|.+|+.|++---.|. .++|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~~k~----------~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEEEecce----------EEEEEcCCCEEEE
Confidence 45568999999999998654332 5789999999998
No 26
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=52.46 E-value=2.1 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=29.2
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
+..-.|+.|.+|++|++---.+ ..++|.|+.+|+|.
T Consensus 16 ~~v~~Gd~V~~G~~L~~ie~~k----------~~~~i~Ap~~G~V~ 51 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVK 51 (85)
T ss_dssp CCCSSSCCCCCSSSCCCCSCCC----------SEEEEECSSCBCCC
T ss_pred EEcCCCCEEcCCCEEEEEEccc----------cEEEEECCCCEEEE
Confidence 4556899999999999865443 46889999999986
No 27
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.68 E-value=19 Score=30.16 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=30.4
Q ss_pred CeEeecCcEEeecc-----c----------------CeEeC--CCCeeeeccceEEEeeceEEEEEEec-CCCceEEEeE
Q 031785 71 GERVIPGNIIVRQR-----G----------------TRFHP--GDYVGMGKDHTLYALKEGRVKFEKHK-LSGRKWVHVE 126 (153)
Q Consensus 71 Gq~V~~G~IIvRQR-----G----------------tkfhP--G~NVg~GrD~TLfAl~~G~V~f~~~~-~~~rk~V~V~ 126 (153)
++.|.||+.|...- + -.|.| |.++.. .|..|||..-|.|++.... .+.-+.+.|.
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~-~~~~I~as~aG~l~~~~~~~~~~~~~v~V~ 117 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR-CGDRLLVTKCGRLRHKEPGSGSGGGVYWVD 117 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTTTSSCCEEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEE-ECCEEEEEEeEeEEeccCCccCccceEEEE
Confidence 67799999997542 1 16778 888765 4778999999999866431 0011356666
Q ss_pred eCC
Q 031785 127 PKE 129 (153)
Q Consensus 127 p~~ 129 (153)
|..
T Consensus 118 ~~~ 120 (289)
T 2nn6_G 118 SQQ 120 (289)
T ss_dssp CCC
T ss_pred ecC
Confidence 644
No 28
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=51.56 E-value=7.5 Score=39.43 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=40.4
Q ss_pred eeCCeEeecCcEEeec-c-cCeEeCCCC------------eeeeccceEEEeeceEEEEEEecCCCceEEEeEeCCC
Q 031785 68 KFGGERVIPGNIIVRQ-R-GTRFHPGDY------------VGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 130 (153)
Q Consensus 68 ~~~Gq~V~~G~IIvRQ-R-GtkfhPG~N------------Vg~GrD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 130 (153)
..+|+.|.+|+||+|= | ..|- .+= ...=||..+.|.++|+|.|.++. ++++.|-|.|+++
T Consensus 1109 v~~g~~v~~g~vlakip~~~~k~--~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~~-~~~~~~~i~~~~g 1182 (1407)
T 3lu0_D 1109 LEDGVQISSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET-KGKRRLVITPVDG 1182 (1407)
T ss_dssp CCSSCEECTTCEEECCCCCCCCS--SCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCCC-SSCEEEECCCSSC
T ss_pred ecCCCEeccCceEEecchhhccc--cchhcCcHHHHHHHhccCCCCceEEeccceEEEEeecc-CCceEEEEEeCCC
Confidence 4589999999999982 2 1110 111 11225788999999999998764 4556677888765
No 29
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=51.54 E-value=12 Score=24.73 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=29.3
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 113 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~ 113 (153)
+..-.|+.|.+|+.|+.---.| -...|.|+.+|+|.--
T Consensus 19 ~~v~~Gd~V~~G~~l~~ie~~k----------~~~~i~Ap~~G~v~~~ 56 (84)
T 2kcc_A 19 YTVEDGGHVEAGSSYAEMEVMK----------MIMTLNVQERGRVKYI 56 (84)
T ss_dssp ESSCTTEEECTTCEEEEEECSS----------CEEEEECSSSEEEEEC
T ss_pred EECCCCCEECCCCEEEEEEecc----------eeEEEECCCCEEEEEE
Confidence 4456899999999999865443 2478999999999743
No 30
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=51.46 E-value=12 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=30.4
Q ss_pred cceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 64 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 64 LGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
.-+.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.-
T Consensus 23 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (87)
T 3crk_C 23 QRWEKKVGEKLSEGDLLAEIETDXA----------TIGFEVQEEGYLAK 61 (87)
T ss_dssp EEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEEE
T ss_pred EEEEcCCCCEEcCCCEEEEEECCcc----------cceeecCcCcEEEE
Confidence 3456668999999999998655442 47899999999873
No 31
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=45.66 E-value=3.9 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=27.6
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
+..-.|+.|.+|+.|+.---.|. .++|.|+.+|+|.
T Consensus 21 ~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 21 VEVNVGDTIAVDDTLITLETDKA----------TMDVPAEVAGVVK 56 (81)
T ss_dssp ECCCSSCBCCSSCCCEEEECSSC----------EEEECCCCSSBBC
T ss_pred EEcCCCCEECCCCEEEEEEeCCc----------EEEEECCCCEEEE
Confidence 45568999999999988654432 5789999999875
No 32
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=44.22 E-value=5.5 Score=27.08 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=15.7
Q ss_pred eeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 66 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 66 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
+..-.|+.|.+|++|++---.+. ..+|.|+.+|+|.
T Consensus 39 ~~v~~Gd~V~~Gq~L~~ie~~k~----------~~~i~AP~~G~V~ 74 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVIEAMKM----------QNSMTAGKTGTVK 74 (94)
T ss_dssp ECCCTTCCCCTTCCCEEEEC--------------------------
T ss_pred EECCCCCEEcCCCEEEEEecccc----------cEEEECCCCEEEE
Confidence 44558999999999998554332 3679999999986
No 33
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.72 E-value=19 Score=24.73 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=30.3
Q ss_pred cceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 64 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 64 LGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
.=|.+-.|+.|.+|++|+.---.| -.+.|-|+.+|+|.-
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~ie~~K----------~~~~i~Ap~~G~v~~ 63 (98)
T 2dnc_A 25 VKWLKKEGEAVSAGDALCEIETDK----------AVVTLDASDDGILAK 63 (98)
T ss_dssp EEESSCTTCEECTTSEEEEEECSS----------CEEEEECSSCEEEEE
T ss_pred EEEEcCCCCEeCCCCEEEEEEccc----------ceeEEeCCCCEEEEE
Confidence 345666899999999999865544 257899999999873
No 34
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=33.08 E-value=19 Score=24.35 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=29.6
Q ss_pred ccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 63 NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 63 rLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
=.-+.+-.|+.|.+|+.|+.---.|. ...|.|+.+|+|.
T Consensus 21 v~~~~v~~Gd~V~~G~~l~~ie~~K~----------~~~i~Ap~~G~V~ 59 (93)
T 1k8m_A 21 VKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIK 59 (93)
T ss_dssp EEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEE
T ss_pred EEEEEcCCcCEECCCCEEEEEEcCCc----------EEEEEcCCCEEEE
Confidence 33456668999999999998654442 3678999999987
No 35
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=33.02 E-value=27 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred cceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEE
Q 031785 64 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 112 (153)
Q Consensus 64 LGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f 112 (153)
.-|.+-.|+.|.+|++|+.---.| -.+.|.|..+|+|.-
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~iE~~K----------~~~~i~Ap~~G~V~~ 63 (108)
T 2dne_A 25 ARWEKKEGDKINEGDLIAEVETDK----------ATVGFESLEECYMAK 63 (108)
T ss_dssp EECSSCTTCEECTTSEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEcCc----------ceeEEeCCCCEEEEE
Confidence 345566899999999999865544 247899999999873
No 36
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=31.94 E-value=6.8 Score=25.45 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=28.2
Q ss_pred ceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 65 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 65 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
-+.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.
T Consensus 21 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 21 TWHKKPGDAVVRDEVLVEIETDKV----------VLEVPASADGILD 57 (80)
T ss_dssp BCCCCTTCCBSSSCCBCBCCSSSC----------CCCCBCCSBCCCC
T ss_pred EEECCCcCEECCCCEEEEEEccce----------EEEEECCCCEEEE
Confidence 355668999999999998655442 4778899999875
No 37
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=27.14 E-value=53 Score=26.20 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=42.4
Q ss_pred ecCcEEeecccCeEeCCCCeeeeccceEEEee---ceE----EEEEEecCCCceEEEeEeCCCCc---ccccccc
Q 031785 75 IPGNIIVRQRGTRFHPGDYVGMGKDHTLYALK---EGR----VKFEKHKLSGRKWVHVEPKEGHV---LHPLYAN 139 (153)
Q Consensus 75 ~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~---~G~----V~f~~~~~~~rk~V~V~p~~~~~---~~p~~~~ 139 (153)
.+|.| ..-|+.|.|-+..+.|+.||+-|.. +|. ..|+.-...+.....+.|.+++. -+|+..+
T Consensus 49 V~G~l--s~Dg~~W~~~~~L~~g~~Ytv~a~a~~~~G~~~~~~tFtT~~p~~~~~~~~~P~~g~tVGVg~Pv~v~ 121 (198)
T 4hu2_A 49 VAGRL--SPDGLRWSTTEQLGYNRRYTLNATALGLGGAATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIR 121 (198)
T ss_dssp CCEEE--CTTSSEEEECSCCCTTCEEEEEEEEEETTEEEEEEEEEEBCCCSEEECEEEESCTTCEECTTCCEEEE
T ss_pred EeeEE--CCCCCEEeeCCcCCCCCEEEEEEEEECCCCceeeeeEEEEeCCcccceeEEECCCCCEeeCCceEEEE
Confidence 44554 5568999999999999999999886 565 34554433344456678877652 4555443
No 38
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=26.53 E-value=86 Score=25.41 Aligned_cols=41 Identities=15% Similarity=-0.017 Sum_probs=26.4
Q ss_pred cCeEeCCCCeeeeccc--eEEEeeceEEEEEEecCCCceEEEe
Q 031785 85 GTRFHPGDYVGMGKDH--TLYALKEGRVKFEKHKLSGRKWVHV 125 (153)
Q Consensus 85 GtkfhPG~NVg~GrD~--TLfAl~~G~V~f~~~~~~~rk~V~V 125 (153)
..++|.|.-+...... .++|..+|+|.|.......-.+|-|
T Consensus 77 ~~~~H~GIDi~a~~Gt~~pV~A~~~G~V~~~g~~~~~G~~ViI 119 (245)
T 3tuf_B 77 TYSLSKGIDLAEKDGKDFDVSASLSGTVVKAEKDPVLGYVVEV 119 (245)
T ss_dssp EEEECCSEEEEETTCCCCEEECSSCEEEEEEEEETTTEEEEEE
T ss_pred CccccccEEEeCCCCCcceEEeCcCeEEEEEEecCCCceEEEE
Confidence 3567777666554434 6999999999998653223344444
No 39
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=25.07 E-value=50 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=30.6
Q ss_pred ccceeeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEE
Q 031785 63 NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 111 (153)
Q Consensus 63 rLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 111 (153)
=.-|.+-.|+.|.+|++|+.---.|- .+.|-|..+|+|.
T Consensus 44 V~~~~V~~Gd~V~~Gd~L~~iEa~K~----------~~~I~Ap~~G~V~ 82 (128)
T 1y8o_B 44 VQRWEKKVGEKLSEGDLLAEIETDKA----------TIGFEVQEEGYLA 82 (128)
T ss_dssp EEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EEEEecCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCeEEE
Confidence 34466678999999999998665542 4789999999986
No 40
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=24.52 E-value=65 Score=26.18 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=28.9
Q ss_pred CCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEEe
Q 031785 70 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKH 115 (153)
Q Consensus 70 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~~ 115 (153)
-|+.|.+|++|.++.-. +.+|+. -..|.|..+|.|-+-..
T Consensus 274 ~g~~V~~G~~la~i~dp-~~~G~~-----~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPM-GSLSAA-----SIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp TTCEECTTCEEEEEECT-TCSSSC-----CEEEECSSSEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECC-CCCCCe-----eEEEEeCCCeEEEEEeC
Confidence 58888999998887542 224532 25799999999988763
No 41
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=24.17 E-value=71 Score=25.84 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=24.7
Q ss_pred eEeCCCCeeeeccc----eEEEeeceEEEEEEecCCCceEEEeE
Q 031785 87 RFHPGDYVGMGKDH----TLYALKEGRVKFEKHKLSGRKWVHVE 126 (153)
Q Consensus 87 kfhPG~NVg~GrD~----TLfAl~~G~V~f~~~~~~~rk~V~V~ 126 (153)
.+|.|.-....... .++|..+|+|.+.......-.+|-|.
T Consensus 123 ~~H~GiDi~a~~Gt~~~~pV~A~~~G~V~~~g~~~~~G~~V~I~ 166 (252)
T 3nyy_A 123 RGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGIT 166 (252)
T ss_dssp TTCCCEEEEESSCCTTCSEEECSSCEEEEEEEEETTTEEEEEEE
T ss_pred ccCccEEEecCCCCCCCceEEeccCEEEEEEEecCCCCCEEEEE
Confidence 46666555544444 79999999999876532333444443
No 42
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=23.37 E-value=51 Score=33.66 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=26.7
Q ss_pred eeeCCeEeecCcEEeecccCeEeCCCCeeeeccceEEEeeceEEEEEE
Q 031785 67 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 114 (153)
Q Consensus 67 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~f~~ 114 (153)
..-+||+|.+|++|+- |.| -.+-|.|-++|+|+|..
T Consensus 1004 ~v~~g~~V~~g~~ia~-----wDp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1004 AKGDGEQVAGGETVAN-----WDP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp SSCSSCEECTTCEEEE-----CCS-------SCCCEECSSCEEEEEES
T ss_pred EEcCCCEecCCCEEEE-----Eec-------CceeEEeccceEEEEee
Confidence 3457777777777764 666 24679999999999963
No 43
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.33 E-value=48 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=16.8
Q ss_pred CCeEeecCcEEeecccCeEeCC
Q 031785 70 GGERVIPGNIIVRQRGTRFHPG 91 (153)
Q Consensus 70 ~Gq~V~~G~IIvRQRGtkfhPG 91 (153)
-++.|.+++.+++..|..|||.
T Consensus 17 C~~~i~~~e~~~~~~~~~~H~~ 38 (72)
T 3f6q_B 17 CKGGFAPAEKIVNSNGELYHEQ 38 (72)
T ss_dssp TCCBCCTTCEEEEETTEEEETT
T ss_pred cCccccCCceEEEeCcCeeCcC
Confidence 3556677777788889999986
Done!